simplify Pyrodigal version check

oschwengers · Nov 10, 2023 · a99ae5b · a99ae5b
1 parent 3260441
commit a99ae5b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bakta/utils.py b/bakta/utils.py
@@ -42,7 +42,7 @@ def print_version(self):
 DEPENDENCY_ARAGORN = (Version(1, 2, 41), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Aragorn', ('aragorn', '-h'), ['skip-tmrna'])
 DEPENDENCY_CMSCAN = (Version(1, 1, 4), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'CMscan', ('cmscan', '-h'), ['--skip-rrna', '--skip-ncrna', '--skip-ncrna-region'])
 DEPENDENCY_PILERCR = (Version(1, 6), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'PilerCR', ('pilercr', '-options'), ['--skip-crispr'])
-DEPENDENCY_PYRODIGAL = (Version(3, 1, 0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Pyrodigal', ('python', '-c', 'import pyrodigal; print(pyrodigal.__version__)'), ['--skip-cds'])
+DEPENDENCY_PYRODIGAL = (Version(3, 1, 0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Pyrodigal', ('pyrodigal', '--version'), ['--skip-cds'])
 DEPENDENCY_PYHMMER = (Version(0, 8, 1), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Pyhmmer', ('python', '-c', 'import pyhmmer; print(pyhmmer.__version__)'), ['--skip-cds', '--skip-sorf'])
 DEPENDENCY_DIAMOND = (Version(2, 0, 14), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Diamond', ('diamond', 'help'), ['--skip-cds', '--skip-sorf'])
 DEPENDENCY_DEEPSIG = (Version(1, 2, 5), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'DeepSig', ('deepsig', '--version'), ['--gram ?'])