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bump AMRFinderPlus dependency to v3.11.26
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oschwengers committed Nov 17, 2023
1 parent b265672 commit 1a2c48e
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2 changes: 1 addition & 1 deletion bakta/utils.py
Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ def print_version(self):
DEPENDENCY_DIAMOND = (Version(2, 1, 8), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Diamond', ('diamond', 'help'), ['--skip-cds', '--skip-sorf'])
DEPENDENCY_DEEPSIG = (Version(1, 2, 5), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'DeepSig', ('deepsig', '--version'), ['--gram ?'])
DEPENDENCY_BLASTN = (Version(2, 14, 0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Blastn', ('blastn', '-version'), ['--skip-ori'])
DEPENDENCY_AMRFINDERPLUS = (Version(3, 11, 2), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'AMRFinderPlus', ('amrfinder', '--version'), ['--skip-cds'])
DEPENDENCY_AMRFINDERPLUS = (Version(3, 11, 26), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'AMRFinderPlus', ('amrfinder', '--version'), ['--skip-cds'])
DEPENDENCY_CIRCOS = (Version(0, 69, 8), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Circos', ('circos', '--version'), ['--skip-plot'])


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2 changes: 1 addition & 1 deletion environment.yml
Original file line number Diff line number Diff line change
Expand Up @@ -17,5 +17,5 @@ dependencies:
- pyhmmer>=0.10.4
- diamond>=2.1.8
- blast>=2.14.0
- ncbi-amrfinderplus>=3.11.2
- ncbi-amrfinderplus>=3.11.26
- circos>=0.69.8

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