From d7b8653b9ff943abda6f4c1e6c7fc3f19ea6b613 Mon Sep 17 00:00:00 2001 From: Oliver Schwengers Date: Mon, 27 Nov 2023 17:42:26 +0100 Subject: [PATCH] add regions parameter to CWL wrapper --- bakta.cwl | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/bakta.cwl b/bakta.cwl index 2c74e8d2..4407018f 100644 --- a/bakta.cwl +++ b/bakta.cwl @@ -99,14 +99,18 @@ inputs: id: keep_contig_headers inputBinding: {prefix: --keep-contig-headers} type: boolean? - - doc: Replicon information table (tsv/csv) - id: replicons - inputBinding: {prefix: --replicons} - type: File? - doc: Force Genbank/ENA/DDJB compliance id: compliant inputBinding: {prefix: --compliant} type: boolean? + - doc: Replicon information table (tsv/csv) + id: replicons + inputBinding: {prefix: --replicons} + type: File? + - doc: Genbank/GFF3 file of trusted regions for pre-detected feature coordinates + id: regions + inputBinding: {prefix: --regions} + type: File? - doc: Fasta file of trusted protein sequences for CDS annotation id: proteins inputBinding: {prefix: --proteins}