-
Notifications
You must be signed in to change notification settings - Fork 19
Dictionary Plant Secondary Metabolites
Plant Secondary Metabolites DICTIONARY:
-
Presently, 2957 plant secondary metabolites are in dictionary. I have to remove few duplicates. Please, find dictionary.
-
I used wikipedia page (https://en.wikipedia.org/wiki/Secondary_metabolite#Plant_secondary_metabolites) to find out only name of plant secondary metabolites. Most of the Wikidata IDs were searched manually. I also used following SPARQL queries
SELECT ?instance_of ?instance_ofLabel WHERE {
SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
?instance_of wdt:P31 wd:Q11173.
?instance_of wdt:P31 wd:Q331818.}
(replacing wd:Q331818 with wd:Q70702, wd:Q32528, wd:Q80218, wd:Q3234924 and wd:Q222174)
-
I searched papers (supplementary data) of genome wide association studies of Arabidopsis and Rice as well as Tomato (Introgression Lines) (Alseekh et al., 2015; Matsuda et al., 2014; Wu et al., 2018).
(https://academic.oup.com/plcell/article/27/3/485/6118131,https://www.pnas.org/content/110/50/20320,
-
Here, we are focusing on only plant secondary metabolites.
-
There are natural product databases available. However, they contain microbial natural products also and some such databases require subscription and are not open access (https://webs.iiitd.edu.in/raghava/npact/browse.php , https://www.eurekaselect.com/121572/article).