diff --git a/README.md b/README.md index 40c9cde3..c14e8d56 100644 --- a/README.md +++ b/README.md @@ -376,7 +376,7 @@ usage: bakta [--db DB] [--min-contig-length MIN_CONTIG_LENGTH] [--prefix PREFIX] [--genus GENUS] [--species SPECIES] [--strain STRAIN] [--plasmid PLASMID] [--complete] [--prodigal-tf PRODIGAL_TF] [--translation-table {11,4,25}] [--gram {+,-,?}] [--locus LOCUS] [--locus-tag LOCUS_TAG] [--locus-tag-increment {1,5,10}] [--keep-contig-headers] [--compliant] - [--replicons REPLICONS] [--regions REGIONS] [--proteins PROTEINS] [--meta] + [--replicons REPLICONS] [--regions REGIONS] [--proteins PROTEINS] [--hmms HMMS] [--meta] [--skip-trna] [--skip-tmrna] [--skip-rrna] [--skip-ncrna] [--skip-ncrna-region] [--skip-crispr] [--skip-cds] [--skip-pseudo] [--skip-sorf] [--skip-gap] [--skip-ori] [--skip-filter] [--skip-plot] [--help] [--verbose] [--debug] [--threads THREADS] [--tmp-dir TMP_DIR] [--version]