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simplify Pyrodigal version check
CI (Conda/PyTest) #43: Commit a99ae5b pushed by oschwengers
November 10, 2023 15:00 15m 43s main
November 10, 2023 15:00 15m 43s
Re-activate parallel pyrodigal gene prediction (#252)
CI (Conda/PyTest) #42: Commit 4c2c7da pushed by oschwengers
October 26, 2023 06:21 9m 44s main
October 26, 2023 06:21 9m 44s
Re-activate parallel pyrodigal gene prediction
CI (Conda/PyTest) #41: Pull request #252 opened by oschwengers
October 25, 2023 15:39 11m 19s parallel-pyrodigal
October 25, 2023 15:39 11m 19s
re-activate parallel pyrodigal gene prediction
CI (Conda/PyTest) #40: Commit 374fe6f pushed by oschwengers
October 25, 2023 15:37 11m 12s parallel-pyrodigal
October 25, 2023 15:37 11m 12s
review extract region script
CI (Conda/PyTest) #39: Commit 019dde4 pushed by oschwengers
October 25, 2023 14:20 15m 26s scripts
October 25, 2023 14:20 15m 26s
Improve PILER-CR CRISPR parser (#249)
CI (Conda/PyTest) #38: Commit 53df2bf pushed by oschwengers
October 24, 2023 15:59 11m 51s main
October 24, 2023 15:59 11m 51s
Improve PILER-CR CRISPR parser
CI (Conda/PyTest) #37: Pull request #249 synchronize by oschwengers
October 24, 2023 15:37 12m 28s improve-crispr-parser
October 24, 2023 15:37 12m 28s
refactor test code
CI (Conda/PyTest) #36: Commit 7397830 pushed by oschwengers
October 24, 2023 15:37 13m 50s improve-crispr-parser
October 24, 2023 15:37 13m 50s
Improve PILER-CR CRISPR parser
CI (Conda/PyTest) #35: Pull request #249 opened by oschwengers
October 19, 2023 12:21 7m 33s improve-crispr-parser
October 19, 2023 12:21 7m 33s
refactor test
CI (Conda/PyTest) #34: Commit fcbb8e6 pushed by oschwengers
October 19, 2023 12:21 8m 51s improve-crispr-parser
October 19, 2023 12:21 8m 51s
Improve PILER-CR CRISPR parser
CI (Conda/PyTest) #33: Pull request #248 opened by oschwengers
October 19, 2023 12:12 8m 36s improve-crispr-parser
October 19, 2023 12:12 8m 36s
refactor test
CI (Conda/PyTest) #32: Commit c69c291 pushed by oschwengers
October 19, 2023 11:46 9m 38s improve-crispr-parser
October 19, 2023 11:46 9m 38s
add CRISPR PILER-CR test
CI (Conda/PyTest) #31: Commit 0e8ce95 pushed by oschwengers
October 19, 2023 11:45 9m 7s improve-crispr-parser
October 19, 2023 11:45 9m 7s
add CRISPR repeat & spacer output to TSV
CI (Conda/PyTest) #30: Commit 67b1a6a pushed by oschwengers
October 19, 2023 09:57 7m 10s improve-crispr-parser
October 19, 2023 09:57 7m 10s
write CRISPR repeats & spacers to GFF
CI (Conda/PyTest) #29: Commit cfa8075 pushed by oschwengers
October 18, 2023 15:14 11m 15s improve-crispr-parser
October 18, 2023 15:14 11m 15s
implement parsing of CRISPR repeats & spacers
CI (Conda/PyTest) #28: Commit 6b485ab pushed by oschwengers
October 18, 2023 15:14 10m 13s improve-crispr-parser
October 18, 2023 15:14 10m 13s
add support for Pyrodigal v3 (#244)
CI (Conda/PyTest) #27: Commit 358ac16 pushed by oschwengers
October 17, 2023 06:38 10m 32s main
October 17, 2023 06:38 10m 32s
add support for Pyrodigal v3
CI (Conda/PyTest) #26: Pull request #244 synchronize by oschwengers
October 16, 2023 12:48 12m 38s pyrodigal-3
October 16, 2023 12:48 12m 38s
discard multithreaded CDS prediction
CI (Conda/PyTest) #25: Commit 5430ced pushed by oschwengers
October 16, 2023 12:48 8m 39s pyrodigal-3
October 16, 2023 12:48 8m 39s
add support for Pyrodigal v3
CI (Conda/PyTest) #24: Pull request #244 synchronize by oschwengers
October 16, 2023 07:16 10m 28s pyrodigal-3
October 16, 2023 07:16 10m 28s
remove orphan path parameter in cds predict
CI (Conda/PyTest) #23: Commit 52beb57 pushed by oschwengers
October 16, 2023 07:16 8m 38s pyrodigal-3
October 16, 2023 07:16 8m 38s
add support for Pyrodigal v3
CI (Conda/PyTest) #22: Pull request #244 synchronize by oschwengers
September 28, 2023 06:36 14m 58s pyrodigal-3
September 28, 2023 06:36 14m 58s
bump pyrodigal dependency to v3.0.1
CI (Conda/PyTest) #21: Commit e91e3d4 pushed by oschwengers
September 28, 2023 06:36 18m 55s pyrodigal-3
September 28, 2023 06:36 18m 55s
postpone time measurement to the latest possible #243
CI (Conda/PyTest) #20: Commit ff80f62 pushed by oschwengers
September 26, 2023 09:32 11m 28s main
September 26, 2023 09:32 11m 28s
add support for Pyrodigal v3
CI (Conda/PyTest) #19: Pull request #244 synchronize by oschwengers
September 26, 2023 08:55 8m 19s pyrodigal-3
September 26, 2023 08:55 8m 19s