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ovis-hpc edited this page Feb 3, 2019
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SOS and numSOS python classes have docstring documentation.
For example, DataSource.py contains the following:
class DataSource(object):
DEF_LIMIT = 4096
DEF_COL_WIDTH = 16
"""Implements a generic analysis Transform data source.
A DataSource is a generic interface to a container. An program
does not instantiate the DataSource, rather it instantiates a
SosDataSource or CsvDataSource. A SosDataSource is backed by a SOS
Container, and a CsvDataSource is backed by a text file.
The get_results() method of a DataSource returns data as a
DataSet. A DataSet encapsulates on or more named data series. See
the DataSet class for more information.
"""
def __init__(self):
self.window = self.DEF_LIMIT
self.col_width = self.DEF_COL_WIDTH
self.last_result = None
...
def show(self, limit=None, file=sys.stdout, reset=True):
"""Output the data specified by the select() method
The data is output to the sys.stdout or can be overridden with
the 'file' keyword parameter. This is a utility function that
makes it easy for developers to test their select() arguments
and visually inspec the data returned.
Keyword Parameters:
limit -- Specifies the maximum number of rows to print. The
default is DataSource.DEFAULT_LIMIT.
file -- A Python FILE object to output data to. Default is
sys.stdout.
reset -- Restart the query at 1st matching row.
"""
if limit is None:
limit = self.window
last_name = None
for col in self.get_columns():
if last_name != col.schema_name:
last_name = col.schema_name
name = last_name
...
Such documentation can be displayed within ipython. Given a DataSet instance called 'src', some useful options:
Displaying documentation for a module:
In [52]: help(Sos)
Help on module sosdb.Sos in sosdb:
NAME
sosdb.Sos
FILE
/home/XXX/BuildSos/lib/python2.7/site-packages/sosdb/Sos.so
CLASSES
__builtin__.object
python.Sos.AttrJoinIter
python.Sos.ColSpec
python.Sos.Filter
...
python.Sos.SosObject
python.Sos.Attr
...
python.Sos.Schema
...
exceptions.NameError(exceptions.StandardError)
python.Sos.ObjAttrError
class Attr(SosObject)
| Method resolution order:
| Attr
| SosObject
| __builtin__.object
|
| Methods defined here:
|
| __eq__(...)
| x.__eq__(y) <==> x==y
|
Displaying documentation for a class within a module:
In [65]: help(SosDataSource)
Help on class SosDataSource in module numsos.DataSource:
class SosDataSource(DataSource)
| Implements a SOS DB analysis Transform data source.
|
| Method resolution order:
| SosDataSource
| DataSource
| __builtin__.object
|
| Methods defined here:
|
| __init__(self)
|
| col_by_name(self, name)
|
| config(self, **kwargs)
| Configure the SOS data source
|
| Keyword Arguments:
| path - The path to the Sos container
| cont - A Sos.Container handle
Determining available functions:
In [45]: %psearch src.s*
src.schema
src.select
src.set_col_width
src.set_window
src.show
...
Viewing docstring for a function:
In [48]: help(src.show)
Help on method show in module numsos.DataSource:
show(self, limit=None, file=<open file '<stdout>', mode 'w'>, reset=True) method of numsos.DataSource.SosDataSource instance
Output the data specified by the select() method
The data is output to the sys.stdout or can be overridden with
the 'file' keyword parameter. This is a utility function that
makes it easy for developers to test their select() arguments
and visually inspec the data returned.
Keyword Parameters:
limit -- Specifies the maximum number of rows to print. The
default is DataSource.DEFAULT_LIMIT.
file -- A Python FILE object to output data to. Default is
sys.stdout.
reset -- Restart the query at 1st matching row.
Question mark queries display forms of docstring or help as well:
In [66]: SosDataSource?
Init signature: SosDataSource(self)
Docstring:
Implements a SOS DB analysis Transform data source.
File: /home/XXX/BuildSos/lib/python2.7/site-packages/numsos/DataSource.py
Type: type
In [50]: src.show?
Signature: src.show(limit=None, file=<open file '<stdout>', mode 'w' at 0x7fb914fe8150>, reset=True)
Docstring:
Output the data specified by the select() method
The data is output to the sys.stdout or can be overridden with
the 'file' keyword parameter. This is a utility function that
makes it easy for developers to test their select() arguments
and visually inspec the data returned.
Keyword Parameters:
limit -- Specifies the maximum number of rows to print. The
default is DataSource.DEFAULT_LIMIT.
file -- A Python FILE object to output data to. Default is
sys.stdout.
reset -- Restart the query at 1st matching row.
File: /home/XXX/BuildSos/lib/python2.7/site-packages/numsos/DataSource.py
Type: instancemethod
- SOS QuickStart - includes creating SOS from CSV
- Building
- Viewing Class Documentation
- numSOS overview - python queries to numSOS data objects.