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ggplottechs.csv
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Var1 Var2 Alteration
AKT1 PRO001_18-cnvkit_call GAIN
APC PRO001_18-cnvkit_call LOSS
AR PRO001_18-cnvkit_call AMP
ARID1A PRO001_18-cnvkit_call NEUTRAL
ATM PRO001_18-cnvkit_call NEUTRAL
ATR PRO001_18-cnvkit_call GAIN
B2M PRO001_18-cnvkit_call LOSS
BAP1 PRO001_18-cnvkit_call NEUTRAL
BARD1 PRO001_18-cnvkit_call NEUTRAL
BLM PRO001_18-cnvkit_call LOSS
BRAF PRO001_18-cnvkit_call GAIN
BRCA1 PRO001_18-cnvkit_call NEUTRAL
BRCA2 PRO001_18-cnvkit_call LOSS
BRIP1 PRO001_18-cnvkit_call NEUTRAL
CCND1 PRO001_18-cnvkit_call NEUTRAL
CDK12 PRO001_18-cnvkit_call NEUTRAL
CDK4 PRO001_18-cnvkit_call GAIN
CDK6 PRO001_18-cnvkit_call GAIN
CDKN2A PRO001_18-cnvkit_call GAIN
CDKN2B PRO001_18-cnvkit_call
CHEK1 PRO001_18-cnvkit_call GAIN
CHEK2 PRO001_18-cnvkit_call LOSS
CTNNB1 PRO001_18-cnvkit_call NEUTRAL
EGFR PRO001_18-cnvkit_call GAIN
EP300 PRO001_18-cnvkit_call LOSS
ERCC2 PRO001_18-cnvkit_call GAIN
ERCC5 PRO001_18-cnvkit_call LOSS
ERG PRO001_18-cnvkit_call NEUTRAL
ETV1 PRO001_18-cnvkit_call GAIN
ETV6 PRO001_18-cnvkit_call GAIN
FANCA PRO001_18-cnvkit_call LOSS
FOXA1 PRO001_18-cnvkit_call GAIN
KDM5A PRO001_18-cnvkit_call GAIN
KDM6A PRO001_18-cnvkit_call NEUTRAL
KMT2C PRO001_18-cnvkit_call GAIN
KMT2D PRO001_18-cnvkit_call GAIN
MDM2 PRO001_18-cnvkit_call GAIN
MET PRO001_18-cnvkit_call GAIN
MLH1 PRO001_18-cnvkit_call NEUTRAL
MSH2 PRO001_18-cnvkit_call NEUTRAL
MSH6 PRO001_18-cnvkit_call NEUTRAL
MUTYH PRO001_18-cnvkit_call LOSS
MYC PRO001_18-cnvkit_call AMP
NCOR1 PRO001_18-cnvkit_call NEUTRAL
NKX3-1 PRO001_18-cnvkit_call LOSS
PALB2 PRO001_18-cnvkit_call LOSS
PARP1 PRO001_18-cnvkit_call GAIN
PIK3CA PRO001_18-cnvkit_call GAIN
PIK3CB PRO001_18-cnvkit_call GAIN
PRKDC PRO001_18-cnvkit_call AMP
PTEN PRO001_18-cnvkit_call LOSS
RAD50 PRO001_18-cnvkit_call LOSS
RAD51 PRO001_18-cnvkit_call LOSS
RAD51B PRO001_18-cnvkit_call GAIN
RAD51C PRO001_18-cnvkit_call NEUTRAL
RAD51D PRO001_18-cnvkit_call NEUTRAL
RB1 PRO001_18-cnvkit_call LOSS
SPOP PRO001_18-cnvkit_call NEUTRAL
TP53 PRO001_18-cnvkit_call NEUTRAL
AKT1 PRO001_18-DNAcopy_call
APC PRO001_18-DNAcopy_call
AR PRO001_18-DNAcopy_call AMP
ARID1A PRO001_18-DNAcopy_call LOSS
ATM PRO001_18-DNAcopy_call GAIN
ATR PRO001_18-DNAcopy_call GAIN
B2M PRO001_18-DNAcopy_call LOSS
BAP1 PRO001_18-DNAcopy_call LOSS
BARD1 PRO001_18-DNAcopy_call DEEPDEL
BLM PRO001_18-DNAcopy_call DEEPDEL
BRAF PRO001_18-DNAcopy_call GAIN
BRCA1 PRO001_18-DNAcopy_call
BRCA2 PRO001_18-DNAcopy_call
BRIP1 PRO001_18-DNAcopy_call
CCND1 PRO001_18-DNAcopy_call
CDK12 PRO001_18-DNAcopy_call
CDK4 PRO001_18-DNAcopy_call NEUTRAL
CDK6 PRO001_18-DNAcopy_call AMP
CDKN2A PRO001_18-DNAcopy_call GAIN
CDKN2B PRO001_18-DNAcopy_call GAIN
CHEK1 PRO001_18-DNAcopy_call GAIN
CHEK2 PRO001_18-DNAcopy_call DEEPDEL
CTNNB1 PRO001_18-DNAcopy_call
EGFR PRO001_18-DNAcopy_call AMP
EP300 PRO001_18-DNAcopy_call LOSS
ERCC2 PRO001_18-DNAcopy_call GAIN
ERCC5 PRO001_18-DNAcopy_call DEEPDEL
ERG PRO001_18-DNAcopy_call LOSS
ETV1 PRO001_18-DNAcopy_call GAIN
ETV6 PRO001_18-DNAcopy_call
FANCA PRO001_18-DNAcopy_call
FOXA1 PRO001_18-DNAcopy_call
KDM5A PRO001_18-DNAcopy_call NEUTRAL
KDM6A PRO001_18-DNAcopy_call GAIN
KMT2C PRO001_18-DNAcopy_call
KMT2D PRO001_18-DNAcopy_call
MDM2 PRO001_18-DNAcopy_call GAIN
MET PRO001_18-DNAcopy_call LOSS
MLH1 PRO001_18-DNAcopy_call
MSH2 PRO001_18-DNAcopy_call
MSH6 PRO001_18-DNAcopy_call
MUTYH PRO001_18-DNAcopy_call DEEPDEL
MYC PRO001_18-DNAcopy_call AMP
NCOR1 PRO001_18-DNAcopy_call
NKX3-1 PRO001_18-DNAcopy_call DEEPDEL
PALB2 PRO001_18-DNAcopy_call
PARP1 PRO001_18-DNAcopy_call
PIK3CA PRO001_18-DNAcopy_call
PIK3CB PRO001_18-DNAcopy_call GAIN
PRKDC PRO001_18-DNAcopy_call AMP
PTEN PRO001_18-DNAcopy_call
RAD50 PRO001_18-DNAcopy_call
RAD51 PRO001_18-DNAcopy_call
RAD51B PRO001_18-DNAcopy_call
RAD51C PRO001_18-DNAcopy_call
RAD51D PRO001_18-DNAcopy_call GAIN
RB1 PRO001_18-DNAcopy_call AMP
SPOP PRO001_18-DNAcopy_call
TP53 PRO001_18-DNAcopy_call LOSS
AKT1 PRO001_18-ichorcna_call GAIN
APC PRO001_18-ichorcna_call LOSS
AR PRO001_18-ichorcna_call AMP
ARID1A PRO001_18-ichorcna_call NEUTRAL
ATM PRO001_18-ichorcna_call NEUTRAL
ATR PRO001_18-ichorcna_call GAIN
B2M PRO001_18-ichorcna_call LOSS
BAP1 PRO001_18-ichorcna_call NEUTRAL
BARD1 PRO001_18-ichorcna_call NEUTRAL
BLM PRO001_18-ichorcna_call DEEPDEL
BRAF PRO001_18-ichorcna_call NEUTRAL
BRCA1 PRO001_18-ichorcna_call NEUTRAL
BRCA2 PRO001_18-ichorcna_call LOSS
BRIP1 PRO001_18-ichorcna_call NEUTRAL
CCND1 PRO001_18-ichorcna_call NEUTRAL
CDK12 PRO001_18-ichorcna_call NEUTRAL
CDK4 PRO001_18-ichorcna_call GAIN
CDK6 PRO001_18-ichorcna_call GAIN
CDKN2A PRO001_18-ichorcna_call GAIN
CDKN2B PRO001_18-ichorcna_call GAIN
CHEK1 PRO001_18-ichorcna_call GAIN
CHEK2 PRO001_18-ichorcna_call LOSS
CTNNB1 PRO001_18-ichorcna_call NEUTRAL
EGFR PRO001_18-ichorcna_call GAIN
EP300 PRO001_18-ichorcna_call LOSS
ERCC2 PRO001_18-ichorcna_call GAIN
ERCC5 PRO001_18-ichorcna_call LOSS
ERG PRO001_18-ichorcna_call NEUTRAL
ETV1 PRO001_18-ichorcna_call GAIN
ETV6 PRO001_18-ichorcna_call GAIN
FANCA PRO001_18-ichorcna_call LOSS
FOXA1 PRO001_18-ichorcna_call GAIN
KDM5A PRO001_18-ichorcna_call
KDM6A PRO001_18-ichorcna_call GAIN
KMT2C PRO001_18-ichorcna_call NEUTRAL
KMT2D PRO001_18-ichorcna_call GAIN
MDM2 PRO001_18-ichorcna_call GAIN
MET PRO001_18-ichorcna_call NEUTRAL
MLH1 PRO001_18-ichorcna_call NEUTRAL
MSH2 PRO001_18-ichorcna_call NEUTRAL
MSH6 PRO001_18-ichorcna_call NEUTRAL
MUTYH PRO001_18-ichorcna_call LOSS
MYC PRO001_18-ichorcna_call AMP
NCOR1 PRO001_18-ichorcna_call NEUTRAL
NKX3-1 PRO001_18-ichorcna_call LOSS
PALB2 PRO001_18-ichorcna_call LOSS
PARP1 PRO001_18-ichorcna_call GAIN
PIK3CA PRO001_18-ichorcna_call GAIN
PIK3CB PRO001_18-ichorcna_call GAIN
PRKDC PRO001_18-ichorcna_call AMP
PTEN PRO001_18-ichorcna_call LOSS
RAD50 PRO001_18-ichorcna_call LOSS
RAD51 PRO001_18-ichorcna_call LOSS
RAD51B PRO001_18-ichorcna_call GAIN
RAD51C PRO001_18-ichorcna_call NEUTRAL
RAD51D PRO001_18-ichorcna_call NEUTRAL
RB1 PRO001_18-ichorcna_call LOSS
SPOP PRO001_18-ichorcna_call NEUTRAL
TP53 PRO001_18-ichorcna_call NEUTRAL
AKT1 PRO001_18-panel_call
APC PRO001_18-panel_call
AR PRO001_18-panel_call
ARID1A PRO001_18-panel_call
ATM PRO001_18-panel_call
ATR PRO001_18-panel_call
B2M PRO001_18-panel_call
BAP1 PRO001_18-panel_call
BARD1 PRO001_18-panel_call
BLM PRO001_18-panel_call
BRAF PRO001_18-panel_call
BRCA1 PRO001_18-panel_call
BRCA2 PRO001_18-panel_call
BRIP1 PRO001_18-panel_call
CCND1 PRO001_18-panel_call
CDK12 PRO001_18-panel_call
CDK4 PRO001_18-panel_call
CDK6 PRO001_18-panel_call
CDKN2A PRO001_18-panel_call
CDKN2B PRO001_18-panel_call
CHEK1 PRO001_18-panel_call
CHEK2 PRO001_18-panel_call
CTNNB1 PRO001_18-panel_call
EGFR PRO001_18-panel_call
EP300 PRO001_18-panel_call
ERCC2 PRO001_18-panel_call
ERCC5 PRO001_18-panel_call
ERG PRO001_18-panel_call
ETV1 PRO001_18-panel_call
ETV6 PRO001_18-panel_call
FANCA PRO001_18-panel_call
FOXA1 PRO001_18-panel_call
KDM5A PRO001_18-panel_call
KDM6A PRO001_18-panel_call
KMT2C PRO001_18-panel_call
KMT2D PRO001_18-panel_call
MDM2 PRO001_18-panel_call
MET PRO001_18-panel_call
MLH1 PRO001_18-panel_call
MSH2 PRO001_18-panel_call
MSH6 PRO001_18-panel_call
MUTYH PRO001_18-panel_call
MYC PRO001_18-panel_call
NCOR1 PRO001_18-panel_call
NKX3-1 PRO001_18-panel_call
PALB2 PRO001_18-panel_call
PARP1 PRO001_18-panel_call
PIK3CA PRO001_18-panel_call
PIK3CB PRO001_18-panel_call
PRKDC PRO001_18-panel_call
PTEN PRO001_18-panel_call
RAD50 PRO001_18-panel_call
RAD51 PRO001_18-panel_call
RAD51B PRO001_18-panel_call
RAD51C PRO001_18-panel_call
RAD51D PRO001_18-panel_call
RB1 PRO001_18-panel_call
SPOP PRO001_18-panel_call
TP53 PRO001_18-panel_call
AKT1 PRO001_18-qdnaseq_call GAIN
APC PRO001_18-qdnaseq_call LOSS
AR PRO001_18-qdnaseq_call AMP
ARID1A PRO001_18-qdnaseq_call GAIN
ATM PRO001_18-qdnaseq_call NEUTRAL
ATR PRO001_18-qdnaseq_call GAIN
B2M PRO001_18-qdnaseq_call LOSS
BAP1 PRO001_18-qdnaseq_call NEUTRAL
BARD1 PRO001_18-qdnaseq_call NEUTRAL
BLM PRO001_18-qdnaseq_call LOSS
BRAF PRO001_18-qdnaseq_call GAIN
BRCA1 PRO001_18-qdnaseq_call NEUTRAL
BRCA2 PRO001_18-qdnaseq_call LOSS
BRIP1 PRO001_18-qdnaseq_call NEUTRAL
CCND1 PRO001_18-qdnaseq_call NEUTRAL
CDK12 PRO001_18-qdnaseq_call NEUTRAL
CDK4 PRO001_18-qdnaseq_call GAIN
CDK6 PRO001_18-qdnaseq_call GAIN
CDKN2A PRO001_18-qdnaseq_call GAIN
CDKN2B PRO001_18-qdnaseq_call GAIN
CHEK1 PRO001_18-qdnaseq_call GAIN
CHEK2 PRO001_18-qdnaseq_call LOSS
CTNNB1 PRO001_18-qdnaseq_call NEUTRAL
EGFR PRO001_18-qdnaseq_call GAIN
EP300 PRO001_18-qdnaseq_call LOSS
ERCC2 PRO001_18-qdnaseq_call GAIN
ERCC5 PRO001_18-qdnaseq_call LOSS
ERG PRO001_18-qdnaseq_call NEUTRAL
ETV1 PRO001_18-qdnaseq_call GAIN
ETV6 PRO001_18-qdnaseq_call GAIN
FANCA PRO001_18-qdnaseq_call LOSS
FOXA1 PRO001_18-qdnaseq_call AMP
KDM5A PRO001_18-qdnaseq_call GAIN
KDM6A PRO001_18-qdnaseq_call NEUTRAL
KMT2C PRO001_18-qdnaseq_call GAIN
KMT2D PRO001_18-qdnaseq_call GAIN
MDM2 PRO001_18-qdnaseq_call GAIN
MET PRO001_18-qdnaseq_call GAIN
MLH1 PRO001_18-qdnaseq_call GAIN
MSH2 PRO001_18-qdnaseq_call NEUTRAL
MSH6 PRO001_18-qdnaseq_call NEUTRAL
MUTYH PRO001_18-qdnaseq_call LOSS
MYC PRO001_18-qdnaseq_call AMP
NCOR1 PRO001_18-qdnaseq_call LOSS
NKX3-1 PRO001_18-qdnaseq_call LOSS
PALB2 PRO001_18-qdnaseq_call NEUTRAL
PARP1 PRO001_18-qdnaseq_call GAIN
PIK3CA PRO001_18-qdnaseq_call GAIN
PIK3CB PRO001_18-qdnaseq_call GAIN
PRKDC PRO001_18-qdnaseq_call AMP
PTEN PRO001_18-qdnaseq_call LOSS
RAD50 PRO001_18-qdnaseq_call LOSS
RAD51 PRO001_18-qdnaseq_call LOSS
RAD51B PRO001_18-qdnaseq_call GAIN
RAD51C PRO001_18-qdnaseq_call GAIN
RAD51D PRO001_18-qdnaseq_call NEUTRAL
RB1 PRO001_18-qdnaseq_call LOSS
SPOP PRO001_18-qdnaseq_call NEUTRAL
TP53 PRO001_18-qdnaseq_call NEUTRAL
AKT1 PRO003_M1-cnvkit_call LOSS
APC PRO003_M1-cnvkit_call NEUTRAL
AR PRO003_M1-cnvkit_call NEUTRAL
ARID1A PRO003_M1-cnvkit_call NEUTRAL
ATM PRO003_M1-cnvkit_call NEUTRAL
ATR PRO003_M1-cnvkit_call GAIN
B2M PRO003_M1-cnvkit_call NEUTRAL
BAP1 PRO003_M1-cnvkit_call NEUTRAL
BARD1 PRO003_M1-cnvkit_call NEUTRAL
BLM PRO003_M1-cnvkit_call NEUTRAL
BRAF PRO003_M1-cnvkit_call NEUTRAL
BRCA1 PRO003_M1-cnvkit_call NEUTRAL
BRCA2 PRO003_M1-cnvkit_call NEUTRAL
BRIP1 PRO003_M1-cnvkit_call GAIN
CCND1 PRO003_M1-cnvkit_call NEUTRAL
CDK12 PRO003_M1-cnvkit_call NEUTRAL
CDK4 PRO003_M1-cnvkit_call NEUTRAL
CDK6 PRO003_M1-cnvkit_call NEUTRAL
CDKN2A PRO003_M1-cnvkit_call NEUTRAL
CDKN2B PRO003_M1-cnvkit_call
CHEK1 PRO003_M1-cnvkit_call NEUTRAL
CHEK2 PRO003_M1-cnvkit_call NEUTRAL
CTNNB1 PRO003_M1-cnvkit_call NEUTRAL
EGFR PRO003_M1-cnvkit_call NEUTRAL
EP300 PRO003_M1-cnvkit_call NEUTRAL
ERCC2 PRO003_M1-cnvkit_call NEUTRAL
ERCC5 PRO003_M1-cnvkit_call NEUTRAL
ERG PRO003_M1-cnvkit_call NEUTRAL
ETV1 PRO003_M1-cnvkit_call NEUTRAL
ETV6 PRO003_M1-cnvkit_call NEUTRAL
FANCA PRO003_M1-cnvkit_call NEUTRAL
FOXA1 PRO003_M1-cnvkit_call NEUTRAL
KDM5A PRO003_M1-cnvkit_call NEUTRAL
KDM6A PRO003_M1-cnvkit_call NEUTRAL
KMT2C PRO003_M1-cnvkit_call NEUTRAL
KMT2D PRO003_M1-cnvkit_call NEUTRAL
MDM2 PRO003_M1-cnvkit_call NEUTRAL
MET PRO003_M1-cnvkit_call NEUTRAL
MLH1 PRO003_M1-cnvkit_call NEUTRAL
MSH2 PRO003_M1-cnvkit_call NEUTRAL
MSH6 PRO003_M1-cnvkit_call NEUTRAL
MUTYH PRO003_M1-cnvkit_call NEUTRAL
MYC PRO003_M1-cnvkit_call GAIN
NCOR1 PRO003_M1-cnvkit_call LOSS
NKX3-1 PRO003_M1-cnvkit_call LOSS
PALB2 PRO003_M1-cnvkit_call NEUTRAL
PARP1 PRO003_M1-cnvkit_call NEUTRAL
PIK3CA PRO003_M1-cnvkit_call GAIN
PIK3CB PRO003_M1-cnvkit_call GAIN
PRKDC PRO003_M1-cnvkit_call LOSS
PTEN PRO003_M1-cnvkit_call NEUTRAL
RAD50 PRO003_M1-cnvkit_call NEUTRAL
RAD51 PRO003_M1-cnvkit_call NEUTRAL
RAD51B PRO003_M1-cnvkit_call NEUTRAL
RAD51C PRO003_M1-cnvkit_call GAIN
RAD51D PRO003_M1-cnvkit_call LOSS
RB1 PRO003_M1-cnvkit_call NEUTRAL
SPOP PRO003_M1-cnvkit_call GAIN
TP53 PRO003_M1-cnvkit_call LOSS
AKT1 PRO003_M1-DNAcopy_call
APC PRO003_M1-DNAcopy_call
AR PRO003_M1-DNAcopy_call
ARID1A PRO003_M1-DNAcopy_call GAIN
ATM PRO003_M1-DNAcopy_call
ATR PRO003_M1-DNAcopy_call GAIN
B2M PRO003_M1-DNAcopy_call
BAP1 PRO003_M1-DNAcopy_call LOSS
BARD1 PRO003_M1-DNAcopy_call LOSS
BLM PRO003_M1-DNAcopy_call NEUTRAL
BRAF PRO003_M1-DNAcopy_call GAIN
BRCA1 PRO003_M1-DNAcopy_call
BRCA2 PRO003_M1-DNAcopy_call
BRIP1 PRO003_M1-DNAcopy_call LOSS
CCND1 PRO003_M1-DNAcopy_call GAIN
CDK12 PRO003_M1-DNAcopy_call GAIN
CDK4 PRO003_M1-DNAcopy_call GAIN
CDK6 PRO003_M1-DNAcopy_call AMP
CDKN2A PRO003_M1-DNAcopy_call
CDKN2B PRO003_M1-DNAcopy_call
CHEK1 PRO003_M1-DNAcopy_call
CHEK2 PRO003_M1-DNAcopy_call LOSS
CTNNB1 PRO003_M1-DNAcopy_call
EGFR PRO003_M1-DNAcopy_call AMP
EP300 PRO003_M1-DNAcopy_call NEUTRAL
ERCC2 PRO003_M1-DNAcopy_call LOSS
ERCC5 PRO003_M1-DNAcopy_call LOSS
ERG PRO003_M1-DNAcopy_call LOSS
ETV1 PRO003_M1-DNAcopy_call LOSS
ETV6 PRO003_M1-DNAcopy_call GAIN
FANCA PRO003_M1-DNAcopy_call DEEPDEL
FOXA1 PRO003_M1-DNAcopy_call GAIN
KDM5A PRO003_M1-DNAcopy_call
KDM6A PRO003_M1-DNAcopy_call GAIN
KMT2C PRO003_M1-DNAcopy_call
KMT2D PRO003_M1-DNAcopy_call GAIN
MDM2 PRO003_M1-DNAcopy_call AMP
MET PRO003_M1-DNAcopy_call
MLH1 PRO003_M1-DNAcopy_call GAIN
MSH2 PRO003_M1-DNAcopy_call
MSH6 PRO003_M1-DNAcopy_call
MUTYH PRO003_M1-DNAcopy_call
MYC PRO003_M1-DNAcopy_call GAIN
NCOR1 PRO003_M1-DNAcopy_call
NKX3-1 PRO003_M1-DNAcopy_call GAIN
PALB2 PRO003_M1-DNAcopy_call
PARP1 PRO003_M1-DNAcopy_call
PIK3CA PRO003_M1-DNAcopy_call GAIN
PIK3CB PRO003_M1-DNAcopy_call AMP
PRKDC PRO003_M1-DNAcopy_call
PTEN PRO003_M1-DNAcopy_call GAIN
RAD50 PRO003_M1-DNAcopy_call
RAD51 PRO003_M1-DNAcopy_call
RAD51B PRO003_M1-DNAcopy_call GAIN
RAD51C PRO003_M1-DNAcopy_call GAIN
RAD51D PRO003_M1-DNAcopy_call
RB1 PRO003_M1-DNAcopy_call NEUTRAL
SPOP PRO003_M1-DNAcopy_call
TP53 PRO003_M1-DNAcopy_call LOSS
AKT1 PRO003_M1-ichorcna_call LOSS
APC PRO003_M1-ichorcna_call NEUTRAL
AR PRO003_M1-ichorcna_call NEUTRAL
ARID1A PRO003_M1-ichorcna_call NEUTRAL
ATM PRO003_M1-ichorcna_call NEUTRAL
ATR PRO003_M1-ichorcna_call GAIN
B2M PRO003_M1-ichorcna_call NEUTRAL
BAP1 PRO003_M1-ichorcna_call NEUTRAL
BARD1 PRO003_M1-ichorcna_call NEUTRAL
BLM PRO003_M1-ichorcna_call LOSS
BRAF PRO003_M1-ichorcna_call GAIN
BRCA1 PRO003_M1-ichorcna_call GAIN
BRCA2 PRO003_M1-ichorcna_call NEUTRAL
BRIP1 PRO003_M1-ichorcna_call GAIN
CCND1 PRO003_M1-ichorcna_call NEUTRAL
CDK12 PRO003_M1-ichorcna_call GAIN
CDK4 PRO003_M1-ichorcna_call NEUTRAL
CDK6 PRO003_M1-ichorcna_call GAIN
CDKN2A PRO003_M1-ichorcna_call NEUTRAL
CDKN2B PRO003_M1-ichorcna_call NEUTRAL
CHEK1 PRO003_M1-ichorcna_call NEUTRAL
CHEK2 PRO003_M1-ichorcna_call LOSS
CTNNB1 PRO003_M1-ichorcna_call NEUTRAL
EGFR PRO003_M1-ichorcna_call NEUTRAL
EP300 PRO003_M1-ichorcna_call LOSS
ERCC2 PRO003_M1-ichorcna_call NEUTRAL
ERCC5 PRO003_M1-ichorcna_call LOSS
ERG PRO003_M1-ichorcna_call NEUTRAL
ETV1 PRO003_M1-ichorcna_call NEUTRAL
ETV6 PRO003_M1-ichorcna_call NEUTRAL
FANCA PRO003_M1-ichorcna_call LOSS
FOXA1 PRO003_M1-ichorcna_call NEUTRAL
KDM5A PRO003_M1-ichorcna_call
KDM6A PRO003_M1-ichorcna_call NEUTRAL
KMT2C PRO003_M1-ichorcna_call NEUTRAL
KMT2D PRO003_M1-ichorcna_call NEUTRAL
MDM2 PRO003_M1-ichorcna_call NEUTRAL
MET PRO003_M1-ichorcna_call GAIN
MLH1 PRO003_M1-ichorcna_call GAIN
MSH2 PRO003_M1-ichorcna_call NEUTRAL
MSH6 PRO003_M1-ichorcna_call NEUTRAL
MUTYH PRO003_M1-ichorcna_call NEUTRAL
MYC PRO003_M1-ichorcna_call NEUTRAL
NCOR1 PRO003_M1-ichorcna_call LOSS
NKX3-1 PRO003_M1-ichorcna_call LOSS
PALB2 PRO003_M1-ichorcna_call LOSS
PARP1 PRO003_M1-ichorcna_call NEUTRAL
PIK3CA PRO003_M1-ichorcna_call GAIN
PIK3CB PRO003_M1-ichorcna_call GAIN
PRKDC PRO003_M1-ichorcna_call NEUTRAL
PTEN PRO003_M1-ichorcna_call NEUTRAL
RAD50 PRO003_M1-ichorcna_call NEUTRAL
RAD51 PRO003_M1-ichorcna_call NEUTRAL
RAD51B PRO003_M1-ichorcna_call NEUTRAL
RAD51C PRO003_M1-ichorcna_call GAIN
RAD51D PRO003_M1-ichorcna_call LOSS
RB1 PRO003_M1-ichorcna_call LOSS
SPOP PRO003_M1-ichorcna_call GAIN
TP53 PRO003_M1-ichorcna_call LOSS
AKT1 PRO003_M1-panel_call
APC PRO003_M1-panel_call
AR PRO003_M1-panel_call
ARID1A PRO003_M1-panel_call
ATM PRO003_M1-panel_call
ATR PRO003_M1-panel_call
B2M PRO003_M1-panel_call
BAP1 PRO003_M1-panel_call
BARD1 PRO003_M1-panel_call
BLM PRO003_M1-panel_call
BRAF PRO003_M1-panel_call
BRCA1 PRO003_M1-panel_call
BRCA2 PRO003_M1-panel_call
BRIP1 PRO003_M1-panel_call
CCND1 PRO003_M1-panel_call
CDK12 PRO003_M1-panel_call
CDK4 PRO003_M1-panel_call
CDK6 PRO003_M1-panel_call
CDKN2A PRO003_M1-panel_call
CDKN2B PRO003_M1-panel_call
CHEK1 PRO003_M1-panel_call
CHEK2 PRO003_M1-panel_call
CTNNB1 PRO003_M1-panel_call
EGFR PRO003_M1-panel_call
EP300 PRO003_M1-panel_call
ERCC2 PRO003_M1-panel_call
ERCC5 PRO003_M1-panel_call
ERG PRO003_M1-panel_call
ETV1 PRO003_M1-panel_call
ETV6 PRO003_M1-panel_call
FANCA PRO003_M1-panel_call
FOXA1 PRO003_M1-panel_call
KDM5A PRO003_M1-panel_call
KDM6A PRO003_M1-panel_call
KMT2C PRO003_M1-panel_call
KMT2D PRO003_M1-panel_call
MDM2 PRO003_M1-panel_call
MET PRO003_M1-panel_call
MLH1 PRO003_M1-panel_call
MSH2 PRO003_M1-panel_call
MSH6 PRO003_M1-panel_call
MUTYH PRO003_M1-panel_call
MYC PRO003_M1-panel_call
NCOR1 PRO003_M1-panel_call
NKX3-1 PRO003_M1-panel_call
PALB2 PRO003_M1-panel_call
PARP1 PRO003_M1-panel_call
PIK3CA PRO003_M1-panel_call
PIK3CB PRO003_M1-panel_call
PRKDC PRO003_M1-panel_call
PTEN PRO003_M1-panel_call
RAD50 PRO003_M1-panel_call
RAD51 PRO003_M1-panel_call
RAD51B PRO003_M1-panel_call
RAD51C PRO003_M1-panel_call
RAD51D PRO003_M1-panel_call
RB1 PRO003_M1-panel_call
SPOP PRO003_M1-panel_call
TP53 PRO003_M1-panel_call
AKT1 PRO003_M1-qdnaseq_call LOSS
APC PRO003_M1-qdnaseq_call NEUTRAL
AR PRO003_M1-qdnaseq_call NEUTRAL
ARID1A PRO003_M1-qdnaseq_call NEUTRAL
ATM PRO003_M1-qdnaseq_call NEUTRAL
ATR PRO003_M1-qdnaseq_call AMP
B2M PRO003_M1-qdnaseq_call NEUTRAL
BAP1 PRO003_M1-qdnaseq_call GAIN
BARD1 PRO003_M1-qdnaseq_call NEUTRAL
BLM PRO003_M1-qdnaseq_call NEUTRAL
BRAF PRO003_M1-qdnaseq_call GAIN
BRCA1 PRO003_M1-qdnaseq_call GAIN
BRCA2 PRO003_M1-qdnaseq_call NEUTRAL
BRIP1 PRO003_M1-qdnaseq_call GAIN
CCND1 PRO003_M1-qdnaseq_call LOSS
CDK12 PRO003_M1-qdnaseq_call GAIN
CDK4 PRO003_M1-qdnaseq_call GAIN
CDK6 PRO003_M1-qdnaseq_call GAIN
CDKN2A PRO003_M1-qdnaseq_call NEUTRAL
CDKN2B PRO003_M1-qdnaseq_call NEUTRAL
CHEK1 PRO003_M1-qdnaseq_call NEUTRAL
CHEK2 PRO003_M1-qdnaseq_call NEUTRAL
CTNNB1 PRO003_M1-qdnaseq_call NEUTRAL
EGFR PRO003_M1-qdnaseq_call GAIN
EP300 PRO003_M1-qdnaseq_call NEUTRAL
ERCC2 PRO003_M1-qdnaseq_call NEUTRAL
ERCC5 PRO003_M1-qdnaseq_call LOSS
ERG PRO003_M1-qdnaseq_call NEUTRAL
ETV1 PRO003_M1-qdnaseq_call NEUTRAL
ETV6 PRO003_M1-qdnaseq_call GAIN
FANCA PRO003_M1-qdnaseq_call NEUTRAL
FOXA1 PRO003_M1-qdnaseq_call
KDM5A PRO003_M1-qdnaseq_call NEUTRAL
KDM6A PRO003_M1-qdnaseq_call NEUTRAL
KMT2C PRO003_M1-qdnaseq_call NEUTRAL
KMT2D PRO003_M1-qdnaseq_call GAIN
MDM2 PRO003_M1-qdnaseq_call NEUTRAL
MET PRO003_M1-qdnaseq_call GAIN
MLH1 PRO003_M1-qdnaseq_call GAIN
MSH2 PRO003_M1-qdnaseq_call GAIN
MSH6 PRO003_M1-qdnaseq_call GAIN
MUTYH PRO003_M1-qdnaseq_call GAIN
MYC PRO003_M1-qdnaseq_call GAIN
NCOR1 PRO003_M1-qdnaseq_call NEUTRAL
NKX3-1 PRO003_M1-qdnaseq_call LOSS
PALB2 PRO003_M1-qdnaseq_call NEUTRAL
PARP1 PRO003_M1-qdnaseq_call GAIN
PIK3CA PRO003_M1-qdnaseq_call GAIN
PIK3CB PRO003_M1-qdnaseq_call GAIN
PRKDC PRO003_M1-qdnaseq_call GAIN
PTEN PRO003_M1-qdnaseq_call GAIN
RAD50 PRO003_M1-qdnaseq_call NEUTRAL
RAD51 PRO003_M1-qdnaseq_call NEUTRAL
RAD51B PRO003_M1-qdnaseq_call GAIN
RAD51C PRO003_M1-qdnaseq_call GAIN
RAD51D PRO003_M1-qdnaseq_call NEUTRAL
RB1 PRO003_M1-qdnaseq_call GAIN
SPOP PRO003_M1-qdnaseq_call GAIN
TP53 PRO003_M1-qdnaseq_call NEUTRAL
AKT1 PRO006_VH-cnvkit_call LOSS
APC PRO006_VH-cnvkit_call LOSS
AR PRO006_VH-cnvkit_call NEUTRAL
ARID1A PRO006_VH-cnvkit_call NEUTRAL
ATM PRO006_VH-cnvkit_call NEUTRAL
ATR PRO006_VH-cnvkit_call NEUTRAL
B2M PRO006_VH-cnvkit_call NEUTRAL
BAP1 PRO006_VH-cnvkit_call NEUTRAL
BARD1 PRO006_VH-cnvkit_call NEUTRAL
BLM PRO006_VH-cnvkit_call LOSS
BRAF PRO006_VH-cnvkit_call GAIN
BRCA1 PRO006_VH-cnvkit_call NEUTRAL
BRCA2 PRO006_VH-cnvkit_call NEUTRAL
BRIP1 PRO006_VH-cnvkit_call NEUTRAL
CCND1 PRO006_VH-cnvkit_call NEUTRAL
CDK12 PRO006_VH-cnvkit_call NEUTRAL
CDK4 PRO006_VH-cnvkit_call NEUTRAL
CDK6 PRO006_VH-cnvkit_call GAIN
CDKN2A PRO006_VH-cnvkit_call LOSS
CDKN2B PRO006_VH-cnvkit_call
CHEK1 PRO006_VH-cnvkit_call NEUTRAL
CHEK2 PRO006_VH-cnvkit_call LOSS
CTNNB1 PRO006_VH-cnvkit_call NEUTRAL
EGFR PRO006_VH-cnvkit_call NEUTRAL
EP300 PRO006_VH-cnvkit_call LOSS
ERCC2 PRO006_VH-cnvkit_call NEUTRAL
ERCC5 PRO006_VH-cnvkit_call NEUTRAL
ERG PRO006_VH-cnvkit_call NEUTRAL
ETV1 PRO006_VH-cnvkit_call NEUTRAL
ETV6 PRO006_VH-cnvkit_call NEUTRAL
FANCA PRO006_VH-cnvkit_call LOSS
FOXA1 PRO006_VH-cnvkit_call NEUTRAL
KDM5A PRO006_VH-cnvkit_call NEUTRAL
KDM6A PRO006_VH-cnvkit_call NEUTRAL
KMT2C PRO006_VH-cnvkit_call LOSS
KMT2D PRO006_VH-cnvkit_call NEUTRAL
MDM2 PRO006_VH-cnvkit_call NEUTRAL
MET PRO006_VH-cnvkit_call LOSS
MLH1 PRO006_VH-cnvkit_call NEUTRAL
MSH2 PRO006_VH-cnvkit_call NEUTRAL
MSH6 PRO006_VH-cnvkit_call NEUTRAL
MUTYH PRO006_VH-cnvkit_call NEUTRAL
MYC PRO006_VH-cnvkit_call NEUTRAL
NCOR1 PRO006_VH-cnvkit_call NEUTRAL
NKX3-1 PRO006_VH-cnvkit_call LOSS
PALB2 PRO006_VH-cnvkit_call LOSS
PARP1 PRO006_VH-cnvkit_call NEUTRAL
PIK3CA PRO006_VH-cnvkit_call NEUTRAL
PIK3CB PRO006_VH-cnvkit_call NEUTRAL
PRKDC PRO006_VH-cnvkit_call NEUTRAL
PTEN PRO006_VH-cnvkit_call NEUTRAL
RAD50 PRO006_VH-cnvkit_call NEUTRAL
RAD51 PRO006_VH-cnvkit_call NEUTRAL
RAD51B PRO006_VH-cnvkit_call NEUTRAL
RAD51C PRO006_VH-cnvkit_call NEUTRAL
RAD51D PRO006_VH-cnvkit_call NEUTRAL
RB1 PRO006_VH-cnvkit_call LOSS
SPOP PRO006_VH-cnvkit_call NEUTRAL
TP53 PRO006_VH-cnvkit_call NEUTRAL
AKT1 PRO006_VH-DNAcopy_call
APC PRO006_VH-DNAcopy_call
AR PRO006_VH-DNAcopy_call NEUTRAL
ARID1A PRO006_VH-DNAcopy_call GAIN
ATM PRO006_VH-DNAcopy_call AMP
ATR PRO006_VH-DNAcopy_call AMP
B2M PRO006_VH-DNAcopy_call
BAP1 PRO006_VH-DNAcopy_call LOSS
BARD1 PRO006_VH-DNAcopy_call
BLM PRO006_VH-DNAcopy_call
BRAF PRO006_VH-DNAcopy_call GAIN
BRCA1 PRO006_VH-DNAcopy_call
BRCA2 PRO006_VH-DNAcopy_call GAIN
BRIP1 PRO006_VH-DNAcopy_call
CCND1 PRO006_VH-DNAcopy_call
CDK12 PRO006_VH-DNAcopy_call GAIN
CDK4 PRO006_VH-DNAcopy_call GAIN
CDK6 PRO006_VH-DNAcopy_call AMP
CDKN2A PRO006_VH-DNAcopy_call LOSS
CDKN2B PRO006_VH-DNAcopy_call LOSS
CHEK1 PRO006_VH-DNAcopy_call GAIN
CHEK2 PRO006_VH-DNAcopy_call LOSS
CTNNB1 PRO006_VH-DNAcopy_call
EGFR PRO006_VH-DNAcopy_call GAIN
EP300 PRO006_VH-DNAcopy_call
ERCC2 PRO006_VH-DNAcopy_call LOSS
ERCC5 PRO006_VH-DNAcopy_call
ERG PRO006_VH-DNAcopy_call
ETV1 PRO006_VH-DNAcopy_call GAIN
ETV6 PRO006_VH-DNAcopy_call GAIN
FANCA PRO006_VH-DNAcopy_call
FOXA1 PRO006_VH-DNAcopy_call AMP
KDM5A PRO006_VH-DNAcopy_call NEUTRAL
KDM6A PRO006_VH-DNAcopy_call GAIN
KMT2C PRO006_VH-DNAcopy_call LOSS
KMT2D PRO006_VH-DNAcopy_call GAIN
MDM2 PRO006_VH-DNAcopy_call GAIN
MET PRO006_VH-DNAcopy_call LOSS
MLH1 PRO006_VH-DNAcopy_call AMP
MSH2 PRO006_VH-DNAcopy_call
MSH6 PRO006_VH-DNAcopy_call
MUTYH PRO006_VH-DNAcopy_call
MYC PRO006_VH-DNAcopy_call GAIN
NCOR1 PRO006_VH-DNAcopy_call GAIN
NKX3-1 PRO006_VH-DNAcopy_call GAIN
PALB2 PRO006_VH-DNAcopy_call
PARP1 PRO006_VH-DNAcopy_call
PIK3CA PRO006_VH-DNAcopy_call GAIN
PIK3CB PRO006_VH-DNAcopy_call GAIN
PRKDC PRO006_VH-DNAcopy_call
PTEN PRO006_VH-DNAcopy_call GAIN
RAD50 PRO006_VH-DNAcopy_call
RAD51 PRO006_VH-DNAcopy_call
RAD51B PRO006_VH-DNAcopy_call AMP
RAD51C PRO006_VH-DNAcopy_call
RAD51D PRO006_VH-DNAcopy_call
RB1 PRO006_VH-DNAcopy_call
SPOP PRO006_VH-DNAcopy_call
TP53 PRO006_VH-DNAcopy_call
AKT1 PRO006_VH-ichorcna_call NEUTRAL
APC PRO006_VH-ichorcna_call LOSS
AR PRO006_VH-ichorcna_call NEUTRAL
ARID1A PRO006_VH-ichorcna_call NEUTRAL
ATM PRO006_VH-ichorcna_call NEUTRAL
ATR PRO006_VH-ichorcna_call NEUTRAL
B2M PRO006_VH-ichorcna_call NEUTRAL
BAP1 PRO006_VH-ichorcna_call NEUTRAL
BARD1 PRO006_VH-ichorcna_call NEUTRAL
BLM PRO006_VH-ichorcna_call LOSS
BRAF PRO006_VH-ichorcna_call GAIN
BRCA1 PRO006_VH-ichorcna_call NEUTRAL
BRCA2 PRO006_VH-ichorcna_call NEUTRAL
BRIP1 PRO006_VH-ichorcna_call NEUTRAL
CCND1 PRO006_VH-ichorcna_call GAIN
CDK12 PRO006_VH-ichorcna_call NEUTRAL
CDK4 PRO006_VH-ichorcna_call NEUTRAL
CDK6 PRO006_VH-ichorcna_call GAIN
CDKN2A PRO006_VH-ichorcna_call LOSS
CDKN2B PRO006_VH-ichorcna_call LOSS
CHEK1 PRO006_VH-ichorcna_call NEUTRAL
CHEK2 PRO006_VH-ichorcna_call LOSS
CTNNB1 PRO006_VH-ichorcna_call NEUTRAL
EGFR PRO006_VH-ichorcna_call NEUTRAL
EP300 PRO006_VH-ichorcna_call LOSS
ERCC2 PRO006_VH-ichorcna_call NEUTRAL
ERCC5 PRO006_VH-ichorcna_call NEUTRAL
ERG PRO006_VH-ichorcna_call NEUTRAL
ETV1 PRO006_VH-ichorcna_call NEUTRAL
ETV6 PRO006_VH-ichorcna_call NEUTRAL
FANCA PRO006_VH-ichorcna_call LOSS
FOXA1 PRO006_VH-ichorcna_call NEUTRAL
KDM5A PRO006_VH-ichorcna_call
KDM6A PRO006_VH-ichorcna_call NEUTRAL
KMT2C PRO006_VH-ichorcna_call LOSS
KMT2D PRO006_VH-ichorcna_call NEUTRAL
MDM2 PRO006_VH-ichorcna_call NEUTRAL
MET PRO006_VH-ichorcna_call LOSS
MLH1 PRO006_VH-ichorcna_call NEUTRAL
MSH2 PRO006_VH-ichorcna_call NEUTRAL
MSH6 PRO006_VH-ichorcna_call NEUTRAL
MUTYH PRO006_VH-ichorcna_call NEUTRAL
MYC PRO006_VH-ichorcna_call NEUTRAL
NCOR1 PRO006_VH-ichorcna_call NEUTRAL
NKX3-1 PRO006_VH-ichorcna_call LOSS
PALB2 PRO006_VH-ichorcna_call NEUTRAL
PARP1 PRO006_VH-ichorcna_call NEUTRAL
PIK3CA PRO006_VH-ichorcna_call GAIN
PIK3CB PRO006_VH-ichorcna_call NEUTRAL
PRKDC PRO006_VH-ichorcna_call NEUTRAL
PTEN PRO006_VH-ichorcna_call NEUTRAL
RAD50 PRO006_VH-ichorcna_call NEUTRAL
RAD51 PRO006_VH-ichorcna_call NEUTRAL
RAD51B PRO006_VH-ichorcna_call NEUTRAL
RAD51C PRO006_VH-ichorcna_call NEUTRAL
RAD51D PRO006_VH-ichorcna_call NEUTRAL
RB1 PRO006_VH-ichorcna_call LOSS
SPOP PRO006_VH-ichorcna_call NEUTRAL
TP53 PRO006_VH-ichorcna_call NEUTRAL
AKT1 PRO006_VH-panel_call
APC PRO006_VH-panel_call
AR PRO006_VH-panel_call
ARID1A PRO006_VH-panel_call
ATM PRO006_VH-panel_call
ATR PRO006_VH-panel_call
B2M PRO006_VH-panel_call
BAP1 PRO006_VH-panel_call
BARD1 PRO006_VH-panel_call
BLM PRO006_VH-panel_call
BRAF PRO006_VH-panel_call
BRCA1 PRO006_VH-panel_call
BRCA2 PRO006_VH-panel_call
BRIP1 PRO006_VH-panel_call
CCND1 PRO006_VH-panel_call
CDK12 PRO006_VH-panel_call
CDK4 PRO006_VH-panel_call
CDK6 PRO006_VH-panel_call
CDKN2A PRO006_VH-panel_call
CDKN2B PRO006_VH-panel_call
CHEK1 PRO006_VH-panel_call
CHEK2 PRO006_VH-panel_call
CTNNB1 PRO006_VH-panel_call
EGFR PRO006_VH-panel_call
EP300 PRO006_VH-panel_call
ERCC2 PRO006_VH-panel_call
ERCC5 PRO006_VH-panel_call
ERG PRO006_VH-panel_call
ETV1 PRO006_VH-panel_call
ETV6 PRO006_VH-panel_call
FANCA PRO006_VH-panel_call
FOXA1 PRO006_VH-panel_call
KDM5A PRO006_VH-panel_call
KDM6A PRO006_VH-panel_call
KMT2C PRO006_VH-panel_call
KMT2D PRO006_VH-panel_call
MDM2 PRO006_VH-panel_call
MET PRO006_VH-panel_call
MLH1 PRO006_VH-panel_call
MSH2 PRO006_VH-panel_call
MSH6 PRO006_VH-panel_call
MUTYH PRO006_VH-panel_call
MYC PRO006_VH-panel_call
NCOR1 PRO006_VH-panel_call
NKX3-1 PRO006_VH-panel_call
PALB2 PRO006_VH-panel_call
PARP1 PRO006_VH-panel_call
PIK3CA PRO006_VH-panel_call
PIK3CB PRO006_VH-panel_call
PRKDC PRO006_VH-panel_call
PTEN PRO006_VH-panel_call
RAD50 PRO006_VH-panel_call
RAD51 PRO006_VH-panel_call
RAD51B PRO006_VH-panel_call
RAD51C PRO006_VH-panel_call
RAD51D PRO006_VH-panel_call
RB1 PRO006_VH-panel_call
SPOP PRO006_VH-panel_call
TP53 PRO006_VH-panel_call
AKT1 PRO006_VH-qdnaseq_call NEUTRAL
APC PRO006_VH-qdnaseq_call LOSS
AR PRO006_VH-qdnaseq_call NEUTRAL
ARID1A PRO006_VH-qdnaseq_call NEUTRAL
ATM PRO006_VH-qdnaseq_call GAIN
ATR PRO006_VH-qdnaseq_call GAIN
B2M PRO006_VH-qdnaseq_call GAIN
BAP1 PRO006_VH-qdnaseq_call NEUTRAL
BARD1 PRO006_VH-qdnaseq_call GAIN
BLM PRO006_VH-qdnaseq_call NEUTRAL
BRAF PRO006_VH-qdnaseq_call GAIN
BRCA1 PRO006_VH-qdnaseq_call NEUTRAL
BRCA2 PRO006_VH-qdnaseq_call GAIN
BRIP1 PRO006_VH-qdnaseq_call GAIN
CCND1 PRO006_VH-qdnaseq_call NEUTRAL
CDK12 PRO006_VH-qdnaseq_call NEUTRAL
CDK4 PRO006_VH-qdnaseq_call GAIN
CDK6 PRO006_VH-qdnaseq_call AMP
CDKN2A PRO006_VH-qdnaseq_call NEUTRAL
CDKN2B PRO006_VH-qdnaseq_call NEUTRAL
CHEK1 PRO006_VH-qdnaseq_call NEUTRAL
CHEK2 PRO006_VH-qdnaseq_call NEUTRAL
CTNNB1 PRO006_VH-qdnaseq_call NEUTRAL
EGFR PRO006_VH-qdnaseq_call NEUTRAL
EP300 PRO006_VH-qdnaseq_call LOSS
ERCC2 PRO006_VH-qdnaseq_call NEUTRAL
ERCC5 PRO006_VH-qdnaseq_call GAIN
ERG PRO006_VH-qdnaseq_call NEUTRAL
ETV1 PRO006_VH-qdnaseq_call GAIN
ETV6 PRO006_VH-qdnaseq_call GAIN
FANCA PRO006_VH-qdnaseq_call LOSS
FOXA1 PRO006_VH-qdnaseq_call AMP
KDM5A PRO006_VH-qdnaseq_call GAIN
KDM6A PRO006_VH-qdnaseq_call NEUTRAL
KMT2C PRO006_VH-qdnaseq_call NEUTRAL
KMT2D PRO006_VH-qdnaseq_call GAIN
MDM2 PRO006_VH-qdnaseq_call GAIN
MET PRO006_VH-qdnaseq_call LOSS
MLH1 PRO006_VH-qdnaseq_call GAIN
MSH2 PRO006_VH-qdnaseq_call GAIN
MSH6 PRO006_VH-qdnaseq_call GAIN
MUTYH PRO006_VH-qdnaseq_call GAIN
MYC PRO006_VH-qdnaseq_call NEUTRAL
NCOR1 PRO006_VH-qdnaseq_call NEUTRAL
NKX3-1 PRO006_VH-qdnaseq_call LOSS
PALB2 PRO006_VH-qdnaseq_call NEUTRAL
PARP1 PRO006_VH-qdnaseq_call GAIN
PIK3CA PRO006_VH-qdnaseq_call GAIN
PIK3CB PRO006_VH-qdnaseq_call GAIN
PRKDC PRO006_VH-qdnaseq_call NEUTRAL
PTEN PRO006_VH-qdnaseq_call GAIN
RAD50 PRO006_VH-qdnaseq_call NEUTRAL
RAD51 PRO006_VH-qdnaseq_call GAIN
RAD51B PRO006_VH-qdnaseq_call GAIN
RAD51C PRO006_VH-qdnaseq_call GAIN
RAD51D PRO006_VH-qdnaseq_call NEUTRAL
RB1 PRO006_VH-qdnaseq_call GAIN
SPOP PRO006_VH-qdnaseq_call GAIN
TP53 PRO006_VH-qdnaseq_call GAIN
AKT1 PRO009_18-cnvkit_call LOSS
APC PRO009_18-cnvkit_call NEUTRAL
AR PRO009_18-cnvkit_call NEUTRAL
ARID1A PRO009_18-cnvkit_call NEUTRAL
ATM PRO009_18-cnvkit_call NEUTRAL
ATR PRO009_18-cnvkit_call NEUTRAL
B2M PRO009_18-cnvkit_call GAIN
BAP1 PRO009_18-cnvkit_call GAIN
BARD1 PRO009_18-cnvkit_call LOSS
BLM PRO009_18-cnvkit_call NEUTRAL
BRAF PRO009_18-cnvkit_call NEUTRAL
BRCA1 PRO009_18-cnvkit_call NEUTRAL
BRCA2 PRO009_18-cnvkit_call NEUTRAL
BRIP1 PRO009_18-cnvkit_call NEUTRAL
CCND1 PRO009_18-cnvkit_call GAIN
CDK12 PRO009_18-cnvkit_call NEUTRAL
CDK4 PRO009_18-cnvkit_call GAIN
CDK6 PRO009_18-cnvkit_call NEUTRAL
CDKN2A PRO009_18-cnvkit_call NEUTRAL
CDKN2B PRO009_18-cnvkit_call
CHEK1 PRO009_18-cnvkit_call LOSS
CHEK2 PRO009_18-cnvkit_call GAIN
CTNNB1 PRO009_18-cnvkit_call NEUTRAL
EGFR PRO009_18-cnvkit_call NEUTRAL
EP300 PRO009_18-cnvkit_call NEUTRAL
ERCC2 PRO009_18-cnvkit_call LOSS
ERCC5 PRO009_18-cnvkit_call NEUTRAL
ERG PRO009_18-cnvkit_call NEUTRAL
ETV1 PRO009_18-cnvkit_call NEUTRAL
ETV6 PRO009_18-cnvkit_call GAIN
FANCA PRO009_18-cnvkit_call NEUTRAL
FOXA1 PRO009_18-cnvkit_call NEUTRAL
KDM5A PRO009_18-cnvkit_call GAIN
KDM6A PRO009_18-cnvkit_call NEUTRAL
KMT2C PRO009_18-cnvkit_call NEUTRAL
KMT2D PRO009_18-cnvkit_call NEUTRAL
MDM2 PRO009_18-cnvkit_call NEUTRAL
MET PRO009_18-cnvkit_call NEUTRAL
MLH1 PRO009_18-cnvkit_call NEUTRAL
MSH2 PRO009_18-cnvkit_call NEUTRAL
MSH6 PRO009_18-cnvkit_call NEUTRAL
MUTYH PRO009_18-cnvkit_call NEUTRAL
MYC PRO009_18-cnvkit_call NEUTRAL
NCOR1 PRO009_18-cnvkit_call NEUTRAL
NKX3-1 PRO009_18-cnvkit_call NEUTRAL
PALB2 PRO009_18-cnvkit_call LOSS
PARP1 PRO009_18-cnvkit_call NEUTRAL
PIK3CA PRO009_18-cnvkit_call NEUTRAL
PIK3CB PRO009_18-cnvkit_call NEUTRAL
PRKDC PRO009_18-cnvkit_call NEUTRAL
PTEN PRO009_18-cnvkit_call NEUTRAL
RAD50 PRO009_18-cnvkit_call NEUTRAL
RAD51 PRO009_18-cnvkit_call NEUTRAL
RAD51B PRO009_18-cnvkit_call NEUTRAL
RAD51C PRO009_18-cnvkit_call NEUTRAL
RAD51D PRO009_18-cnvkit_call NEUTRAL
RB1 PRO009_18-cnvkit_call GAIN
SPOP PRO009_18-cnvkit_call NEUTRAL
TP53 PRO009_18-cnvkit_call GAIN
AKT1 PRO009_18-DNAcopy_call NEUTRAL
APC PRO009_18-DNAcopy_call GAIN
AR PRO009_18-DNAcopy_call NEUTRAL
ARID1A PRO009_18-DNAcopy_call
ATM PRO009_18-DNAcopy_call AMP
ATR PRO009_18-DNAcopy_call GAIN
B2M PRO009_18-DNAcopy_call
BAP1 PRO009_18-DNAcopy_call
BARD1 PRO009_18-DNAcopy_call
BLM PRO009_18-DNAcopy_call GAIN
BRAF PRO009_18-DNAcopy_call
BRCA1 PRO009_18-DNAcopy_call
BRCA2 PRO009_18-DNAcopy_call
BRIP1 PRO009_18-DNAcopy_call LOSS
CCND1 PRO009_18-DNAcopy_call GAIN
CDK12 PRO009_18-DNAcopy_call GAIN
CDK4 PRO009_18-DNAcopy_call GAIN
CDK6 PRO009_18-DNAcopy_call GAIN
CDKN2A PRO009_18-DNAcopy_call
CDKN2B PRO009_18-DNAcopy_call GAIN
CHEK1 PRO009_18-DNAcopy_call GAIN
CHEK2 PRO009_18-DNAcopy_call NEUTRAL
CTNNB1 PRO009_18-DNAcopy_call
EGFR PRO009_18-DNAcopy_call
EP300 PRO009_18-DNAcopy_call AMP
ERCC2 PRO009_18-DNAcopy_call LOSS
ERCC5 PRO009_18-DNAcopy_call
ERG PRO009_18-DNAcopy_call
ETV1 PRO009_18-DNAcopy_call
ETV6 PRO009_18-DNAcopy_call
FANCA PRO009_18-DNAcopy_call GAIN
FOXA1 PRO009_18-DNAcopy_call
KDM5A PRO009_18-DNAcopy_call
KDM6A PRO009_18-DNAcopy_call GAIN
KMT2C PRO009_18-DNAcopy_call
KMT2D PRO009_18-DNAcopy_call GAIN
MDM2 PRO009_18-DNAcopy_call GAIN
MET PRO009_18-DNAcopy_call
MLH1 PRO009_18-DNAcopy_call GAIN
MSH2 PRO009_18-DNAcopy_call GAIN
MSH6 PRO009_18-DNAcopy_call
MUTYH PRO009_18-DNAcopy_call GAIN
MYC PRO009_18-DNAcopy_call
NCOR1 PRO009_18-DNAcopy_call GAIN
NKX3-1 PRO009_18-DNAcopy_call
PALB2 PRO009_18-DNAcopy_call
PARP1 PRO009_18-DNAcopy_call
PIK3CA PRO009_18-DNAcopy_call
PIK3CB PRO009_18-DNAcopy_call
PRKDC PRO009_18-DNAcopy_call
PTEN PRO009_18-DNAcopy_call AMP
RAD50 PRO009_18-DNAcopy_call GAIN
RAD51 PRO009_18-DNAcopy_call
RAD51B PRO009_18-DNAcopy_call AMP
RAD51C PRO009_18-DNAcopy_call