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Convert TL to FL for historical Miller datasets
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Closes #30
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@brianlangseth-NOAA
brianlangseth-NOAA committed Jan 3, 2025
1 parent dbee925 commit c4401c9
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7 changes: 5 additions & 2 deletions code/recfin_processing.R
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Original file line number Diff line number Diff line change
Expand Up @@ -1118,7 +1118,8 @@ milgot_bio <- milgot_bio %>% tidyr::uncount(Count)

## Simplify variables

milgot_bio$length_cm <- milgot_bio$Length..cm.
#Lengths are in TL. Convert to FL using conversion (in mm) from echeverria and lenarz 1984
milgot_bio$length_cm <- (9.075 + 0.965 * milgot_bio$Length..cm. * 10)/10
milgot_bio$weight_kg <- NA
#Replace port with district
milgot_bio$area <- dplyr::case_when(milgot_bio$Port == "Bodega Bay" ~ "Bay",
Expand Down Expand Up @@ -1178,7 +1179,8 @@ milgei_bio <- milgei_bio %>% tidyr::uncount(NUMBER_OF_FISH)

## Simplify variables

milgei_bio$length_cm <- milgei_bio$LENGTH/10
#Lengths are in TL. Convert to FL using conversion from echeverria and lenarz 1984
milgei_bio$length_cm <- (9.075 + 0.965 * milgei_bio$LENGTH)/10
milgei_bio$weight_kg <- NA
#Replace port with district
milgei_bio$area <- dplyr::case_when(milgei_bio$Counties == "DelNorte_Humboldt" ~ "Redwood",
Expand Down Expand Up @@ -1303,6 +1305,7 @@ table(geicol_bio$LENGTH)

## Simplify variables

#According to report, measurements were as fork length
geicol_bio$length_cm <- geicol_bio$LENGTH/10
geicol_bio$weight_kg <- NA

Expand Down
180 changes: 90 additions & 90 deletions data/CAquillback_historical_bio.csv
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Original file line number Diff line number Diff line change
@@ -1,91 +1,91 @@
"Year","length_cm","weight_kg","sex","area","mode","disp","source","tripID"
1960,37,NA,"U","Bay","PC","RETAINED","MilGot","1960AprilBodega BayPC"
1960,44,NA,"U","Bay","PC","RETAINED","MilGot","1960AprilBodega BayPC"
1960,39,NA,"U","Bay","PC","RETAINED","MilGot","1960AugustBodega BayPC"
1960,43,NA,"U","Bay","PC","RETAINED","MilGot","1960AugustBodega BayPC"
1960,44,NA,"U","Bay","PC","RETAINED","MilGot","1960AugustBodega BayPC"
1960,45,NA,"U","Bay","PC","RETAINED","MilGot","1960AugustBodega BayPC"
1960,49,NA,"U","Bay","PC","RETAINED","MilGot","1960AugustBodega BayPC"
1960,29,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,30,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,36,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,38,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,38,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,42,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,46,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,46,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,35,NA,"U","Bay","PC","RETAINED","MilGot","1960JulyPrincetonPC"
1960,34,NA,"U","Bay","PC","RETAINED","MilGot","1960AugustPrincetonPC"
1960,39,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberPrincetonPC"
1960,41,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberPrincetonPC"
1960,34,NA,"U","Bay","PC","RETAINED","MilGot","1960OctoberPrincetonPC"
1960,28,NA,"U","Bay","PR","RETAINED","MilGot","1960SeptemberBodega BayPR"
1960,30,NA,"U","Bay","PR","RETAINED","MilGot","1960SeptemberBodega BayPR"
1959,52,NA,"U","Wine","PR","RETAINED","MilGot","1959JuneFt. BraggPR"
1959,46,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberFt. BraggPR"
1959,48,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberFt. BraggPR"
1959,41,NA,"U","Wine","PR","RETAINED","MilGot","1959JulyShelter CovePR"
1959,42,NA,"U","Wine","PR","RETAINED","MilGot","1959AugustShelter CovePR"
1959,40,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberShelter CovePR"
1959,41,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberShelter CovePR"
1959,43,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberShelter CovePR"
1959,45,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberShelter CovePR"
1959,47,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberShelter CovePR"
1959,48,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberShelter CovePR"
1959,42.3,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,43.8,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,44.3,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,45.3,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,45.3,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,45.3,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,46.8,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,47.8,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,48.3,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,48.8,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,49.3,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,49.8,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,40.3,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,41.3,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,41.8,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,41.8,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,42.8,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,43.3,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,45.3,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,47.3,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,48.8,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,27.8,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,34.3,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,34.8,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,36.3,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,37.3,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,39.3,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,41.8,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,42.8,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,43.3,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,43.3,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,43.8,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,45.8,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,47.8,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1960,34.3,NA,"U","Bay","PC","RETAINED","MilGei","1960SanFranciscoBayPC"
1960,34.8,NA,"U","Bay","PC","RETAINED","MilGei","1960SanFranciscoBayPC"
1960,35.8,NA,"U","Bay","PC","RETAINED","MilGei","1960SanFranciscoBayPC"
1960,39.3,NA,"U","Bay","PC","RETAINED","MilGei","1960SanFranciscoBayPC"
1960,40.8,NA,"U","Bay","PC","RETAINED","MilGei","1960SanFranciscoBayPC"
1960,29.3,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,30.8,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,36.8,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,37.8,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,38.8,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,38.8,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,39.3,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,41.8,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,42.3,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,43.3,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,43.8,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,44.3,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,44.3,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,45.8,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,46.3,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,46.8,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,49.8,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,23,NA,"U","Central","PC","RETAINED","MilGei","1960SantaCruz_MontereyPC"
1960,36.6125,NA,"U","Bay","PC","RETAINED","MilGot","1960AprilBodega BayPC"
1960,43.3675,NA,"U","Bay","PC","RETAINED","MilGot","1960AprilBodega BayPC"
1960,38.5425,NA,"U","Bay","PC","RETAINED","MilGot","1960AugustBodega BayPC"
1960,42.4025,NA,"U","Bay","PC","RETAINED","MilGot","1960AugustBodega BayPC"
1960,43.3675,NA,"U","Bay","PC","RETAINED","MilGot","1960AugustBodega BayPC"
1960,44.3325,NA,"U","Bay","PC","RETAINED","MilGot","1960AugustBodega BayPC"
1960,48.1925,NA,"U","Bay","PC","RETAINED","MilGot","1960AugustBodega BayPC"
1960,28.8925,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,29.8575,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,35.6475,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,37.5775,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,37.5775,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,41.4375,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,45.2975,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,45.2975,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberBodega BayPC"
1960,34.6825,NA,"U","Bay","PC","RETAINED","MilGot","1960JulyPrincetonPC"
1960,33.7175,NA,"U","Bay","PC","RETAINED","MilGot","1960AugustPrincetonPC"
1960,38.5425,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberPrincetonPC"
1960,40.4725,NA,"U","Bay","PC","RETAINED","MilGot","1960SeptemberPrincetonPC"
1960,33.7175,NA,"U","Bay","PC","RETAINED","MilGot","1960OctoberPrincetonPC"
1960,27.9275,NA,"U","Bay","PR","RETAINED","MilGot","1960SeptemberBodega BayPR"
1960,29.8575,NA,"U","Bay","PR","RETAINED","MilGot","1960SeptemberBodega BayPR"
1959,51.0875,NA,"U","Wine","PR","RETAINED","MilGot","1959JuneFt. BraggPR"
1959,45.2975,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberFt. BraggPR"
1959,47.2275,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberFt. BraggPR"
1959,40.4725,NA,"U","Wine","PR","RETAINED","MilGot","1959JulyShelter CovePR"
1959,41.4375,NA,"U","Wine","PR","RETAINED","MilGot","1959AugustShelter CovePR"
1959,39.5075,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberShelter CovePR"
1959,40.4725,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberShelter CovePR"
1959,42.4025,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberShelter CovePR"
1959,44.3325,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberShelter CovePR"
1959,46.2625,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberShelter CovePR"
1959,47.2275,NA,"U","Wine","PR","RETAINED","MilGot","1959SeptemberShelter CovePR"
1959,41.727,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,43.1745,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,43.657,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,44.622,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,44.622,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,44.622,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,46.0695,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,47.0345,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,47.517,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,47.9995,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,48.482,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,48.9645,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,39.797,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,40.762,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,41.2445,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,41.2445,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,42.2095,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,42.692,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,44.622,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,46.552,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,47.9995,NA,"U","Redwood","PR","RETAINED","MilGei","1959DelNorte_HumboldtPR"
1959,27.7345,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,34.007,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,34.4895,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,35.937,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,36.902,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,38.832,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,41.2445,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,42.2095,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,42.692,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,42.692,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,43.1745,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,45.1045,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1959,47.0345,NA,"U","Wine","PR","RETAINED","MilGei","1959Mendocino_SonomaPR"
1960,34.007,NA,"U","Bay","PC","RETAINED","MilGei","1960SanFranciscoBayPC"
1960,34.4895,NA,"U","Bay","PC","RETAINED","MilGei","1960SanFranciscoBayPC"
1960,35.4545,NA,"U","Bay","PC","RETAINED","MilGei","1960SanFranciscoBayPC"
1960,38.832,NA,"U","Bay","PC","RETAINED","MilGei","1960SanFranciscoBayPC"
1960,40.2795,NA,"U","Bay","PC","RETAINED","MilGei","1960SanFranciscoBayPC"
1960,29.182,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,30.6295,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,36.4195,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,37.3845,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,38.3495,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,38.3495,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,38.832,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,41.2445,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,41.727,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,42.692,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,43.1745,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,43.657,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,43.657,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,45.1045,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,45.587,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,46.0695,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,48.9645,NA,"U","Wine","PC","RETAINED","MilGei","1960Mendocino_SonomaPC"
1960,23.1025,NA,"U","Central","PC","RETAINED","MilGei","1960SantaCruz_MontereyPC"

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