Weng Lab

All

108 repositories

ENCODE-cCREs
Public
Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements
Shell
•6•19•5•0•Updated Dec 19, 2024Dec 19, 2024
SCREEN2.0
Public
TypeScript
•
MIT License
•0•1•36•7•Updated Dec 19, 2024Dec 19, 2024
dnaseseq-workflow
Public
Kotlin
•0•0•0•0•Updated Dec 17, 2024Dec 17, 2024
Factorbook2.0
Public
TypeScript
•0•2•0•0•Updated Dec 17, 2024Dec 17, 2024
genomebrowser-app
Public
TypeScript
•1•0•0•0•Updated Dec 12, 2024Dec 12, 2024
psychscreen
Public
PsychSCREEN
TypeScript
•
MIT License
•0•1•1•0•Updated Nov 7, 2024Nov 7, 2024
psychscreen-ui-components
Public
common UI components for PsychSCREEN
TypeScript
•
MIT License
•0•1•23•0•Updated Oct 23, 2024Oct 23, 2024
cluster-buster
Public
C++
•2•8•1•1•Updated Sep 27, 2024Sep 27, 2024
VIPER
Public
Variant interpretation pipeline and resource
Shell
•
MIT License
•0•0•0•0•Updated Jun 27, 2024Jun 27, 2024
igSCREEN
Public
TypeScript
•
MIT License
•0•1•0•1•Updated Jun 20, 2024Jun 20, 2024
TEMP2
Public
Algorithm to detect germline and de novo transposon insertions
Shell
•
GNU General Public License v3.0
•6•26•0•0•Updated Apr 9, 2024Apr 9, 2024
signal-service
Public
Service for signal and peak data
TypeScript
•
MIT License
•0•2•0•8•Updated Mar 26, 2024Mar 26, 2024
SCREEN
Public
JavaScript
•
MIT License
•2•8•61•9•Updated Mar 1, 2024Mar 1, 2024
dictys
Public
Python
•
GNU Affero General Public License v3.0
•0•0•0•0•Updated Feb 20, 2024Feb 20, 2024
nshedd
Public
Nicole's code and stuff
Python
•0•0•0•0•Updated Feb 12, 2024Feb 12, 2024
docker-nss
Public
libnss plugin for Docker
C
•7•0•0•0•Updated Jan 26, 2024Jan 26, 2024
libzdock
Public
ZDOCK predictions and PDB structures in C++ and Python
cpp pdb structure transformation receptor ligand zdock libpdb m-zdock zlab
C++
•
BSD 2-Clause "Simplified" License
•5•11•0•0•Updated Jan 1, 2024Jan 1, 2024
ATLAS
Public
Altered TCR Ligand Affinities and Structures
HTML
•
GNU General Public License v3.0
•2•10•5•0•Updated Dec 1, 2023Dec 1, 2023
chrombpnet-workflow
Public
Krews workflow for running ChromBPNet
Python
•
MIT License
•0•0•0•0•Updated Nov 18, 2023Nov 18, 2023
krews
Public
KREWS Scientific Data Pipeline Framework
analysis-pipeline kotlin workflows
Kotlin
•0•3•0•0•Updated Oct 25, 2023Oct 25, 2023
bigwig-reader
Public
Typescript library for reading BigWig and BigBed files.
visualization bioinformatics typescript-library reader dataloader bigwig-reader bigbed-files
TypeScript
•
MIT License
•6•8•0•3•Updated Jul 18, 2023Jul 18, 2023
motif-workflow
Public
Kotlin
•0•0•3•0•Updated May 20, 2023May 20, 2023
cabbagelooper
Public
Cabbage looper
genome genome-annotation genome-assembly
CSS
•
BSD 3-Clause "New" or "Revised" License
•1•2•0•4•Updated Apr 12, 2023Apr 12, 2023
chrombpnet
Public
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
Jupyter Notebook
•
MIT License
•34•0•0•1•Updated Mar 9, 2023Mar 9, 2023
bigwig-reader-gcp
Public
TypeScript
•
MIT License
•0•0•0•5•Updated Mar 5, 2023Mar 5, 2023
logojs-webapp
Public
React App with components for rendering protein, DNA, and RNA sequence logos
react javascript svg bioinformatics data-visualization javascript-applications
JavaScript
•
MIT License
•1•3•0•21•Updated Jan 6, 2023Jan 6, 2023
logojs-package
Public
Javascript package for embedding sequence logos
javascript svg bioinformatics data-visualization javascript-library sequence-logo reactjs dna-logo
JavaScript
•
MIT License
•5•15•4•7•Updated Jan 4, 2023Jan 4, 2023
ldr
Public
Dockerized LD regression
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Sep 30, 2022Sep 30, 2022
BENGI
Public
Python
•6•18•1•0•Updated Sep 6, 2022Sep 6, 2022
api-gateways
Public
API Gateway for Genome Almanac services.
TypeScript
•0•0•0•0•Updated Aug 5, 2022Aug 5, 2022