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    37 repositories

    • SPACESCANS

      Public
      The code package for linking patient datasets to external variables.
      Python
      •
      MIT License
      •0•1•9•0•Updated Dec 20, 2024Dec 20, 2024

    • converter_2_0

      Public
      Oneflorida data converter
      Python
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • converter_cluster

      Public
      Source code of the OneFL+ dynamic virtual cluster software for PySpark processing
      Python
      •0•0•1•0•Updated Oct 3, 2024Oct 3, 2024

    • 1FL_PCORnet_to_OMOP_converter

      Public
      This script will convert PCORnet SQL tables to OMOP SQL tables using pyspark
      Python
      •0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

    • iPsRS_Public

      Public
      Python
      •0•3•0•0•Updated Sep 16, 2024Sep 16, 2024

    • GatorTron-Prediction

      Public
      This is the official implementation of "Narrative Feature or Structured Feature? A Study of Large Language Models to Identify Cancer Patients at Risk of Heart Failure"
      Python
      •
      MIT License
      •0•3•0•0•Updated Sep 13, 2024Sep 13, 2024

    • UTH-omoponfhir-main-v54-r4

      Public
      OMOP v5.4 on FHIR R4 with SQL Render - GUI Server
      Dockerfile
      •
      Apache License 2.0
      •6•0•4•0•Updated Aug 7, 2024Aug 7, 2024

    • label-studio-extended

      Public
      Label Studio is a multi-type data labeling and annotation tool with standardized output format
      Python
      •
      Apache License 2.0
      •2.5k•0•0•0•Updated Jul 15, 2024Jul 15, 2024

    • next-enterprise-langserv

      Public template
      💼 An enterprise-grade Next.js boilerplate for high-performance, maintainable apps. Packed with features like Tailwind CSS, TypeScript, ESLint, Prettier, testing tools, and more to accelerate your development.
      TypeScript
      •
      MIT License
      •1.7k•1•0•0•Updated Jul 12, 2024Jul 12, 2024

    • next-fastapi-langchain

      Public template
      💼 An enterprise-grade Next.js boilerplate for high-performance, maintainable apps. Packed with features like Tailwind CSS, TypeScript, ESLint, Prettier, testing tools, and more to accelerate your development.
      TypeScript
      •
      MIT License
      •1.7k•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • next-enterprise-fastapi

      Public template
      💼 An enterprise-grade Next.js boilerplate for high-performance, maintainable apps. Packed with features like Tailwind CSS, TypeScript, ESLint, Prettier, testing tools, and more to accelerate your development.
      TypeScript
      •
      MIT License
      •1.7k•0•0•0•Updated May 29, 2024May 29, 2024

    • NLPreprocessing

      Public
      A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
      Python
      •
      MIT License
      •8•30•1•0•Updated May 22, 2024May 22, 2024

    • RuleBaseSmokingInfoExtractionPy

      Public
      Python implementation of RuleBaseSmokingInfoExtraction java package
      Python
      •1•1•1•0•Updated May 17, 2024May 17, 2024

    • SODA_Docker

      Public
      repo for pipeline development
      Python
      •1•6•4•0•Updated Apr 14, 2024Apr 14, 2024

    • SDoH_SODA

      Public
      Python
      •
      MIT License
      •4•17•3•0•Updated Apr 8, 2024Apr 8, 2024

    • ClinicalTransformerMRC

      Public
      Approaching Clinical NER as a MRC problem
      Python
      •
      MIT License
      •1•11•0•0•Updated Apr 4, 2024Apr 4, 2024

    • ClinicalTransformerClassification

      Public
      2022 N2C2 name entity classification
      Python
      •
      MIT License
      •0•2•0•0•Updated Mar 28, 2024Mar 28, 2024

    • ADRD_risk_factor_knowledge_map

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • DEEPONET_T2D

      Public
      Python
      •
      Other
      •1•0•0•0•Updated Dec 8, 2023Dec 8, 2023

    • GatorTron

      Public
      all scripts used in gatortron project
      Python
      •
      MIT License
      •18•113•4•1•Updated Nov 3, 2023Nov 3, 2023

    • GatoRAG

      Public
      Use GatortronGPT for Retrieval Augmented Generation
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 11, 2023Oct 11, 2023

    • ClinicalTransformerNER

      Public
      a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
      Python
      •
      MIT License
      •29•146•9•1•Updated Sep 13, 2023Sep 13, 2023

    • ClinicalTransformerRelationExtraction

      Public
      A project for developing transformer-based models for clinical relation extraction
      Python
      •
      MIT License
      •23•127•10•1•Updated Aug 15, 2023Aug 15, 2023

    • GatorTronGPT

      Public
      Python
      •8•36•2•0•Updated Jul 13, 2023Jul 13, 2023

    • NLP-ML-training

      Public
      A series of training of deep neural networks on natural language processing
      1•2•0•0•Updated Oct 25, 2022Oct 25, 2022

    • QuantitativeSmokingStatusExtractionNLPTool

      Public
      a rule-base NLP system to extract quantitative smoking information (e.g., pack-year) from clinical notes
      Shell
      •
      MIT License
      •0•3•1•0•Updated Mar 2, 2022Mar 2, 2022

    • seqEHR

      Public
      develop deep learning-based models for learning structured EHR as a sequence
      Python
      •
      MIT License
      •0•5•1•0•Updated Feb 2, 2022Feb 2, 2022

    • EHRmappings

      Public
      mappings between NDC2RXCUI and ICD2PheWas
      Jupyter Notebook
      •
      MIT License
      •0•0•2•0•Updated May 13, 2021May 13, 2021

    • rule-base-engine-py

      Public
      Using rule-based algorithms to extract clinical entities of interest from clinical notes
      Python
      •0•1•0•0•Updated May 12, 2021May 12, 2021

    • colorectal-cancer-predication

      Public
      Prediction of colorectal cancer onset under 50 years old through a machine learning approach using real-world data
      Jupyter Notebook
      •0•0•0•0•Updated Apr 10, 2021Apr 10, 2021