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20 Open 1 Closed
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Issues list

poly-G trimming with Fastp
#26 opened Aug 14, 2024 by OksanaVe
Update BLAST+ to latest version for compatibility with latest releases of NCBI nt
#25 opened Aug 5, 2022 by peterk87
Fastp process exceeding running time limit
#23 opened Jul 12, 2021 by mnebroski
3
Option for SISPA tag trimming step in workflow
#21 opened Aug 6, 2020 by MatFish
6
Automatically run blast2xl on blast output of villumina
#20 opened Aug 6, 2020 by MatFish
Pipeline execution error - Invalid method call
#19 opened Jun 11, 2020 by mnebroski
1
Add metaviralSPAdes assembly
#18 opened May 19, 2020 by peterk87
1
Speed-up Centrifuge
#17 opened May 8, 2020 by peterk87
Protein-level assembly with PLASS
#14 opened Feb 5, 2020 by peterk87
Flag and skip tiny read sets improvement Idea for improving existing functionality
#11 opened Oct 4, 2019 by peterk87
@peterk87
Automatically run IRMA workflow if Influenza virus reads detected
#10 opened Sep 4, 2019 by peterk87
Add process for BLAST against user specified DB and BLAST report generation
#9 opened Sep 4, 2019 by peterk87
1 of 2 tasks
2
Investigate CAP3 for potential assembly improvement
#8 opened Sep 4, 2019 by peterk87
Add Krona graph output of all classification results for all samples
#7 opened Sep 4, 2019 by peterk87
Add Sankey visualization of classification results feature Idea for a feature ux User experience enhancement viz Visualization outputs!
#6 opened Sep 4, 2019 by peterk87
Add Kaiju classification feature Idea for a feature
#5 opened Sep 4, 2019 by peterk87
Add reference mapping, variant calling and consensus sequence generation feature Idea for a feature improvement Idea for improving existing functionality
#4 opened Sep 4, 2019 by peterk87
Add tiny test dataset and Kraken2/Centrifuge DBs for CI testing Testing related issues and enhancements
#3 opened Sep 4, 2019 by peterk87
Add support for single end reads improvement Idea for improving existing functionality ux User experience enhancement
#2 opened Sep 4, 2019 by peterk87
2 tasks
Update docs docs Documentation related issue
#1 opened Sep 4, 2019 by peterk87
ProTip! Exclude everything labeled bug with -label:bug.