Replication of results for Molecular type (Classical / basal-like)

[PierpaoloV]

I would like to replicate your results on the TCGA-PAAD dataset, however when downloading data from the TCGA archive, slide level labels aren't provided.
Can you provide slide level annotations regarding the molecular type so to replicate results from python pacpaint/engine/pacpaint_bc/train.py

[PierpaoloV]

@jbschiratti could you help on this?

[CharlieCheckpt]

Dear @PierpaoloV,
Sorry for the delayed answer, I was on holidays. Please find here the labels basal/classic of TCGA-PAAD.
Best

[PierpaoloV]

Hi @CharlieCheckpt thanks for answering! I noticed that TCGA-PAAD was actually used as independent validation cohort for the experiment, would it be possible to share the weights of the trained model (PACpAInt-B/C)? Assuming I have a new dataset for which I have tumor mask. Best.