From 377b6d3377e76a38f18c3ef57e4593b616017125 Mon Sep 17 00:00:00 2001 From: Sean Anderson Date: Wed, 18 Oct 2023 14:47:19 -0700 Subject: [PATCH] News + version --- DESCRIPTION | 4 ++-- NEWS.md | 25 +++++++++++++++++++++++-- 2 files changed, 25 insertions(+), 4 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index f426ebd22..3b371d1e7 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Type: Package Package: sdmTMB Title: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB' -Version: 0.3.1.9002 +Version: 0.4.0 Authors@R: c( person(c("Sean", "C."), "Anderson", , "sean@seananderson.ca", role = c("aut", "cre"), @@ -110,4 +110,4 @@ Encoding: UTF-8 LazyData: true Roxygen: list(markdown = TRUE) RoxygenNote: 7.2.3 -SystemRequirements: GNU make, C++17 +SystemRequirements: GNU make diff --git a/NEWS.md b/NEWS.md index 7fcd9bd7a..976478d32 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,13 +1,34 @@ -# sdmTMB (development version) +# sdmTMB 0.4.0 -* Add new anisotropy plotting function. +* Move add_barrier_mesh() to sdmTMBextra to avoid final INLA dependency. + https://github.com/pbs-assess/sdmTMBextra * Switch to using the new fmesher package for all mesh/SPDE calculations. INLA is no longer a dependency. + +* Switch to `diagonal.penalty = FALSE` in mgcv::smoothCon(). + This changes the scale of the linear component of the smoother, but + should result in the same model. + https://github.com/glmmTMB/glmmTMB/issues/928#issuecomment-1642862066 + +* Implement cross validation for delta models #239 + +* Remove ELPD from cross validation output. Use sum_loglik instead. #235 + +* Turn on Newton optimization by default. #182 + +* print() now checks sanity() and issues a warning if there may be issues. #176 + +* Poisson-link delta models and censored likelihood distributions have been made + considerably more robust. #186 + +* Standard errors are now available on SD parameters etc. in tidy() #240 * Fix bug in print()/tidy() for delta-model positive model component sigma_E. A recently introduce bug was causing sigma_E for the 2nd model to be reported as the 1st model component sigma_E. + +* Add new anisotropy plotting function. * Add anisotropic range printing. #149 by @jdunic