SCV2 Contextual Data Specification - Version 2.0.0 (#8)

* update template, field mappings and SOP to latest version * update readme - remove massive table, protocols linking to protocols.io * remove protocols from repo * add table of contents * add relative links in readme * update examples, add json schema * update README; Update field mappings; remove SOP -> prep for release! * Edits in the README and updated protocols.io links. * add badges Co-authored-by: Ruth Timme <[email protected]>
pha4ge · May 8, 2021 · fd66484 · fd66484
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diff --git a/PHA4GE Contextual Data SOP.docx b/PHA4GE Contextual Data SOP.docx
diff --git a/PHA4GE SARS-CoV-2 Contextual Data Template.xlsx b/PHA4GE SARS-CoV-2 Contextual Data Template.xlsx
diff --git a/PHA4GE SARS-CoV-2 EBI assembly submission protocol.pdf b/PHA4GE SARS-CoV-2 EBI assembly submission protocol.pdf
diff --git a/PHA4GE SARS-CoV-2 EBI submission protocol- ENA, BioSample, and BioProject.pdf b/PHA4GE SARS-CoV-2 EBI submission protocol- ENA, BioSample, and BioProject.pdf
diff --git a/PHA4GE SARS-CoV-2 GISAID Submission Protocol.pdf b/PHA4GE SARS-CoV-2 GISAID Submission Protocol.pdf
diff --git a/PHA4GE SARS-CoV-2 NCBI assembly submission protocol- GenBank.pdf b/PHA4GE SARS-CoV-2 NCBI assembly submission protocol- GenBank.pdf
diff --git a/PHA4GE SARS-CoV-2 NCBI submission protocol- SRA, BioSample, and BioProject.pdf b/PHA4GE SARS-CoV-2 NCBI submission protocol- SRA, BioSample, and BioProject.pdf
diff --git a/PHA4GE SARS-CoV-2 Standardised Terms.csv b/PHA4GE SARS-CoV-2 Standardised Terms.csv
diff --git a/PHA4GE SOP for populating EBI submission templates (ENA).pdf b/PHA4GE SOP for populating EBI submission templates (ENA).pdf
diff --git a/...for populating NCBI submission templates for SARS-CoV-2 (BioSample, SRA, and GenBank).pdf b/...for populating NCBI submission templates for SARS-CoV-2 (BioSample, SRA, and GenBank).pdf
diff --git a/PHA4GE to Sequence Repository Field Mappings.xlsx b/PHA4GE to Sequence Repository Field Mappings.xlsx