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    8 repositories

    • bcl-qc

      Public
      Tools to demux BCLs and QC/QA
      Python
      •2•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • tracks

      Public
      Genomic tracks for NGS panels
      Apache License 2.0
      •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • varseq2hl7

      Public
      Convert VarSeq JSON data to an HL7 message to be sent to EPIC Beaker
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Oct 14, 2024Oct 14, 2024

    • heme-panel-design

      Public
      DNA-seq panel for hematologic cancers
      Apache License 2.0
      •0•0•0•0•Updated Aug 23, 2023Aug 23, 2023

    • SpliceAI

      Public
      A deep learning-based tool to identify splice variants
      Python
      •
      Other
      •161•0•0•0•Updated Jul 19, 2023Jul 19, 2023

    • cbioportal-docker

      Public
      Minimal setup of cBioPortal for MDL/Pathology
      Shell
      •0•0•0•0•Updated Jan 31, 2023Jan 31, 2023

    • pancan-panel-design

      Public
      A pan-cancer DNA-seq panel
      Python
      •
      Apache License 2.0
      •0•7•0•0•Updated Nov 30, 2022Nov 30, 2022

    • isoform-choice

      Public
      Study effect of gene isoform choice on clinical variant reporting
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 7, 2021May 7, 2021