diff --git a/README.md b/README.md index a0277a8..cd80d2f 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,9 @@ # Primer schemes -A versioned and schematised repository of tiling amplicon PCR primer scheme definitions (created with e.g. [Primal Scheme](https://primalscheme.com)) for pathogen sequencing, made with the objective of eliminating ambiguity in scheme naming and versioning in order to facilitate accurate analysis and reuse of amplicon sequence data. +**🚨 Migration to v1 scheme specification in progress** + +A versioned and schematised community repository of tiling amplicon PCR primer scheme definitions (created with e.g. [Primal Scheme](https://primalscheme.com)) for pathogen sequencing, made with the objective of eliminating ambiguity in scheme naming and versioning to facilitate accurate analysis and reuse of amplicon sequence data. @@ -12,78 +14,49 @@ A scheme definition has three components: 1. A reference sequence ([`reference.fasta`](https://github.com/pha4ge/primer-schemes/blob/main/sars-cov-2/artic/v4.1/reference.fasta)) 2. A seven column BED file of primer sequences & positions in reference coordinates ([`primer.bed`](https://github.com/pha4ge/primer-schemes/blob/main/sars-cov-2/artic/v4.1/primer.bed)) -3. A metadata file in YAML format adhering to [this schema](https://github.com/pha4ge/primer-schemes/blob/main/schema/primer_scheme.yml) ([`info.yml`](https://github.com/pha4ge/primer-schemes/blob/main/sars-cov-2/artic/v4.1/info.yml)) +3. A metadata file in YAML format adhering to [this schema](https://github.com/pha4ge/primaschema/blob/main/src/primaschema/schema/info.yml) ([`info.yml`](https://github.com/pha4ge/primer-schemes/blob/main/schemes/sars-cov-2/artic/400/v4.1.0/info.yml)) ## Contributing new schemes -We welcome contributions of new primer schemes! We're working to make this process easier, but in the meantime please either follow the instructions below and create a pull request, or else [open a GitHub issue](https://github.com/pha4ge/primer-schemes/issues) attaching or linking to a BED file so that we can help. - -### Instructions - -1. Choose an appropriate scheme name, e.g. `schemename-v1`, where `v1` indicates the version of the scheme. Avoid including the organism name in the scheme name if possible. - -2. Create a directory named `schemename-v1` containing a text file `info.yml` containing: - ```yaml - schema_version: 0.9.0 - name: schemename-v1 - organism: sars-cov-2 - developers: - - person_name: Jane Doe - orcid: 1234-5678-9876-5432 - amplicon_size: 1200 - repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/schemename/v1 - ``` - -3. Copy your scheme's BED file into this directory, naming it `primer.bed` - -4. Copy your scheme's reference sequence into this directory, naming it `reference.fasta` -5. Optionally run `primaschema build schemename-v1/` to create a finished scheme bundle - -5. Either **open a pull request** adding your scheme directory (e.g. inside `sars-cov-2/schemename/v1`), or else **open a GitHub issue** attaching a zip file containing your scheme. +*Coming soon* ## Tooling -The companion tool [Primaschema](https://github.com/pha4ge/primaschema) can be used to validate scheme definitions and automatically checks and updates this repository via GitHub Actions. Primaschema adds primer and reference sequence checksums to `info.yml` at build time to help catch identical primer schemes. A six column scheme.bed file is also generated at build time for legacy compatibility. - - +The repository's companion tool [Primaschema](https://github.com/pha4ge/primaschema) is used to automatically validate schemes in this repository and create plots, as well as generate a six column scheme.bed for legacy tool compatibility. It can also be installed standalone. -## Documented schemes (24) -### SARS-CoV-2 (22) - - `artic-v1` - - `artic-v2` - - `artic-v3` - - `artic-v4` - - `artic-v4.1` - - `artic-v5.0.0_400` - - `artic-v5.1.0_400` - - `artic-v5.2.0_1200` - - `artic-v5.2.0_400` - - `artic-v5.3.2_400` - - `eden-v1` - - `midnight-bccdc-v1` - - `midnight-bccdc-v2` - - `midnight-bccdc-v3` - - `midnight-bccdc-v4` - - `midnight-ont-v3` - - `midnight-v1` - - `midnight-v2` - - `varskip-vsl1a` - - `varskip-vss1a` - - `varskip-vss2a` - - `varskip-vss2b` +## Scheme definitions +### MPXV +- `mpxv/yale/2000/v1.0.0` +- `mpxv/erasmus/2500/v1.0.0` -### MPXV (1) +### NIV -- `yale-v3` +- `niv/nipah/400/v1.0.0` -### NiV (1) +### SARS-CoV-2 -- `nipah-v1` +- `sars-cov-2/eden/2500/v1.0.0` +- `sars-cov-2/midnight/1200/bccdc-v1.0.0` +- `sars-cov-2/midnight/1200/bccdc-v3.0.0` +- `sars-cov-2/midnight/1200/bccdc-v2.0.0` +- `sars-cov-2/midnight/1200/bccdc-v4.0.0` +- `sars-cov-2/midnight/1200/v2.0.0` +- `sars-cov-2/midnight/1200/v1.0.0` +- `sars-cov-2/midnight/1200/ont-v3.0.0` +- `sars-cov-2/artic/400/v3.0.0` +- `sars-cov-2/artic/400/v2.0.0` +- `sars-cov-2/artic/400/v1.0.0` +- `sars-cov-2/artic/400/v5.0.0` +- `sars-cov-2/artic/400/v4.0.0` +- `sars-cov-2/artic/400/v4.1.0` +- `sars-cov-2/artic/400/v5.3.2` +- `sars-cov-2/artic/400/v5.4.2` +- `sars-cov-2/artic/400/v5.2.0` diff --git a/index.yml b/index.yml index e0af160..ca4a210 100644 --- a/index.yml +++ b/index.yml @@ -1,7 +1,6 @@ -schema_version: 0.9.0 -metadata: The PHA4GE list of tiling amplicon primer schemes +schema_version: 1.0.0-alpha +metadata: The manifest of PHA4GE tiled amplicon PCR primer scheme definitions repository: https://github.com/pha4ge/primer-schemes -latest_doi: '' license: CC-BY-4.0 organisms: - organism: sars-cov-2 @@ -17,117 +16,385 @@ organisms: aliases: - Nipah virus schemes: -- family: artic - organism: sars-cov-2 - versions: - - name: artic-v1 - display_name: artic-v1 - version: v1 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v1 - - name: artic-v2 - display_name: artic-v2 - version: v2 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v2 - - name: artic-v3 - display_name: artic-v3 - version: v3 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v3 - - name: artic-v4 - display_name: artic-v4 - version: v4 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v4 - - name: artic-v4.1 - display_name: artic-v4.1 - version: v4.1 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v4.1 - - name: artic-v5.0.0_400 - display_name: artic-v5.0.0_400 - version: v5.0.0_400 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.0.0_400 - - name: artic-v5.1.0_400 - display_name: artic-v5.1.0_400 - version: v5.1.0_400 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.1.0_400 - - name: artic-v5.2.0_1200 - display_name: artic-v5.2.0_1200 - version: v5.2.0_1200 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.2.0_1200 - - name: artic-v5.2.0_400 - display_name: artic-v5.2.0_400 - version: v5.2.0_400 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.2.0_400 - - name: artic-v5.3.2_400 - display_name: artic-v5.3.2_400 - version: v5.3.2_400 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.3.2_400 -- family: eden - organism: sars-cov-2 - versions: - - name: eden-v1 - display_name: eden-v1 - version: v1 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/eden/v1 -- family: midnight - organism: sars-cov-2 - versions: - - name: midnight-bccdc-v1 - display_name: midnight-bccdc-v1 - version: bccdc-v1 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/bccdc-v1 - - name: midnight-bccdc-v2 - display_name: midnight-bccdc-v2 - version: bccdc-v2 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/bccdc-v2 - - name: midnight-bccdc-v3 - display_name: midnight-bccdc-v3 - version: bccdc-v3 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/bccdc-v3 - - name: midnight-bccdc-v4 - display_name: midnight-bccdc-v4 - version: bccdc-v4 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/bccdc-v4 - - name: midnight-ont-v3 - display_name: midnight-ont-v3 - version: ont-v3 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/ont-v3 - - name: midnight-v1 - display_name: midnight-v1 - version: v1 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/v1 - - name: midnight-v2 - display_name: midnight-v2 - version: v2 - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/v2 -- family: nipah - organism: niv - versions: - - name: nipah-v1 - display_name: nipah-v1 - version: v1 - repository: https://github.com/pha4ge/primer-schemes/tree/main/niv/nipah/v1 -- family: varskip +- organism: mpxv + name: erasmus + amplicon_size: 2500 + version: v1.0.0 + developers: + - Matthijs Welkers + - Marcel Jonges + - Anton van den Ouden + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v4.1 + source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v4.1.0 + citations: + - https://www.protocols.io/view/monkeypox-virus-whole-genome-sequencing-using-comb-n2bvj6155lk5 + license: CC-BY-SA-4.0 + primer_checksum: primaschema:9acd3f5ce5711ed2 + reference_checksum: primaschema:31ff1b123bbce197 +- organism: mpxv + name: yale + amplicon_size: 2000 + version: v1.0.0 + developers: + - Nicholas F.G. Chen + - Luc Gagne + - Matthew Doucette + - Sandra Smole + - Erika Buzby + - Joshua Hall + - Stephanie Ash + - Rachel Harrington + - Seana Cofsky + - Selina Clancy + - Curtis J Kapsak + - Joel Sevinsky + - Kevin Libuit + - Mallery I Breban + - Chrispin Chaguza + - Nathan D. Grubaugh + - Daniel J. Park + - Glen R. Gallagher + - Chantal B.F. Vogels + vendors: + - organisation_name: IDT + kit_name: Yale hMPXV Amplicon Panel + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/mpxv/yale/v4 + source_url: https://www.protocols.io/view/monkeypox-virus-multiplexed-pcr-amplicon-sequencin-5qpvob1nbl4o/v4 + citations: + - https://dx.doi.org/10.17504/protocols.io.5qpvob1nbl4o/v4 + primer_checksum: primaschema:5a221a7da2cd3a8e + reference_checksum: primaschema:81a4de73f5c665a2 +- organism: niv + name: nipah + amplicon_size: 400 + version: v1.0.0 + developers: + - ARTIC network + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/niv/nipah/400/v1.0.0 + source_url: https://github.com/artic-network/primer-schemes/tree/master/Nipah/V1 + license: CC-BY-SA-4.0 + primer_checksum: primaschema:6cc114b4202f2a28 + reference_checksum: primaschema:93e763381bcf23c8 +- organism: sars-cov-2 + name: artic + amplicon_size: 400 + version: v1.0.0 + aliases: + - ARTIC/V1 + developers: + - ARTIC network + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v1 + source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v1.0.0 + citations: + - https://doi.org/10.1101%2F2020.09.04.283077 + license: CC-BY-SA-4.0 + primer_checksum: primaschema:05eb8ddabe9d83d5 + reference_checksum: primaschema:b1acd7163146bf17 + status: DEPRECATED +- organism: sars-cov-2 + name: artic + amplicon_size: 400 + version: v2.0.0 + derived_from: sars-cov-2/artic/400/v1.0.0 + aliases: + - ARTIC/V2 + developers: + - ARTIC network + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v2 + source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v2.0.0 + citations: + - https://doi.org/10.1101%2F2020.09.04.283077 + license: CC-BY-SA-4.0 + primer_checksum: primaschema:70dc5635f73384fb + reference_checksum: primaschema:b1acd7163146bf17 + status: DEPRECATED +- organism: sars-cov-2 + name: artic + amplicon_size: 400 + version: v3.0.0 + derived_from: sars-cov-2/artic/400/v2.0.0 + aliases: + - ARTIC/V4.0 + developers: + - ARTIC network + vendors: + - organisation_name: IDT + kit_name: '10011442' + - organisation_name: Eurofins + home_page: https://eurofinsgenomics.com + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v3 + source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v3.0.0 + citations: + - https://doi.org/10.1101%2F2020.09.04.283077 + license: CC-BY-SA-4.0 + primer_checksum: primaschema:9da9db30cf27cd53 + reference_checksum: primaschema:b1acd7163146bf17 + status: DEPRECATED +- organism: sars-cov-2 + name: artic + amplicon_size: 400 + version: v4.0.0 + derived_from: sars-cov-2/artic/400/v3.0.0 + aliases: + - ARTIC/V4.0 + developers: + - ARTIC network + vendors: + - organisation_name: IDT + kit_name: '10011442' + - organisation_name: Eurofins + home_page: https://eurofinsgenomics.com + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v4 + source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v4.0.0 + citations: + - https://doi.org/10.1101%2F2020.09.04.283077 + license: CC-BY-SA-4.0 + primer_checksum: primaschema:d5a3ff14f651c8c1 + reference_checksum: primaschema:b1acd7163146bf17 +- organism: sars-cov-2 + name: artic + amplicon_size: 400 + version: v4.1.0 + derived_from: sars-cov-2/artic/400/v4.0.0 + aliases: + - ARTIC/V4.1 + developers: + - ARTIC network + vendors: + - organisation_name: IDT + kit_name: '10011442' + - organisation_name: Eurofins + home_page: https://eurofinsgenomics.com + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v4.1 + source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v4.1.0 + citations: + - https://doi.org/10.1101%2F2020.09.04.283077 + license: CC-BY-SA-4.0 + primer_checksum: primaschema:3ef3e7bb23008684 + reference_checksum: primaschema:b1acd7163146bf17 +- organism: sars-cov-2 + name: artic + amplicon_size: 400 + version: v5.0.0 + derived_from: sars-cov-2/artic/400/v4.1.0 + aliases: + - ARTIC/V5 + developers: + - ARTIC network + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5 + source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v5.0.0 + citations: + - https://doi.org/10.1101%2F2020.09.04.283077 + license: CC-BY-SA-4.0 + primer_checksum: primaschema:bdaeb59a7ef0ec12 + reference_checksum: primaschema:b1acd7163146bf17 +- organism: sars-cov-2 + name: artic + amplicon_size: 400 + version: v5.2.0 + derived_from: sars-cov-2/artic/400/v5.1.0 + aliases: + - ARTIC/V5 + developers: + - ARTIC network + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.2 + source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v5.2.0 + citations: + - https://doi.org/10.1101%2F2020.09.04.283077 + license: CC-BY-SA-4.0 + primer_checksum: primaschema:d57ec2cdb00e2583 + reference_checksum: primaschema:b1acd7163146bf17 +- organism: sars-cov-2 + name: artic + amplicon_size: 400 + version: v5.3.2 + derived_from: sars-cov-2/artic/400/v5.2.0 + aliases: + - ARTIC/V5.3.2 + developers: + - ARTIC network + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.3.2 + source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v5.3.2 + citations: + - https://doi.org/10.1101%2F2020.09.04.283077 + license: CC-BY-SA-4.0 + primer_checksum: primaschema:5c6856dfe0e2537d + reference_checksum: primaschema:b1acd7163146bf17 +- organism: sars-cov-2 + name: artic + amplicon_size: 400 + version: v5.4.2 + derived_from: sars-cov-2/artic/400/v5.3.2 + aliases: + - ARTIC/V5.4.2 + developers: + - ARTIC network + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.4.2 + source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v5.4.2 + citations: + - https://doi.org/10.1101%2F2020.09.04.283077 + license: CC-BY-SA-4.0 + primer_checksum: primaschema:294136d77eb67db8 + reference_checksum: primaschema:b1acd7163146bf17 +- name: eden + amplicon_size: 2500 + version: v1.0.0 organism: sars-cov-2 - versions: - - name: varskip-vsl1a - display_name: VarSkip VSL1A - version: vsl1a - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/varskip/vsl1a - - name: varskip-vss1a - display_name: VarSkip VSS1A - version: vss1a - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/varskip/vss1a - - name: varskip-vss2a - display_name: VarSkip VSS2A - version: vss2a - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/varskip/vss2a - - name: varskip-vss2b - display_name: VarSkip VSS2B - version: vss2b - repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/varskip/vss2a -- family: yale - organism: mpxv - versions: - - name: yale-v3 - display_name: yale-v3 - version: v3 - repository: https://github.com/pha4ge/primer-schemes/tree/main/mpxv/yale/v3 + aliases: + - sydney + developers: + - John-Sebastian Eden + - Eby Sim + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/eden/v1 + citations: + - https://dx.doi.org/10.17504/protocols.io.befyjbpw + notes: + - Protocol includes addendum for ONT sequencing + license: CC-BY-4.0 + primer_checksum: primaschema:55c9726eb1400cab + reference_checksum: primaschema:b1acd7163146bf17 +- organism: sars-cov-2 + name: midnight + amplicon_size: 1200 + version: bccdc-v1.0.0 + derived_from: midnight-v1 + developers: + - Nikki Freed + - Olin Silander + - John Tyson + - Tracy Lee + citations: + - https://dx.doi.org/10.17504/protocols.io.bwyppfvn + notes: + - Accomodates P.1 + license: CC-BY-4.0 + status: DEPRECATED + primer_checksum: primaschema:63730c2cad698b52 + reference_checksum: primaschema:b1acd7163146bf17 +- organism: sars-cov-2 + name: midnight + amplicon_size: 1200 + version: bccdc-v2.0.0 + derived_from: bccdc-v1.0.0 + developers: + - Nikki Freed + - Olin Silander + - John Tyson + - Tracy Lee + citations: + - https://dx.doi.org/10.17504/protocols.io.bwyppfvn + notes: + - Accomodates BA.1 + license: CC-BY-4.0 + status: DEPRECATED + primer_checksum: primaschema:24946c8acfd9e9df + reference_checksum: primaschema:b1acd7163146bf17 +- organism: sars-cov-2 + name: midnight + amplicon_size: 1200 + version: bccdc-v3.0.0 + derived_from: bccdc-v2.0.0 + developers: + - Nikki Freed + - Olin Silander + - John Tyson + - Tracy Lee + citations: + - https://dx.doi.org/10.17504/protocols.io.bwyppfvn + license: CC-BY-4.0 + status: DEPRECATED + primer_checksum: primaschema:76400a085952e90c + reference_checksum: primaschema:b1acd7163146bf17 +- organism: sars-cov-2 + name: midnight + amplicon_size: 1200 + version: bccdc-v4.0.0 + aliases: + - midnight-idt-v2 + derived_from: bccdc-v3.0.0 + developers: + - Nikki Freed + - Olin Silander + - John Tyson + - Tracy Lee + citations: + - https://dx.doi.org/10.17504/protocols.io.bwyppfvn + notes: + - Accomodates Omicron BA.2 + - IDT calls this the "-Midnight-1200 Amplicon Panel" and "Midnight Amplicon Panel + v2" + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/bccdc-v4 + license: CC-BY-4.0 + status: DEPRECATED + primer_checksum: primaschema:fbdd06cb1617a6f9 + reference_checksum: primaschema:b1acd7163146bf17 +- organism: sars-cov-2 + name: midnight + amplicon_size: 1200 + version: ont-v3.0.0 + aliases: + - Midnight-ONT/V3 + derived_from: sars-cov-2/midnight/1200/v2 + developers: + - Nikki Freed + - Olin Silander + - Oxford Nanopore Technologies + vendors: + - organisation_name: Oxford Nanopore Technologies + kit_name: MRT001.30 + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/v3 + citations: + - https://dx.doi.org/10.17504/protocols.io.bwyppfvn + notes: + - Accomodates Omicron BA.2 + license: CC-BY-4.0 + primer_checksum: primaschema:1969577706571a6e + reference_checksum: primaschema:b1acd7163146bf17 +- organism: sars-cov-2 + name: midnight + amplicon_size: 1200 + version: v1.0.0 + aliases: + - midnight-ont-v1 + - Midnight-ONT/V1 + - V1200 + developers: + - Nikki Freed + - Olin Silander + vendors: + - organisation_name: Oxford Nanopore Technologies + kit_name: MRT001.10 + - organisation_name: Integrated DNA Technologies + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/v1 + citations: + - https://dx.doi.org/10.17504/protocols.io.bwyppfvn + license: CC-BY-4.0 + status: DEPRECATED + primer_checksum: primaschema:5f4389079f1acc9c + reference_checksum: primaschema:b1acd7163146bf17 +- organism: sars-cov-2 + name: midnight + amplicon_size: 1200 + version: v2.0.0 + aliases: + - midnight-ont-v2 + - midnight-idt-v1 + - Midnight-ONT/V2 + derived_from: midnight-v1 + developers: + - Nikki Freed + - Olin Silander + vendors: + - organisation_name: Oxford Nanopore Technologies + kit_name: MRT001.20 + definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/v2 + citations: + - https://dx.doi.org/10.17504/protocols.io.bwyppfvn + notes: + - Accomodates Omicron BA.1 with single primer addition + - https://twitter.com/freed_nikki/status/1464477522448433156 + - Not considered a new version by Freed et al. and IDT despite additional primer + license: CC-BY-4.0 + status: DEPRECATED + primer_checksum: primaschema:eafcbe457b8a2345 + reference_checksum: primaschema:b1acd7163146bf17 diff --git a/mpxv/yale/v3/info.yml b/mpxv/yale/v3/info.yml deleted file mode 100644 index b36e012..0000000 --- a/mpxv/yale/v3/info.yml +++ /dev/null @@ -1,15 +0,0 @@ -schema_version: 0.9.0 -name: yale-v3 -organism: mpxv -developers: -- person_name: Chantal B.F. Vogels - orcid: 0000-0003-0027-6480 -vendors: -- organisation_name: IDT - kit_name: Yale hMPXV Amplicon Panel -amplicon_size: 2000 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/mpxv/yale/v3 -citations: -- https://www.protocols.io/view/monkeypox-virus-multiplexed-pcr-amplicon-sequencin-5qpvob1nbl4o/v3 -primer_checksum: primaschema:973600b2f6aa2fee -reference_checksum: primaschema:3b3fa241d3d79680 diff --git a/mpxv/yale/v3/primer.bed b/mpxv/yale/v3/primer.bed deleted file mode 100644 index df2898a..0000000 --- a/mpxv/yale/v3/primer.bed +++ /dev/null @@ -1,326 +0,0 @@ -MT903345 356 378 MPXV_1_LEFT 1 + AGCAGTGTCCCCTACATGGATT -MT903345 2395 2417 MPXV_1_RIGHT 1 - AGGAGCATCAGGGTGTAGAACA -MT903345 1439 1461 MPXV_2_LEFT 2 + GTCGGTGTTTGGTCTTGCTTTG -MT903345 3353 3375 MPXV_2_RIGHT 2 - TCTCCCTACGACGATCACTACG -MT903345 2606 2628 MPXV_3_LEFT 1 + AATCTGGAAGCGTAAGTTCCCG -MT903345 4593 4615 MPXV_3_RIGHT 1 - CGAGATTGTGCGCATCGTTAAC -MT903345 3990 4012 MPXV_4_LEFT 2 + CGCGTAGATGAATCGCTTCTCA -MT903345 5584 5607 MPXV_4_RIGHT 2 - GGGGATTCCTTGTAGATGAACCC -MT903345 4991 5013 MPXV_5_LEFT 1 + ACCTGCTCGGTTACTTCTGTGT -MT903345 7027 7049 MPXV_5_RIGHT 1 - TGAGAGCGAGAGTGACAGTGAT -MT903345 6134 6156 MPXV_6_LEFT 2 + TCGTGAAACTGCTCATCGACAG -MT903345 8202 8224 MPXV_6_RIGHT 2 - TGATACGGAACCACCCACTGTA -MT903345 7417 7439 MPXV_7_LEFT 1 + CGACTCCCTTGTGTGTAACGTT -MT903345 9405 9427 MPXV_7_RIGHT 1 - GGCAGAGACAATTACCGATCGG -MT903345 8858 8880 MPXV_8_LEFT 2 + ACACGTACGCGCTTATTCATCA -MT903345 10646 10668 MPXV_8_RIGHT 2 - GGGTGGTGGCATCAAAGAAGAT -MT903345 9767 9789 MPXV_9_LEFT 1 + TTGGCTAATCGATTTCGGGCTT -MT903345 11731 11753 MPXV_9_RIGHT 1 - TCTCGATGATGGAGAGATCCCG -MT903345 10729 10751 MPXV_10_LEFT 2 + AGCTAAACCCAGGCATACGTTC -MT903345 12880 12902 MPXV_10_RIGHT 2 - TGAGGAGGTGGTTCTCGATGAA -MT903345 12290 12312 MPXV_11_LEFT 1 + TTAACAACTTCCGGACGCACAT -MT903345 14020 14042 MPXV_11_RIGHT 1 - TATCGAGTCGCATAGTGTTGCC -MT903345 13079 13101 MPXV_12_LEFT 2 + TACACCTCCGTTAACACCTCCA -MT903345 15347 15369 MPXV_12_RIGHT 2 - TCATGCTTCCCAAACGTGCTAA -MT903345 14663 14685 MPXV_13_LEFT 1 + CACATCTCGTTTTCGTGCGAAA -MT903345 16733 16755 MPXV_13_RIGHT 1 - ATCAAGTTCGCTGCCGGAATAA -MT903345 15866 15888 MPXV_14_LEFT 2 + TTGCGGACATGTTACACTCCTT -MT903345 18116 18138 MPXV_14_RIGHT 2 - TCACTCTGTGCAACGATGATGG -MT903345 17282 17304 MPXV_15_LEFT 1 + GCGTTGTCTGTATTCTGGAGCT -MT903345 19262 19284 MPXV_15_RIGHT 1 - TGGGGAAATTATTACGGCGTCT -MT903345 18294 18316 MPXV_16_LEFT 2 + TCAAGTGGTGGGGATCCATAGT -MT903345 20256 20278 MPXV_16_RIGHT 2 - TATCCGACGGTCCATTGCTAGA -MT903345 19740 19762 MPXV_17_LEFT 1 + ATGGCAAATCTAACTGCGGGTT -MT903345 21690 21712 MPXV_17_RIGHT 1 - ATTGAGCCCAGCGCATCTTATT -MT903345 21069 21091 MPXV_18_LEFT 2 + ATTGCAGAGGACGTCATGATCG -MT903345 22848 22870 MPXV_18_RIGHT 2 - TCTGTTGTTTACCACTCAGCGG -MT903345 22029 22051 MPXV_19_LEFT 1 + CAACAACGGACCACATCCTTCT -MT903345 23931 23953 MPXV_19_RIGHT 1 - TTCCATTACATCAGGCAGCCAC -MT903345 23058 23080 MPXV_20_LEFT 2 + AGTGAGTTCGGCGACAAAGTAC -MT903345 24880 24902 MPXV_20_RIGHT 2 - AAACGGTTCCCATGATGAACGT -MT903345 23975 23997 MPXV_21_LEFT 1 + CAATGCTCCAGCGTTCAACAAC -MT903345 26160 26182 MPXV_21_RIGHT 1 - ATGCTGATCCTCCCATTCCGTA -MT903345 25311 25333 MPXV_22_LEFT 2 + ACCTGATGCAGACAATAGCGAC -MT903345 27552 27574 MPXV_22_RIGHT 2 - CAGACGCTGTTCCAAGACTGAA -MT903345 26810 26832 MPXV_23_LEFT 1 + GTATCGTACTTCAACTCCGGCC -MT903345 28859 28881 MPXV_23_RIGHT 1 - AGGGTTTGGGTGTAAGATTGGC -MT903345 27858 27880 MPXV_24_LEFT 2 + CCAGAATGTTCACCAGCTCCAT -MT903345 30041 30063 MPXV_24_RIGHT 2 - ATGATCAGTGGCAGTTTGGACC -MT903345 29492 29514 MPXV_25_LEFT 1 + CACCGCCTCCTATATCAATGCC -MT903345 31057 31079 MPXV_25_RIGHT 1 - CTTTCGCACACATTTACGCCAA -MT903345 30136 30158 MPXV_26_LEFT 2 + GGATGCCACTGCTGGATTACAT -MT903345 32426 32448 MPXV_26_RIGHT 2 - TGATAATGCATCTTCCGTGCCC -MT903345 31730 31752 MPXV_27_LEFT 1 + ATAACCGGCGCTGTCATGTATC -MT903345 33548 33570 MPXV_27_RIGHT 1 - GGATGAATCCGAAGCACGTGTA -MT903345 33000 33022 MPXV_28_LEFT 2 + TCCTCTGTGGCTAGCGCTATAA -MT903345 34964 34986 MPXV_28_RIGHT 2 - GACTTTTCCCAAGTGGCTGGAA -MT903345 34181 34203 MPXV_29_LEFT 1 + CCACGGATCGTAATACGGCAAT -MT903345 36344 36366 MPXV_29_RIGHT 1 - ACAGGCAACAATTGGAATTGGC -MT903345 35632 35654 MPXV_30_LEFT 2 + GTAAACTCCGCCGTAGTTTCCA -MT903345 37370 37392 MPXV_30_RIGHT 2 - TGACTTGAACGCAGTCACAACA -MT903345 36423 36445 MPXV_31_LEFT 1 + GAGCAGCGATTTTGGCGTTATC -MT903345 38633 38655 MPXV_31_RIGHT 1 - TGAATGGCTGTCGTCAAAAGGT -MT903345 37903 37925 MPXV_32_LEFT 2 + ACGCTCCTGATTGTGTTTCGAA -MT903345 39666 39688 MPXV_32_RIGHT 2 - GGTTGAATTTATGCTCTGCGGC -MT903345 38939 38961 MPXV_33_LEFT 1 + ACCACGACCTTCTTCATTTCGT -MT903345 40939 40961 MPXV_33_RIGHT 1 - TCGCCGTTTCATTTTCAACAGC -MT903345 40025 40047 MPXV_34_LEFT 2 + AAGCGCTCCCCTAGTAGTACTC -MT903345 42129 42151 MPXV_34_RIGHT 2 - CGAAGGTCTTCTCTCACACGTG -MT903345 41186 41208 MPXV_35_LEFT 1 + CCCCGCAATACTCCTCATTACG -MT903345 43252 43274 MPXV_35_RIGHT 1 - ACGTCGCTGTAATAGACAAGGC -MT903345 42576 42598 MPXV_36_LEFT 2 + CGATGTGTCGGCGTTAAGATCT -MT903345 44393 44415 MPXV_36_RIGHT 2 - CGCTGCGTTTAAAAGCCTCATT -MT903345 43813 43835 MPXV_37_LEFT 1 + AACTACTGTCTCCAGAGCTCGC -MT903345 45826 45848 MPXV_37_RIGHT 1 - TATCTGCACGAGGACAAGGCTA -MT903345 45265 45287 MPXV_38_LEFT 2 + CCCTAGGACGAACTACTGCCAT -MT903345 47160 47182 MPXV_38_RIGHT 2 - ATAAACCGTCCATTGCCACACA -MT903345 46384 46406 MPXV_39_LEFT 1 + CTGTAGGCCGTGTATCAGCATC -MT903345 48581 48603 MPXV_39_RIGHT 1 - GTCCATGTATTCGGCAACCTCT -MT903345 47887 47909 MPXV_40_LEFT 2 + TCGCTGCTTTACATGTTTCCCA -MT903345 49557 49579 MPXV_40_RIGHT 2 - AGTTCAGCCGTCTACTCTTGGA -MT903345 49014 49036 MPXV_41_LEFT 1 + TCTGAGATAAAACAGGGACGCG -MT903345 50960 50982 MPXV_41_RIGHT 1 - TCGTTTGTTGGAAGGGCAGAAA -MT903345 50015 50037 MPXV_42_LEFT 2 + CGTTGCAACAATTCAGACTCCC -MT903345 52313 52335 MPXV_42_RIGHT 2 - ACGGTATGTTACGGTTTGCCAA -MT903345 51409 51431 MPXV_43_LEFT 1 + AAGAGCGACGTACAACTGTTGT -MT903345 53382 53404 MPXV_43_RIGHT 1 - GCGTTCAGTTGCATGGGTAAAG -MT903345 52745 52767 MPXV_44_LEFT 2 + ACGACACCGACTAATGTTTCCG -MT903345 54376 54398 MPXV_44_RIGHT 2 - ATCCAGATGTCGAAATGGCGAG -MT903345 53797 53819 MPXV_45_LEFT 1 + ACATCCTCTATCGACGGCTTCT -MT903345 55509 55531 MPXV_45_RIGHT 1 - CGGACACTACATCGAGAAGACG -MT903345 54852 54874 MPXV_46_LEFT 2 + CACGGCATGGTTTCTGTGACTA -MT903345 56830 56852 MPXV_46_RIGHT 2 - CGGGACCAAATGTAGTCAAGCT -MT903345 55974 55996 MPXV_47_LEFT 1 + CAGCATGGTACGTCTGACAACA -MT903345 57890 57912 MPXV_47_RIGHT 1 - AAGGATCCTAGGATCGCTAGCA -MT903345 57233 57255 MPXV_48_LEFT 2 + CCCAATGCGTCCATGTTGTCTA -MT903345 59232 59254 MPXV_48_RIGHT 2 - TTTGCATAGTCTTTCGGCGGAA -MT903345 58683 58705 MPXV_49_LEFT 1 + CCAATACCAACCCCAACAACCT -MT903345 60300 60322 MPXV_49_RIGHT 1 - ACCGTCGGATCTTTGGAATTGG -MT903345 59317 59339 MPXV_50_LEFT 2 + ATAGGACTAGCCGCGGTAACTT -MT903345 61288 61310 MPXV_50_RIGHT 2 - TGGCAGGGGGAATAGGTCTATC -MT903345 60711 60733 MPXV_51_LEFT 1 + CACGGCTACCTCATTAGCATCC -MT903345 62585 62607 MPXV_51_RIGHT 1 - GCGATATCTAGAAGCGGTGTGG -MT903345 61791 61813 MPXV_52_LEFT 2 + TATGGCTATTCTGGCGGCTAGA -MT903345 63941 63963 MPXV_52_RIGHT 2 - CCGGAGGCAATATTCCAACTGA -MT903345 63140 63162 MPXV_53_LEFT 1 + TCACCACGTGTGTTTCAGGATC -MT903345 64969 64991 MPXV_53_RIGHT 1 - TGTGCGGGTTTTCCTAGTGATG -MT903345 64237 64259 MPXV_54_LEFT 2 + GGCTCCTCTCTCAGGCTCTATT -MT903345 66153 66175 MPXV_54_RIGHT 2 - CAAAAGGAGCGGGGACAAAAAC -MT903345 65306 65328 MPXV_55_LEFT 1 + AGTGGGTAAGACGTCACAGGTA -MT903345 67356 67378 MPXV_55_RIGHT 1 - CGCGTCTCTCATGGACATGATA -MT903345 66510 66532 MPXV_56_LEFT 2 + AGTCCTATTCTCGCTGAGGAGT -MT903345 68422 68444 MPXV_56_RIGHT 2 - TGGGAATTGCTCACTTGTTGGA -MT903345 67453 67475 MPXV_57_LEFT 1 + AGTCCATCATTGGTTGCGTCAA -MT903345 69517 69539 MPXV_57_RIGHT 1 - ATGGAGTTTGGCCACCTGTTAC -MT903345 68682 68704 MPXV_58_LEFT 2 + GCACTAGAAACGGTCGATGCAT -MT903345 70481 70503 MPXV_58_RIGHT 2 - CAGCAGACGCGAATAGCATAGT -MT903345 69722 69744 MPXV_59_LEFT 1 + GCTTCACGTCACCCAACATACT -MT903345 71941 71963 MPXV_59_RIGHT 1 - TGAGAGTGATGGCAAACAACGT -MT903345 71216 71238 MPXV_60_LEFT 2 + TGTGTTCTACATGCGGCAAAGA -MT903345 73103 73125 MPXV_60_RIGHT 2 - GCCCAAGGCGGCAAAAATATAC -MT903345 72358 72380 MPXV_61_LEFT 1 + AGCCTTTCCACTTCTGCAGAAT -MT903345 74275 74297 MPXV_61_RIGHT 1 - ACGATTGTCGACCCTCTACAGT -MT903345 73551 73573 MPXV_62_LEFT 2 + ACTGATGCGTTTTCCAGGGAAT -MT903345 75439 75461 MPXV_62_RIGHT 2 - TGGTGGATGTGAACAGCATACG -MT903345 74533 74555 MPXV_63_LEFT 1 + GATCCAGAGTGTTCGAATGCCA -MT903345 76557 76579 MPXV_63_RIGHT 1 - AGAAAGGCGGTTGGATTTCCTC -MT903345 75823 75845 MPXV_64_LEFT 2 + GGTGGCGCTAGTCATCACATTA -MT903345 77575 77597 MPXV_64_RIGHT 2 - TGGGTTCTTGAAGAGGGCTAGA -MT903345 76756 76778 MPXV_65_LEFT 1 + TGGCTGATTAGGCTGTGGTCTA -MT903345 78814 78836 MPXV_65_RIGHT 1 - TCGAGCGCGGCTACTATAACTA -MT903345 77896 77919 MPXV_66_LEFT 2 + GCTAATCTAGCGTGTGAAGACGA -MT903345 80075 80097 MPXV_66_RIGHT 2 - CGCGTACGGATCTCTTGCTATT -MT903345 79176 79198 MPXV_67_LEFT 1 + CAGAAAGTGCAAATGAGGTCGC -MT903345 81264 81286 MPXV_67_RIGHT 1 - CCCCATCCATAGCACCTAGTCT -MT903345 80668 80691 MPXV_68_LEFT 2 + ACGCTAGTAATCCAATCGGAAGC -MT903345 82491 82513 MPXV_68_RIGHT 2 - CATAAACGGGGGCTCCATGAAT -MT903345 81726 81748 MPXV_69_LEFT 1 + TACTTTCCCATCCCTCCGTTGA -MT903345 83678 83700 MPXV_69_RIGHT 1 - CTCAGTGGTGGGTTTGACGAAT -MT903345 83016 83038 MPXV_70_LEFT 2 + GCTTTAGAGGCGGACTACTTGG -MT903345 84751 84773 MPXV_70_RIGHT 2 - AGAGTACTAGCTGCACCGAACT -MT903345 83959 83981 MPXV_71_LEFT 1 + TTACACAACAAGCCCTGTCCAG -MT903345 85799 85821 MPXV_71_RIGHT 1 - ATCATCCTTACCAGCGGCTAGA -MT903345 85165 85187 MPXV_72_LEFT 2 + CCCCGCTTCTATTTACTCCTGC -MT903345 87066 87088 MPXV_72_RIGHT 2 - TAACTAAATGGCGGCGGTGAAA -MT903345 86488 86510 MPXV_73_LEFT 1 + ATGTTCAGCGCCGTAGTAACTC -MT903345 88323 88345 MPXV_73_RIGHT 1 - AGATGCCGCTGACGTGATTAAA -MT903345 87600 87622 MPXV_74_LEFT 2 + GCATGCATGTATTGGAGCCATT -MT903345 89649 89671 MPXV_74_RIGHT 2 - CGTAATTGACCACGCCATTACG -MT903345 88702 88726 MPXV_75_LEFT 1 + AGACTGTTGTTATGGTCTTCGGAA -MT903345 91056 91078 MPXV_75_RIGHT 1 - ACCTACCACTTCAGCAGTTTGT -MT903345 90360 90382 MPXV_76_LEFT 2 + TCCAGCGTATGAGGTTTTGCAA -MT903345 92246 92268 MPXV_76_RIGHT 2 - AGATTGAGCGCCAGATCCTAGA -MT903345 91464 91486 MPXV_77_LEFT 1 + TGACCCTCACTCCGATATCTGG -MT903345 93361 93383 MPXV_77_RIGHT 1 - TTGGCAGCGTATTGATGTCCAA -MT903345 92707 92729 MPXV_78_LEFT 2 + AGCCCGTAAATGCAATCAGTGA -MT903345 94547 94570 MPXV_78_RIGHT 2 - TGGTACACCTACAGTAGCTCACA -MT903345 93852 93874 MPXV_79_LEFT 1 + CTAACTGCTTCTGGAGGCAAGG -MT903345 95607 95629 MPXV_79_RIGHT 1 - TTGGTGATTCGAACGGTACACC -MT903345 94872 94894 MPXV_80_LEFT 2 + GTCTAGTTTTCAGCACGGTGGT -MT903345 96654 96676 MPXV_80_RIGHT 2 - ATCGTGAGGTGGTTGCATTACA -MT903345 95897 95919 MPXV_81_LEFT 1 + CCCGGTAACTACCATAGTGGGA -MT903345 97806 97828 MPXV_81_RIGHT 1 - CGGTCTTCCAATGACACAAGGT -MT903345 97210 97232 MPXV_82_LEFT 2 + AGCGAATTACTCTGTCCGAGGA -MT903345 99077 99099 MPXV_82_RIGHT 2 - ACATTCACTCCGCGTTCGTTAA -MT903345 98139 98161 MPXV_83_LEFT 1 + GGAAGAGATTCCGGACTTTGCA -MT903345 100447 100469 MPXV_83_RIGHT 1 - AACGTCAACTCATGTGGTTCCA -MT903345 99465 99487 MPXV_84_LEFT 2 + TCGGATACAGACACTCAAGGGA -MT903345 101705 101727 MPXV_84_RIGHT 2 - CAATTTCTGACGCGCGATTGAA -MT903345 101077 101099 MPXV_85_LEFT 1 + TACTTGCGTGTCGTCGTTCAAT -MT903345 102833 102855 MPXV_85_RIGHT 1 - CTGGAACGTTCTCACCCCTTTT -MT903345 101916 101938 MPXV_86_LEFT 2 + GCTGCGTGTATAACAAGTGACG -MT903345 103806 103828 MPXV_86_RIGHT 2 - CGGTGGCTGAGTTTAACCAAGA -MT903345 103235 103257 MPXV_87_LEFT 1 + AACGGGATTGTCTGGCATATCA -MT903345 105068 105090 MPXV_87_RIGHT 1 - GAGTAAATCACACGCGGCCTAT -MT903345 104047 104069 MPXV_88_LEFT 2 + CCCCTCCCAATAGTTCTCCCTT -MT903345 106298 106320 MPXV_88_RIGHT 2 - TATTCAGAGAACGGGCCCATCT -MT903345 105407 105429 MPXV_89_LEFT 1 + TGGCGCTATCTTTCAACCAACT -MT903345 107404 107426 MPXV_89_RIGHT 1 - TCGGTTACGTGCCATATGTTGG -MT903345 106746 106768 MPXV_90_LEFT 2 + GGCAGATTCCGGATAACCAGTC -MT903345 108585 108607 MPXV_90_RIGHT 2 - TCCACGGATGATGTAGATGCAA -MT903345 107927 107949 MPXV_91_LEFT 1 + CCCAACTTCACCACCCTTGAAT -MT903345 109870 109892 MPXV_91_RIGHT 1 - ATGAAACTTCAGGCTGCACCAT -MT903345 109250 109272 MPXV_92_LEFT 2 + TGAGGCAGCAAATACTGAACCA -MT903345 111172 111194 MPXV_92_RIGHT 2 - TTCAGGCCGAAACAAACGATCT -MT903345 110548 110570 MPXV_93_LEFT 1 + TGGCGTTGTTCAACGTACTCTT -MT903345 112346 112368 MPXV_93_RIGHT 1 - ACCGACAACAATTCTCCGTTCT -MT903345 111725 111747 MPXV_94_LEFT 2 + GTCTGCTGGCGGTCATCATATT -MT903345 113489 113511 MPXV_94_RIGHT 2 - AATCTTGAACGCGAGACTGGTC -MT903345 112793 112815 MPXV_95_LEFT 1 + ATTGTTGTGCGTTGATGTCGTT -MT903345 114896 114918 MPXV_95_RIGHT 1 - ACAAATGGAACGCATCAAGGGA -MT903345 114028 114050 MPXV_96_LEFT 2 + TATCGGTCGCGTTCATTGGAAA -MT903345 116193 116216 MPXV_96_RIGHT 2 - AGTTTCCAGACTGGTATCCGAGT -MT903345 115648 115670 MPXV_97_LEFT 1 + ATAGGGCTCGTTCTACCTCCTG -MT903345 117548 117570 MPXV_97_RIGHT 1 - TTTCTGCGCAATGCCATACAAC -MT903345 116880 116902 MPXV_98_LEFT 2 + TGAAATAGCGCCAGTCCTCCTA -MT903345 118585 118607 MPXV_98_RIGHT 2 - CCAAACGTGCAATTTGTGGACA -MT903345 117756 117778 MPXV_99_LEFT 1 + CCTTCGGGAGATCCTGCATAGA -MT903345 119762 119784 MPXV_99_RIGHT 1 - ACTACGGCGGCATTATGTTCTC -MT903345 118947 118969 MPXV_100_LEFT 2 + CGGGGTTGATCTTGTGCTGTTA -MT903345 120739 120761 MPXV_100_RIGHT 2 - GTTCGTGGAATGGTCGGAGAAA -MT903345 120255 120277 MPXV_101_LEFT 1 + AGTCGAGGACTTGGATGTCTGT -MT903345 121948 121970 MPXV_101_RIGHT 1 - TCCCACCACCTTTTCGTCTAGT -MT903345 121324 121346 MPXV_102_LEFT 2 + CAGCGTGTATAGGATGGTGACG -MT903345 122954 122976 MPXV_102_RIGHT 2 - ATATAGCATCCGGGCAACGATG -MT903345 122348 122370 MPXV_103_LEFT 1 + TCTCCTGGATGTACGTCACCAA -MT903345 124294 124316 MPXV_103_RIGHT 1 - TCCACATGCCAAGTGAAGAGTG -MT903345 123607 123629 MPXV_104_LEFT 2 + ACAGTGTTGCCATTACCTCCAC -MT903345 125605 125627 MPXV_104_RIGHT 2 - GTCGCAAAAAGAAGCCCAAGAC -MT903345 124669 124691 MPXV_105_LEFT 1 + AACTGCTACACCTAGACCAGCT -MT903345 126984 127006 MPXV_105_RIGHT 1 - CTCATCGACAGTTGCACACTCA -MT903345 126327 126349 MPXV_106_LEFT 2 + GGATGAGATTCGAAGTGCGTGT -MT903345 128363 128385 MPXV_106_RIGHT 2 - AGAGCTTTTTCCACGCGTTACT -MT903345 127456 127478 MPXV_107_LEFT 1 + AGAACGTCAGCCTAGAAGGTCA -MT903345 129806 129828 MPXV_107_RIGHT 1 - GTTCAGCTTCCACCAGGTCATT -MT903345 128995 129017 MPXV_108_LEFT 2 + TTTGGTGCCTGATCCTAAAGCC -MT903345 131239 131261 MPXV_108_RIGHT 2 - AATATCGAGACCGCCTCTCTGA -MT903345 130359 130381 MPXV_109_LEFT 1 + CATCAGACGTTCCGGAAAGAGG -MT903345 132681 132703 MPXV_109_RIGHT 1 - AGAAGTAGCACCTCCATCCACA -MT903345 132061 132083 MPXV_110_LEFT 2 + ACAAGCGAATGAGGGACGAAAA -MT903345 133984 134006 MPXV_110_RIGHT 2 - AGTTGAACGACTGCGAACGTAA -MT903345 133125 133147 MPXV_111_LEFT 1 + TTCGAATTCACGGGGTACAACC -MT903345 135056 135078 MPXV_111_RIGHT 1 - AACCACATGCTACTGGAGGAGA -MT903345 134041 134063 MPXV_112_LEFT 2 + TGTAGCATTTCCACGGCATTCA -MT903345 136220 136242 MPXV_112_RIGHT 2 - TCCCATGGCCATTACCTACTGT -MT903345 135188 135210 MPXV_113_LEFT 1 + AGAGACGCGACTTCAGGAGTTA -MT903345 137446 137468 MPXV_113_RIGHT 1 - AGCTCCAATGCAATGGCTAACA -MT903345 136636 136658 MPXV_114_LEFT 2 + TGCATTTTCAGCACTCGACTGA -MT903345 138456 138478 MPXV_114_RIGHT 2 - GGCTGCGGTGTGTTTACTTTTT -MT903345 137753 137775 MPXV_115_LEFT 1 + GATGCCGTCCAGTCTGTACATC -MT903345 139755 139777 MPXV_115_RIGHT 1 - TGCCGACTTTTTGGAACGTTTG -MT903345 139065 139088 MPXV_116_LEFT 2 + AGTTTCCTTTAACTCGGTCGGTT -MT903345 141135 141157 MPXV_116_RIGHT 2 - TCTGCTCTTCGTCGTTTTCTGG -MT903345 140505 140527 MPXV_117_LEFT 1 + TTCCGCGTCTGAGATGGAAATG -MT903345 142493 142515 MPXV_117_RIGHT 1 - AGTCGCATGCTATGATGATGGT -MT903345 141726 141748 MPXV_118_LEFT 2 + GCCGGCCGCTATAATGATGTTA -MT903345 143899 143921 MPXV_118_RIGHT 2 - TATGGTTGTAGGGCCCTTGCTA -MT903345 143125 143147 MPXV_119_LEFT 1 + ATCCAATATCATGGCGCCTAGC -MT903345 145129 145151 MPXV_119_RIGHT 1 - AGGTACGTATACATGCGGGGAT -MT903345 144221 144243 MPXV_120_LEFT 2 + CTCGAGCATCCATTCGACTCAG -MT903345 146504 146526 MPXV_120_RIGHT 2 - GCGATACCGTATACGCGAAGTT -MT903345 145683 145705 MPXV_121_LEFT 1 + GCGGAACCAATAACGGAAATCC -MT903345 147491 147515 MPXV_121_RIGHT 1 - AGCTGTATGTCAATACCGGCATTA -MT903345 146655 146677 MPXV_122_LEFT 2 + GGGGTTCGTCTAGTGTTGCTTC -MT903345 148776 148798 MPXV_122_RIGHT 2 - TCGATGATGACGCTGTGCATAG -MT903345 148194 148216 MPXV_123_LEFT 1 + TTGCTGTCGAAGAGGCAAAAGA -MT903345 150016 150038 MPXV_123_RIGHT 1 - CCTCTGGAAGCACCCCTCTTAT -MT903345 149180 149202 MPXV_124_LEFT 2 + ATCCACTAGAGCAGCCGTATGA -MT903345 151244 151266 MPXV_124_RIGHT 2 - ATCCCTGACAAGTTCCTGGAGT -MT903345 150457 150479 MPXV_125_LEFT 1 + CGCGGACACACTGATAGCATAG -MT903345 152584 152606 MPXV_125_RIGHT 1 - TCTGGAACCGAGTACTTCCACA -MT903345 151815 151837 MPXV_126_LEFT 2 + GCGTTCTCTGGAGTAGCGTATG -MT903345 153595 153617 MPXV_126_RIGHT 2 - AACTTCCAAACGGTAGCGGTAC -MT903345 152655 152677 MPXV_127_LEFT 1 + TGTCTAATGATCCGCGAACGAT -MT903345 154813 154835 MPXV_127_RIGHT 1 - ACACGCACACGCTTTATCAGAT -MT903345 153992 154014 MPXV_128_LEFT 2 + GAGGAAAGGGTGGTATCATGGC -MT903345 155899 155921 MPXV_128_RIGHT 2 - CGCACGCACACAATCCTATCAT -MT903345 155006 155028 MPXV_129_LEFT 1 + GACGAGCTTCCGAGTTCCAATT -MT903345 157303 157325 MPXV_129_RIGHT 1 - GGAGGCTCCAGATAGGATGAGT -MT903345 156543 156565 MPXV_130_LEFT 2 + CCTGGAGAATTTGCCAAGGTCA -MT903345 158259 158281 MPXV_130_RIGHT 2 - ATCAACGATGACTCCTGATCGC -MT903345 157783 157805 MPXV_131_LEFT 1 + CCAACCATGTACCGTCGAGTTA -MT903345 159433 159455 MPXV_131_RIGHT 1 - TTGGTTCCGGAGTCGTGATTTC -MT903345 158398 158421 MPXV_132_LEFT 2 + GGAGTCGTTAAAGGTGACACACA -MT903345 160872 160895 MPXV_132_RIGHT 2 - GCATGTGATAAGACCTACGTGCT -MT903345 160098 160120 MPXV_133_LEFT 1 + CCGCCGGAAACTTTCTAGAACA -MT903345 162057 162079 MPXV_133_RIGHT 1 - AGGTCCTGGTTTGAGTGCATTC -MT903345 161313 161335 MPXV_134_LEFT 2 + GATGGTTGGGAGGTATCTTGCC -MT903345 163043 163065 MPXV_134_RIGHT 2 - TACCATGATTCTGGCCAATCCG -MT903345 162555 162577 MPXV_135_LEFT 1 + GAGTCCCAGACCAGAATTGCAG -MT903345 164489 164511 MPXV_135_RIGHT 1 - GCGACTGCTTCCGAAATACATG -MT903345 163858 163880 MPXV_136_LEFT 2 + GCCGAAGACAGTTACGGTTGTA -MT903345 165513 165535 MPXV_136_RIGHT 2 - CATTCCGCATTAGGACACGTGA -MT903345 164937 164960 MPXV_137_LEFT 1 + GCTGGATGCTGGAGATAAATGGT -MT903345 166946 166968 MPXV_137_RIGHT 1 - TCCGACGTCACATGACTCTGTA -MT903345 165993 166015 MPXV_138_LEFT 2 + TGGCGTTGACAATTATGGGTGT -MT903345 168215 168237 MPXV_138_RIGHT 2 - CCAAGGGCGTTAACCAGTGTAT -MT903345 167503 167525 MPXV_139_LEFT 1 + GCATCAAGACGTGGCAAACAAT -MT903345 169254 169276 MPXV_139_RIGHT 1 - AGCAATGATTCCACACCCAACT -MT903345 168314 168336 MPXV_140_LEFT 2 + CGATGCGAGAAGACTGAAGAGG -MT903345 170374 170396 MPXV_140_RIGHT 2 - CCTTTGGGGCGAATACTCTTCC -MT903345 169602 169628 MPXV_141_LEFT 1 + AGGACATTGGATATGTGGAAAAGTGA -MT903345 171509 171531 MPXV_141_RIGHT 1 - TGGCTCGCCGTAAATAGACATC -MT903345 170931 170953 MPXV_142_LEFT 2 + AGAGTGTGGGGGTAGTGTTACG -MT903345 172513 172535 MPXV_142_RIGHT 2 - GATGGTCTTCACCTCCCCAGTA -MT903345 171898 171920 MPXV_143_LEFT 1 + CAGCTGCAGCAACTTCTGTACT -MT903345 173581 173603 MPXV_143_RIGHT 1 - TCTCCGTCCTCGTCTTCTTCTT -MT903345 173009 173031 MPXV_144_LEFT 2 + ACCACGAACGAAACCTACTGTG -MT903345 174796 174818 MPXV_144_RIGHT 2 - CTTTGCACTGAATGGCTCTCCT -MT903345 174125 174147 MPXV_145_LEFT 1 + GGAAAGGGTGGAATGCGATACA -MT903345 176213 176235 MPXV_145_RIGHT 1 - TCCCACCATCTTACGTGAGACT -MT903345 175337 175359 MPXV_146_LEFT 2 + CCGTCACAAGACCACAGGTTTA -MT903345 177271 177293 MPXV_146_RIGHT 2 - TAGCGCAATGAAGTGGTGTACG -MT903345 176298 176321 MPXV_147_LEFT 1 + CGAAGACAGACATACCGTAGACG -MT903345 178300 178322 MPXV_147_RIGHT 1 - ACGTAGATCCGGCAACCAAAAT -MT903345 177434 177456 MPXV_148_LEFT 2 + GTCGTCTACCGCCTAAAAGTGT -MT903345 179327 179349 MPXV_148_RIGHT 2 - GAACCAGCTGCTCCATGATTCA -MT903345 178763 178785 MPXV_149_LEFT 1 + CCAGGCTCTCGCATAAAGATGA -MT903345 180553 180575 MPXV_149_RIGHT 1 - GGGCGGAATAACGGGAATGTAA -MT903345 179672 179694 MPXV_150_LEFT 2 + GCGCCGTCCATTTTAAAGCAAT -MT903345 181536 181558 MPXV_150_RIGHT 2 - CACCCTCAGCTATATCCGTCCA -MT903345 181043 181065 MPXV_151_LEFT 1 + CGTAATGGGGTCGATGGTTGAT -MT903345 182725 182747 MPXV_151_RIGHT 1 - AGACTGGCACGCGATTTAACAT -MT903345 182098 182121 MPXV_152_LEFT 2 + CCGACACCTTCATATCTTCCACC -MT903345 183821 183843 MPXV_152_RIGHT 2 - GGCCTGCTGACCAGTTAGTAAC -MT903345 182924 182946 MPXV_153_LEFT 1 + GCTCAATCTGCCAGGATCAAGT -MT903345 184806 184828 MPXV_153_RIGHT 1 - CATGACCCACCACACCATTAGG -MT903345 184067 184089 MPXV_154_LEFT 2 + GGAGAGGCCAGTAGATCCTGTT -MT903345 186170 186192 MPXV_154_RIGHT 2 - CGGCAATGATCCGTCGCTATAT -MT903345 185280 185302 MPXV_155_LEFT 1 + TGCGATAACAGACGACGATCAG -MT903345 187518 187540 MPXV_155_RIGHT 1 - GCCGTGGGTGTTAGTTGTCTAG -MT903345 186757 186779 MPXV_156_LEFT 2 + ACAGTTCGCCCGATATCTACCA -MT903345 188744 188766 MPXV_156_RIGHT 2 - CAGAGGCCAGCGTTAGAGATTC -MT903345 188008 188030 MPXV_157_LEFT 1 + TCGTTCTCCTCGGTGTCATAGT -MT903345 189896 189921 MPXV_157_RIGHT 1 - CCAGCTAACATAAGAGCCAATCTCA -MT903345 189166 189188 MPXV_158_LEFT 2 + TTCACAATGGCCTCTCCTTGTG -MT903345 191049 191071 MPXV_158_RIGHT 2 - TCGTGAAACTGCTCATCGACAG -MT903345 190199 190221 MPXV_159_LEFT 1 + ACTAGTTTGCTGCGTAGTTGCA -MT903345 192192 192214 MPXV_159_RIGHT 1 - ACCTGCTCGGTTACTTCTGTGT -MT903345 191597 191620 MPXV_160_LEFT 2 + AGGGGATTCCTTGTAGATGAACC -MT903345 193193 193215 MPXV_160_RIGHT 2 - CGCGTAGATGAATCGCTTCTCA -MT903345 192591 192613 MPXV_161_LEFT 1 + GAGATTGTGCGCATCGTTAACG -MT903345 194274 194296 MPXV_161_RIGHT 1 - GATGGTAGTCGCTTAGCTTGGT -MT903345 193264 193286 MPXV_162_LEFT 2 + CGCCGTTACACACTTACCTTCA -MT903345 195268 195290 MPXV_162_RIGHT 2 - CGTCTCTGAATGCGGCATGATA -MT903345 194788 194810 MPXV_163_LEFT 1 + AGGAGCATCAGGGTGTAGAACA -MT903345 196402 196424 MPXV_163_RIGHT 1 - TTTAATTCGTGGTGCGGTGTCT diff --git a/mpxv/yale/v3/scheme.bed b/mpxv/yale/v3/scheme.bed deleted file mode 100644 index dfd2709..0000000 --- a/mpxv/yale/v3/scheme.bed +++ /dev/null @@ -1,326 +0,0 @@ -MT903345 356 378 MPXV_1_LEFT 1 + -MT903345 2395 2417 MPXV_1_RIGHT 1 - -MT903345 1439 1461 MPXV_2_LEFT 2 + -MT903345 3353 3375 MPXV_2_RIGHT 2 - -MT903345 2606 2628 MPXV_3_LEFT 1 + -MT903345 4593 4615 MPXV_3_RIGHT 1 - -MT903345 3990 4012 MPXV_4_LEFT 2 + -MT903345 5584 5607 MPXV_4_RIGHT 2 - -MT903345 4991 5013 MPXV_5_LEFT 1 + -MT903345 7027 7049 MPXV_5_RIGHT 1 - -MT903345 6134 6156 MPXV_6_LEFT 2 + -MT903345 8202 8224 MPXV_6_RIGHT 2 - -MT903345 7417 7439 MPXV_7_LEFT 1 + -MT903345 9405 9427 MPXV_7_RIGHT 1 - -MT903345 8858 8880 MPXV_8_LEFT 2 + -MT903345 10646 10668 MPXV_8_RIGHT 2 - -MT903345 9767 9789 MPXV_9_LEFT 1 + -MT903345 11731 11753 MPXV_9_RIGHT 1 - -MT903345 10729 10751 MPXV_10_LEFT 2 + -MT903345 12880 12902 MPXV_10_RIGHT 2 - -MT903345 12290 12312 MPXV_11_LEFT 1 + -MT903345 14020 14042 MPXV_11_RIGHT 1 - -MT903345 13079 13101 MPXV_12_LEFT 2 + -MT903345 15347 15369 MPXV_12_RIGHT 2 - -MT903345 14663 14685 MPXV_13_LEFT 1 + -MT903345 16733 16755 MPXV_13_RIGHT 1 - -MT903345 15866 15888 MPXV_14_LEFT 2 + -MT903345 18116 18138 MPXV_14_RIGHT 2 - -MT903345 17282 17304 MPXV_15_LEFT 1 + -MT903345 19262 19284 MPXV_15_RIGHT 1 - -MT903345 18294 18316 MPXV_16_LEFT 2 + -MT903345 20256 20278 MPXV_16_RIGHT 2 - -MT903345 19740 19762 MPXV_17_LEFT 1 + -MT903345 21690 21712 MPXV_17_RIGHT 1 - -MT903345 21069 21091 MPXV_18_LEFT 2 + -MT903345 22848 22870 MPXV_18_RIGHT 2 - -MT903345 22029 22051 MPXV_19_LEFT 1 + -MT903345 23931 23953 MPXV_19_RIGHT 1 - -MT903345 23058 23080 MPXV_20_LEFT 2 + -MT903345 24880 24902 MPXV_20_RIGHT 2 - -MT903345 23975 23997 MPXV_21_LEFT 1 + -MT903345 26160 26182 MPXV_21_RIGHT 1 - -MT903345 25311 25333 MPXV_22_LEFT 2 + -MT903345 27552 27574 MPXV_22_RIGHT 2 - -MT903345 26810 26832 MPXV_23_LEFT 1 + -MT903345 28859 28881 MPXV_23_RIGHT 1 - -MT903345 27858 27880 MPXV_24_LEFT 2 + -MT903345 30041 30063 MPXV_24_RIGHT 2 - -MT903345 29492 29514 MPXV_25_LEFT 1 + -MT903345 31057 31079 MPXV_25_RIGHT 1 - -MT903345 30136 30158 MPXV_26_LEFT 2 + -MT903345 32426 32448 MPXV_26_RIGHT 2 - -MT903345 31730 31752 MPXV_27_LEFT 1 + -MT903345 33548 33570 MPXV_27_RIGHT 1 - -MT903345 33000 33022 MPXV_28_LEFT 2 + -MT903345 34964 34986 MPXV_28_RIGHT 2 - -MT903345 34181 34203 MPXV_29_LEFT 1 + -MT903345 36344 36366 MPXV_29_RIGHT 1 - -MT903345 35632 35654 MPXV_30_LEFT 2 + -MT903345 37370 37392 MPXV_30_RIGHT 2 - -MT903345 36423 36445 MPXV_31_LEFT 1 + -MT903345 38633 38655 MPXV_31_RIGHT 1 - -MT903345 37903 37925 MPXV_32_LEFT 2 + -MT903345 39666 39688 MPXV_32_RIGHT 2 - -MT903345 38939 38961 MPXV_33_LEFT 1 + -MT903345 40939 40961 MPXV_33_RIGHT 1 - -MT903345 40025 40047 MPXV_34_LEFT 2 + -MT903345 42129 42151 MPXV_34_RIGHT 2 - -MT903345 41186 41208 MPXV_35_LEFT 1 + -MT903345 43252 43274 MPXV_35_RIGHT 1 - -MT903345 42576 42598 MPXV_36_LEFT 2 + -MT903345 44393 44415 MPXV_36_RIGHT 2 - -MT903345 43813 43835 MPXV_37_LEFT 1 + -MT903345 45826 45848 MPXV_37_RIGHT 1 - -MT903345 45265 45287 MPXV_38_LEFT 2 + -MT903345 47160 47182 MPXV_38_RIGHT 2 - -MT903345 46384 46406 MPXV_39_LEFT 1 + -MT903345 48581 48603 MPXV_39_RIGHT 1 - -MT903345 47887 47909 MPXV_40_LEFT 2 + -MT903345 49557 49579 MPXV_40_RIGHT 2 - -MT903345 49014 49036 MPXV_41_LEFT 1 + -MT903345 50960 50982 MPXV_41_RIGHT 1 - -MT903345 50015 50037 MPXV_42_LEFT 2 + -MT903345 52313 52335 MPXV_42_RIGHT 2 - -MT903345 51409 51431 MPXV_43_LEFT 1 + -MT903345 53382 53404 MPXV_43_RIGHT 1 - -MT903345 52745 52767 MPXV_44_LEFT 2 + -MT903345 54376 54398 MPXV_44_RIGHT 2 - -MT903345 53797 53819 MPXV_45_LEFT 1 + -MT903345 55509 55531 MPXV_45_RIGHT 1 - -MT903345 54852 54874 MPXV_46_LEFT 2 + -MT903345 56830 56852 MPXV_46_RIGHT 2 - -MT903345 55974 55996 MPXV_47_LEFT 1 + -MT903345 57890 57912 MPXV_47_RIGHT 1 - -MT903345 57233 57255 MPXV_48_LEFT 2 + -MT903345 59232 59254 MPXV_48_RIGHT 2 - -MT903345 58683 58705 MPXV_49_LEFT 1 + -MT903345 60300 60322 MPXV_49_RIGHT 1 - -MT903345 59317 59339 MPXV_50_LEFT 2 + -MT903345 61288 61310 MPXV_50_RIGHT 2 - -MT903345 60711 60733 MPXV_51_LEFT 1 + -MT903345 62585 62607 MPXV_51_RIGHT 1 - -MT903345 61791 61813 MPXV_52_LEFT 2 + -MT903345 63941 63963 MPXV_52_RIGHT 2 - -MT903345 63140 63162 MPXV_53_LEFT 1 + -MT903345 64969 64991 MPXV_53_RIGHT 1 - -MT903345 64237 64259 MPXV_54_LEFT 2 + -MT903345 66153 66175 MPXV_54_RIGHT 2 - -MT903345 65306 65328 MPXV_55_LEFT 1 + -MT903345 67356 67378 MPXV_55_RIGHT 1 - -MT903345 66510 66532 MPXV_56_LEFT 2 + -MT903345 68422 68444 MPXV_56_RIGHT 2 - -MT903345 67453 67475 MPXV_57_LEFT 1 + -MT903345 69517 69539 MPXV_57_RIGHT 1 - -MT903345 68682 68704 MPXV_58_LEFT 2 + -MT903345 70481 70503 MPXV_58_RIGHT 2 - -MT903345 69722 69744 MPXV_59_LEFT 1 + -MT903345 71941 71963 MPXV_59_RIGHT 1 - -MT903345 71216 71238 MPXV_60_LEFT 2 + -MT903345 73103 73125 MPXV_60_RIGHT 2 - -MT903345 72358 72380 MPXV_61_LEFT 1 + -MT903345 74275 74297 MPXV_61_RIGHT 1 - -MT903345 73551 73573 MPXV_62_LEFT 2 + -MT903345 75439 75461 MPXV_62_RIGHT 2 - -MT903345 74533 74555 MPXV_63_LEFT 1 + -MT903345 76557 76579 MPXV_63_RIGHT 1 - -MT903345 75823 75845 MPXV_64_LEFT 2 + -MT903345 77575 77597 MPXV_64_RIGHT 2 - -MT903345 76756 76778 MPXV_65_LEFT 1 + -MT903345 78814 78836 MPXV_65_RIGHT 1 - -MT903345 77896 77919 MPXV_66_LEFT 2 + -MT903345 80075 80097 MPXV_66_RIGHT 2 - -MT903345 79176 79198 MPXV_67_LEFT 1 + -MT903345 81264 81286 MPXV_67_RIGHT 1 - -MT903345 80668 80691 MPXV_68_LEFT 2 + -MT903345 82491 82513 MPXV_68_RIGHT 2 - -MT903345 81726 81748 MPXV_69_LEFT 1 + -MT903345 83678 83700 MPXV_69_RIGHT 1 - -MT903345 83016 83038 MPXV_70_LEFT 2 + -MT903345 84751 84773 MPXV_70_RIGHT 2 - -MT903345 83959 83981 MPXV_71_LEFT 1 + -MT903345 85799 85821 MPXV_71_RIGHT 1 - -MT903345 85165 85187 MPXV_72_LEFT 2 + -MT903345 87066 87088 MPXV_72_RIGHT 2 - -MT903345 86488 86510 MPXV_73_LEFT 1 + -MT903345 88323 88345 MPXV_73_RIGHT 1 - -MT903345 87600 87622 MPXV_74_LEFT 2 + -MT903345 89649 89671 MPXV_74_RIGHT 2 - -MT903345 88702 88726 MPXV_75_LEFT 1 + -MT903345 91056 91078 MPXV_75_RIGHT 1 - -MT903345 90360 90382 MPXV_76_LEFT 2 + -MT903345 92246 92268 MPXV_76_RIGHT 2 - -MT903345 91464 91486 MPXV_77_LEFT 1 + -MT903345 93361 93383 MPXV_77_RIGHT 1 - -MT903345 92707 92729 MPXV_78_LEFT 2 + -MT903345 94547 94570 MPXV_78_RIGHT 2 - -MT903345 93852 93874 MPXV_79_LEFT 1 + -MT903345 95607 95629 MPXV_79_RIGHT 1 - -MT903345 94872 94894 MPXV_80_LEFT 2 + -MT903345 96654 96676 MPXV_80_RIGHT 2 - -MT903345 95897 95919 MPXV_81_LEFT 1 + -MT903345 97806 97828 MPXV_81_RIGHT 1 - -MT903345 97210 97232 MPXV_82_LEFT 2 + -MT903345 99077 99099 MPXV_82_RIGHT 2 - -MT903345 98139 98161 MPXV_83_LEFT 1 + -MT903345 100447 100469 MPXV_83_RIGHT 1 - -MT903345 99465 99487 MPXV_84_LEFT 2 + -MT903345 101705 101727 MPXV_84_RIGHT 2 - -MT903345 101077 101099 MPXV_85_LEFT 1 + -MT903345 102833 102855 MPXV_85_RIGHT 1 - -MT903345 101916 101938 MPXV_86_LEFT 2 + -MT903345 103806 103828 MPXV_86_RIGHT 2 - -MT903345 103235 103257 MPXV_87_LEFT 1 + -MT903345 105068 105090 MPXV_87_RIGHT 1 - -MT903345 104047 104069 MPXV_88_LEFT 2 + -MT903345 106298 106320 MPXV_88_RIGHT 2 - -MT903345 105407 105429 MPXV_89_LEFT 1 + -MT903345 107404 107426 MPXV_89_RIGHT 1 - -MT903345 106746 106768 MPXV_90_LEFT 2 + -MT903345 108585 108607 MPXV_90_RIGHT 2 - -MT903345 107927 107949 MPXV_91_LEFT 1 + -MT903345 109870 109892 MPXV_91_RIGHT 1 - -MT903345 109250 109272 MPXV_92_LEFT 2 + -MT903345 111172 111194 MPXV_92_RIGHT 2 - -MT903345 110548 110570 MPXV_93_LEFT 1 + -MT903345 112346 112368 MPXV_93_RIGHT 1 - -MT903345 111725 111747 MPXV_94_LEFT 2 + -MT903345 113489 113511 MPXV_94_RIGHT 2 - -MT903345 112793 112815 MPXV_95_LEFT 1 + -MT903345 114896 114918 MPXV_95_RIGHT 1 - -MT903345 114028 114050 MPXV_96_LEFT 2 + -MT903345 116193 116216 MPXV_96_RIGHT 2 - -MT903345 115648 115670 MPXV_97_LEFT 1 + -MT903345 117548 117570 MPXV_97_RIGHT 1 - -MT903345 116880 116902 MPXV_98_LEFT 2 + -MT903345 118585 118607 MPXV_98_RIGHT 2 - -MT903345 117756 117778 MPXV_99_LEFT 1 + -MT903345 119762 119784 MPXV_99_RIGHT 1 - -MT903345 118947 118969 MPXV_100_LEFT 2 + -MT903345 120739 120761 MPXV_100_RIGHT 2 - -MT903345 120255 120277 MPXV_101_LEFT 1 + -MT903345 121948 121970 MPXV_101_RIGHT 1 - -MT903345 121324 121346 MPXV_102_LEFT 2 + -MT903345 122954 122976 MPXV_102_RIGHT 2 - -MT903345 122348 122370 MPXV_103_LEFT 1 + -MT903345 124294 124316 MPXV_103_RIGHT 1 - -MT903345 123607 123629 MPXV_104_LEFT 2 + -MT903345 125605 125627 MPXV_104_RIGHT 2 - -MT903345 124669 124691 MPXV_105_LEFT 1 + -MT903345 126984 127006 MPXV_105_RIGHT 1 - -MT903345 126327 126349 MPXV_106_LEFT 2 + -MT903345 128363 128385 MPXV_106_RIGHT 2 - -MT903345 127456 127478 MPXV_107_LEFT 1 + -MT903345 129806 129828 MPXV_107_RIGHT 1 - -MT903345 128995 129017 MPXV_108_LEFT 2 + -MT903345 131239 131261 MPXV_108_RIGHT 2 - -MT903345 130359 130381 MPXV_109_LEFT 1 + -MT903345 132681 132703 MPXV_109_RIGHT 1 - -MT903345 132061 132083 MPXV_110_LEFT 2 + -MT903345 133984 134006 MPXV_110_RIGHT 2 - -MT903345 133125 133147 MPXV_111_LEFT 1 + -MT903345 135056 135078 MPXV_111_RIGHT 1 - -MT903345 134041 134063 MPXV_112_LEFT 2 + -MT903345 136220 136242 MPXV_112_RIGHT 2 - -MT903345 135188 135210 MPXV_113_LEFT 1 + -MT903345 137446 137468 MPXV_113_RIGHT 1 - -MT903345 136636 136658 MPXV_114_LEFT 2 + -MT903345 138456 138478 MPXV_114_RIGHT 2 - -MT903345 137753 137775 MPXV_115_LEFT 1 + -MT903345 139755 139777 MPXV_115_RIGHT 1 - -MT903345 139065 139088 MPXV_116_LEFT 2 + -MT903345 141135 141157 MPXV_116_RIGHT 2 - -MT903345 140505 140527 MPXV_117_LEFT 1 + -MT903345 142493 142515 MPXV_117_RIGHT 1 - -MT903345 141726 141748 MPXV_118_LEFT 2 + -MT903345 143899 143921 MPXV_118_RIGHT 2 - -MT903345 143125 143147 MPXV_119_LEFT 1 + -MT903345 145129 145151 MPXV_119_RIGHT 1 - -MT903345 144221 144243 MPXV_120_LEFT 2 + -MT903345 146504 146526 MPXV_120_RIGHT 2 - -MT903345 145683 145705 MPXV_121_LEFT 1 + -MT903345 147491 147515 MPXV_121_RIGHT 1 - -MT903345 146655 146677 MPXV_122_LEFT 2 + -MT903345 148776 148798 MPXV_122_RIGHT 2 - -MT903345 148194 148216 MPXV_123_LEFT 1 + -MT903345 150016 150038 MPXV_123_RIGHT 1 - -MT903345 149180 149202 MPXV_124_LEFT 2 + -MT903345 151244 151266 MPXV_124_RIGHT 2 - -MT903345 150457 150479 MPXV_125_LEFT 1 + -MT903345 152584 152606 MPXV_125_RIGHT 1 - -MT903345 151815 151837 MPXV_126_LEFT 2 + -MT903345 153595 153617 MPXV_126_RIGHT 2 - -MT903345 152655 152677 MPXV_127_LEFT 1 + -MT903345 154813 154835 MPXV_127_RIGHT 1 - -MT903345 153992 154014 MPXV_128_LEFT 2 + -MT903345 155899 155921 MPXV_128_RIGHT 2 - -MT903345 155006 155028 MPXV_129_LEFT 1 + -MT903345 157303 157325 MPXV_129_RIGHT 1 - -MT903345 156543 156565 MPXV_130_LEFT 2 + -MT903345 158259 158281 MPXV_130_RIGHT 2 - -MT903345 157783 157805 MPXV_131_LEFT 1 + -MT903345 159433 159455 MPXV_131_RIGHT 1 - -MT903345 158398 158421 MPXV_132_LEFT 2 + -MT903345 160872 160895 MPXV_132_RIGHT 2 - -MT903345 160098 160120 MPXV_133_LEFT 1 + -MT903345 162057 162079 MPXV_133_RIGHT 1 - -MT903345 161313 161335 MPXV_134_LEFT 2 + -MT903345 163043 163065 MPXV_134_RIGHT 2 - -MT903345 162555 162577 MPXV_135_LEFT 1 + -MT903345 164489 164511 MPXV_135_RIGHT 1 - -MT903345 163858 163880 MPXV_136_LEFT 2 + -MT903345 165513 165535 MPXV_136_RIGHT 2 - -MT903345 164937 164960 MPXV_137_LEFT 1 + -MT903345 166946 166968 MPXV_137_RIGHT 1 - -MT903345 165993 166015 MPXV_138_LEFT 2 + -MT903345 168215 168237 MPXV_138_RIGHT 2 - -MT903345 167503 167525 MPXV_139_LEFT 1 + -MT903345 169254 169276 MPXV_139_RIGHT 1 - -MT903345 168314 168336 MPXV_140_LEFT 2 + -MT903345 170374 170396 MPXV_140_RIGHT 2 - -MT903345 169602 169628 MPXV_141_LEFT 1 + -MT903345 171509 171531 MPXV_141_RIGHT 1 - -MT903345 170931 170953 MPXV_142_LEFT 2 + -MT903345 172513 172535 MPXV_142_RIGHT 2 - -MT903345 171898 171920 MPXV_143_LEFT 1 + -MT903345 173581 173603 MPXV_143_RIGHT 1 - -MT903345 173009 173031 MPXV_144_LEFT 2 + -MT903345 174796 174818 MPXV_144_RIGHT 2 - -MT903345 174125 174147 MPXV_145_LEFT 1 + -MT903345 176213 176235 MPXV_145_RIGHT 1 - -MT903345 175337 175359 MPXV_146_LEFT 2 + -MT903345 177271 177293 MPXV_146_RIGHT 2 - -MT903345 176298 176321 MPXV_147_LEFT 1 + -MT903345 178300 178322 MPXV_147_RIGHT 1 - -MT903345 177434 177456 MPXV_148_LEFT 2 + -MT903345 179327 179349 MPXV_148_RIGHT 2 - -MT903345 178763 178785 MPXV_149_LEFT 1 + -MT903345 180553 180575 MPXV_149_RIGHT 1 - -MT903345 179672 179694 MPXV_150_LEFT 2 + -MT903345 181536 181558 MPXV_150_RIGHT 2 - -MT903345 181043 181065 MPXV_151_LEFT 1 + -MT903345 182725 182747 MPXV_151_RIGHT 1 - -MT903345 182098 182121 MPXV_152_LEFT 2 + -MT903345 183821 183843 MPXV_152_RIGHT 2 - -MT903345 182924 182946 MPXV_153_LEFT 1 + -MT903345 184806 184828 MPXV_153_RIGHT 1 - -MT903345 184067 184089 MPXV_154_LEFT 2 + -MT903345 186170 186192 MPXV_154_RIGHT 2 - -MT903345 185280 185302 MPXV_155_LEFT 1 + -MT903345 187518 187540 MPXV_155_RIGHT 1 - -MT903345 186757 186779 MPXV_156_LEFT 2 + -MT903345 188744 188766 MPXV_156_RIGHT 2 - -MT903345 188008 188030 MPXV_157_LEFT 1 + -MT903345 189896 189921 MPXV_157_RIGHT 1 - -MT903345 189166 189188 MPXV_158_LEFT 2 + -MT903345 191049 191071 MPXV_158_RIGHT 2 - -MT903345 190199 190221 MPXV_159_LEFT 1 + -MT903345 192192 192214 MPXV_159_RIGHT 1 - -MT903345 191597 191620 MPXV_160_LEFT 2 + -MT903345 193193 193215 MPXV_160_RIGHT 2 - -MT903345 192591 192613 MPXV_161_LEFT 1 + -MT903345 194274 194296 MPXV_161_RIGHT 1 - -MT903345 193264 193286 MPXV_162_LEFT 2 + -MT903345 195268 195290 MPXV_162_RIGHT 2 - -MT903345 194788 194810 MPXV_163_LEFT 1 + -MT903345 196402 196424 MPXV_163_RIGHT 1 - diff --git a/niv/nipah/v1/info.yml b/niv/nipah/v1/info.yml deleted file mode 100644 index 3c1b216..0000000 --- a/niv/nipah/v1/info.yml +++ /dev/null @@ -1,10 +0,0 @@ -schema_version: 0.9.0 -name: nipah-v1 -organism: niv -developers: -- organisation_name: ARTIC network - home_page: https://artic.network -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/niv/nipah/v1 -primer_checksum: primaschema:a56163858bad2307 -reference_checksum: primaschema:97e2ee3d469ba0b4 diff --git a/niv/nipah/v1/primer.bed b/niv/nipah/v1/primer.bed deleted file mode 100644 index 3e046e1..0000000 --- a/niv/nipah/v1/primer.bed +++ /dev/null @@ -1,120 +0,0 @@ -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1 27 NiV_6_Malaysia_1_LEFT 1 + CCAAACAAGGGAGAATATGGATACGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 378 401 NiV_6_Malaysia_1_RIGHT 1 - TGTCTGGGTCATTGAGGAGACTT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 319 341 NiV_6_Malaysia_2_LEFT 2 + GTTGGAGCTGCTTTCACACTCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 702 726 NiV_6_Malaysia_2_RIGHT 2 - GGATTGACTCTCTTTTGTTGGACG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 640 662 NiV_6_Malaysia_3_LEFT 1 + GCTAAAGCAGTTACAGCTCCCG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1004 1028 NiV_6_Malaysia_3_RIGHT 1 - GGCCAATTTCTCTGTAGAGTAGCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 943 965 NiV_6_Malaysia_4_LEFT 2 + AGGTATCCAGCACTTGCACTCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1308 1330 NiV_6_Malaysia_4_RIGHT 2 - ACTCTCTTGCCTTCCTGCTGAT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1239 1263 NiV_6_Malaysia_5_LEFT 1 + GAACATGGCAAATAGACTGGGACT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1617 1639 NiV_6_Malaysia_5_RIGHT 1 - TTCCCCTTGAGTTCTGTTGCTG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1545 1567 NiV_6_Malaysia_6_LEFT 2 + CCTCAGATCAAGACTGGCTGCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1900 1929 NiV_6_Malaysia_6_RIGHT 2 - ACACTAATAGTTCAAGATTTTGAGCAAGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1840 1862 NiV_6_Malaysia_7_LEFT 1 + ATGGGCAAACCGAAGAACCAAT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 2212 2234 NiV_6_Malaysia_7_RIGHT 1 - AGATTGCAGTTCACTTGTGCGA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 2179 2204 NiV_6_Malaysia_8_LEFT 2 + CACTTAACTTGACCAAGGTCTACCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 2538 2560 NiV_6_Malaysia_8_RIGHT 2 - GTGCACTGCAGAAAATCTTCCC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 2477 2501 NiV_6_Malaysia_9_LEFT 1 + CAGAAGACATACGGACGATCAAGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 2831 2857 NiV_6_Malaysia_9_RIGHT 1 - ACAAGACATACATTCCCATTGTTTGC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 2798 2820 NiV_6_Malaysia_10_LEFT 2 + CCTGAGAGAGGGTGGAGTGATT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 3156 3179 NiV_6_Malaysia_10_RIGHT 2 - TGAGCTTCCTGCAAACTCATCTT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 3113 3138 NiV_6_Malaysia_11_LEFT 1 + TTGTACACATCAGATGACGAAGAGG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 3471 3493 NiV_6_Malaysia_11_RIGHT 1 - GGAGGCTGAGCATCTTTCCCTT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 3435 3457 NiV_6_Malaysia_12_LEFT 2 + AGCTGCTGAAGGAGAACTCACT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 3795 3817 NiV_6_Malaysia_12_RIGHT 2 - TCGTTGTCGTCTACGGGGTTTA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 3718 3740 NiV_6_Malaysia_13_LEFT 1 + AGAAGGCAAGAGTGTCAATGCG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4089 4111 NiV_6_Malaysia_13_RIGHT 1 - CCTTCAATGGTTGAGAGTGCGG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4008 4037 NiV_6_Malaysia_14_LEFT 2 + ACATTGAAGAACAAGTTAAAGAGATCCCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4364 4388 NiV_6_Malaysia_14_RIGHT 2 - TCTGGATGAATCATCTGCCATAGG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4283 4305 NiV_6_Malaysia_15_LEFT 1 + TATGGGGCAGCTGTACAGTTGA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4652 4674 NiV_6_Malaysia_15_RIGHT 1 - TGTGTTATCGTCTGAGGGCTGG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4571 4596 NiV_6_Malaysia_16_LEFT 2 + ACAATCTCCCACAAGTAGACAATGG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4924 4951 NiV_6_Malaysia_16_RIGHT 2 - TGCGTGAGAGATCTACAATACAAATCG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4878 4907 NiV_6_Malaysia_17_LEFT 1 + ACAATGATGTCAACTTTCATACCTAAACA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 5246 5269 NiV_6_Malaysia_17_RIGHT 1 - AGCTCCTGGGGTATAGATCTTGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 5175 5197 NiV_6_Malaysia_18_LEFT 2 + TTGGGAGCATGGTGGGTATCTT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 5567 5589 NiV_6_Malaysia_18_RIGHT 2 - TCAACGTTCCGACAAACCTTGA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 5500 5522 NiV_6_Malaysia_19_LEFT 1 + TCTGGCCCTCTAAATCACCTCG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 5873 5901 NiV_6_Malaysia_19_RIGHT 1 - TGCAATTTCATCCTATCAATCTTCCTCC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 5792 5814 NiV_6_Malaysia_20_LEFT 2 + GCTTCAAGGTTGCCTCCTTCAT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 6145 6172 NiV_6_Malaysia_20_RIGHT 2 - TTCTGTTTAGCCCTTTAGAATTCTCCC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 6081 6103 NiV_6_Malaysia_21_LEFT 1 + TGTGTTGCAGCCTTCTATTCCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 6462 6487 NiV_6_Malaysia_21_RIGHT 1 - AAACCAGGAATTTCTTTGCCTTTCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 6403 6429 NiV_6_Malaysia_22_LEFT 2 + ACAAGCATTCTTACCATTGGATCAAC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 6760 6785 NiV_6_Malaysia_22_RIGHT 2 - TCTTGTTACTCCTTTGACAAGTCCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 6711 6733 NiV_6_Malaysia_23_LEFT 1 + TCTCGGAGTGTAGTGTTGGGAT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7072 7097 NiV_6_Malaysia_23_RIGHT 1 - TTTGAGTTTGTTGATGTTGTCAGCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7026 7048 NiV_6_Malaysia_24_LEFT 2 + CAGCTCAAATCACTGCAGGTGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7385 7409 NiV_6_Malaysia_24_RIGHT 2 - GTCTTCTGTAGCGTAACCCAATGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7346 7368 NiV_6_Malaysia_25_LEFT 1 + TCTCAGGCATTCGGTGGAAATT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7708 7733 NiV_6_Malaysia_25_RIGHT 1 - AGTCGATCCCGTTAAACATTCTCTC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7660 7682 NiV_6_Malaysia_26_LEFT 2 + GAGCGTGATCTGCAACCAAGAT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8027 8052 NiV_6_Malaysia_26_RIGHT 2 - AGGACTGATTCATGCTGGATATCTG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7932 7956 NiV_6_Malaysia_27_LEFT 1 + TCAGCTTAGGGAAATATCTGGGGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8284 8312 NiV_6_Malaysia_27_RIGHT 1 - TTCATCAATCTGAATACACTATGTCCCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8244 8267 NiV_6_Malaysia_28_LEFT 2 + GGAGAGTCAGACCTACAAGCAGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8604 8632 NiV_6_Malaysia_28_RIGHT 2 - ATTTTCTTGGTCGAAATGCTATTGTAGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8503 8526 NiV_6_Malaysia_29_LEFT 1 + ACACGAGCGCTAACCTATACACT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8869 8893 NiV_6_Malaysia_29_RIGHT 1 - ACGTCAACAATACTTTCCTTCCCC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8821 8850 NiV_6_Malaysia_30_LEFT 2 + TCCTATAATCACATCATAGGAGTGAACCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 9191 9213 NiV_6_Malaysia_30_RIGHT 2 - GGATACCCTGCAACGCATCTTT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 9150 9178 NiV_6_Malaysia_31_LEFT 1 + TCCAAAATTACACAAGATCAACAGACAA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 9506 9531 NiV_6_Malaysia_31_RIGHT 1 - TCTGATTAGATGTCTTTTGCAGGCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 9460 9482 NiV_6_Malaysia_32_LEFT 2 + ACAGACAGAAGGGGTGAGCAAT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 9829 9851 NiV_6_Malaysia_32_RIGHT 2 - AGGGTCTCCAACAGTTGACACT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 9751 9773 NiV_6_Malaysia_33_LEFT 1 + CTGGACCCCACCAAATCCAAAC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10124 10148 NiV_6_Malaysia_33_RIGHT 1 - TCTAATCCCCATAGATAGCCTGCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10075 10100 NiV_6_Malaysia_34_LEFT 2 + TGATTCAAATTGTCCCATCACGAAG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10441 10463 NiV_6_Malaysia_34_RIGHT 2 - AACTCCTTCCCAGCAGATCTCT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10384 10408 NiV_6_Malaysia_35_LEFT 1 + TAACACGGTAATATCAAGACCCGG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10735 10764 NiV_6_Malaysia_35_RIGHT 1 - ATGAGGTTGATTTTTATGTACATTGCTCT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10671 10698 NiV_6_Malaysia_36_LEFT 2 + TGGTTGAGATATATGACACAGGAGACA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11029 11052 NiV_6_Malaysia_36_RIGHT 2 - TCGGGCCGAAAATACTAAGTCTC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10940 10965 NiV_6_Malaysia_37_LEFT 1 + TCTTGATCGGTGATCTTTGAGAACA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11308 11333 NiV_6_Malaysia_37_RIGHT 1 - GGTAACAACGCTTTCAGTCTATGGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11261 11283 NiV_6_Malaysia_38_LEFT 2 + ACCCAGGTCCTTGATTATGCCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11614 11644 NiV_6_Malaysia_38_RIGHT 2 - TTTATGTTGTTTCTAATGTAATCACCCTGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11525 11550 NiV_6_Malaysia_39_LEFT 1 + CAGCCCAGTGATGATAAAAGACTGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11881 11910 NiV_6_Malaysia_39_RIGHT 1 - ACCATTTAGATTGACTCATATTCTTCCCT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11788 11813 NiV_6_Malaysia_40_LEFT 2 + TGGGATGCTGCAAAATATCACTAGA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 12151 12175 NiV_6_Malaysia_40_RIGHT 2 - TCCGATTTGACTGTTGTCTCCATC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 12097 12123 NiV_6_Malaysia_41_LEFT 1 + TCTTACACCCGAAATGGTTCTAATGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 12469 12494 NiV_6_Malaysia_41_RIGHT 1 - ACGAAAGAAAGAAAAGAACTCTGCC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 12378 12403 NiV_6_Malaysia_42_LEFT 2 + TGAGTGAGTGTGGTTTTACAGATCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 12749 12773 NiV_6_Malaysia_42_RIGHT 2 - TTGAATCCCACAGAATGATTCCCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 12712 12737 NiV_6_Malaysia_43_LEFT 1 + TGGGGAATCTTTGACCATTGATGAC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13074 13097 NiV_6_Malaysia_43_RIGHT 1 - TGCACGCATTTTGTAGGTCATCT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13029 13053 NiV_6_Malaysia_44_LEFT 2 + GCTTGAAGGAGAAAGAGACGAAGC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13384 13409 NiV_6_Malaysia_44_RIGHT 2 - TCGTGTATTGGGTGACATGTTATGA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13346 13368 NiV_6_Malaysia_45_LEFT 1 + TCTGCTCTCAATAATCCGTGCC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13704 13726 NiV_6_Malaysia_45_RIGHT 1 - GGGCAATTAGGGTCTGCAACAT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13670 13694 NiV_6_Malaysia_46_LEFT 2 + TGGATGCACAAACGACTAGAAAGA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14028 14051 NiV_6_Malaysia_46_RIGHT 2 - TGTAGCTTTAAGATTGTGGCCGA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13968 13990 NiV_6_Malaysia_47_LEFT 1 + AGATCTGTGCAAAGCAAGCTCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14325 14348 NiV_6_Malaysia_47_RIGHT 1 - AATGGGAGATGTCACATCCAGTG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14279 14304 NiV_6_Malaysia_48_LEFT 2 + CAGCAGCTTCTCATATCAACTGAGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14651 14673 NiV_6_Malaysia_48_RIGHT 2 - TTGGGTTCGGTGAGTTCCTCAG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14595 14617 NiV_6_Malaysia_49_LEFT 1 + TGCCTGACTCACAAAGCATCAC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14946 14976 NiV_6_Malaysia_49_RIGHT 1 - TTGATGATATCAAGTCATTTTGTCTTCTGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14864 14888 NiV_6_Malaysia_50_LEFT 2 + AGTGGACTTCAGCCAAAGTTAGTT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 15228 15253 NiV_6_Malaysia_50_RIGHT 2 - TCCGATCTTTCATCCGTACTTGATC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 15148 15171 NiV_6_Malaysia_51_LEFT 1 + TGGGTGGTTCTTTGTACCTAGGG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 15534 15562 NiV_6_Malaysia_51_RIGHT 1 - TCTCCCTCAATTCTGAAATCTAGATTGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 15484 15506 NiV_6_Malaysia_52_LEFT 2 + TGCAGGGAGTGTACTCAACAGA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 15855 15881 NiV_6_Malaysia_52_RIGHT 2 - TTCCTCAGTTGACCATAAAGGAAAGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 15784 15806 NiV_6_Malaysia_53_LEFT 1 + TGATCCAGACCCCGTTTCAGAA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 16173 16196 NiV_6_Malaysia_53_RIGHT 1 - AGGATGTGACAAGGCATTTGACA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 16102 16126 NiV_6_Malaysia_54_LEFT 2 + AGGAAGACATACTATGGTCGACCT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 16455 16483 NiV_6_Malaysia_54_RIGHT 2 - TGTGGGTTTAGATCTATTATCCAAGGAG -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 16403 16433 NiV_6_Malaysia_55_LEFT 1 + ACATCCAAACATCTCTGTGTTATAATTGAC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 16758 16784 NiV_6_Malaysia_55_RIGHT 1 - TGCTGATTTTGTGTTCATAGACAGGA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 16709 16733 NiV_6_Malaysia_56_LEFT 2 + ACAGGAGTGTTAGACATCAGAGGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17077 17099 NiV_6_Malaysia_56_RIGHT 2 - CGTCAGAGATGGGTCTTCCTCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17033 17061 NiV_6_Malaysia_57_LEFT 1 + GGTCAAAGAGAACTGAAACTATTTCCCT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17399 17422 NiV_6_Malaysia_57_RIGHT 1 - GGGAAACACACCAGTACTAGTCC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17340 17362 NiV_6_Malaysia_58_LEFT 2 + TAGCATACACCCCTGGATTCCC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17701 17726 NiV_6_Malaysia_58_RIGHT 2 - TTCACTCTTAAGAATTTCTGGCCCA -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17669 17691 NiV_6_Malaysia_59_LEFT 1 + CAAGTACTTCTCCAAGCAGGGC -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 18025 18049 NiV_6_Malaysia_59_RIGHT 1 - CTTCTCTCTTGCATCCCTTTAGGT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17814 17836 NiV_6_Malaysia_60_LEFT 2 + ACAGATCACCTTCACACCACCT -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 18166 18196 NiV_6_Malaysia_60_RIGHT 2 - ACCTTAGATCAACATAAGTTATCAGTTGGT diff --git a/niv/nipah/v1/scheme.bed b/niv/nipah/v1/scheme.bed deleted file mode 100644 index 7a283b4..0000000 --- a/niv/nipah/v1/scheme.bed +++ /dev/null @@ -1,120 +0,0 @@ -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1 27 NiV_6_Malaysia_1_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 378 401 NiV_6_Malaysia_1_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 319 341 NiV_6_Malaysia_2_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 702 726 NiV_6_Malaysia_2_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 640 662 NiV_6_Malaysia_3_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1004 1028 NiV_6_Malaysia_3_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 943 965 NiV_6_Malaysia_4_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1308 1330 NiV_6_Malaysia_4_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1239 1263 NiV_6_Malaysia_5_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1617 1639 NiV_6_Malaysia_5_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1545 1567 NiV_6_Malaysia_6_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1900 1929 NiV_6_Malaysia_6_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 1840 1862 NiV_6_Malaysia_7_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 2212 2234 NiV_6_Malaysia_7_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 2179 2204 NiV_6_Malaysia_8_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 2538 2560 NiV_6_Malaysia_8_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 2477 2501 NiV_6_Malaysia_9_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 2831 2857 NiV_6_Malaysia_9_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 2798 2820 NiV_6_Malaysia_10_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 3156 3179 NiV_6_Malaysia_10_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 3113 3138 NiV_6_Malaysia_11_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 3471 3493 NiV_6_Malaysia_11_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 3435 3457 NiV_6_Malaysia_12_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 3795 3817 NiV_6_Malaysia_12_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 3718 3740 NiV_6_Malaysia_13_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4089 4111 NiV_6_Malaysia_13_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4008 4037 NiV_6_Malaysia_14_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4364 4388 NiV_6_Malaysia_14_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4283 4305 NiV_6_Malaysia_15_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4652 4674 NiV_6_Malaysia_15_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4571 4596 NiV_6_Malaysia_16_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4924 4951 NiV_6_Malaysia_16_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 4878 4907 NiV_6_Malaysia_17_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 5246 5269 NiV_6_Malaysia_17_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 5175 5197 NiV_6_Malaysia_18_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 5567 5589 NiV_6_Malaysia_18_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 5500 5522 NiV_6_Malaysia_19_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 5873 5901 NiV_6_Malaysia_19_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 5792 5814 NiV_6_Malaysia_20_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 6145 6172 NiV_6_Malaysia_20_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 6081 6103 NiV_6_Malaysia_21_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 6462 6487 NiV_6_Malaysia_21_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 6403 6429 NiV_6_Malaysia_22_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 6760 6785 NiV_6_Malaysia_22_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 6711 6733 NiV_6_Malaysia_23_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7072 7097 NiV_6_Malaysia_23_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7026 7048 NiV_6_Malaysia_24_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7385 7409 NiV_6_Malaysia_24_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7346 7368 NiV_6_Malaysia_25_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7708 7733 NiV_6_Malaysia_25_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7660 7682 NiV_6_Malaysia_26_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8027 8052 NiV_6_Malaysia_26_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 7932 7956 NiV_6_Malaysia_27_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8284 8312 NiV_6_Malaysia_27_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8244 8267 NiV_6_Malaysia_28_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8604 8632 NiV_6_Malaysia_28_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8503 8526 NiV_6_Malaysia_29_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8869 8893 NiV_6_Malaysia_29_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 8821 8850 NiV_6_Malaysia_30_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 9191 9213 NiV_6_Malaysia_30_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 9150 9178 NiV_6_Malaysia_31_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 9506 9531 NiV_6_Malaysia_31_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 9460 9482 NiV_6_Malaysia_32_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 9829 9851 NiV_6_Malaysia_32_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 9751 9773 NiV_6_Malaysia_33_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10124 10148 NiV_6_Malaysia_33_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10075 10100 NiV_6_Malaysia_34_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10441 10463 NiV_6_Malaysia_34_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10384 10408 NiV_6_Malaysia_35_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10735 10764 NiV_6_Malaysia_35_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10671 10698 NiV_6_Malaysia_36_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11029 11052 NiV_6_Malaysia_36_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 10940 10965 NiV_6_Malaysia_37_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11308 11333 NiV_6_Malaysia_37_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11261 11283 NiV_6_Malaysia_38_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11614 11644 NiV_6_Malaysia_38_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11525 11550 NiV_6_Malaysia_39_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11881 11910 NiV_6_Malaysia_39_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 11788 11813 NiV_6_Malaysia_40_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 12151 12175 NiV_6_Malaysia_40_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 12097 12123 NiV_6_Malaysia_41_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 12469 12494 NiV_6_Malaysia_41_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 12378 12403 NiV_6_Malaysia_42_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 12749 12773 NiV_6_Malaysia_42_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 12712 12737 NiV_6_Malaysia_43_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13074 13097 NiV_6_Malaysia_43_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13029 13053 NiV_6_Malaysia_44_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13384 13409 NiV_6_Malaysia_44_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13346 13368 NiV_6_Malaysia_45_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13704 13726 NiV_6_Malaysia_45_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13670 13694 NiV_6_Malaysia_46_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14028 14051 NiV_6_Malaysia_46_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 13968 13990 NiV_6_Malaysia_47_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14325 14348 NiV_6_Malaysia_47_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14279 14304 NiV_6_Malaysia_48_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14651 14673 NiV_6_Malaysia_48_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14595 14617 NiV_6_Malaysia_49_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14946 14976 NiV_6_Malaysia_49_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 14864 14888 NiV_6_Malaysia_50_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 15228 15253 NiV_6_Malaysia_50_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 15148 15171 NiV_6_Malaysia_51_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 15534 15562 NiV_6_Malaysia_51_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 15484 15506 NiV_6_Malaysia_52_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 15855 15881 NiV_6_Malaysia_52_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 15784 15806 NiV_6_Malaysia_53_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 16173 16196 NiV_6_Malaysia_53_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 16102 16126 NiV_6_Malaysia_54_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 16455 16483 NiV_6_Malaysia_54_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 16403 16433 NiV_6_Malaysia_55_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 16758 16784 NiV_6_Malaysia_55_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 16709 16733 NiV_6_Malaysia_56_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17077 17099 NiV_6_Malaysia_56_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17033 17061 NiV_6_Malaysia_57_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17399 17422 NiV_6_Malaysia_57_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17340 17362 NiV_6_Malaysia_58_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17701 17726 NiV_6_Malaysia_58_RIGHT 2 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17669 17691 NiV_6_Malaysia_59_LEFT 1 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 18025 18049 NiV_6_Malaysia_59_RIGHT 1 - -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 17814 17836 NiV_6_Malaysia_60_LEFT 2 + -NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 18166 18196 NiV_6_Malaysia_60_RIGHT 2 - diff --git a/sars-cov-2/artic/v1/info.yml b/sars-cov-2/artic/v1/info.yml deleted file mode 100644 index dd56245..0000000 --- a/sars-cov-2/artic/v1/info.yml +++ /dev/null @@ -1,15 +0,0 @@ -schema_version: 0.9.0 -name: artic-v1 -organism: sars-cov-2 -aliases: -- ARTIC/V1 -developers: -- organisation_name: ARTIC network - home_page: https://artic.network/ -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v1 -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -primer_scheme_status: DEPRECATED -primer_checksum: primaschema:e1560cb6d7bf5c04 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/artic/v1/primer.bed b/sars-cov-2/artic/v1/primer.bed deleted file mode 100644 index 7510fb4..0000000 --- a/sars-cov-2/artic/v1/primer.bed +++ /dev/null @@ -1,196 +0,0 @@ -MN908947.3 30 54 nCoV-2019_1_LEFT 1 + ACCAACCAACTTTCGATCTCTTGT -MN908947.3 385 410 nCoV-2019_1_RIGHT 1 - CATCTTTAAGATGTTGACGTGCCTC -MN908947.3 320 342 nCoV-2019_2_LEFT 2 + CTGTTTTACAGGTTCGCGACGT -MN908947.3 704 726 nCoV-2019_2_RIGHT 2 - TAAGGATCAGTGCCAAGCTCGT -MN908947.3 642 664 nCoV-2019_3_LEFT 1 + CGGTAATAAAGGAGCTGGTGGC -MN908947.3 1004 1028 nCoV-2019_3_RIGHT 1 - AAGGTGTCTGCAATTCATAGCTCT -MN908947.3 943 965 nCoV-2019_4_LEFT 2 + GGTGTATACTGCTGCCGTGAAC -MN908947.3 1312 1337 nCoV-2019_4_RIGHT 2 - CACAAGTAGTGGCACCTTCTTTAGT -MN908947.3 1242 1264 nCoV-2019_5_LEFT 1 + TGGTGAAACTTCATGGCAGACG -MN908947.3 1623 1651 nCoV-2019_5_RIGHT 1 - ATTGATGTTGACTTTCTCTTTTTGGAGT -MN908947.3 1573 1595 nCoV-2019_6_LEFT 2 + GGTGTTGTTGGAGAAGGTTCCG -MN908947.3 1942 1964 nCoV-2019_6_RIGHT 2 - TAGCGGCCTTCTGTAAAACACG -MN908947.3 1875 1897 nCoV-2019_7_LEFT 1 + ATCAGAGGCTGCTCGTGTTGTA -MN908947.3 2247 2269 nCoV-2019_7_RIGHT 1 - TGCACAGGTGACAATTTGTCCA -MN908947.3 2181 2205 nCoV-2019_8_LEFT 2 + AGAGTTTCTTAGAGACGGTTGGGA -MN908947.3 2568 2592 nCoV-2019_8_RIGHT 2 - GCTTCAACAGCTTCACTAGTAGGT -MN908947.3 2505 2529 nCoV-2019_9_LEFT 1 + TCCCACAGAAGTGTTAACAGAGGA -MN908947.3 2882 2904 nCoV-2019_9_RIGHT 1 - ATGACAGCATCTGCCACAACAC -MN908947.3 2826 2850 nCoV-2019_10_LEFT 2 + TGAGAAGTGCTCTGCCTATACAGT -MN908947.3 3183 3210 nCoV-2019_10_RIGHT 2 - TCATCTAACCAATCTTCTTCTTGCTCT -MN908947.3 3144 3166 nCoV-2019_11_LEFT 1 + GGAATTTGGTGCCACTTCTGCT -MN908947.3 3507 3531 nCoV-2019_11_RIGHT 1 - TCATCAGATTCAACTTGCATGGCA -MN908947.3 3460 3482 nCoV-2019_12_LEFT 2 + AAACATGGAGGAGGTGTTGCAG -MN908947.3 3826 3853 nCoV-2019_12_RIGHT 2 - TTCACTCTTCATTTCCAAAAAGCTTGA -MN908947.3 3771 3795 nCoV-2019_13_LEFT 1 + TCGCACAAATGTCTACTTAGCTGT -MN908947.3 4142 4164 nCoV-2019_13_RIGHT 1 - ACCACAGCAGTTAAAACACCCT -MN908947.3 4054 4077 nCoV-2019_14_LEFT 2 + CATCCAGATTCTGCCACTCTTGT -MN908947.3 4428 4450 nCoV-2019_14_RIGHT 2 - AGTTTCCACACAGACAGGCATT -MN908947.3 4294 4321 nCoV-2019_15_LEFT 1 + ACAGTGCTTAAAAAGTGTAAAAGTGCC -MN908947.3 4674 4696 nCoV-2019_15_RIGHT 1 - AACAGAAACTGTAGCTGGCACT -MN908947.3 4636 4658 nCoV-2019_16_LEFT 2 + AATTTGGAAGAAGCTGCTCGGT -MN908947.3 4995 5017 nCoV-2019_16_RIGHT 2 - CACAACTTGCGTGTGGAGGTTA -MN908947.3 4939 4966 nCoV-2019_17_LEFT 1 + CTTCTTTCTTTGAGAGAAGTGAGGACT -MN908947.3 5296 5321 nCoV-2019_17_RIGHT 1 - TTTGTTGGAGTGTTAACAATGCAGT -MN908947.3 5230 5259 nCoV-2019_18_LEFT 2 + TGGAAATACCCACAAGTTAATGGTTTAAC -MN908947.3 5620 5644 nCoV-2019_18_RIGHT 2 - AGCTTGTTTACCACACGTACAAGG -MN908947.3 5563 5586 nCoV-2019_19_LEFT 1 + GCTGTTATGTACATGGGCACACT -MN908947.3 5932 5957 nCoV-2019_19_RIGHT 1 - TGTCCAACTTAGGGTCAATTTCTGT -MN908947.3 5867 5894 nCoV-2019_20_LEFT 2 + ACAAAGAAAACAGTTACACAACAACCA -MN908947.3 6247 6272 nCoV-2019_20_RIGHT 2 - ACGTGGCTTTATTAGTTGCATTGTT -MN908947.3 6167 6196 nCoV-2019_21_LEFT 1 + TGGCTATTGATTATAAACACTACACACCC -MN908947.3 6528 6550 nCoV-2019_21_RIGHT 1 - TAGATCTGTGTGGCCAACCTCT -MN908947.3 6466 6495 nCoV-2019_22_LEFT 2 + ACTACCGAAGTTGTAGGAGACATTATACT -MN908947.3 6846 6873 nCoV-2019_22_RIGHT 2 - ACAGTATTCTTTGCTATAGTAGTCGGC -MN908947.3 6718 6745 nCoV-2019_23_LEFT 1 + ACAACTACTAACATAGTTACACGGTGT -MN908947.3 7092 7117 nCoV-2019_23_RIGHT 1 - ACCAGTACAGTAGGTTGCAATAGTG -MN908947.3 7035 7058 nCoV-2019_24_LEFT 2 + AGGCATGCCTTCTTACTGTACTG -MN908947.3 7389 7415 nCoV-2019_24_RIGHT 2 - ACATTCTAACCATAGCTGAAATCGGG -MN908947.3 7305 7332 nCoV-2019_25_LEFT 1 + GCAATTGTTTTTCAGCTATTTTGCAGT -MN908947.3 7671 7694 nCoV-2019_25_RIGHT 1 - ACTGTAGTGACAAGTCTCTCGCA -MN908947.3 7626 7651 nCoV-2019_26_LEFT 2 + TTGTGATACATTCTGTGCTGGTAGT -MN908947.3 7997 8019 nCoV-2019_26_RIGHT 2 - TCCGCACTATCACCAACATCAG -MN908947.3 7943 7968 nCoV-2019_27_LEFT 1 + ACTACAGTCAGCTTATGTGTCAACC -MN908947.3 8319 8341 nCoV-2019_27_RIGHT 1 - AATACAAGCACCAAGGTCACGG -MN908947.3 8249 8275 nCoV-2019_28_LEFT 2 + ACATAGAAGTTACTGGCGATAGTTGT -MN908947.3 8635 8661 nCoV-2019_28_RIGHT 2 - TGTTTAGACATGACATGAACAGGTGT -MN908947.3 8595 8619 nCoV-2019_29_LEFT 1 + ACTTGTGTTCCTTTTTGTTGCTGC -MN908947.3 8954 8983 nCoV-2019_29_RIGHT 1 - AGTGTACTCTATAAGTTTTGATGGTGTGT -MN908947.3 8888 8913 nCoV-2019_30_LEFT 2 + GCACAACTAATGGTGACTTTTTGCA -MN908947.3 9245 9271 nCoV-2019_30_RIGHT 2 - ACCACTAGTAGATACACAAACACCAG -MN908947.3 9204 9226 nCoV-2019_31_LEFT 1 + TTCTGAGTACTGTAGGCACGGC -MN908947.3 9557 9585 nCoV-2019_31_RIGHT 1 - ACAGAATAAACACCAGGTAAGAATGAGT -MN908947.3 9477 9502 nCoV-2019_32_LEFT 2 + TGGTGAATACAGTCATGTAGTTGCC -MN908947.3 9834 9858 nCoV-2019_32_RIGHT 2 - AGCACATCACTACGCAACTTTAGA -MN908947.3 9784 9806 nCoV-2019_33_LEFT 1 + ACTTTTGAAGAAGCTGCGCTGT -MN908947.3 10146 10171 nCoV-2019_33_RIGHT 1 - TGGACAGTAAACTACGTCATCAAGC -MN908947.3 10076 10099 nCoV-2019_34_LEFT 2 + TCCCATCTGGTAAAGTTGAGGGT -MN908947.3 10437 10459 nCoV-2019_34_RIGHT 2 - AGTGAAATTGGGCCTCATAGCA -MN908947.3 10362 10384 nCoV-2019_35_LEFT 1 + TGTTCGCATTCAACCAGGACAG -MN908947.3 10737 10763 nCoV-2019_35_RIGHT 1 - ACTTCATAGCCACAAGGTTAAAGTCA -MN908947.3 10666 10688 nCoV-2019_36_LEFT 2 + TTAGCTTGGTTGTACGCTGCTG -MN908947.3 11048 11074 nCoV-2019_36_RIGHT 2 - GAACAAAGACCATTGAGTACTCTGGA -MN908947.3 10999 11022 nCoV-2019_37_LEFT 1 + ACACACCACTGGTTGTTACTCAC -MN908947.3 11372 11394 nCoV-2019_37_RIGHT 1 - GTCCACACTCTCCTAGCACCAT -MN908947.3 11306 11331 nCoV-2019_38_LEFT 2 + ACTGTGTTATGTATGCATCAGCTGT -MN908947.3 11668 11693 nCoV-2019_38_RIGHT 2 - CACCAAGAGTCAGTCTAAAGTAGCG -MN908947.3 11555 11584 nCoV-2019_39_LEFT 1 + AGTATTGCCCTATTTTCTTCATAACTGGT -MN908947.3 11927 11949 nCoV-2019_39_RIGHT 1 - TGTAACTGGACACATTGAGCCC -MN908947.3 11863 11889 nCoV-2019_40_LEFT 2 + TGCACATCAGTAGTCTTACTCTCAGT -MN908947.3 12234 12256 nCoV-2019_40_RIGHT 2 - CATGGCTGCATCACGGTCAAAT -MN908947.3 12110 12133 nCoV-2019_41_LEFT 1 + GTTCCCTTCCATCATATGCAGCT -MN908947.3 12465 12490 nCoV-2019_41_RIGHT 1 - TGGTATGACAACCATTAGTTTGGCT -MN908947.3 12417 12439 nCoV-2019_42_LEFT 2 + TGCAAGAGATGGTTGTGTTCCC -MN908947.3 12779 12802 nCoV-2019_42_RIGHT 2 - CCTACCTCCCTTTGTTGTGTTGT -MN908947.3 12710 12732 nCoV-2019_43_LEFT 1 + TACGACAGATGTCTTGTGCTGC -MN908947.3 13074 13096 nCoV-2019_43_RIGHT 1 - AGCAGCATCTACAGCAAAAGCA -MN908947.3 13005 13027 nCoV-2019_44_LEFT 2 + TGCCACAGTACGTCTACAAGCT -MN908947.3 13378 13400 nCoV-2019_44_RIGHT 2 - AACCTTTCCACATACCGCAGAC -MN908947.3 13319 13344 nCoV-2019_45_LEFT 1 + TACCTACAACTTGTGCTAATGACCC -MN908947.3 13669 13699 nCoV-2019_45_RIGHT 1 - AAATTGTTTCTTCATGTTGGTAGTTAGAGA -MN908947.3 13599 13621 nCoV-2019_46_LEFT 2 + TGTCGCTTCCAAGAAAAGGACG -MN908947.3 13962 13984 nCoV-2019_46_RIGHT 2 - CACGTTCACCTAAGTTGGCGTA -MN908947.3 13918 13946 nCoV-2019_47_LEFT 1 + AGGACTGGTATGATTTTGTAGAAAACCC -MN908947.3 14271 14299 nCoV-2019_47_RIGHT 1 - AATAACGGTCAAAGAGTTTTAACCTCTC -MN908947.3 14207 14232 nCoV-2019_48_LEFT 2 + TGTTGACACTGACTTAACAAAGCCT -MN908947.3 14579 14601 nCoV-2019_48_RIGHT 2 - TAGATTACCAGAAGCAGCGTGC -MN908947.3 14545 14570 nCoV-2019_49_LEFT 1 + AGGAATTACTTGTGTATGCTGCTGA -MN908947.3 14898 14926 nCoV-2019_49_RIGHT 1 - TGACGATGACTTGGTTAGCATTAATACA -MN908947.3 14865 14895 nCoV-2019_50_LEFT 2 + GTTGATAAGTACTTTGATTGTTACGATGGT -MN908947.3 15224 15246 nCoV-2019_50_RIGHT 2 - TAACATGTTGTGCCAACCACCA -MN908947.3 15171 15193 nCoV-2019_51_LEFT 1 + TCAATAGCCGCCACTAGAGGAG -MN908947.3 15538 15560 nCoV-2019_51_RIGHT 1 - AGTGCATTAACATTGGCCGTGA -MN908947.3 15481 15503 nCoV-2019_52_LEFT 2 + CATCAGGAGATGCCACAACTGC -MN908947.3 15861 15886 nCoV-2019_52_RIGHT 2 - GTTGAGAGCAAAATTCATGAGGTCC -MN908947.3 15827 15851 nCoV-2019_53_LEFT 1 + AGCAAAATGTTGGACTGAGACTGA -MN908947.3 16186 16209 nCoV-2019_53_RIGHT 1 - AGCCTCATAAAACTCAGGTTCCC -MN908947.3 16118 16144 nCoV-2019_54_LEFT 2 + TGAGTTAACAGGACACATGTTAGACA -MN908947.3 16485 16510 nCoV-2019_54_RIGHT 2 - AACCAAAAACTTGTCCATTAGCACA -MN908947.3 16416 16444 nCoV-2019_55_LEFT 1 + ACTCAACTTTACTTAGGAGGTATGAGCT -MN908947.3 16804 16833 nCoV-2019_55_RIGHT 1 - GGTGTACTCTCCTATTTGTACTTTACTGT -MN908947.3 16748 16770 nCoV-2019_56_LEFT 2 + ACCTAGACCACCACTTAACCGA -MN908947.3 17130 17152 nCoV-2019_56_RIGHT 2 - ACACTATGCGAGCAGAAGGGTA -MN908947.3 17065 17087 nCoV-2019_57_LEFT 1 + ATTCTACACTCCAGGGACCACC -MN908947.3 17430 17452 nCoV-2019_57_RIGHT 1 - GTAATTGAGCAGGGTCGCCAAT -MN908947.3 17381 17406 nCoV-2019_58_LEFT 2 + TGATTTGAGTGTTGTCAATGCCAGA -MN908947.3 17738 17761 nCoV-2019_58_RIGHT 2 - CTTTTCTCCAAGCAGGGTTACGT -MN908947.3 17674 17697 nCoV-2019_59_LEFT 1 + TCACGCATGATGTTTCATCTGCA -MN908947.3 18036 18062 nCoV-2019_59_RIGHT 1 - AAGAGTCCTGTTACATTTTCAGCTTG -MN908947.3 17966 17993 nCoV-2019_60_LEFT 2 + TGATAGAGACCTTTATGACAAGTTGCA -MN908947.3 18324 18348 nCoV-2019_60_RIGHT 2 - GGTACCAACAGCTTCTCTAGTAGC -MN908947.3 18253 18275 nCoV-2019_61_LEFT 1 + TGTTTATCACCCGCGAAGAAGC -MN908947.3 18650 18672 nCoV-2019_61_RIGHT 1 - ATCACATAGACAACAGGTGCGC -MN908947.3 18596 18618 nCoV-2019_62_LEFT 2 + GGCACATGGCTTTGAGTTGACA -MN908947.3 18957 18979 nCoV-2019_62_RIGHT 2 - GTTGAACCTTTCTACAAGCCGC -MN908947.3 18896 18918 nCoV-2019_63_LEFT 1 + TGTTAAGCGTGTTGACTGGACT -MN908947.3 19275 19297 nCoV-2019_63_RIGHT 1 - ACAAACTGCCACCATCACAACC -MN908947.3 19204 19232 nCoV-2019_64_LEFT 2 + TCGATAGATATCCTGCTAATTCCATTGT -MN908947.3 19591 19616 nCoV-2019_64_RIGHT 2 - AGTCTTGTAAAAGTGTTCCAGAGGT -MN908947.3 19548 19570 nCoV-2019_65_LEFT 1 + GCTGGCTTTAGCTTGTGGGTTT -MN908947.3 19911 19939 nCoV-2019_65_RIGHT 1 - TGTCAGTCATAGAACAAACACCAATAGT -MN908947.3 19844 19866 nCoV-2019_66_LEFT 2 + GGGTGTGGACATTGCTGCTAAT -MN908947.3 20231 20255 nCoV-2019_66_RIGHT 2 - TCAATTTCCATTTGACTCCTGGGT -MN908947.3 20172 20200 nCoV-2019_67_LEFT 1 + GTTGTCCAACAATTACCTGAAACTTACT -MN908947.3 20542 20572 nCoV-2019_67_RIGHT 1 - CAACCTTAGAAACTACAGATAAATCTTGGG -MN908947.3 20472 20496 nCoV-2019_68_LEFT 2 + ACAGGTTCATCTAAGTGTGTGTGT -MN908947.3 20867 20890 nCoV-2019_68_RIGHT 2 - CTCCTTTATCAGAACCAGCACCA -MN908947.3 20786 20813 nCoV-2019_69_LEFT 1 + TGTCGCAAAATATACTCAACTGTGTCA -MN908947.3 21146 21169 nCoV-2019_69_RIGHT 1 - TCTTTATAGCCACGGAACCTCCA -MN908947.3 21075 21104 nCoV-2019_70_LEFT 2 + ACAAAAGAAAATGACTCTAAAGAGGGTTT -MN908947.3 21427 21455 nCoV-2019_70_RIGHT 2 - TGACCTTCTTTTAAAGACATAACAGCAG -MN908947.3 21357 21386 nCoV-2019_71_LEFT 1 + ACAAATCCAATTCAGTTGTCTTCCTATTC -MN908947.3 21716 21743 nCoV-2019_71_RIGHT 1 - TGGAAAAGAAAGGTAAGAACAAGTCCT -MN908947.3 21658 21682 nCoV-2019_72_LEFT 2 + ACACGTGGTGTTTATTACCCTGAC -MN908947.3 22013 22038 nCoV-2019_72_RIGHT 2 - ACTCTGAACTCACTTTCCATCCAAC -MN908947.3 21961 21990 nCoV-2019_73_LEFT 1 + CAATTTTGTAATGATCCATTTTTGGGTGT -MN908947.3 22324 22346 nCoV-2019_73_RIGHT 1 - CACCAGCTGTCCAACCTGAAGA -MN908947.3 22262 22290 nCoV-2019_74_LEFT 2 + ACATCACTAGGTTTCAAACTTTACTTGC -MN908947.3 22626 22650 nCoV-2019_74_RIGHT 2 - GCAACACAGTTGCTGATTCTCTTC -MN908947.3 22516 22542 nCoV-2019_75_LEFT 1 + AGAGTCCAACCAACAGAATCTATTGT -MN908947.3 22877 22903 nCoV-2019_75_RIGHT 1 - ACCACCAACCTTAGAATCAAGATTGT -MN908947.3 22797 22819 nCoV-2019_76_LEFT 2 + AGGGCAAACTGGAAAGATTGCT -MN908947.3 23192 23214 nCoV-2019_76_RIGHT 2 - ACACCTGTGCCTGTTAAACCAT -MN908947.3 23122 23144 nCoV-2019_77_LEFT 1 + CCAGCAACTGTTTGTGGACCTA -MN908947.3 23500 23522 nCoV-2019_77_RIGHT 1 - CAGCCCCTATTAAACAGCCTGC -MN908947.3 23443 23466 nCoV-2019_78_LEFT 2 + CAACTTACTCCTACTTGGCGTGT -MN908947.3 23822 23847 nCoV-2019_78_RIGHT 2 - TGTGTACAAAAACTGCCATATTGCA -MN908947.3 23789 23812 nCoV-2019_79_LEFT 1 + GTGGTGATTCAACTGAATGCAGC -MN908947.3 24145 24169 nCoV-2019_79_RIGHT 1 - CATTTCATCTGTGAGCAAAGGTGG -MN908947.3 24078 24100 nCoV-2019_80_LEFT 2 + TTGCCTTGGTGATATTGCTGCT -MN908947.3 24443 24467 nCoV-2019_80_RIGHT 2 - TGGAGCTAAGTTGTTTAACAAGCG -MN908947.3 24391 24416 nCoV-2019_81_LEFT 1 + GCACTTGGAAAACTTCAAGATGTGG -MN908947.3 24765 24789 nCoV-2019_81_RIGHT 1 - GTGAAGTTCTTTTCTTGTGCAGGG -MN908947.3 24696 24721 nCoV-2019_82_LEFT 2 + GGGCTATCATCTTATGTCCTTCCCT -MN908947.3 25052 25076 nCoV-2019_82_RIGHT 2 - TGCCAGAGATGTCACCTAAATCAA -MN908947.3 24978 25003 nCoV-2019_83_LEFT 1 + TCCTTTGCAACCTGAATTAGACTCA -MN908947.3 25347 25369 nCoV-2019_83_RIGHT 1 - TTTGACTCCTTTGAGCACTGGC -MN908947.3 25279 25301 nCoV-2019_84_LEFT 2 + TGCTGTAGTTGTCTCAAGGGCT -MN908947.3 25646 25673 nCoV-2019_84_RIGHT 2 - AGGTGTGAGTAAACTGTTACAAACAAC -MN908947.3 25601 25623 nCoV-2019_85_LEFT 1 + ACTAGCACTCTCCAAGGGTGTT -MN908947.3 25969 25994 nCoV-2019_85_RIGHT 1 - ACACAGTCTTTTACTCCAGATTCCC -MN908947.3 25902 25924 nCoV-2019_86_LEFT 2 + TCAGGTGATGGCACAACAAGTC -MN908947.3 26290 26315 nCoV-2019_86_RIGHT 2 - ACGAAAGCAAGAAAAAGAAGTACGC -MN908947.3 26197 26219 nCoV-2019_87_LEFT 1 + CGACTACTAGCGTGCCTTTGTA -MN908947.3 26566 26590 nCoV-2019_87_RIGHT 1 - ACTAGGTTCCATTGTTCAAGGAGC -MN908947.3 26520 26542 nCoV-2019_88_LEFT 2 + CCATGGCAGATTCCAACGGTAC -MN908947.3 26890 26913 nCoV-2019_88_RIGHT 2 - TGGTCAGAATAGTGCCATGGAGT -MN908947.3 26835 26857 nCoV-2019_89_LEFT 1 + GTACGCGTTCCATGTGGTCATT -MN908947.3 27202 27227 nCoV-2019_89_RIGHT 1 - ACCTGAAAGTCAACGAGATGAAACA -MN908947.3 27141 27164 nCoV-2019_90_LEFT 2 + ACACAGACCATTCCAGTAGCAGT -MN908947.3 27511 27533 nCoV-2019_90_RIGHT 2 - TGAAATGGTGAATTGCCCTCGT -MN908947.3 27446 27471 nCoV-2019_91_LEFT 1 + TCACTACCAAGAGTGTGTTAGAGGT -MN908947.3 27825 27854 nCoV-2019_91_RIGHT 1 - TTCAAGTGAGAACCAAAAGATAATAAGCA -MN908947.3 27784 27808 nCoV-2019_92_LEFT 2 + TTTGTGCTTTTTAGCCTTTCTGCT -MN908947.3 28145 28172 nCoV-2019_92_RIGHT 2 - AGGTTCCTGGCAATTAATTGTAAAAGG -MN908947.3 28081 28104 nCoV-2019_93_LEFT 1 + TGAGGCTGGTTCTAAATCACCCA -MN908947.3 28442 28464 nCoV-2019_93_RIGHT 1 - AGGTCTTCCTTGCCATGTTGAG -MN908947.3 28394 28416 nCoV-2019_94_LEFT 2 + GGCCCCAAGGTTTACCCAATAA -MN908947.3 28756 28779 nCoV-2019_94_RIGHT 2 - TTTGGCAATGTTGTTCCTTGAGG -MN908947.3 28677 28699 nCoV-2019_95_LEFT 1 + TGAGGGAGCCTTGAATACACCA -MN908947.3 29041 29063 nCoV-2019_95_RIGHT 1 - CAGTACGTTTTTGCCGAGGCTT -MN908947.3 28985 29007 nCoV-2019_96_LEFT 2 + GCCAACAACAACAAGGCCAAAC -MN908947.3 29356 29378 nCoV-2019_96_RIGHT 2 - TAGGCTCTGTTGGTGGGAATGT -MN908947.3 29288 29316 nCoV-2019_97_LEFT 1 + TGGATGACAAAGATCCAAATTTCAAAGA -MN908947.3 29665 29693 nCoV-2019_97_RIGHT 1 - ACACACTGATTAAAGATTGCTATGTGAG -MN908947.3 29486 29510 nCoV-2019_98_LEFT 2 + AACAATTGCAACAATCCATGAGCA -MN908947.3 29836 29866 nCoV-2019_98_RIGHT 2 - TTCTCCTAAGAAGCTATTAAAATCACATGG diff --git a/sars-cov-2/artic/v1/scheme.bed b/sars-cov-2/artic/v1/scheme.bed deleted file mode 100644 index 2a05af6..0000000 --- a/sars-cov-2/artic/v1/scheme.bed +++ /dev/null @@ -1,196 +0,0 @@ -MN908947.3 30 54 nCoV-2019_1_LEFT 1 + -MN908947.3 385 410 nCoV-2019_1_RIGHT 1 - -MN908947.3 320 342 nCoV-2019_2_LEFT 2 + -MN908947.3 704 726 nCoV-2019_2_RIGHT 2 - -MN908947.3 642 664 nCoV-2019_3_LEFT 1 + -MN908947.3 1004 1028 nCoV-2019_3_RIGHT 1 - -MN908947.3 943 965 nCoV-2019_4_LEFT 2 + -MN908947.3 1312 1337 nCoV-2019_4_RIGHT 2 - -MN908947.3 1242 1264 nCoV-2019_5_LEFT 1 + -MN908947.3 1623 1651 nCoV-2019_5_RIGHT 1 - -MN908947.3 1573 1595 nCoV-2019_6_LEFT 2 + -MN908947.3 1942 1964 nCoV-2019_6_RIGHT 2 - -MN908947.3 1875 1897 nCoV-2019_7_LEFT 1 + -MN908947.3 2247 2269 nCoV-2019_7_RIGHT 1 - -MN908947.3 2181 2205 nCoV-2019_8_LEFT 2 + -MN908947.3 2568 2592 nCoV-2019_8_RIGHT 2 - -MN908947.3 2505 2529 nCoV-2019_9_LEFT 1 + -MN908947.3 2882 2904 nCoV-2019_9_RIGHT 1 - -MN908947.3 2826 2850 nCoV-2019_10_LEFT 2 + -MN908947.3 3183 3210 nCoV-2019_10_RIGHT 2 - -MN908947.3 3144 3166 nCoV-2019_11_LEFT 1 + -MN908947.3 3507 3531 nCoV-2019_11_RIGHT 1 - -MN908947.3 3460 3482 nCoV-2019_12_LEFT 2 + -MN908947.3 3826 3853 nCoV-2019_12_RIGHT 2 - -MN908947.3 3771 3795 nCoV-2019_13_LEFT 1 + -MN908947.3 4142 4164 nCoV-2019_13_RIGHT 1 - -MN908947.3 4054 4077 nCoV-2019_14_LEFT 2 + -MN908947.3 4428 4450 nCoV-2019_14_RIGHT 2 - -MN908947.3 4294 4321 nCoV-2019_15_LEFT 1 + -MN908947.3 4674 4696 nCoV-2019_15_RIGHT 1 - -MN908947.3 4636 4658 nCoV-2019_16_LEFT 2 + -MN908947.3 4995 5017 nCoV-2019_16_RIGHT 2 - -MN908947.3 4939 4966 nCoV-2019_17_LEFT 1 + -MN908947.3 5296 5321 nCoV-2019_17_RIGHT 1 - -MN908947.3 5230 5259 nCoV-2019_18_LEFT 2 + -MN908947.3 5620 5644 nCoV-2019_18_RIGHT 2 - -MN908947.3 5563 5586 nCoV-2019_19_LEFT 1 + -MN908947.3 5932 5957 nCoV-2019_19_RIGHT 1 - -MN908947.3 5867 5894 nCoV-2019_20_LEFT 2 + -MN908947.3 6247 6272 nCoV-2019_20_RIGHT 2 - -MN908947.3 6167 6196 nCoV-2019_21_LEFT 1 + -MN908947.3 6528 6550 nCoV-2019_21_RIGHT 1 - -MN908947.3 6466 6495 nCoV-2019_22_LEFT 2 + -MN908947.3 6846 6873 nCoV-2019_22_RIGHT 2 - -MN908947.3 6718 6745 nCoV-2019_23_LEFT 1 + -MN908947.3 7092 7117 nCoV-2019_23_RIGHT 1 - -MN908947.3 7035 7058 nCoV-2019_24_LEFT 2 + -MN908947.3 7389 7415 nCoV-2019_24_RIGHT 2 - -MN908947.3 7305 7332 nCoV-2019_25_LEFT 1 + -MN908947.3 7671 7694 nCoV-2019_25_RIGHT 1 - -MN908947.3 7626 7651 nCoV-2019_26_LEFT 2 + -MN908947.3 7997 8019 nCoV-2019_26_RIGHT 2 - -MN908947.3 7943 7968 nCoV-2019_27_LEFT 1 + -MN908947.3 8319 8341 nCoV-2019_27_RIGHT 1 - -MN908947.3 8249 8275 nCoV-2019_28_LEFT 2 + -MN908947.3 8635 8661 nCoV-2019_28_RIGHT 2 - -MN908947.3 8595 8619 nCoV-2019_29_LEFT 1 + -MN908947.3 8954 8983 nCoV-2019_29_RIGHT 1 - -MN908947.3 8888 8913 nCoV-2019_30_LEFT 2 + -MN908947.3 9245 9271 nCoV-2019_30_RIGHT 2 - -MN908947.3 9204 9226 nCoV-2019_31_LEFT 1 + -MN908947.3 9557 9585 nCoV-2019_31_RIGHT 1 - -MN908947.3 9477 9502 nCoV-2019_32_LEFT 2 + -MN908947.3 9834 9858 nCoV-2019_32_RIGHT 2 - -MN908947.3 9784 9806 nCoV-2019_33_LEFT 1 + -MN908947.3 10146 10171 nCoV-2019_33_RIGHT 1 - -MN908947.3 10076 10099 nCoV-2019_34_LEFT 2 + -MN908947.3 10437 10459 nCoV-2019_34_RIGHT 2 - -MN908947.3 10362 10384 nCoV-2019_35_LEFT 1 + -MN908947.3 10737 10763 nCoV-2019_35_RIGHT 1 - -MN908947.3 10666 10688 nCoV-2019_36_LEFT 2 + -MN908947.3 11048 11074 nCoV-2019_36_RIGHT 2 - -MN908947.3 10999 11022 nCoV-2019_37_LEFT 1 + -MN908947.3 11372 11394 nCoV-2019_37_RIGHT 1 - -MN908947.3 11306 11331 nCoV-2019_38_LEFT 2 + -MN908947.3 11668 11693 nCoV-2019_38_RIGHT 2 - -MN908947.3 11555 11584 nCoV-2019_39_LEFT 1 + -MN908947.3 11927 11949 nCoV-2019_39_RIGHT 1 - -MN908947.3 11863 11889 nCoV-2019_40_LEFT 2 + -MN908947.3 12234 12256 nCoV-2019_40_RIGHT 2 - -MN908947.3 12110 12133 nCoV-2019_41_LEFT 1 + -MN908947.3 12465 12490 nCoV-2019_41_RIGHT 1 - -MN908947.3 12417 12439 nCoV-2019_42_LEFT 2 + -MN908947.3 12779 12802 nCoV-2019_42_RIGHT 2 - -MN908947.3 12710 12732 nCoV-2019_43_LEFT 1 + -MN908947.3 13074 13096 nCoV-2019_43_RIGHT 1 - -MN908947.3 13005 13027 nCoV-2019_44_LEFT 2 + -MN908947.3 13378 13400 nCoV-2019_44_RIGHT 2 - -MN908947.3 13319 13344 nCoV-2019_45_LEFT 1 + -MN908947.3 13669 13699 nCoV-2019_45_RIGHT 1 - -MN908947.3 13599 13621 nCoV-2019_46_LEFT 2 + -MN908947.3 13962 13984 nCoV-2019_46_RIGHT 2 - -MN908947.3 13918 13946 nCoV-2019_47_LEFT 1 + -MN908947.3 14271 14299 nCoV-2019_47_RIGHT 1 - -MN908947.3 14207 14232 nCoV-2019_48_LEFT 2 + -MN908947.3 14579 14601 nCoV-2019_48_RIGHT 2 - -MN908947.3 14545 14570 nCoV-2019_49_LEFT 1 + -MN908947.3 14898 14926 nCoV-2019_49_RIGHT 1 - -MN908947.3 14865 14895 nCoV-2019_50_LEFT 2 + -MN908947.3 15224 15246 nCoV-2019_50_RIGHT 2 - -MN908947.3 15171 15193 nCoV-2019_51_LEFT 1 + -MN908947.3 15538 15560 nCoV-2019_51_RIGHT 1 - -MN908947.3 15481 15503 nCoV-2019_52_LEFT 2 + -MN908947.3 15861 15886 nCoV-2019_52_RIGHT 2 - -MN908947.3 15827 15851 nCoV-2019_53_LEFT 1 + -MN908947.3 16186 16209 nCoV-2019_53_RIGHT 1 - -MN908947.3 16118 16144 nCoV-2019_54_LEFT 2 + -MN908947.3 16485 16510 nCoV-2019_54_RIGHT 2 - -MN908947.3 16416 16444 nCoV-2019_55_LEFT 1 + -MN908947.3 16804 16833 nCoV-2019_55_RIGHT 1 - -MN908947.3 16748 16770 nCoV-2019_56_LEFT 2 + -MN908947.3 17130 17152 nCoV-2019_56_RIGHT 2 - -MN908947.3 17065 17087 nCoV-2019_57_LEFT 1 + -MN908947.3 17430 17452 nCoV-2019_57_RIGHT 1 - -MN908947.3 17381 17406 nCoV-2019_58_LEFT 2 + -MN908947.3 17738 17761 nCoV-2019_58_RIGHT 2 - -MN908947.3 17674 17697 nCoV-2019_59_LEFT 1 + -MN908947.3 18036 18062 nCoV-2019_59_RIGHT 1 - -MN908947.3 17966 17993 nCoV-2019_60_LEFT 2 + -MN908947.3 18324 18348 nCoV-2019_60_RIGHT 2 - -MN908947.3 18253 18275 nCoV-2019_61_LEFT 1 + -MN908947.3 18650 18672 nCoV-2019_61_RIGHT 1 - -MN908947.3 18596 18618 nCoV-2019_62_LEFT 2 + -MN908947.3 18957 18979 nCoV-2019_62_RIGHT 2 - -MN908947.3 18896 18918 nCoV-2019_63_LEFT 1 + -MN908947.3 19275 19297 nCoV-2019_63_RIGHT 1 - -MN908947.3 19204 19232 nCoV-2019_64_LEFT 2 + -MN908947.3 19591 19616 nCoV-2019_64_RIGHT 2 - -MN908947.3 19548 19570 nCoV-2019_65_LEFT 1 + -MN908947.3 19911 19939 nCoV-2019_65_RIGHT 1 - -MN908947.3 19844 19866 nCoV-2019_66_LEFT 2 + -MN908947.3 20231 20255 nCoV-2019_66_RIGHT 2 - -MN908947.3 20172 20200 nCoV-2019_67_LEFT 1 + -MN908947.3 20542 20572 nCoV-2019_67_RIGHT 1 - -MN908947.3 20472 20496 nCoV-2019_68_LEFT 2 + -MN908947.3 20867 20890 nCoV-2019_68_RIGHT 2 - -MN908947.3 20786 20813 nCoV-2019_69_LEFT 1 + -MN908947.3 21146 21169 nCoV-2019_69_RIGHT 1 - -MN908947.3 21075 21104 nCoV-2019_70_LEFT 2 + -MN908947.3 21427 21455 nCoV-2019_70_RIGHT 2 - -MN908947.3 21357 21386 nCoV-2019_71_LEFT 1 + -MN908947.3 21716 21743 nCoV-2019_71_RIGHT 1 - -MN908947.3 21658 21682 nCoV-2019_72_LEFT 2 + -MN908947.3 22013 22038 nCoV-2019_72_RIGHT 2 - -MN908947.3 21961 21990 nCoV-2019_73_LEFT 1 + -MN908947.3 22324 22346 nCoV-2019_73_RIGHT 1 - -MN908947.3 22262 22290 nCoV-2019_74_LEFT 2 + -MN908947.3 22626 22650 nCoV-2019_74_RIGHT 2 - -MN908947.3 22516 22542 nCoV-2019_75_LEFT 1 + -MN908947.3 22877 22903 nCoV-2019_75_RIGHT 1 - -MN908947.3 22797 22819 nCoV-2019_76_LEFT 2 + -MN908947.3 23192 23214 nCoV-2019_76_RIGHT 2 - -MN908947.3 23122 23144 nCoV-2019_77_LEFT 1 + -MN908947.3 23500 23522 nCoV-2019_77_RIGHT 1 - -MN908947.3 23443 23466 nCoV-2019_78_LEFT 2 + -MN908947.3 23822 23847 nCoV-2019_78_RIGHT 2 - -MN908947.3 23789 23812 nCoV-2019_79_LEFT 1 + -MN908947.3 24145 24169 nCoV-2019_79_RIGHT 1 - -MN908947.3 24078 24100 nCoV-2019_80_LEFT 2 + -MN908947.3 24443 24467 nCoV-2019_80_RIGHT 2 - -MN908947.3 24391 24416 nCoV-2019_81_LEFT 1 + -MN908947.3 24765 24789 nCoV-2019_81_RIGHT 1 - -MN908947.3 24696 24721 nCoV-2019_82_LEFT 2 + -MN908947.3 25052 25076 nCoV-2019_82_RIGHT 2 - -MN908947.3 24978 25003 nCoV-2019_83_LEFT 1 + -MN908947.3 25347 25369 nCoV-2019_83_RIGHT 1 - -MN908947.3 25279 25301 nCoV-2019_84_LEFT 2 + -MN908947.3 25646 25673 nCoV-2019_84_RIGHT 2 - -MN908947.3 25601 25623 nCoV-2019_85_LEFT 1 + -MN908947.3 25969 25994 nCoV-2019_85_RIGHT 1 - -MN908947.3 25902 25924 nCoV-2019_86_LEFT 2 + -MN908947.3 26290 26315 nCoV-2019_86_RIGHT 2 - -MN908947.3 26197 26219 nCoV-2019_87_LEFT 1 + -MN908947.3 26566 26590 nCoV-2019_87_RIGHT 1 - -MN908947.3 26520 26542 nCoV-2019_88_LEFT 2 + -MN908947.3 26890 26913 nCoV-2019_88_RIGHT 2 - -MN908947.3 26835 26857 nCoV-2019_89_LEFT 1 + -MN908947.3 27202 27227 nCoV-2019_89_RIGHT 1 - -MN908947.3 27141 27164 nCoV-2019_90_LEFT 2 + -MN908947.3 27511 27533 nCoV-2019_90_RIGHT 2 - -MN908947.3 27446 27471 nCoV-2019_91_LEFT 1 + -MN908947.3 27825 27854 nCoV-2019_91_RIGHT 1 - -MN908947.3 27784 27808 nCoV-2019_92_LEFT 2 + -MN908947.3 28145 28172 nCoV-2019_92_RIGHT 2 - -MN908947.3 28081 28104 nCoV-2019_93_LEFT 1 + -MN908947.3 28442 28464 nCoV-2019_93_RIGHT 1 - -MN908947.3 28394 28416 nCoV-2019_94_LEFT 2 + -MN908947.3 28756 28779 nCoV-2019_94_RIGHT 2 - -MN908947.3 28677 28699 nCoV-2019_95_LEFT 1 + -MN908947.3 29041 29063 nCoV-2019_95_RIGHT 1 - -MN908947.3 28985 29007 nCoV-2019_96_LEFT 2 + -MN908947.3 29356 29378 nCoV-2019_96_RIGHT 2 - -MN908947.3 29288 29316 nCoV-2019_97_LEFT 1 + -MN908947.3 29665 29693 nCoV-2019_97_RIGHT 1 - -MN908947.3 29486 29510 nCoV-2019_98_LEFT 2 + -MN908947.3 29836 29866 nCoV-2019_98_RIGHT 2 - diff --git a/sars-cov-2/artic/v2/info.yml b/sars-cov-2/artic/v2/info.yml deleted file mode 100644 index 26c8f9a..0000000 --- a/sars-cov-2/artic/v2/info.yml +++ /dev/null @@ -1,16 +0,0 @@ -schema_version: 0.9.0 -name: artic-v2 -organism: sars-cov-2 -aliases: -- ARTIC/V4 -developers: -- organisation_name: ARTIC network - home_page: https://artic.network/ -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v2 -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -derived_from: artic-v1 -primer_scheme_status: DEPRECATED -primer_checksum: primaschema:6b9e64d0968d826c -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/artic/v2/primer.bed b/sars-cov-2/artic/v2/primer.bed deleted file mode 100644 index 1480592..0000000 --- a/sars-cov-2/artic/v2/primer.bed +++ /dev/null @@ -1,196 +0,0 @@ -MN908947.3 30 54 nCoV-2019_1_LEFT 1 + ACCAACCAACTTTCGATCTCTTGT -MN908947.3 385 410 nCoV-2019_1_RIGHT 1 - CATCTTTAAGATGTTGACGTGCCTC -MN908947.3 320 342 nCoV-2019_2_LEFT 2 + CTGTTTTACAGGTTCGCGACGT -MN908947.3 704 726 nCoV-2019_2_RIGHT 2 - TAAGGATCAGTGCCAAGCTCGT -MN908947.3 642 664 nCoV-2019_3_LEFT 1 + CGGTAATAAAGGAGCTGGTGGC -MN908947.3 1004 1028 nCoV-2019_3_RIGHT 1 - AAGGTGTCTGCAATTCATAGCTCT -MN908947.3 943 965 nCoV-2019_4_LEFT 2 + GGTGTATACTGCTGCCGTGAAC -MN908947.3 1312 1337 nCoV-2019_4_RIGHT 2 - CACAAGTAGTGGCACCTTCTTTAGT -MN908947.3 1242 1264 nCoV-2019_5_LEFT 1 + TGGTGAAACTTCATGGCAGACG -MN908947.3 1623 1651 nCoV-2019_5_RIGHT 1 - ATTGATGTTGACTTTCTCTTTTTGGAGT -MN908947.3 1573 1595 nCoV-2019_6_LEFT 2 + GGTGTTGTTGGAGAAGGTTCCG -MN908947.3 1942 1964 nCoV-2019_6_RIGHT 2 - TAGCGGCCTTCTGTAAAACACG -MN908947.3 1875 1897 nCoV-2019_7_LEFT 1 + ATCAGAGGCTGCTCGTGTTGTA -MN908947.3 2247 2269 nCoV-2019_7_RIGHT 1 - TGCACAGGTGACAATTTGTCCA -MN908947.3 2181 2205 nCoV-2019_8_LEFT 2 + AGAGTTTCTTAGAGACGGTTGGGA -MN908947.3 2568 2592 nCoV-2019_8_RIGHT 2 - GCTTCAACAGCTTCACTAGTAGGT -MN908947.3 2505 2529 nCoV-2019_9_LEFT 1 + TCCCACAGAAGTGTTAACAGAGGA -MN908947.3 2882 2904 nCoV-2019_9_RIGHT 1 - ATGACAGCATCTGCCACAACAC -MN908947.3 2826 2850 nCoV-2019_10_LEFT 2 + TGAGAAGTGCTCTGCCTATACAGT -MN908947.3 3183 3210 nCoV-2019_10_RIGHT 2 - TCATCTAACCAATCTTCTTCTTGCTCT -MN908947.3 3144 3166 nCoV-2019_11_LEFT 1 + GGAATTTGGTGCCACTTCTGCT -MN908947.3 3507 3531 nCoV-2019_11_RIGHT 1 - TCATCAGATTCAACTTGCATGGCA -MN908947.3 3460 3482 nCoV-2019_12_LEFT 2 + AAACATGGAGGAGGTGTTGCAG -MN908947.3 3826 3853 nCoV-2019_12_RIGHT 2 - TTCACTCTTCATTTCCAAAAAGCTTGA -MN908947.3 3771 3795 nCoV-2019_13_LEFT 1 + TCGCACAAATGTCTACTTAGCTGT -MN908947.3 4142 4164 nCoV-2019_13_RIGHT 1 - ACCACAGCAGTTAAAACACCCT -MN908947.3 4054 4077 nCoV-2019_14_LEFT 2 + CATCCAGATTCTGCCACTCTTGT -MN908947.3 4428 4450 nCoV-2019_14_RIGHT 2 - AGTTTCCACACAGACAGGCATT -MN908947.3 4294 4321 nCoV-2019_15_LEFT 1 + ACAGTGCTTAAAAAGTGTAAAAGTGCC -MN908947.3 4674 4696 nCoV-2019_15_RIGHT 1 - AACAGAAACTGTAGCTGGCACT -MN908947.3 4636 4658 nCoV-2019_16_LEFT 2 + AATTTGGAAGAAGCTGCTCGGT -MN908947.3 4995 5017 nCoV-2019_16_RIGHT 2 - CACAACTTGCGTGTGGAGGTTA -MN908947.3 4939 4966 nCoV-2019_17_LEFT 1 + CTTCTTTCTTTGAGAGAAGTGAGGACT -MN908947.3 5296 5321 nCoV-2019_17_RIGHT 1 - TTTGTTGGAGTGTTAACAATGCAGT -MN908947.3 5257 5287 nCoV-2019_18_LEFT_alt2 2 + ACTTCTATTAAATGGGCAGATAACAACTGT -MN908947.3 5620 5644 nCoV-2019_18_RIGHT 2 - AGCTTGTTTACCACACGTACAAGG -MN908947.3 5563 5586 nCoV-2019_19_LEFT 1 + GCTGTTATGTACATGGGCACACT -MN908947.3 5932 5957 nCoV-2019_19_RIGHT 1 - TGTCCAACTTAGGGTCAATTTCTGT -MN908947.3 5867 5894 nCoV-2019_20_LEFT 2 + ACAAAGAAAACAGTTACACAACAACCA -MN908947.3 6247 6272 nCoV-2019_20_RIGHT 2 - ACGTGGCTTTATTAGTTGCATTGTT -MN908947.3 6167 6196 nCoV-2019_21_LEFT 1 + TGGCTATTGATTATAAACACTACACACCC -MN908947.3 6528 6550 nCoV-2019_21_RIGHT 1 - TAGATCTGTGTGGCCAACCTCT -MN908947.3 6466 6495 nCoV-2019_22_LEFT 2 + ACTACCGAAGTTGTAGGAGACATTATACT -MN908947.3 6846 6873 nCoV-2019_22_RIGHT 2 - ACAGTATTCTTTGCTATAGTAGTCGGC -MN908947.3 6718 6745 nCoV-2019_23_LEFT 1 + ACAACTACTAACATAGTTACACGGTGT -MN908947.3 7092 7117 nCoV-2019_23_RIGHT 1 - ACCAGTACAGTAGGTTGCAATAGTG -MN908947.3 7035 7058 nCoV-2019_24_LEFT 2 + AGGCATGCCTTCTTACTGTACTG -MN908947.3 7389 7415 nCoV-2019_24_RIGHT 2 - ACATTCTAACCATAGCTGAAATCGGG -MN908947.3 7305 7332 nCoV-2019_25_LEFT 1 + GCAATTGTTTTTCAGCTATTTTGCAGT -MN908947.3 7671 7694 nCoV-2019_25_RIGHT 1 - ACTGTAGTGACAAGTCTCTCGCA -MN908947.3 7626 7651 nCoV-2019_26_LEFT 2 + TTGTGATACATTCTGTGCTGGTAGT -MN908947.3 7997 8019 nCoV-2019_26_RIGHT 2 - TCCGCACTATCACCAACATCAG -MN908947.3 7943 7968 nCoV-2019_27_LEFT 1 + ACTACAGTCAGCTTATGTGTCAACC -MN908947.3 8319 8341 nCoV-2019_27_RIGHT 1 - AATACAAGCACCAAGGTCACGG -MN908947.3 8249 8275 nCoV-2019_28_LEFT 2 + ACATAGAAGTTACTGGCGATAGTTGT -MN908947.3 8635 8661 nCoV-2019_28_RIGHT 2 - TGTTTAGACATGACATGAACAGGTGT -MN908947.3 8595 8619 nCoV-2019_29_LEFT 1 + ACTTGTGTTCCTTTTTGTTGCTGC -MN908947.3 8954 8983 nCoV-2019_29_RIGHT 1 - AGTGTACTCTATAAGTTTTGATGGTGTGT -MN908947.3 8888 8913 nCoV-2019_30_LEFT 2 + GCACAACTAATGGTGACTTTTTGCA -MN908947.3 9245 9271 nCoV-2019_30_RIGHT 2 - ACCACTAGTAGATACACAAACACCAG -MN908947.3 9204 9226 nCoV-2019_31_LEFT 1 + TTCTGAGTACTGTAGGCACGGC -MN908947.3 9557 9585 nCoV-2019_31_RIGHT 1 - ACAGAATAAACACCAGGTAAGAATGAGT -MN908947.3 9477 9502 nCoV-2019_32_LEFT 2 + TGGTGAATACAGTCATGTAGTTGCC -MN908947.3 9834 9858 nCoV-2019_32_RIGHT 2 - AGCACATCACTACGCAACTTTAGA -MN908947.3 9784 9806 nCoV-2019_33_LEFT 1 + ACTTTTGAAGAAGCTGCGCTGT -MN908947.3 10146 10171 nCoV-2019_33_RIGHT 1 - TGGACAGTAAACTACGTCATCAAGC -MN908947.3 10076 10099 nCoV-2019_34_LEFT 2 + TCCCATCTGGTAAAGTTGAGGGT -MN908947.3 10437 10459 nCoV-2019_34_RIGHT 2 - AGTGAAATTGGGCCTCATAGCA -MN908947.3 10362 10384 nCoV-2019_35_LEFT 1 + TGTTCGCATTCAACCAGGACAG -MN908947.3 10737 10763 nCoV-2019_35_RIGHT 1 - ACTTCATAGCCACAAGGTTAAAGTCA -MN908947.3 10666 10688 nCoV-2019_36_LEFT 2 + TTAGCTTGGTTGTACGCTGCTG -MN908947.3 11048 11074 nCoV-2019_36_RIGHT 2 - GAACAAAGACCATTGAGTACTCTGGA -MN908947.3 10999 11022 nCoV-2019_37_LEFT 1 + ACACACCACTGGTTGTTACTCAC -MN908947.3 11372 11394 nCoV-2019_37_RIGHT 1 - GTCCACACTCTCCTAGCACCAT -MN908947.3 11306 11331 nCoV-2019_38_LEFT 2 + ACTGTGTTATGTATGCATCAGCTGT -MN908947.3 11668 11693 nCoV-2019_38_RIGHT 2 - CACCAAGAGTCAGTCTAAAGTAGCG -MN908947.3 11555 11584 nCoV-2019_39_LEFT 1 + AGTATTGCCCTATTTTCTTCATAACTGGT -MN908947.3 11927 11949 nCoV-2019_39_RIGHT 1 - TGTAACTGGACACATTGAGCCC -MN908947.3 11863 11889 nCoV-2019_40_LEFT 2 + TGCACATCAGTAGTCTTACTCTCAGT -MN908947.3 12234 12256 nCoV-2019_40_RIGHT 2 - CATGGCTGCATCACGGTCAAAT -MN908947.3 12110 12133 nCoV-2019_41_LEFT 1 + GTTCCCTTCCATCATATGCAGCT -MN908947.3 12465 12490 nCoV-2019_41_RIGHT 1 - TGGTATGACAACCATTAGTTTGGCT -MN908947.3 12417 12439 nCoV-2019_42_LEFT 2 + TGCAAGAGATGGTTGTGTTCCC -MN908947.3 12779 12802 nCoV-2019_42_RIGHT 2 - CCTACCTCCCTTTGTTGTGTTGT -MN908947.3 12710 12732 nCoV-2019_43_LEFT 1 + TACGACAGATGTCTTGTGCTGC -MN908947.3 13074 13096 nCoV-2019_43_RIGHT 1 - AGCAGCATCTACAGCAAAAGCA -MN908947.3 13005 13027 nCoV-2019_44_LEFT 2 + TGCCACAGTACGTCTACAAGCT -MN908947.3 13378 13400 nCoV-2019_44_RIGHT 2 - AACCTTTCCACATACCGCAGAC -MN908947.3 13319 13344 nCoV-2019_45_LEFT 1 + TACCTACAACTTGTGCTAATGACCC -MN908947.3 13669 13699 nCoV-2019_45_RIGHT 1 - AAATTGTTTCTTCATGTTGGTAGTTAGAGA -MN908947.3 13599 13621 nCoV-2019_46_LEFT 2 + TGTCGCTTCCAAGAAAAGGACG -MN908947.3 13962 13984 nCoV-2019_46_RIGHT 2 - CACGTTCACCTAAGTTGGCGTA -MN908947.3 13918 13946 nCoV-2019_47_LEFT 1 + AGGACTGGTATGATTTTGTAGAAAACCC -MN908947.3 14271 14299 nCoV-2019_47_RIGHT 1 - AATAACGGTCAAAGAGTTTTAACCTCTC -MN908947.3 14207 14232 nCoV-2019_48_LEFT 2 + TGTTGACACTGACTTAACAAAGCCT -MN908947.3 14579 14601 nCoV-2019_48_RIGHT 2 - TAGATTACCAGAAGCAGCGTGC -MN908947.3 14545 14570 nCoV-2019_49_LEFT 1 + AGGAATTACTTGTGTATGCTGCTGA -MN908947.3 14898 14926 nCoV-2019_49_RIGHT 1 - TGACGATGACTTGGTTAGCATTAATACA -MN908947.3 14865 14895 nCoV-2019_50_LEFT 2 + GTTGATAAGTACTTTGATTGTTACGATGGT -MN908947.3 15224 15246 nCoV-2019_50_RIGHT 2 - TAACATGTTGTGCCAACCACCA -MN908947.3 15171 15193 nCoV-2019_51_LEFT 1 + TCAATAGCCGCCACTAGAGGAG -MN908947.3 15538 15560 nCoV-2019_51_RIGHT 1 - AGTGCATTAACATTGGCCGTGA -MN908947.3 15481 15503 nCoV-2019_52_LEFT 2 + CATCAGGAGATGCCACAACTGC -MN908947.3 15861 15886 nCoV-2019_52_RIGHT 2 - GTTGAGAGCAAAATTCATGAGGTCC -MN908947.3 15827 15851 nCoV-2019_53_LEFT 1 + AGCAAAATGTTGGACTGAGACTGA -MN908947.3 16186 16209 nCoV-2019_53_RIGHT 1 - AGCCTCATAAAACTCAGGTTCCC -MN908947.3 16118 16144 nCoV-2019_54_LEFT 2 + TGAGTTAACAGGACACATGTTAGACA -MN908947.3 16485 16510 nCoV-2019_54_RIGHT 2 - AACCAAAAACTTGTCCATTAGCACA -MN908947.3 16416 16444 nCoV-2019_55_LEFT 1 + ACTCAACTTTACTTAGGAGGTATGAGCT -MN908947.3 16804 16833 nCoV-2019_55_RIGHT 1 - GGTGTACTCTCCTATTTGTACTTTACTGT -MN908947.3 16748 16770 nCoV-2019_56_LEFT 2 + ACCTAGACCACCACTTAACCGA -MN908947.3 17130 17152 nCoV-2019_56_RIGHT 2 - ACACTATGCGAGCAGAAGGGTA -MN908947.3 17065 17087 nCoV-2019_57_LEFT 1 + ATTCTACACTCCAGGGACCACC -MN908947.3 17430 17452 nCoV-2019_57_RIGHT 1 - GTAATTGAGCAGGGTCGCCAAT -MN908947.3 17381 17406 nCoV-2019_58_LEFT 2 + TGATTTGAGTGTTGTCAATGCCAGA -MN908947.3 17738 17761 nCoV-2019_58_RIGHT 2 - CTTTTCTCCAAGCAGGGTTACGT -MN908947.3 17674 17697 nCoV-2019_59_LEFT 1 + TCACGCATGATGTTTCATCTGCA -MN908947.3 18036 18062 nCoV-2019_59_RIGHT 1 - AAGAGTCCTGTTACATTTTCAGCTTG -MN908947.3 17966 17993 nCoV-2019_60_LEFT 2 + TGATAGAGACCTTTATGACAAGTTGCA -MN908947.3 18324 18348 nCoV-2019_60_RIGHT 2 - GGTACCAACAGCTTCTCTAGTAGC -MN908947.3 18253 18275 nCoV-2019_61_LEFT 1 + TGTTTATCACCCGCGAAGAAGC -MN908947.3 18650 18672 nCoV-2019_61_RIGHT 1 - ATCACATAGACAACAGGTGCGC -MN908947.3 18596 18618 nCoV-2019_62_LEFT 2 + GGCACATGGCTTTGAGTTGACA -MN908947.3 18957 18979 nCoV-2019_62_RIGHT 2 - GTTGAACCTTTCTACAAGCCGC -MN908947.3 18896 18918 nCoV-2019_63_LEFT 1 + TGTTAAGCGTGTTGACTGGACT -MN908947.3 19275 19297 nCoV-2019_63_RIGHT 1 - ACAAACTGCCACCATCACAACC -MN908947.3 19204 19232 nCoV-2019_64_LEFT 2 + TCGATAGATATCCTGCTAATTCCATTGT -MN908947.3 19591 19616 nCoV-2019_64_RIGHT 2 - AGTCTTGTAAAAGTGTTCCAGAGGT -MN908947.3 19548 19570 nCoV-2019_65_LEFT 1 + GCTGGCTTTAGCTTGTGGGTTT -MN908947.3 19911 19939 nCoV-2019_65_RIGHT 1 - TGTCAGTCATAGAACAAACACCAATAGT -MN908947.3 19844 19866 nCoV-2019_66_LEFT 2 + GGGTGTGGACATTGCTGCTAAT -MN908947.3 20231 20255 nCoV-2019_66_RIGHT 2 - TCAATTTCCATTTGACTCCTGGGT -MN908947.3 20172 20200 nCoV-2019_67_LEFT 1 + GTTGTCCAACAATTACCTGAAACTTACT -MN908947.3 20542 20572 nCoV-2019_67_RIGHT 1 - CAACCTTAGAAACTACAGATAAATCTTGGG -MN908947.3 20472 20496 nCoV-2019_68_LEFT 2 + ACAGGTTCATCTAAGTGTGTGTGT -MN908947.3 20867 20890 nCoV-2019_68_RIGHT 2 - CTCCTTTATCAGAACCAGCACCA -MN908947.3 20786 20813 nCoV-2019_69_LEFT 1 + TGTCGCAAAATATACTCAACTGTGTCA -MN908947.3 21146 21169 nCoV-2019_69_RIGHT 1 - TCTTTATAGCCACGGAACCTCCA -MN908947.3 21075 21104 nCoV-2019_70_LEFT 2 + ACAAAAGAAAATGACTCTAAAGAGGGTTT -MN908947.3 21427 21455 nCoV-2019_70_RIGHT 2 - TGACCTTCTTTTAAAGACATAACAGCAG -MN908947.3 21357 21386 nCoV-2019_71_LEFT 1 + ACAAATCCAATTCAGTTGTCTTCCTATTC -MN908947.3 21716 21743 nCoV-2019_71_RIGHT 1 - TGGAAAAGAAAGGTAAGAACAAGTCCT -MN908947.3 21658 21682 nCoV-2019_72_LEFT 2 + ACACGTGGTGTTTATTACCCTGAC -MN908947.3 22013 22038 nCoV-2019_72_RIGHT 2 - ACTCTGAACTCACTTTCCATCCAAC -MN908947.3 21961 21990 nCoV-2019_73_LEFT 1 + CAATTTTGTAATGATCCATTTTTGGGTGT -MN908947.3 22324 22346 nCoV-2019_73_RIGHT 1 - CACCAGCTGTCCAACCTGAAGA -MN908947.3 22262 22290 nCoV-2019_74_LEFT 2 + ACATCACTAGGTTTCAAACTTTACTTGC -MN908947.3 22626 22650 nCoV-2019_74_RIGHT 2 - GCAACACAGTTGCTGATTCTCTTC -MN908947.3 22516 22542 nCoV-2019_75_LEFT 1 + AGAGTCCAACCAACAGAATCTATTGT -MN908947.3 22877 22903 nCoV-2019_75_RIGHT 1 - ACCACCAACCTTAGAATCAAGATTGT -MN908947.3 22797 22819 nCoV-2019_76_LEFT 2 + AGGGCAAACTGGAAAGATTGCT -MN908947.3 23192 23214 nCoV-2019_76_RIGHT 2 - ACACCTGTGCCTGTTAAACCAT -MN908947.3 23122 23144 nCoV-2019_77_LEFT 1 + CCAGCAACTGTTTGTGGACCTA -MN908947.3 23500 23522 nCoV-2019_77_RIGHT 1 - CAGCCCCTATTAAACAGCCTGC -MN908947.3 23443 23466 nCoV-2019_78_LEFT 2 + CAACTTACTCCTACTTGGCGTGT -MN908947.3 23822 23847 nCoV-2019_78_RIGHT 2 - TGTGTACAAAAACTGCCATATTGCA -MN908947.3 23789 23812 nCoV-2019_79_LEFT 1 + GTGGTGATTCAACTGAATGCAGC -MN908947.3 24145 24169 nCoV-2019_79_RIGHT 1 - CATTTCATCTGTGAGCAAAGGTGG -MN908947.3 24078 24100 nCoV-2019_80_LEFT 2 + TTGCCTTGGTGATATTGCTGCT -MN908947.3 24443 24467 nCoV-2019_80_RIGHT 2 - TGGAGCTAAGTTGTTTAACAAGCG -MN908947.3 24391 24416 nCoV-2019_81_LEFT 1 + GCACTTGGAAAACTTCAAGATGTGG -MN908947.3 24765 24789 nCoV-2019_81_RIGHT 1 - GTGAAGTTCTTTTCTTGTGCAGGG -MN908947.3 24696 24721 nCoV-2019_82_LEFT 2 + GGGCTATCATCTTATGTCCTTCCCT -MN908947.3 25052 25076 nCoV-2019_82_RIGHT 2 - TGCCAGAGATGTCACCTAAATCAA -MN908947.3 24978 25003 nCoV-2019_83_LEFT 1 + TCCTTTGCAACCTGAATTAGACTCA -MN908947.3 25347 25369 nCoV-2019_83_RIGHT 1 - TTTGACTCCTTTGAGCACTGGC -MN908947.3 25279 25301 nCoV-2019_84_LEFT 2 + TGCTGTAGTTGTCTCAAGGGCT -MN908947.3 25646 25673 nCoV-2019_84_RIGHT 2 - AGGTGTGAGTAAACTGTTACAAACAAC -MN908947.3 25601 25623 nCoV-2019_85_LEFT 1 + ACTAGCACTCTCCAAGGGTGTT -MN908947.3 25969 25994 nCoV-2019_85_RIGHT 1 - ACACAGTCTTTTACTCCAGATTCCC -MN908947.3 25902 25924 nCoV-2019_86_LEFT 2 + TCAGGTGATGGCACAACAAGTC -MN908947.3 26290 26315 nCoV-2019_86_RIGHT 2 - ACGAAAGCAAGAAAAAGAAGTACGC -MN908947.3 26197 26219 nCoV-2019_87_LEFT 1 + CGACTACTAGCGTGCCTTTGTA -MN908947.3 26566 26590 nCoV-2019_87_RIGHT 1 - ACTAGGTTCCATTGTTCAAGGAGC -MN908947.3 26520 26542 nCoV-2019_88_LEFT 2 + CCATGGCAGATTCCAACGGTAC -MN908947.3 26890 26913 nCoV-2019_88_RIGHT 2 - TGGTCAGAATAGTGCCATGGAGT -MN908947.3 26835 26857 nCoV-2019_89_LEFT 1 + GTACGCGTTCCATGTGGTCATT -MN908947.3 27202 27227 nCoV-2019_89_RIGHT 1 - ACCTGAAAGTCAACGAGATGAAACA -MN908947.3 27141 27164 nCoV-2019_90_LEFT 2 + ACACAGACCATTCCAGTAGCAGT -MN908947.3 27511 27533 nCoV-2019_90_RIGHT 2 - TGAAATGGTGAATTGCCCTCGT -MN908947.3 27446 27471 nCoV-2019_91_LEFT 1 + TCACTACCAAGAGTGTGTTAGAGGT -MN908947.3 27825 27854 nCoV-2019_91_RIGHT 1 - TTCAAGTGAGAACCAAAAGATAATAAGCA -MN908947.3 27784 27808 nCoV-2019_92_LEFT 2 + TTTGTGCTTTTTAGCCTTTCTGCT -MN908947.3 28145 28172 nCoV-2019_92_RIGHT 2 - AGGTTCCTGGCAATTAATTGTAAAAGG -MN908947.3 28081 28104 nCoV-2019_93_LEFT 1 + TGAGGCTGGTTCTAAATCACCCA -MN908947.3 28442 28464 nCoV-2019_93_RIGHT 1 - AGGTCTTCCTTGCCATGTTGAG -MN908947.3 28394 28416 nCoV-2019_94_LEFT 2 + GGCCCCAAGGTTTACCCAATAA -MN908947.3 28756 28779 nCoV-2019_94_RIGHT 2 - TTTGGCAATGTTGTTCCTTGAGG -MN908947.3 28677 28699 nCoV-2019_95_LEFT 1 + TGAGGGAGCCTTGAATACACCA -MN908947.3 29041 29063 nCoV-2019_95_RIGHT 1 - CAGTACGTTTTTGCCGAGGCTT -MN908947.3 28985 29007 nCoV-2019_96_LEFT 2 + GCCAACAACAACAAGGCCAAAC -MN908947.3 29356 29378 nCoV-2019_96_RIGHT 2 - TAGGCTCTGTTGGTGGGAATGT -MN908947.3 29288 29316 nCoV-2019_97_LEFT 1 + TGGATGACAAAGATCCAAATTTCAAAGA -MN908947.3 29665 29693 nCoV-2019_97_RIGHT 1 - ACACACTGATTAAAGATTGCTATGTGAG -MN908947.3 29486 29510 nCoV-2019_98_LEFT 2 + AACAATTGCAACAATCCATGAGCA -MN908947.3 29836 29866 nCoV-2019_98_RIGHT 2 - TTCTCCTAAGAAGCTATTAAAATCACATGG diff --git a/sars-cov-2/artic/v2/scheme.bed b/sars-cov-2/artic/v2/scheme.bed deleted file mode 100644 index 056345d..0000000 --- a/sars-cov-2/artic/v2/scheme.bed +++ /dev/null @@ -1,196 +0,0 @@ -MN908947.3 30 54 nCoV-2019_1_LEFT 1 + -MN908947.3 385 410 nCoV-2019_1_RIGHT 1 - -MN908947.3 320 342 nCoV-2019_2_LEFT 2 + -MN908947.3 704 726 nCoV-2019_2_RIGHT 2 - -MN908947.3 642 664 nCoV-2019_3_LEFT 1 + -MN908947.3 1004 1028 nCoV-2019_3_RIGHT 1 - -MN908947.3 943 965 nCoV-2019_4_LEFT 2 + -MN908947.3 1312 1337 nCoV-2019_4_RIGHT 2 - -MN908947.3 1242 1264 nCoV-2019_5_LEFT 1 + -MN908947.3 1623 1651 nCoV-2019_5_RIGHT 1 - -MN908947.3 1573 1595 nCoV-2019_6_LEFT 2 + -MN908947.3 1942 1964 nCoV-2019_6_RIGHT 2 - -MN908947.3 1875 1897 nCoV-2019_7_LEFT 1 + -MN908947.3 2247 2269 nCoV-2019_7_RIGHT 1 - -MN908947.3 2181 2205 nCoV-2019_8_LEFT 2 + -MN908947.3 2568 2592 nCoV-2019_8_RIGHT 2 - -MN908947.3 2505 2529 nCoV-2019_9_LEFT 1 + -MN908947.3 2882 2904 nCoV-2019_9_RIGHT 1 - -MN908947.3 2826 2850 nCoV-2019_10_LEFT 2 + -MN908947.3 3183 3210 nCoV-2019_10_RIGHT 2 - -MN908947.3 3144 3166 nCoV-2019_11_LEFT 1 + -MN908947.3 3507 3531 nCoV-2019_11_RIGHT 1 - -MN908947.3 3460 3482 nCoV-2019_12_LEFT 2 + -MN908947.3 3826 3853 nCoV-2019_12_RIGHT 2 - -MN908947.3 3771 3795 nCoV-2019_13_LEFT 1 + -MN908947.3 4142 4164 nCoV-2019_13_RIGHT 1 - -MN908947.3 4054 4077 nCoV-2019_14_LEFT 2 + -MN908947.3 4428 4450 nCoV-2019_14_RIGHT 2 - -MN908947.3 4294 4321 nCoV-2019_15_LEFT 1 + -MN908947.3 4674 4696 nCoV-2019_15_RIGHT 1 - -MN908947.3 4636 4658 nCoV-2019_16_LEFT 2 + -MN908947.3 4995 5017 nCoV-2019_16_RIGHT 2 - -MN908947.3 4939 4966 nCoV-2019_17_LEFT 1 + -MN908947.3 5296 5321 nCoV-2019_17_RIGHT 1 - -MN908947.3 5257 5287 nCoV-2019_18_LEFT_alt2 2 + -MN908947.3 5620 5644 nCoV-2019_18_RIGHT 2 - -MN908947.3 5563 5586 nCoV-2019_19_LEFT 1 + -MN908947.3 5932 5957 nCoV-2019_19_RIGHT 1 - -MN908947.3 5867 5894 nCoV-2019_20_LEFT 2 + -MN908947.3 6247 6272 nCoV-2019_20_RIGHT 2 - -MN908947.3 6167 6196 nCoV-2019_21_LEFT 1 + -MN908947.3 6528 6550 nCoV-2019_21_RIGHT 1 - -MN908947.3 6466 6495 nCoV-2019_22_LEFT 2 + -MN908947.3 6846 6873 nCoV-2019_22_RIGHT 2 - -MN908947.3 6718 6745 nCoV-2019_23_LEFT 1 + -MN908947.3 7092 7117 nCoV-2019_23_RIGHT 1 - -MN908947.3 7035 7058 nCoV-2019_24_LEFT 2 + -MN908947.3 7389 7415 nCoV-2019_24_RIGHT 2 - -MN908947.3 7305 7332 nCoV-2019_25_LEFT 1 + -MN908947.3 7671 7694 nCoV-2019_25_RIGHT 1 - -MN908947.3 7626 7651 nCoV-2019_26_LEFT 2 + -MN908947.3 7997 8019 nCoV-2019_26_RIGHT 2 - -MN908947.3 7943 7968 nCoV-2019_27_LEFT 1 + -MN908947.3 8319 8341 nCoV-2019_27_RIGHT 1 - -MN908947.3 8249 8275 nCoV-2019_28_LEFT 2 + -MN908947.3 8635 8661 nCoV-2019_28_RIGHT 2 - -MN908947.3 8595 8619 nCoV-2019_29_LEFT 1 + -MN908947.3 8954 8983 nCoV-2019_29_RIGHT 1 - -MN908947.3 8888 8913 nCoV-2019_30_LEFT 2 + -MN908947.3 9245 9271 nCoV-2019_30_RIGHT 2 - -MN908947.3 9204 9226 nCoV-2019_31_LEFT 1 + -MN908947.3 9557 9585 nCoV-2019_31_RIGHT 1 - -MN908947.3 9477 9502 nCoV-2019_32_LEFT 2 + -MN908947.3 9834 9858 nCoV-2019_32_RIGHT 2 - -MN908947.3 9784 9806 nCoV-2019_33_LEFT 1 + -MN908947.3 10146 10171 nCoV-2019_33_RIGHT 1 - -MN908947.3 10076 10099 nCoV-2019_34_LEFT 2 + -MN908947.3 10437 10459 nCoV-2019_34_RIGHT 2 - -MN908947.3 10362 10384 nCoV-2019_35_LEFT 1 + -MN908947.3 10737 10763 nCoV-2019_35_RIGHT 1 - -MN908947.3 10666 10688 nCoV-2019_36_LEFT 2 + -MN908947.3 11048 11074 nCoV-2019_36_RIGHT 2 - -MN908947.3 10999 11022 nCoV-2019_37_LEFT 1 + -MN908947.3 11372 11394 nCoV-2019_37_RIGHT 1 - -MN908947.3 11306 11331 nCoV-2019_38_LEFT 2 + -MN908947.3 11668 11693 nCoV-2019_38_RIGHT 2 - -MN908947.3 11555 11584 nCoV-2019_39_LEFT 1 + -MN908947.3 11927 11949 nCoV-2019_39_RIGHT 1 - -MN908947.3 11863 11889 nCoV-2019_40_LEFT 2 + -MN908947.3 12234 12256 nCoV-2019_40_RIGHT 2 - -MN908947.3 12110 12133 nCoV-2019_41_LEFT 1 + -MN908947.3 12465 12490 nCoV-2019_41_RIGHT 1 - -MN908947.3 12417 12439 nCoV-2019_42_LEFT 2 + -MN908947.3 12779 12802 nCoV-2019_42_RIGHT 2 - -MN908947.3 12710 12732 nCoV-2019_43_LEFT 1 + -MN908947.3 13074 13096 nCoV-2019_43_RIGHT 1 - -MN908947.3 13005 13027 nCoV-2019_44_LEFT 2 + -MN908947.3 13378 13400 nCoV-2019_44_RIGHT 2 - -MN908947.3 13319 13344 nCoV-2019_45_LEFT 1 + -MN908947.3 13669 13699 nCoV-2019_45_RIGHT 1 - -MN908947.3 13599 13621 nCoV-2019_46_LEFT 2 + -MN908947.3 13962 13984 nCoV-2019_46_RIGHT 2 - -MN908947.3 13918 13946 nCoV-2019_47_LEFT 1 + -MN908947.3 14271 14299 nCoV-2019_47_RIGHT 1 - -MN908947.3 14207 14232 nCoV-2019_48_LEFT 2 + -MN908947.3 14579 14601 nCoV-2019_48_RIGHT 2 - -MN908947.3 14545 14570 nCoV-2019_49_LEFT 1 + -MN908947.3 14898 14926 nCoV-2019_49_RIGHT 1 - -MN908947.3 14865 14895 nCoV-2019_50_LEFT 2 + -MN908947.3 15224 15246 nCoV-2019_50_RIGHT 2 - -MN908947.3 15171 15193 nCoV-2019_51_LEFT 1 + -MN908947.3 15538 15560 nCoV-2019_51_RIGHT 1 - -MN908947.3 15481 15503 nCoV-2019_52_LEFT 2 + -MN908947.3 15861 15886 nCoV-2019_52_RIGHT 2 - -MN908947.3 15827 15851 nCoV-2019_53_LEFT 1 + -MN908947.3 16186 16209 nCoV-2019_53_RIGHT 1 - -MN908947.3 16118 16144 nCoV-2019_54_LEFT 2 + -MN908947.3 16485 16510 nCoV-2019_54_RIGHT 2 - -MN908947.3 16416 16444 nCoV-2019_55_LEFT 1 + -MN908947.3 16804 16833 nCoV-2019_55_RIGHT 1 - -MN908947.3 16748 16770 nCoV-2019_56_LEFT 2 + -MN908947.3 17130 17152 nCoV-2019_56_RIGHT 2 - -MN908947.3 17065 17087 nCoV-2019_57_LEFT 1 + -MN908947.3 17430 17452 nCoV-2019_57_RIGHT 1 - -MN908947.3 17381 17406 nCoV-2019_58_LEFT 2 + -MN908947.3 17738 17761 nCoV-2019_58_RIGHT 2 - -MN908947.3 17674 17697 nCoV-2019_59_LEFT 1 + -MN908947.3 18036 18062 nCoV-2019_59_RIGHT 1 - -MN908947.3 17966 17993 nCoV-2019_60_LEFT 2 + -MN908947.3 18324 18348 nCoV-2019_60_RIGHT 2 - -MN908947.3 18253 18275 nCoV-2019_61_LEFT 1 + -MN908947.3 18650 18672 nCoV-2019_61_RIGHT 1 - -MN908947.3 18596 18618 nCoV-2019_62_LEFT 2 + -MN908947.3 18957 18979 nCoV-2019_62_RIGHT 2 - -MN908947.3 18896 18918 nCoV-2019_63_LEFT 1 + -MN908947.3 19275 19297 nCoV-2019_63_RIGHT 1 - -MN908947.3 19204 19232 nCoV-2019_64_LEFT 2 + -MN908947.3 19591 19616 nCoV-2019_64_RIGHT 2 - -MN908947.3 19548 19570 nCoV-2019_65_LEFT 1 + -MN908947.3 19911 19939 nCoV-2019_65_RIGHT 1 - -MN908947.3 19844 19866 nCoV-2019_66_LEFT 2 + -MN908947.3 20231 20255 nCoV-2019_66_RIGHT 2 - -MN908947.3 20172 20200 nCoV-2019_67_LEFT 1 + -MN908947.3 20542 20572 nCoV-2019_67_RIGHT 1 - -MN908947.3 20472 20496 nCoV-2019_68_LEFT 2 + -MN908947.3 20867 20890 nCoV-2019_68_RIGHT 2 - -MN908947.3 20786 20813 nCoV-2019_69_LEFT 1 + -MN908947.3 21146 21169 nCoV-2019_69_RIGHT 1 - -MN908947.3 21075 21104 nCoV-2019_70_LEFT 2 + -MN908947.3 21427 21455 nCoV-2019_70_RIGHT 2 - -MN908947.3 21357 21386 nCoV-2019_71_LEFT 1 + -MN908947.3 21716 21743 nCoV-2019_71_RIGHT 1 - -MN908947.3 21658 21682 nCoV-2019_72_LEFT 2 + -MN908947.3 22013 22038 nCoV-2019_72_RIGHT 2 - -MN908947.3 21961 21990 nCoV-2019_73_LEFT 1 + -MN908947.3 22324 22346 nCoV-2019_73_RIGHT 1 - -MN908947.3 22262 22290 nCoV-2019_74_LEFT 2 + -MN908947.3 22626 22650 nCoV-2019_74_RIGHT 2 - -MN908947.3 22516 22542 nCoV-2019_75_LEFT 1 + -MN908947.3 22877 22903 nCoV-2019_75_RIGHT 1 - -MN908947.3 22797 22819 nCoV-2019_76_LEFT 2 + -MN908947.3 23192 23214 nCoV-2019_76_RIGHT 2 - -MN908947.3 23122 23144 nCoV-2019_77_LEFT 1 + -MN908947.3 23500 23522 nCoV-2019_77_RIGHT 1 - -MN908947.3 23443 23466 nCoV-2019_78_LEFT 2 + -MN908947.3 23822 23847 nCoV-2019_78_RIGHT 2 - -MN908947.3 23789 23812 nCoV-2019_79_LEFT 1 + -MN908947.3 24145 24169 nCoV-2019_79_RIGHT 1 - -MN908947.3 24078 24100 nCoV-2019_80_LEFT 2 + -MN908947.3 24443 24467 nCoV-2019_80_RIGHT 2 - -MN908947.3 24391 24416 nCoV-2019_81_LEFT 1 + -MN908947.3 24765 24789 nCoV-2019_81_RIGHT 1 - -MN908947.3 24696 24721 nCoV-2019_82_LEFT 2 + -MN908947.3 25052 25076 nCoV-2019_82_RIGHT 2 - -MN908947.3 24978 25003 nCoV-2019_83_LEFT 1 + -MN908947.3 25347 25369 nCoV-2019_83_RIGHT 1 - -MN908947.3 25279 25301 nCoV-2019_84_LEFT 2 + -MN908947.3 25646 25673 nCoV-2019_84_RIGHT 2 - -MN908947.3 25601 25623 nCoV-2019_85_LEFT 1 + -MN908947.3 25969 25994 nCoV-2019_85_RIGHT 1 - -MN908947.3 25902 25924 nCoV-2019_86_LEFT 2 + -MN908947.3 26290 26315 nCoV-2019_86_RIGHT 2 - -MN908947.3 26197 26219 nCoV-2019_87_LEFT 1 + -MN908947.3 26566 26590 nCoV-2019_87_RIGHT 1 - -MN908947.3 26520 26542 nCoV-2019_88_LEFT 2 + -MN908947.3 26890 26913 nCoV-2019_88_RIGHT 2 - -MN908947.3 26835 26857 nCoV-2019_89_LEFT 1 + -MN908947.3 27202 27227 nCoV-2019_89_RIGHT 1 - -MN908947.3 27141 27164 nCoV-2019_90_LEFT 2 + -MN908947.3 27511 27533 nCoV-2019_90_RIGHT 2 - -MN908947.3 27446 27471 nCoV-2019_91_LEFT 1 + -MN908947.3 27825 27854 nCoV-2019_91_RIGHT 1 - -MN908947.3 27784 27808 nCoV-2019_92_LEFT 2 + -MN908947.3 28145 28172 nCoV-2019_92_RIGHT 2 - -MN908947.3 28081 28104 nCoV-2019_93_LEFT 1 + -MN908947.3 28442 28464 nCoV-2019_93_RIGHT 1 - -MN908947.3 28394 28416 nCoV-2019_94_LEFT 2 + -MN908947.3 28756 28779 nCoV-2019_94_RIGHT 2 - -MN908947.3 28677 28699 nCoV-2019_95_LEFT 1 + -MN908947.3 29041 29063 nCoV-2019_95_RIGHT 1 - -MN908947.3 28985 29007 nCoV-2019_96_LEFT 2 + -MN908947.3 29356 29378 nCoV-2019_96_RIGHT 2 - -MN908947.3 29288 29316 nCoV-2019_97_LEFT 1 + -MN908947.3 29665 29693 nCoV-2019_97_RIGHT 1 - -MN908947.3 29486 29510 nCoV-2019_98_LEFT 2 + -MN908947.3 29836 29866 nCoV-2019_98_RIGHT 2 - diff --git a/sars-cov-2/artic/v3/info.yml b/sars-cov-2/artic/v3/info.yml deleted file mode 100644 index 791231c..0000000 --- a/sars-cov-2/artic/v3/info.yml +++ /dev/null @@ -1,16 +0,0 @@ -schema_version: 0.9.0 -name: artic-v3 -organism: sars-cov-2 -aliases: -- ARTIC/V3 -developers: -- organisation_name: ARTIC network - home_page: https://artic.network/ -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v3 -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -derived_from: artic-v2 -primer_scheme_status: DEPRECATED -primer_checksum: primaschema:34ca07d9c616461f -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/artic/v3/primer.bed b/sars-cov-2/artic/v3/primer.bed deleted file mode 100644 index 54b1d70..0000000 --- a/sars-cov-2/artic/v3/primer.bed +++ /dev/null @@ -1,218 +0,0 @@ -MN908947.3 30 54 nCoV-2019_1_LEFT 1 + ACCAACCAACTTTCGATCTCTTGT -MN908947.3 385 410 nCoV-2019_1_RIGHT 1 - CATCTTTAAGATGTTGACGTGCCTC -MN908947.3 320 342 nCoV-2019_2_LEFT 2 + CTGTTTTACAGGTTCGCGACGT -MN908947.3 704 726 nCoV-2019_2_RIGHT 2 - TAAGGATCAGTGCCAAGCTCGT -MN908947.3 642 664 nCoV-2019_3_LEFT 1 + CGGTAATAAAGGAGCTGGTGGC -MN908947.3 1004 1028 nCoV-2019_3_RIGHT 1 - AAGGTGTCTGCAATTCATAGCTCT -MN908947.3 943 965 nCoV-2019_4_LEFT 2 + GGTGTATACTGCTGCCGTGAAC -MN908947.3 1312 1337 nCoV-2019_4_RIGHT 2 - CACAAGTAGTGGCACCTTCTTTAGT -MN908947.3 1242 1264 nCoV-2019_5_LEFT 1 + TGGTGAAACTTCATGGCAGACG -MN908947.3 1623 1651 nCoV-2019_5_RIGHT 1 - ATTGATGTTGACTTTCTCTTTTTGGAGT -MN908947.3 1573 1595 nCoV-2019_6_LEFT 2 + GGTGTTGTTGGAGAAGGTTCCG -MN908947.3 1942 1964 nCoV-2019_6_RIGHT 2 - TAGCGGCCTTCTGTAAAACACG -MN908947.3 1875 1897 nCoV-2019_7_LEFT 1 + ATCAGAGGCTGCTCGTGTTGTA -MN908947.3 1868 1890 nCoV-2019_7_LEFT_alt0 1 + CATTTGCATCAGAGGCTGCTCG -MN908947.3 2247 2269 nCoV-2019_7_RIGHT 1 - TGCACAGGTGACAATTTGTCCA -MN908947.3 2242 2264 nCoV-2019_7_RIGHT_alt5 1 - AGGTGACAATTTGTCCACCGAC -MN908947.3 2181 2205 nCoV-2019_8_LEFT 2 + AGAGTTTCTTAGAGACGGTTGGGA -MN908947.3 2568 2592 nCoV-2019_8_RIGHT 2 - GCTTCAACAGCTTCACTAGTAGGT -MN908947.3 2505 2529 nCoV-2019_9_LEFT 1 + TCCCACAGAAGTGTTAACAGAGGA -MN908947.3 2504 2528 nCoV-2019_9_LEFT_alt4 1 + TTCCCACAGAAGTGTTAACAGAGG -MN908947.3 2882 2904 nCoV-2019_9_RIGHT 1 - ATGACAGCATCTGCCACAACAC -MN908947.3 2880 2902 nCoV-2019_9_RIGHT_alt2 1 - GACAGCATCTGCCACAACACAG -MN908947.3 2826 2850 nCoV-2019_10_LEFT 2 + TGAGAAGTGCTCTGCCTATACAGT -MN908947.3 3183 3210 nCoV-2019_10_RIGHT 2 - TCATCTAACCAATCTTCTTCTTGCTCT -MN908947.3 3144 3166 nCoV-2019_11_LEFT 1 + GGAATTTGGTGCCACTTCTGCT -MN908947.3 3507 3531 nCoV-2019_11_RIGHT 1 - TCATCAGATTCAACTTGCATGGCA -MN908947.3 3460 3482 nCoV-2019_12_LEFT 2 + AAACATGGAGGAGGTGTTGCAG -MN908947.3 3826 3853 nCoV-2019_12_RIGHT 2 - TTCACTCTTCATTTCCAAAAAGCTTGA -MN908947.3 3771 3795 nCoV-2019_13_LEFT 1 + TCGCACAAATGTCTACTTAGCTGT -MN908947.3 4142 4164 nCoV-2019_13_RIGHT 1 - ACCACAGCAGTTAAAACACCCT -MN908947.3 4054 4077 nCoV-2019_14_LEFT 2 + CATCCAGATTCTGCCACTCTTGT -MN908947.3 4044 4068 nCoV-2019_14_LEFT_alt4 2 + TGGCAATCTTCATCCAGATTCTGC -MN908947.3 4428 4450 nCoV-2019_14_RIGHT 2 - AGTTTCCACACAGACAGGCATT -MN908947.3 4402 4424 nCoV-2019_14_RIGHT_alt2 2 - TGCGTGTTTCTTCTGCATGTGC -MN908947.3 4294 4321 nCoV-2019_15_LEFT 1 + ACAGTGCTTAAAAAGTGTAAAAGTGCC -MN908947.3 4296 4322 nCoV-2019_15_LEFT_alt1 1 + AGTGCTTAAAAAGTGTAAAAGTGCCT -MN908947.3 4674 4696 nCoV-2019_15_RIGHT 1 - AACAGAAACTGTAGCTGGCACT -MN908947.3 4666 4689 nCoV-2019_15_RIGHT_alt3 1 - ACTGTAGCTGGCACTTTGAGAGA -MN908947.3 4636 4658 nCoV-2019_16_LEFT 2 + AATTTGGAAGAAGCTGCTCGGT -MN908947.3 4995 5017 nCoV-2019_16_RIGHT 2 - CACAACTTGCGTGTGGAGGTTA -MN908947.3 4939 4966 nCoV-2019_17_LEFT 1 + CTTCTTTCTTTGAGAGAAGTGAGGACT -MN908947.3 5296 5321 nCoV-2019_17_RIGHT 1 - TTTGTTGGAGTGTTAACAATGCAGT -MN908947.3 5230 5259 nCoV-2019_18_LEFT 2 + TGGAAATACCCACAAGTTAATGGTTTAAC -MN908947.3 5257 5287 nCoV-2019_18_LEFT_alt2 2 + ACTTCTATTAAATGGGCAGATAACAACTGT -MN908947.3 5620 5644 nCoV-2019_18_RIGHT 2 - AGCTTGTTTACCACACGTACAAGG -MN908947.3 5620 5643 nCoV-2019_18_RIGHT_alt1 2 - GCTTGTTTACCACACGTACAAGG -MN908947.3 5563 5586 nCoV-2019_19_LEFT 1 + GCTGTTATGTACATGGGCACACT -MN908947.3 5932 5957 nCoV-2019_19_RIGHT 1 - TGTCCAACTTAGGGTCAATTTCTGT -MN908947.3 5867 5894 nCoV-2019_20_LEFT 2 + ACAAAGAAAACAGTTACACAACAACCA -MN908947.3 6247 6272 nCoV-2019_20_RIGHT 2 - ACGTGGCTTTATTAGTTGCATTGTT -MN908947.3 6167 6196 nCoV-2019_21_LEFT 1 + TGGCTATTGATTATAAACACTACACACCC -MN908947.3 6168 6197 nCoV-2019_21_LEFT_alt2 1 + GGCTATTGATTATAAACACTACACACCCT -MN908947.3 6528 6550 nCoV-2019_21_RIGHT 1 - TAGATCTGTGTGGCCAACCTCT -MN908947.3 6526 6548 nCoV-2019_21_RIGHT_alt0 1 - GATCTGTGTGGCCAACCTCTTC -MN908947.3 6466 6495 nCoV-2019_22_LEFT 2 + ACTACCGAAGTTGTAGGAGACATTATACT -MN908947.3 6846 6873 nCoV-2019_22_RIGHT 2 - ACAGTATTCTTTGCTATAGTAGTCGGC -MN908947.3 6718 6745 nCoV-2019_23_LEFT 1 + ACAACTACTAACATAGTTACACGGTGT -MN908947.3 7092 7117 nCoV-2019_23_RIGHT 1 - ACCAGTACAGTAGGTTGCAATAGTG -MN908947.3 7035 7058 nCoV-2019_24_LEFT 2 + AGGCATGCCTTCTTACTGTACTG -MN908947.3 7389 7415 nCoV-2019_24_RIGHT 2 - ACATTCTAACCATAGCTGAAATCGGG -MN908947.3 7305 7332 nCoV-2019_25_LEFT 1 + GCAATTGTTTTTCAGCTATTTTGCAGT -MN908947.3 7671 7694 nCoV-2019_25_RIGHT 1 - ACTGTAGTGACAAGTCTCTCGCA -MN908947.3 7626 7651 nCoV-2019_26_LEFT 2 + TTGTGATACATTCTGTGCTGGTAGT -MN908947.3 7997 8019 nCoV-2019_26_RIGHT 2 - TCCGCACTATCACCAACATCAG -MN908947.3 7943 7968 nCoV-2019_27_LEFT 1 + ACTACAGTCAGCTTATGTGTCAACC -MN908947.3 8319 8341 nCoV-2019_27_RIGHT 1 - AATACAAGCACCAAGGTCACGG -MN908947.3 8249 8275 nCoV-2019_28_LEFT 2 + ACATAGAAGTTACTGGCGATAGTTGT -MN908947.3 8635 8661 nCoV-2019_28_RIGHT 2 - TGTTTAGACATGACATGAACAGGTGT -MN908947.3 8595 8619 nCoV-2019_29_LEFT 1 + ACTTGTGTTCCTTTTTGTTGCTGC -MN908947.3 8954 8983 nCoV-2019_29_RIGHT 1 - AGTGTACTCTATAAGTTTTGATGGTGTGT -MN908947.3 8888 8913 nCoV-2019_30_LEFT 2 + GCACAACTAATGGTGACTTTTTGCA -MN908947.3 9245 9271 nCoV-2019_30_RIGHT 2 - ACCACTAGTAGATACACAAACACCAG -MN908947.3 9204 9226 nCoV-2019_31_LEFT 1 + TTCTGAGTACTGTAGGCACGGC -MN908947.3 9557 9585 nCoV-2019_31_RIGHT 1 - ACAGAATAAACACCAGGTAAGAATGAGT -MN908947.3 9477 9502 nCoV-2019_32_LEFT 2 + TGGTGAATACAGTCATGTAGTTGCC -MN908947.3 9834 9858 nCoV-2019_32_RIGHT 2 - AGCACATCACTACGCAACTTTAGA -MN908947.3 9784 9806 nCoV-2019_33_LEFT 1 + ACTTTTGAAGAAGCTGCGCTGT -MN908947.3 10146 10171 nCoV-2019_33_RIGHT 1 - TGGACAGTAAACTACGTCATCAAGC -MN908947.3 10076 10099 nCoV-2019_34_LEFT 2 + TCCCATCTGGTAAAGTTGAGGGT -MN908947.3 10437 10459 nCoV-2019_34_RIGHT 2 - AGTGAAATTGGGCCTCATAGCA -MN908947.3 10362 10384 nCoV-2019_35_LEFT 1 + TGTTCGCATTCAACCAGGACAG -MN908947.3 10737 10763 nCoV-2019_35_RIGHT 1 - ACTTCATAGCCACAAGGTTAAAGTCA -MN908947.3 10666 10688 nCoV-2019_36_LEFT 2 + TTAGCTTGGTTGTACGCTGCTG -MN908947.3 11048 11074 nCoV-2019_36_RIGHT 2 - GAACAAAGACCATTGAGTACTCTGGA -MN908947.3 10999 11022 nCoV-2019_37_LEFT 1 + ACACACCACTGGTTGTTACTCAC -MN908947.3 11372 11394 nCoV-2019_37_RIGHT 1 - GTCCACACTCTCCTAGCACCAT -MN908947.3 11306 11331 nCoV-2019_38_LEFT 2 + ACTGTGTTATGTATGCATCAGCTGT -MN908947.3 11668 11693 nCoV-2019_38_RIGHT 2 - CACCAAGAGTCAGTCTAAAGTAGCG -MN908947.3 11555 11584 nCoV-2019_39_LEFT 1 + AGTATTGCCCTATTTTCTTCATAACTGGT -MN908947.3 11927 11949 nCoV-2019_39_RIGHT 1 - TGTAACTGGACACATTGAGCCC -MN908947.3 11863 11889 nCoV-2019_40_LEFT 2 + TGCACATCAGTAGTCTTACTCTCAGT -MN908947.3 12234 12256 nCoV-2019_40_RIGHT 2 - CATGGCTGCATCACGGTCAAAT -MN908947.3 12110 12133 nCoV-2019_41_LEFT 1 + GTTCCCTTCCATCATATGCAGCT -MN908947.3 12465 12490 nCoV-2019_41_RIGHT 1 - TGGTATGACAACCATTAGTTTGGCT -MN908947.3 12417 12439 nCoV-2019_42_LEFT 2 + TGCAAGAGATGGTTGTGTTCCC -MN908947.3 12779 12802 nCoV-2019_42_RIGHT 2 - CCTACCTCCCTTTGTTGTGTTGT -MN908947.3 12710 12732 nCoV-2019_43_LEFT 1 + TACGACAGATGTCTTGTGCTGC -MN908947.3 13074 13096 nCoV-2019_43_RIGHT 1 - AGCAGCATCTACAGCAAAAGCA -MN908947.3 13005 13027 nCoV-2019_44_LEFT 2 + TGCCACAGTACGTCTACAAGCT -MN908947.3 13007 13029 nCoV-2019_44_LEFT_alt3 2 + CCACAGTACGTCTACAAGCTGG -MN908947.3 13378 13400 nCoV-2019_44_RIGHT 2 - AACCTTTCCACATACCGCAGAC -MN908947.3 13363 13385 nCoV-2019_44_RIGHT_alt0 2 - CGCAGACGGTACAGACTGTGTT -MN908947.3 13319 13344 nCoV-2019_45_LEFT 1 + TACCTACAACTTGTGCTAATGACCC -MN908947.3 13307 13336 nCoV-2019_45_LEFT_alt2 1 + AGTATGTACAAATACCTACAACTTGTGCT -MN908947.3 13669 13699 nCoV-2019_45_RIGHT 1 - AAATTGTTTCTTCATGTTGGTAGTTAGAGA -MN908947.3 13660 13689 nCoV-2019_45_RIGHT_alt7 1 - TTCATGTTGGTAGTTAGAGAAAGTGTGTC -MN908947.3 13599 13621 nCoV-2019_46_LEFT 2 + TGTCGCTTCCAAGAAAAGGACG -MN908947.3 13602 13625 nCoV-2019_46_LEFT_alt1 2 + CGCTTCCAAGAAAAGGACGAAGA -MN908947.3 13962 13984 nCoV-2019_46_RIGHT 2 - CACGTTCACCTAAGTTGGCGTA -MN908947.3 13961 13984 nCoV-2019_46_RIGHT_alt2 2 - CACGTTCACCTAAGTTGGCGTAT -MN908947.3 13918 13946 nCoV-2019_47_LEFT 1 + AGGACTGGTATGATTTTGTAGAAAACCC -MN908947.3 14271 14299 nCoV-2019_47_RIGHT 1 - AATAACGGTCAAAGAGTTTTAACCTCTC -MN908947.3 14207 14232 nCoV-2019_48_LEFT 2 + TGTTGACACTGACTTAACAAAGCCT -MN908947.3 14579 14601 nCoV-2019_48_RIGHT 2 - TAGATTACCAGAAGCAGCGTGC -MN908947.3 14545 14570 nCoV-2019_49_LEFT 1 + AGGAATTACTTGTGTATGCTGCTGA -MN908947.3 14898 14926 nCoV-2019_49_RIGHT 1 - TGACGATGACTTGGTTAGCATTAATACA -MN908947.3 14865 14895 nCoV-2019_50_LEFT 2 + GTTGATAAGTACTTTGATTGTTACGATGGT -MN908947.3 15224 15246 nCoV-2019_50_RIGHT 2 - TAACATGTTGTGCCAACCACCA -MN908947.3 15171 15193 nCoV-2019_51_LEFT 1 + TCAATAGCCGCCACTAGAGGAG -MN908947.3 15538 15560 nCoV-2019_51_RIGHT 1 - AGTGCATTAACATTGGCCGTGA -MN908947.3 15481 15503 nCoV-2019_52_LEFT 2 + CATCAGGAGATGCCACAACTGC -MN908947.3 15861 15886 nCoV-2019_52_RIGHT 2 - GTTGAGAGCAAAATTCATGAGGTCC -MN908947.3 15827 15851 nCoV-2019_53_LEFT 1 + AGCAAAATGTTGGACTGAGACTGA -MN908947.3 16186 16209 nCoV-2019_53_RIGHT 1 - AGCCTCATAAAACTCAGGTTCCC -MN908947.3 16118 16144 nCoV-2019_54_LEFT 2 + TGAGTTAACAGGACACATGTTAGACA -MN908947.3 16485 16510 nCoV-2019_54_RIGHT 2 - AACCAAAAACTTGTCCATTAGCACA -MN908947.3 16416 16444 nCoV-2019_55_LEFT 1 + ACTCAACTTTACTTAGGAGGTATGAGCT -MN908947.3 16804 16833 nCoV-2019_55_RIGHT 1 - GGTGTACTCTCCTATTTGTACTTTACTGT -MN908947.3 16748 16770 nCoV-2019_56_LEFT 2 + ACCTAGACCACCACTTAACCGA -MN908947.3 17130 17152 nCoV-2019_56_RIGHT 2 - ACACTATGCGAGCAGAAGGGTA -MN908947.3 17065 17087 nCoV-2019_57_LEFT 1 + ATTCTACACTCCAGGGACCACC -MN908947.3 17430 17452 nCoV-2019_57_RIGHT 1 - GTAATTGAGCAGGGTCGCCAAT -MN908947.3 17381 17406 nCoV-2019_58_LEFT 2 + TGATTTGAGTGTTGTCAATGCCAGA -MN908947.3 17738 17761 nCoV-2019_58_RIGHT 2 - CTTTTCTCCAAGCAGGGTTACGT -MN908947.3 17674 17697 nCoV-2019_59_LEFT 1 + TCACGCATGATGTTTCATCTGCA -MN908947.3 18036 18062 nCoV-2019_59_RIGHT 1 - AAGAGTCCTGTTACATTTTCAGCTTG -MN908947.3 17966 17993 nCoV-2019_60_LEFT 2 + TGATAGAGACCTTTATGACAAGTTGCA -MN908947.3 18324 18348 nCoV-2019_60_RIGHT 2 - GGTACCAACAGCTTCTCTAGTAGC -MN908947.3 18253 18275 nCoV-2019_61_LEFT 1 + TGTTTATCACCCGCGAAGAAGC -MN908947.3 18650 18672 nCoV-2019_61_RIGHT 1 - ATCACATAGACAACAGGTGCGC -MN908947.3 18596 18618 nCoV-2019_62_LEFT 2 + GGCACATGGCTTTGAGTTGACA -MN908947.3 18957 18979 nCoV-2019_62_RIGHT 2 - GTTGAACCTTTCTACAAGCCGC -MN908947.3 18896 18918 nCoV-2019_63_LEFT 1 + TGTTAAGCGTGTTGACTGGACT -MN908947.3 19275 19297 nCoV-2019_63_RIGHT 1 - ACAAACTGCCACCATCACAACC -MN908947.3 19204 19232 nCoV-2019_64_LEFT 2 + TCGATAGATATCCTGCTAATTCCATTGT -MN908947.3 19591 19616 nCoV-2019_64_RIGHT 2 - AGTCTTGTAAAAGTGTTCCAGAGGT -MN908947.3 19548 19570 nCoV-2019_65_LEFT 1 + GCTGGCTTTAGCTTGTGGGTTT -MN908947.3 19911 19939 nCoV-2019_65_RIGHT 1 - TGTCAGTCATAGAACAAACACCAATAGT -MN908947.3 19844 19866 nCoV-2019_66_LEFT 2 + GGGTGTGGACATTGCTGCTAAT -MN908947.3 20231 20255 nCoV-2019_66_RIGHT 2 - TCAATTTCCATTTGACTCCTGGGT -MN908947.3 20172 20200 nCoV-2019_67_LEFT 1 + GTTGTCCAACAATTACCTGAAACTTACT -MN908947.3 20542 20572 nCoV-2019_67_RIGHT 1 - CAACCTTAGAAACTACAGATAAATCTTGGG -MN908947.3 20472 20496 nCoV-2019_68_LEFT 2 + ACAGGTTCATCTAAGTGTGTGTGT -MN908947.3 20867 20890 nCoV-2019_68_RIGHT 2 - CTCCTTTATCAGAACCAGCACCA -MN908947.3 20786 20813 nCoV-2019_69_LEFT 1 + TGTCGCAAAATATACTCAACTGTGTCA -MN908947.3 21146 21169 nCoV-2019_69_RIGHT 1 - TCTTTATAGCCACGGAACCTCCA -MN908947.3 21075 21104 nCoV-2019_70_LEFT 2 + ACAAAAGAAAATGACTCTAAAGAGGGTTT -MN908947.3 21427 21455 nCoV-2019_70_RIGHT 2 - TGACCTTCTTTTAAAGACATAACAGCAG -MN908947.3 21357 21386 nCoV-2019_71_LEFT 1 + ACAAATCCAATTCAGTTGTCTTCCTATTC -MN908947.3 21716 21743 nCoV-2019_71_RIGHT 1 - TGGAAAAGAAAGGTAAGAACAAGTCCT -MN908947.3 21658 21682 nCoV-2019_72_LEFT 2 + ACACGTGGTGTTTATTACCCTGAC -MN908947.3 22013 22038 nCoV-2019_72_RIGHT 2 - ACTCTGAACTCACTTTCCATCCAAC -MN908947.3 21961 21990 nCoV-2019_73_LEFT 1 + CAATTTTGTAATGATCCATTTTTGGGTGT -MN908947.3 22324 22346 nCoV-2019_73_RIGHT 1 - CACCAGCTGTCCAACCTGAAGA -MN908947.3 22262 22290 nCoV-2019_74_LEFT 2 + ACATCACTAGGTTTCAAACTTTACTTGC -MN908947.3 22626 22650 nCoV-2019_74_RIGHT 2 - GCAACACAGTTGCTGATTCTCTTC -MN908947.3 22516 22542 nCoV-2019_75_LEFT 1 + AGAGTCCAACCAACAGAATCTATTGT -MN908947.3 22877 22903 nCoV-2019_75_RIGHT 1 - ACCACCAACCTTAGAATCAAGATTGT -MN908947.3 22797 22819 nCoV-2019_76_LEFT 2 + AGGGCAAACTGGAAAGATTGCT -MN908947.3 22798 22821 nCoV-2019_76_LEFT_alt3 2 + GGGCAAACTGGAAAGATTGCTGA -MN908947.3 23192 23214 nCoV-2019_76_RIGHT 2 - ACACCTGTGCCTGTTAAACCAT -MN908947.3 23189 23212 nCoV-2019_76_RIGHT_alt0 2 - ACCTGTGCCTGTTAAACCATTGA -MN908947.3 23122 23144 nCoV-2019_77_LEFT 1 + CCAGCAACTGTTTGTGGACCTA -MN908947.3 23500 23522 nCoV-2019_77_RIGHT 1 - CAGCCCCTATTAAACAGCCTGC -MN908947.3 23443 23466 nCoV-2019_78_LEFT 2 + CAACTTACTCCTACTTGGCGTGT -MN908947.3 23822 23847 nCoV-2019_78_RIGHT 2 - TGTGTACAAAAACTGCCATATTGCA -MN908947.3 23789 23812 nCoV-2019_79_LEFT 1 + GTGGTGATTCAACTGAATGCAGC -MN908947.3 24145 24169 nCoV-2019_79_RIGHT 1 - CATTTCATCTGTGAGCAAAGGTGG -MN908947.3 24078 24100 nCoV-2019_80_LEFT 2 + TTGCCTTGGTGATATTGCTGCT -MN908947.3 24443 24467 nCoV-2019_80_RIGHT 2 - TGGAGCTAAGTTGTTTAACAAGCG -MN908947.3 24391 24416 nCoV-2019_81_LEFT 1 + GCACTTGGAAAACTTCAAGATGTGG -MN908947.3 24765 24789 nCoV-2019_81_RIGHT 1 - GTGAAGTTCTTTTCTTGTGCAGGG -MN908947.3 24696 24721 nCoV-2019_82_LEFT 2 + GGGCTATCATCTTATGTCCTTCCCT -MN908947.3 25052 25076 nCoV-2019_82_RIGHT 2 - TGCCAGAGATGTCACCTAAATCAA -MN908947.3 24978 25003 nCoV-2019_83_LEFT 1 + TCCTTTGCAACCTGAATTAGACTCA -MN908947.3 25347 25369 nCoV-2019_83_RIGHT 1 - TTTGACTCCTTTGAGCACTGGC -MN908947.3 25279 25301 nCoV-2019_84_LEFT 2 + TGCTGTAGTTGTCTCAAGGGCT -MN908947.3 25646 25673 nCoV-2019_84_RIGHT 2 - AGGTGTGAGTAAACTGTTACAAACAAC -MN908947.3 25601 25623 nCoV-2019_85_LEFT 1 + ACTAGCACTCTCCAAGGGTGTT -MN908947.3 25969 25994 nCoV-2019_85_RIGHT 1 - ACACAGTCTTTTACTCCAGATTCCC -MN908947.3 25902 25924 nCoV-2019_86_LEFT 2 + TCAGGTGATGGCACAACAAGTC -MN908947.3 26290 26315 nCoV-2019_86_RIGHT 2 - ACGAAAGCAAGAAAAAGAAGTACGC -MN908947.3 26197 26219 nCoV-2019_87_LEFT 1 + CGACTACTAGCGTGCCTTTGTA -MN908947.3 26566 26590 nCoV-2019_87_RIGHT 1 - ACTAGGTTCCATTGTTCAAGGAGC -MN908947.3 26520 26542 nCoV-2019_88_LEFT 2 + CCATGGCAGATTCCAACGGTAC -MN908947.3 26890 26913 nCoV-2019_88_RIGHT 2 - TGGTCAGAATAGTGCCATGGAGT -MN908947.3 26835 26857 nCoV-2019_89_LEFT 1 + GTACGCGTTCCATGTGGTCATT -MN908947.3 26838 26860 nCoV-2019_89_LEFT_alt2 1 + CGCGTTCCATGTGGTCATTCAA -MN908947.3 27202 27227 nCoV-2019_89_RIGHT 1 - ACCTGAAAGTCAACGAGATGAAACA -MN908947.3 27190 27215 nCoV-2019_89_RIGHT_alt4 1 - ACGAGATGAAACATCTGTTGTCACT -MN908947.3 27141 27164 nCoV-2019_90_LEFT 2 + ACACAGACCATTCCAGTAGCAGT -MN908947.3 27511 27533 nCoV-2019_90_RIGHT 2 - TGAAATGGTGAATTGCCCTCGT -MN908947.3 27446 27471 nCoV-2019_91_LEFT 1 + TCACTACCAAGAGTGTGTTAGAGGT -MN908947.3 27825 27854 nCoV-2019_91_RIGHT 1 - TTCAAGTGAGAACCAAAAGATAATAAGCA -MN908947.3 27784 27808 nCoV-2019_92_LEFT 2 + TTTGTGCTTTTTAGCCTTTCTGCT -MN908947.3 28145 28172 nCoV-2019_92_RIGHT 2 - AGGTTCCTGGCAATTAATTGTAAAAGG -MN908947.3 28081 28104 nCoV-2019_93_LEFT 1 + TGAGGCTGGTTCTAAATCACCCA -MN908947.3 28442 28464 nCoV-2019_93_RIGHT 1 - AGGTCTTCCTTGCCATGTTGAG -MN908947.3 28394 28416 nCoV-2019_94_LEFT 2 + GGCCCCAAGGTTTACCCAATAA -MN908947.3 28756 28779 nCoV-2019_94_RIGHT 2 - TTTGGCAATGTTGTTCCTTGAGG -MN908947.3 28677 28699 nCoV-2019_95_LEFT 1 + TGAGGGAGCCTTGAATACACCA -MN908947.3 29041 29063 nCoV-2019_95_RIGHT 1 - CAGTACGTTTTTGCCGAGGCTT -MN908947.3 28985 29007 nCoV-2019_96_LEFT 2 + GCCAACAACAACAAGGCCAAAC -MN908947.3 29356 29378 nCoV-2019_96_RIGHT 2 - TAGGCTCTGTTGGTGGGAATGT -MN908947.3 29288 29316 nCoV-2019_97_LEFT 1 + TGGATGACAAAGATCCAAATTTCAAAGA -MN908947.3 29665 29693 nCoV-2019_97_RIGHT 1 - ACACACTGATTAAAGATTGCTATGTGAG -MN908947.3 29486 29510 nCoV-2019_98_LEFT 2 + AACAATTGCAACAATCCATGAGCA -MN908947.3 29836 29866 nCoV-2019_98_RIGHT 2 - TTCTCCTAAGAAGCTATTAAAATCACATGG diff --git a/sars-cov-2/artic/v3/scheme.bed b/sars-cov-2/artic/v3/scheme.bed deleted file mode 100644 index 76691de..0000000 --- a/sars-cov-2/artic/v3/scheme.bed +++ /dev/null @@ -1,218 +0,0 @@ -MN908947.3 30 54 nCoV-2019_1_LEFT 1 + -MN908947.3 385 410 nCoV-2019_1_RIGHT 1 - -MN908947.3 320 342 nCoV-2019_2_LEFT 2 + -MN908947.3 704 726 nCoV-2019_2_RIGHT 2 - -MN908947.3 642 664 nCoV-2019_3_LEFT 1 + -MN908947.3 1004 1028 nCoV-2019_3_RIGHT 1 - -MN908947.3 943 965 nCoV-2019_4_LEFT 2 + -MN908947.3 1312 1337 nCoV-2019_4_RIGHT 2 - -MN908947.3 1242 1264 nCoV-2019_5_LEFT 1 + -MN908947.3 1623 1651 nCoV-2019_5_RIGHT 1 - -MN908947.3 1573 1595 nCoV-2019_6_LEFT 2 + -MN908947.3 1942 1964 nCoV-2019_6_RIGHT 2 - -MN908947.3 1875 1897 nCoV-2019_7_LEFT 1 + -MN908947.3 1868 1890 nCoV-2019_7_LEFT_alt0 1 + -MN908947.3 2247 2269 nCoV-2019_7_RIGHT 1 - -MN908947.3 2242 2264 nCoV-2019_7_RIGHT_alt5 1 - -MN908947.3 2181 2205 nCoV-2019_8_LEFT 2 + -MN908947.3 2568 2592 nCoV-2019_8_RIGHT 2 - -MN908947.3 2505 2529 nCoV-2019_9_LEFT 1 + -MN908947.3 2504 2528 nCoV-2019_9_LEFT_alt4 1 + -MN908947.3 2882 2904 nCoV-2019_9_RIGHT 1 - -MN908947.3 2880 2902 nCoV-2019_9_RIGHT_alt2 1 - -MN908947.3 2826 2850 nCoV-2019_10_LEFT 2 + -MN908947.3 3183 3210 nCoV-2019_10_RIGHT 2 - -MN908947.3 3144 3166 nCoV-2019_11_LEFT 1 + -MN908947.3 3507 3531 nCoV-2019_11_RIGHT 1 - -MN908947.3 3460 3482 nCoV-2019_12_LEFT 2 + -MN908947.3 3826 3853 nCoV-2019_12_RIGHT 2 - -MN908947.3 3771 3795 nCoV-2019_13_LEFT 1 + -MN908947.3 4142 4164 nCoV-2019_13_RIGHT 1 - -MN908947.3 4054 4077 nCoV-2019_14_LEFT 2 + -MN908947.3 4044 4068 nCoV-2019_14_LEFT_alt4 2 + -MN908947.3 4428 4450 nCoV-2019_14_RIGHT 2 - -MN908947.3 4402 4424 nCoV-2019_14_RIGHT_alt2 2 - -MN908947.3 4294 4321 nCoV-2019_15_LEFT 1 + -MN908947.3 4296 4322 nCoV-2019_15_LEFT_alt1 1 + -MN908947.3 4674 4696 nCoV-2019_15_RIGHT 1 - -MN908947.3 4666 4689 nCoV-2019_15_RIGHT_alt3 1 - -MN908947.3 4636 4658 nCoV-2019_16_LEFT 2 + -MN908947.3 4995 5017 nCoV-2019_16_RIGHT 2 - -MN908947.3 4939 4966 nCoV-2019_17_LEFT 1 + -MN908947.3 5296 5321 nCoV-2019_17_RIGHT 1 - -MN908947.3 5230 5259 nCoV-2019_18_LEFT 2 + -MN908947.3 5257 5287 nCoV-2019_18_LEFT_alt2 2 + -MN908947.3 5620 5644 nCoV-2019_18_RIGHT 2 - -MN908947.3 5620 5643 nCoV-2019_18_RIGHT_alt1 2 - -MN908947.3 5563 5586 nCoV-2019_19_LEFT 1 + -MN908947.3 5932 5957 nCoV-2019_19_RIGHT 1 - -MN908947.3 5867 5894 nCoV-2019_20_LEFT 2 + -MN908947.3 6247 6272 nCoV-2019_20_RIGHT 2 - -MN908947.3 6167 6196 nCoV-2019_21_LEFT 1 + -MN908947.3 6168 6197 nCoV-2019_21_LEFT_alt2 1 + -MN908947.3 6528 6550 nCoV-2019_21_RIGHT 1 - -MN908947.3 6526 6548 nCoV-2019_21_RIGHT_alt0 1 - -MN908947.3 6466 6495 nCoV-2019_22_LEFT 2 + -MN908947.3 6846 6873 nCoV-2019_22_RIGHT 2 - -MN908947.3 6718 6745 nCoV-2019_23_LEFT 1 + -MN908947.3 7092 7117 nCoV-2019_23_RIGHT 1 - -MN908947.3 7035 7058 nCoV-2019_24_LEFT 2 + -MN908947.3 7389 7415 nCoV-2019_24_RIGHT 2 - -MN908947.3 7305 7332 nCoV-2019_25_LEFT 1 + -MN908947.3 7671 7694 nCoV-2019_25_RIGHT 1 - -MN908947.3 7626 7651 nCoV-2019_26_LEFT 2 + -MN908947.3 7997 8019 nCoV-2019_26_RIGHT 2 - -MN908947.3 7943 7968 nCoV-2019_27_LEFT 1 + -MN908947.3 8319 8341 nCoV-2019_27_RIGHT 1 - -MN908947.3 8249 8275 nCoV-2019_28_LEFT 2 + -MN908947.3 8635 8661 nCoV-2019_28_RIGHT 2 - -MN908947.3 8595 8619 nCoV-2019_29_LEFT 1 + -MN908947.3 8954 8983 nCoV-2019_29_RIGHT 1 - -MN908947.3 8888 8913 nCoV-2019_30_LEFT 2 + -MN908947.3 9245 9271 nCoV-2019_30_RIGHT 2 - -MN908947.3 9204 9226 nCoV-2019_31_LEFT 1 + -MN908947.3 9557 9585 nCoV-2019_31_RIGHT 1 - -MN908947.3 9477 9502 nCoV-2019_32_LEFT 2 + -MN908947.3 9834 9858 nCoV-2019_32_RIGHT 2 - -MN908947.3 9784 9806 nCoV-2019_33_LEFT 1 + -MN908947.3 10146 10171 nCoV-2019_33_RIGHT 1 - -MN908947.3 10076 10099 nCoV-2019_34_LEFT 2 + -MN908947.3 10437 10459 nCoV-2019_34_RIGHT 2 - -MN908947.3 10362 10384 nCoV-2019_35_LEFT 1 + -MN908947.3 10737 10763 nCoV-2019_35_RIGHT 1 - -MN908947.3 10666 10688 nCoV-2019_36_LEFT 2 + -MN908947.3 11048 11074 nCoV-2019_36_RIGHT 2 - -MN908947.3 10999 11022 nCoV-2019_37_LEFT 1 + -MN908947.3 11372 11394 nCoV-2019_37_RIGHT 1 - -MN908947.3 11306 11331 nCoV-2019_38_LEFT 2 + -MN908947.3 11668 11693 nCoV-2019_38_RIGHT 2 - -MN908947.3 11555 11584 nCoV-2019_39_LEFT 1 + -MN908947.3 11927 11949 nCoV-2019_39_RIGHT 1 - -MN908947.3 11863 11889 nCoV-2019_40_LEFT 2 + -MN908947.3 12234 12256 nCoV-2019_40_RIGHT 2 - -MN908947.3 12110 12133 nCoV-2019_41_LEFT 1 + -MN908947.3 12465 12490 nCoV-2019_41_RIGHT 1 - -MN908947.3 12417 12439 nCoV-2019_42_LEFT 2 + -MN908947.3 12779 12802 nCoV-2019_42_RIGHT 2 - -MN908947.3 12710 12732 nCoV-2019_43_LEFT 1 + -MN908947.3 13074 13096 nCoV-2019_43_RIGHT 1 - -MN908947.3 13005 13027 nCoV-2019_44_LEFT 2 + -MN908947.3 13007 13029 nCoV-2019_44_LEFT_alt3 2 + -MN908947.3 13378 13400 nCoV-2019_44_RIGHT 2 - -MN908947.3 13363 13385 nCoV-2019_44_RIGHT_alt0 2 - -MN908947.3 13319 13344 nCoV-2019_45_LEFT 1 + -MN908947.3 13307 13336 nCoV-2019_45_LEFT_alt2 1 + -MN908947.3 13669 13699 nCoV-2019_45_RIGHT 1 - -MN908947.3 13660 13689 nCoV-2019_45_RIGHT_alt7 1 - -MN908947.3 13599 13621 nCoV-2019_46_LEFT 2 + -MN908947.3 13602 13625 nCoV-2019_46_LEFT_alt1 2 + -MN908947.3 13962 13984 nCoV-2019_46_RIGHT 2 - -MN908947.3 13961 13984 nCoV-2019_46_RIGHT_alt2 2 - -MN908947.3 13918 13946 nCoV-2019_47_LEFT 1 + -MN908947.3 14271 14299 nCoV-2019_47_RIGHT 1 - -MN908947.3 14207 14232 nCoV-2019_48_LEFT 2 + -MN908947.3 14579 14601 nCoV-2019_48_RIGHT 2 - -MN908947.3 14545 14570 nCoV-2019_49_LEFT 1 + -MN908947.3 14898 14926 nCoV-2019_49_RIGHT 1 - -MN908947.3 14865 14895 nCoV-2019_50_LEFT 2 + -MN908947.3 15224 15246 nCoV-2019_50_RIGHT 2 - -MN908947.3 15171 15193 nCoV-2019_51_LEFT 1 + -MN908947.3 15538 15560 nCoV-2019_51_RIGHT 1 - -MN908947.3 15481 15503 nCoV-2019_52_LEFT 2 + -MN908947.3 15861 15886 nCoV-2019_52_RIGHT 2 - -MN908947.3 15827 15851 nCoV-2019_53_LEFT 1 + -MN908947.3 16186 16209 nCoV-2019_53_RIGHT 1 - -MN908947.3 16118 16144 nCoV-2019_54_LEFT 2 + -MN908947.3 16485 16510 nCoV-2019_54_RIGHT 2 - -MN908947.3 16416 16444 nCoV-2019_55_LEFT 1 + -MN908947.3 16804 16833 nCoV-2019_55_RIGHT 1 - -MN908947.3 16748 16770 nCoV-2019_56_LEFT 2 + -MN908947.3 17130 17152 nCoV-2019_56_RIGHT 2 - -MN908947.3 17065 17087 nCoV-2019_57_LEFT 1 + -MN908947.3 17430 17452 nCoV-2019_57_RIGHT 1 - -MN908947.3 17381 17406 nCoV-2019_58_LEFT 2 + -MN908947.3 17738 17761 nCoV-2019_58_RIGHT 2 - -MN908947.3 17674 17697 nCoV-2019_59_LEFT 1 + -MN908947.3 18036 18062 nCoV-2019_59_RIGHT 1 - -MN908947.3 17966 17993 nCoV-2019_60_LEFT 2 + -MN908947.3 18324 18348 nCoV-2019_60_RIGHT 2 - -MN908947.3 18253 18275 nCoV-2019_61_LEFT 1 + -MN908947.3 18650 18672 nCoV-2019_61_RIGHT 1 - -MN908947.3 18596 18618 nCoV-2019_62_LEFT 2 + -MN908947.3 18957 18979 nCoV-2019_62_RIGHT 2 - -MN908947.3 18896 18918 nCoV-2019_63_LEFT 1 + -MN908947.3 19275 19297 nCoV-2019_63_RIGHT 1 - -MN908947.3 19204 19232 nCoV-2019_64_LEFT 2 + -MN908947.3 19591 19616 nCoV-2019_64_RIGHT 2 - -MN908947.3 19548 19570 nCoV-2019_65_LEFT 1 + -MN908947.3 19911 19939 nCoV-2019_65_RIGHT 1 - -MN908947.3 19844 19866 nCoV-2019_66_LEFT 2 + -MN908947.3 20231 20255 nCoV-2019_66_RIGHT 2 - -MN908947.3 20172 20200 nCoV-2019_67_LEFT 1 + -MN908947.3 20542 20572 nCoV-2019_67_RIGHT 1 - -MN908947.3 20472 20496 nCoV-2019_68_LEFT 2 + -MN908947.3 20867 20890 nCoV-2019_68_RIGHT 2 - -MN908947.3 20786 20813 nCoV-2019_69_LEFT 1 + -MN908947.3 21146 21169 nCoV-2019_69_RIGHT 1 - -MN908947.3 21075 21104 nCoV-2019_70_LEFT 2 + -MN908947.3 21427 21455 nCoV-2019_70_RIGHT 2 - -MN908947.3 21357 21386 nCoV-2019_71_LEFT 1 + -MN908947.3 21716 21743 nCoV-2019_71_RIGHT 1 - -MN908947.3 21658 21682 nCoV-2019_72_LEFT 2 + -MN908947.3 22013 22038 nCoV-2019_72_RIGHT 2 - -MN908947.3 21961 21990 nCoV-2019_73_LEFT 1 + -MN908947.3 22324 22346 nCoV-2019_73_RIGHT 1 - -MN908947.3 22262 22290 nCoV-2019_74_LEFT 2 + -MN908947.3 22626 22650 nCoV-2019_74_RIGHT 2 - -MN908947.3 22516 22542 nCoV-2019_75_LEFT 1 + -MN908947.3 22877 22903 nCoV-2019_75_RIGHT 1 - -MN908947.3 22797 22819 nCoV-2019_76_LEFT 2 + -MN908947.3 22798 22821 nCoV-2019_76_LEFT_alt3 2 + -MN908947.3 23192 23214 nCoV-2019_76_RIGHT 2 - -MN908947.3 23189 23212 nCoV-2019_76_RIGHT_alt0 2 - -MN908947.3 23122 23144 nCoV-2019_77_LEFT 1 + -MN908947.3 23500 23522 nCoV-2019_77_RIGHT 1 - -MN908947.3 23443 23466 nCoV-2019_78_LEFT 2 + -MN908947.3 23822 23847 nCoV-2019_78_RIGHT 2 - -MN908947.3 23789 23812 nCoV-2019_79_LEFT 1 + -MN908947.3 24145 24169 nCoV-2019_79_RIGHT 1 - -MN908947.3 24078 24100 nCoV-2019_80_LEFT 2 + -MN908947.3 24443 24467 nCoV-2019_80_RIGHT 2 - -MN908947.3 24391 24416 nCoV-2019_81_LEFT 1 + -MN908947.3 24765 24789 nCoV-2019_81_RIGHT 1 - -MN908947.3 24696 24721 nCoV-2019_82_LEFT 2 + -MN908947.3 25052 25076 nCoV-2019_82_RIGHT 2 - -MN908947.3 24978 25003 nCoV-2019_83_LEFT 1 + -MN908947.3 25347 25369 nCoV-2019_83_RIGHT 1 - -MN908947.3 25279 25301 nCoV-2019_84_LEFT 2 + -MN908947.3 25646 25673 nCoV-2019_84_RIGHT 2 - -MN908947.3 25601 25623 nCoV-2019_85_LEFT 1 + -MN908947.3 25969 25994 nCoV-2019_85_RIGHT 1 - -MN908947.3 25902 25924 nCoV-2019_86_LEFT 2 + -MN908947.3 26290 26315 nCoV-2019_86_RIGHT 2 - -MN908947.3 26197 26219 nCoV-2019_87_LEFT 1 + -MN908947.3 26566 26590 nCoV-2019_87_RIGHT 1 - -MN908947.3 26520 26542 nCoV-2019_88_LEFT 2 + -MN908947.3 26890 26913 nCoV-2019_88_RIGHT 2 - -MN908947.3 26835 26857 nCoV-2019_89_LEFT 1 + -MN908947.3 26838 26860 nCoV-2019_89_LEFT_alt2 1 + -MN908947.3 27202 27227 nCoV-2019_89_RIGHT 1 - -MN908947.3 27190 27215 nCoV-2019_89_RIGHT_alt4 1 - -MN908947.3 27141 27164 nCoV-2019_90_LEFT 2 + -MN908947.3 27511 27533 nCoV-2019_90_RIGHT 2 - -MN908947.3 27446 27471 nCoV-2019_91_LEFT 1 + -MN908947.3 27825 27854 nCoV-2019_91_RIGHT 1 - -MN908947.3 27784 27808 nCoV-2019_92_LEFT 2 + -MN908947.3 28145 28172 nCoV-2019_92_RIGHT 2 - -MN908947.3 28081 28104 nCoV-2019_93_LEFT 1 + -MN908947.3 28442 28464 nCoV-2019_93_RIGHT 1 - -MN908947.3 28394 28416 nCoV-2019_94_LEFT 2 + -MN908947.3 28756 28779 nCoV-2019_94_RIGHT 2 - -MN908947.3 28677 28699 nCoV-2019_95_LEFT 1 + -MN908947.3 29041 29063 nCoV-2019_95_RIGHT 1 - -MN908947.3 28985 29007 nCoV-2019_96_LEFT 2 + -MN908947.3 29356 29378 nCoV-2019_96_RIGHT 2 - -MN908947.3 29288 29316 nCoV-2019_97_LEFT 1 + -MN908947.3 29665 29693 nCoV-2019_97_RIGHT 1 - -MN908947.3 29486 29510 nCoV-2019_98_LEFT 2 + -MN908947.3 29836 29866 nCoV-2019_98_RIGHT 2 - diff --git a/sars-cov-2/artic/v4.1/info.yml b/sars-cov-2/artic/v4.1/info.yml deleted file mode 100644 index e11bcdb..0000000 --- a/sars-cov-2/artic/v4.1/info.yml +++ /dev/null @@ -1,20 +0,0 @@ -schema_version: 0.9.0 -name: artic-v4.1 -organism: sars-cov-2 -aliases: -- ARTIC/V4.1 -developers: -- organisation_name: ARTIC network - home_page: https://artic.network/ -vendors: -- organisation_name: IDT - kit_name: '10011442' -- organisation_name: Eurofins - home_page: https://eurofinsgenomics.com -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v4.1 -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -derived_from: artic-v4 -primer_checksum: primaschema:9005b441227985c8 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/artic/v4.1/primer.bed b/sars-cov-2/artic/v4.1/primer.bed deleted file mode 100644 index 5b8e1d4..0000000 --- a/sars-cov-2/artic/v4.1/primer.bed +++ /dev/null @@ -1,209 +0,0 @@ -MN908947.3 25 50 SARS-CoV-2_1_LEFT 1 + AACAAACCAACCAACTTTCGATCTC -MN908947.3 324 344 SARS-CoV-2_2_LEFT 2 + TTTACAGGTTCGCGACGTGC -MN908947.3 408 431 SARS-CoV-2_1_RIGHT 1 - CTTCTACTAAGCCACAAGTGCCA -MN908947.3 644 666 SARS-CoV-2_3_LEFT 1 + GTAATAAAGGAGCTGGTGGCCA -MN908947.3 705 727 SARS-CoV-2_2_RIGHT 2 - ATAAGGATCAGTGCCAAGCTCG -MN908947.3 944 966 SARS-CoV-2_4_LEFT 2 + GTGTATACTGCTGCCGTGAACA -MN908947.3 1017 1044 SARS-CoV-2_3_RIGHT 1 - GCCAATTTAATTTCAAAAGGTGTCTGC -MN908947.3 1245 1266 SARS-CoV-2_5_LEFT 1 + TGAAACTTCATGGCAGACGGG -MN908947.3 1337 1362 SARS-CoV-2_4_RIGHT 2 - ACAACAGCATTTTGGGGTAAGTAAC -MN908947.3 1540 1562 SARS-CoV-2_6_LEFT 2 + CGTGCTAGCGCTAACATAGGTT -MN908947.3 1623 1650 SARS-CoV-2_5_RIGHT 1 - TTGATGTTGACTTTCTCTTTTTGGAGT -MN908947.3 1851 1875 SARS-CoV-2_7_LEFT 1 + ACTGAGTCCTCTTTATGCATTTGC -MN908947.3 1925 1948 SARS-CoV-2_6_RIGHT 2 - AACACGCACAGAATTTTGAGCAG -MN908947.3 2154 2180 SARS-CoV-2_8_LEFT 2 + GCTTGAAGAGAAGTTTAAGGAAGGTG -MN908947.3 2228 2250 SARS-CoV-2_7_RIGHT 1 - CCACCGACAATTTCACAAGCAC -MN908947.3 2483 2508 SARS-CoV-2_9_LEFT 1 + TCTTCTTAGAGGGAGAAACACTTCC -MN908947.3 2544 2571 SARS-CoV-2_8_RIGHT 2 - GGTTGTTCTAATGGTTGTAAATCACCA -MN908947.3 2780 2813 SARS-CoV-2_10_LEFT_alt1 2 + TGAATATCACTTTTGAACTTGATGAAAGGATTG -MN908947.3 2826 2850 SARS-CoV-2_10_LEFT 2 + TGAGAAGTGCTCTGCCTATACAGT -MN908947.3 2861 2885 SARS-CoV-2_9_RIGHT 1 - CACAGGCGAACTCATTTACTTCTG -MN908947.3 3078 3102 SARS-CoV-2_11_LEFT 1 + AGAAGAGTTTGAGCCATCAACTCA -MN908947.3 3156 3177 SARS-CoV-2_10_RIGHT_alt1 2 - GGTTGAAGAGCAGCAGAAGTG -MN908947.3 3183 3210 SARS-CoV-2_10_RIGHT 2 - TCATCTAACCAATCTTCTTCTTGCTCT -MN908947.3 3390 3412 SARS-CoV-2_12_LEFT 2 + TGCAGACATTGTGGAAGAAGCT -MN908947.3 3470 3492 SARS-CoV-2_11_RIGHT 1 - TTTAAGGCTCCTGCAACACCTC -MN908947.3 3683 3705 SARS-CoV-2_13_LEFT 1 + AGCACGAAGTTCTACTTGCACC -MN908947.3 3769 3794 SARS-CoV-2_12_RIGHT 2 - CAGCTAAGTAGACATTTGTGCGAAC -MN908947.3 3992 4018 SARS-CoV-2_14_LEFT 2 + TGGAAGAAACTAAGTTCCTCACAGAA -MN908947.3 4067 4093 SARS-CoV-2_13_RIGHT 1 - GATGTCAATGTCACTAACAAGAGTGG -MN908947.3 4312 4339 SARS-CoV-2_15_LEFT 1 + AAAAGTGCCTTTTACATTCTACCATCT -MN908947.3 4387 4409 SARS-CoV-2_14_RIGHT 2 - CATGTGCAAGCATTTCTCGCAA -MN908947.3 4620 4648 SARS-CoV-2_16_LEFT 2 + TGTAACACATGGCTTAAATTTGGAAGAA -MN908947.3 4685 4710 SARS-CoV-2_15_RIGHT 1 - GCATCAGGTGAAGAAACAGAAACTG -MN908947.3 4923 4953 SARS-CoV-2_17_LEFT 1 + TGACAATCTTAAGACACTTCTTTCTTTGAG -MN908947.3 4995 5017 SARS-CoV-2_16_RIGHT 2 - CACAACTTGCGTGTGGAGGTTA -MN908947.3 5230 5259 SARS-CoV-2_18_LEFT 2 + TGGAAATACCCACAAGTTAATGGTTTAAC -MN908947.3 5302 5331 SARS-CoV-2_17_RIGHT 1 - TTCAACTCTATTTGTTGGAGTGTTAACAA -MN908947.3 5561 5584 SARS-CoV-2_19_LEFT 1 + AAGCTGTTATGTACATGGGCACA -MN908947.3 5620 5643 SARS-CoV-2_18_RIGHT 2 - GCTTGTTTACCACACGTACAAGG -MN908947.3 5867 5894 SARS-CoV-2_20_LEFT 2 + ACAAAGAAAACAGTTACACAACAACCA -MN908947.3 5932 5957 SARS-CoV-2_19_RIGHT 1 - TGTCCAACTTAGGGTCAATTTCTGT -MN908947.3 6184 6210 SARS-CoV-2_21_LEFT 1 + CACTACACACCCTCTTTTAAGAAAGG -MN908947.3 6247 6272 SARS-CoV-2_20_RIGHT 2 - ACGTGGCTTTATTAGTTGCATTGTT -MN908947.3 6478 6507 SARS-CoV-2_22_LEFT 2 + GTAGGAGACATTATACTTAAACCAGCAAA -MN908947.3 6553 6582 SARS-CoV-2_21_RIGHT 1 - GTAAGACTAGAATTGTCTACATAAGCAGC -MN908947.3 6747 6776 SARS-CoV-2_23_LEFT 1 + AAACCGTGTTTGTACTAATTATATGCCTT -MN908947.3 6859 6885 SARS-CoV-2_22_RIGHT 2 - CCGACACTCTTAACAGTATTCTTTGC -MN908947.3 7057 7084 SARS-CoV-2_24_LEFT 2 + GGTTACAGAGAAGGCTATTTGAACTCT -MN908947.3 7122 7148 SARS-CoV-2_23_RIGHT 1 - AACCACTAAGACAAACACTACAAGGT -MN908947.3 7127 7156 SARS-CoV-2_23_RIGHT_alt1 1 - AGAATCTAAACCACTAAGACAAACACTAC -MN908947.3 7381 7403 SARS-CoV-2_25_LEFT 1 + CAAATGGCCCCGATTTCAGCTA -MN908947.3 7440 7467 SARS-CoV-2_24_RIGHT 2 - ACAACATGCACATAACTTTTCCATACA -MN908947.3 7672 7695 SARS-CoV-2_26_LEFT 2 + GCGAGAGACTTGTCACTACAGTT -MN908947.3 7747 7770 SARS-CoV-2_25_RIGHT 1 - TGGATGGAACCATTCTTCACTGT -MN908947.3 7997 8019 SARS-CoV-2_27_LEFT 1 + CTGATGTTGGTGATAGTGCGGA -MN908947.3 8063 8092 SARS-CoV-2_26_RIGHT 2 - GAGTTTTTCCATTGGTACGTTAAAAGTTG -MN908947.3 8304 8326 SARS-CoV-2_28_LEFT 2 + TGAAAACATGACACCCCGTGAC -MN908947.3 8367 8392 SARS-CoV-2_27_RIGHT_alt1 1 - AATGTTGTGACTTTTTGCTACCTGC -MN908947.3 8370 8395 SARS-CoV-2_27_RIGHT 1 - AGCAATGTTGTGACTTTTTGCTACC -MN908947.3 8596 8619 SARS-CoV-2_29_LEFT 1 + CTTGTGTTCCTTTTTGTTGCTGC -MN908947.3 8691 8714 SARS-CoV-2_28_RIGHT 2 - TGACACCACCATCAATAGCCTTG -MN908947.3 8919 8944 SARS-CoV-2_30_LEFT 2 + ACCTAGAGTTTTTAGTGCAGTTGGT -MN908947.3 8990 9013 SARS-CoV-2_29_RIGHT 1 - AGCCAAAACACAAGCTGATGTTG -MN908947.3 9168 9192 SARS-CoV-2_31_LEFT 1 + CCTTGAAGGTTCTGTTAGAGTGGT -MN908947.3 9306 9329 SARS-CoV-2_30_RIGHT 2 - CTACACCACAGAAAACTCCTGGT -MN908947.3 9470 9497 SARS-CoV-2_32_LEFT 2 + GAGCTTTTGGTGAATACAGTCATGTAG -MN908947.3 9535 9564 SARS-CoV-2_31_RIGHT 1 - AATGAGTAAACTGGTGTTAAACAGAGTAC -MN908947.3 9782 9805 SARS-CoV-2_33_LEFT 1 + GTACTTTTGAAGAAGCTGCGCTG -MN908947.3 9842 9866 SARS-CoV-2_32_RIGHT 2 - GAGGTAATAGCACATCACTACGCA -MN908947.3 10076 10099 SARS-CoV-2_34_LEFT 2 + TCCCATCTGGTAAAGTTGAGGGT -MN908947.3 10150 10176 SARS-CoV-2_33_RIGHT 1 - TGTCTTGGACAGTAAACTACGTCATC -MN908947.3 10393 10419 SARS-CoV-2_35_LEFT 1 + GTGTTAGCTTGTTACAATGGTTCACC -MN908947.3 10465 10491 SARS-CoV-2_34_RIGHT 2 - CCACATGAACCATTAAGGAATGAACC -MN908947.3 10713 10742 SARS-CoV-2_36_LEFT 2 + CAATCGATTTACCACAACTCTTAATGACT -MN908947.3 10785 10810 SARS-CoV-2_35_RIGHT 1 - AGGTCCTAGTATGTCAACATGGTCT -MN908947.3 11000 11023 SARS-CoV-2_37_LEFT 1 + CACACCACTGGTTGTTACTCACA -MN908947.3 11092 11116 SARS-CoV-2_36_RIGHT 2 - ACCCATAGCAAAAGGTAAAAAGGC -MN908947.3 11305 11330 SARS-CoV-2_38_LEFT 2 + GACTGTGTTATGTATGCATCAGCTG -MN908947.3 11388 11414 SARS-CoV-2_37_RIGHT 1 - GTGTCAAGACATTCATAAGTGTCCAC -MN908947.3 11624 11651 SARS-CoV-2_39_LEFT 1 + GCTATTTTTGTACTTGTTACTTTGGCC -MN908947.3 11689 11720 SARS-CoV-2_38_RIGHT 2 - CCTGTGTAGAAACTAAGTAATCATAAACACC -MN908947.3 11937 11963 SARS-CoV-2_40_LEFT 2 + TGTCCAGTTACACAATGACATTCTCT -MN908947.3 12011 12033 SARS-CoV-2_39_RIGHT 1 - CCCTGCATGGAAAGCAAAACAG -MN908947.3 12234 12255 SARS-CoV-2_41_LEFT 1 + ATTTGACCGTGATGCAGCCAT -MN908947.3 12317 12339 SARS-CoV-2_40_RIGHT 2 - ACTTTTGCCCTCTTGTCCTCAG -MN908947.3 12519 12546 SARS-CoV-2_42_LEFT 2 + TGGTACAACATTTACTTATGCATCAGC -MN908947.3 12618 12643 SARS-CoV-2_41_RIGHT 1 - AAGAGGCCATGCTAAATTAGGTGAA -MN908947.3 12831 12856 SARS-CoV-2_43_LEFT 1 + GGATTTGAAATGGGCTAGATTCCCT -MN908947.3 12895 12920 SARS-CoV-2_42_RIGHT 2 - TGTCTGTAACAAACCTACAAGGTGG -MN908947.3 13124 13148 SARS-CoV-2_44_LEFT 2 + GGGGACAACCAATCACTAATTGTG -MN908947.3 13218 13240 SARS-CoV-2_43_RIGHT 1 - CGATGCACCACCAAAGGATTCT -MN908947.3 13463 13485 SARS-CoV-2_45_LEFT 1 + TAAACGGGTTTGCGGTGTAAGT -MN908947.3 13506 13528 SARS-CoV-2_44_RIGHT 2 - CATCAGTACTAGTGCCTGTGCC -MN908947.3 13752 13775 SARS-CoV-2_46_LEFT 2 + AGAATAGACGGTGACATGGTACC -MN908947.3 13833 13859 SARS-CoV-2_45_RIGHT 1 - TCACAATTACCTTCATCAAAATGCCT -MN908947.3 14045 14075 SARS-CoV-2_47_LEFT 1 + TGGTGTACTGACATTAGATAATCAAGATCT -MN908947.3 14120 14144 SARS-CoV-2_46_RIGHT 2 - TCTACAACAGGAACTCCACTACCT -MN908947.3 14338 14362 SARS-CoV-2_48_LEFT 2 + ACTGTTTGGATGACAGATGCATTC -MN908947.3 14428 14457 SARS-CoV-2_47_RIGHT 1 - TGGAACACCATCAACAAATATTTTTCTCA -MN908947.3 14647 14674 SARS-CoV-2_49_LEFT 1 + ACAATGTTGCTTTTCAAACTGTCAAAC -MN908947.3 14717 14743 SARS-CoV-2_48_RIGHT 2 - CAGAACTTCCTTCCTTAAAGAAACCC -MN908947.3 14953 14983 SARS-CoV-2_50_LEFT 2 + CATTTAATAAATGGGGTAAGGCTAGACTTT -MN908947.3 15023 15050 SARS-CoV-2_49_RIGHT 1 - GGGATGACATTACGTTTTGTATATGCG -MN908947.3 15214 15237 SARS-CoV-2_51_LEFT 1 + GCAAATTCTATGGTGGTTGGCAC -MN908947.3 15336 15358 SARS-CoV-2_50_RIGHT 2 - GAGCAAGAACAAGTGAGGCCAT -MN908947.3 15535 15557 SARS-CoV-2_52_LEFT 2 + CTGTCACGGCCAATGTTAATGC -MN908947.3 15596 15619 SARS-CoV-2_51_RIGHT 1 - GTCTGTGTTGTAAATTGCGGACA -MN908947.3 15855 15881 SARS-CoV-2_53_LEFT 1 + ACTAAAGGACCTCATGAATTTTGCTC -MN908947.3 15917 15941 SARS-CoV-2_52_RIGHT 2 - GGATCTGGGTAAGGAAGGTACACA -MN908947.3 16112 16137 SARS-CoV-2_54_LEFT 2 + ACATGATGAGTTAACAGGACACATG -MN908947.3 16239 16260 SARS-CoV-2_53_RIGHT 1 - GCAAAGAACACAAGCCCCAAC -MN908947.3 16386 16408 SARS-CoV-2_55_LEFT 1 + AATGCTCCAGGTTGTGATGTCA -MN908947.3 16483 16508 SARS-CoV-2_54_RIGHT 2 - CCAAAAACTTGTCCATTAGCACACA -MN908947.3 16692 16714 SARS-CoV-2_56_LEFT 2 + ACTGTACGTGAAGTGCTGTCTG -MN908947.3 16767 16796 SARS-CoV-2_55_RIGHT 1 - ACACGATAACCAGTAAAGACATAATTTCG -MN908947.3 16986 17013 SARS-CoV-2_57_LEFT 1 + GGCTTATACCCAACACTCAATATCTCA -MN908947.3 17082 17105 SARS-CoV-2_56_RIGHT 2 - TGACTCTTACCAGTACCAGGTGG -MN908947.3 17323 17345 SARS-CoV-2_58_LEFT 2 + TGCCTGAGACGACAGCAGATAT -MN908947.3 17381 17405 SARS-CoV-2_57_RIGHT 1 - CTGGCATTGACAACACTCAAATCA -MN908947.3 17615 17642 SARS-CoV-2_59_LEFT 1 + GCTTAAAGCACATAAAGACAAATCAGC -MN908947.3 17688 17711 SARS-CoV-2_58_RIGHT 2 - TGTGGCCTGTTAATTGCAGATGA -MN908947.3 17911 17939 SARS-CoV-2_60_LEFT 2 + ACAGATTTAATGTTGCTATTACCAGAGC -MN908947.3 17997 18022 SARS-CoV-2_59_RIGHT 1 - TCCTACGTGGAATTTCAAGACTTGT -MN908947.3 18244 18267 SARS-CoV-2_61_LEFT 1 + ACCCTAACATGTTTATCACCCGC -MN908947.3 18307 18328 SARS-CoV-2_60_RIGHT 2 - TAGCATGACACCCCTCGACAT -MN908947.3 18550 18578 SARS-CoV-2_62_LEFT 2 + GTGACACACTTAAAAATCTCTCTGACAG -MN908947.3 18624 18652 SARS-CoV-2_61_RIGHT 1 - GCTCAGGTCCTATTTTCACAAAATACTT -MN908947.3 18869 18891 SARS-CoV-2_63_LEFT 1 + TAGGTGTCTAGCTGTCCACGAG -MN908947.3 18936 18961 SARS-CoV-2_62_RIGHT 2 - CCGCATTAATCTTCAGTTCATCACC -MN908947.3 19183 19208 SARS-CoV-2_64_LEFT 2 + GCCTATTTTGGAATTGCAATGTCGA -MN908947.3 19252 19277 SARS-CoV-2_63_RIGHT 1 - CCAGGCAAGTTAAGGTTAGATAGCA -MN908947.3 19485 19513 SARS-CoV-2_65_LEFT 1 + GTCTGTAGACATCATGCTAATGAGTACA -MN908947.3 19558 19586 SARS-CoV-2_64_RIGHT 2 - GTATCAAATTGTTTGTAAACCCACAAGC -MN908947.3 19810 19836 SARS-CoV-2_66_LEFT 2 + AACCAGTACCAGAGGTGAAAATACTC -MN908947.3 19877 19901 SARS-CoV-2_65_RIGHT 1 - GCTGGAGCATCTCTTTTGTAGTCC -MN908947.3 20090 20117 SARS-CoV-2_67_LEFT 1 + CAAACAAGCTAGTCTTAATGGAGTCAC -MN908947.3 20186 20216 SARS-CoV-2_66_RIGHT 2 - TTTCTACTCTGAGTAAAGTAAGTTTCAGGT -MN908947.3 20377 20405 SARS-CoV-2_68_LEFT 2 + GACTAGCTAAACGTTTTAAGGAATCACC -MN908947.3 20472 20497 SARS-CoV-2_67_RIGHT 1 - AACACACACACTTAGATGAACCTGT -MN908947.3 20677 20699 SARS-CoV-2_69_LEFT 1 + CGGGTGTTGCTATGCCTAATCT -MN908947.3 20766 20792 SARS-CoV-2_68_RIGHT 2 - GCGACATTCATCATTATGCCTTTAGG -MN908947.3 20988 21013 SARS-CoV-2_70_LEFT 2 + TTGATTGGTGATTGTGCAACTGTAC -MN908947.3 21050 21080 SARS-CoV-2_69_RIGHT 1 - TTTGTAACATTTTTAGTCTTAGGGTCGTAC -MN908947.3 21294 21316 SARS-CoV-2_71_LEFT 1 + GGCAAACCACGCGAACAAATAG -MN908947.3 21358 21387 SARS-CoV-2_70_RIGHT 2 - AGAATAGGAAGACAACTGAATTGGATTTG -MN908947.3 21532 21561 SARS-CoV-2_72_LEFT 2 + GTGATGTTCTTGTTAACAACTAAACGAAC -MN908947.3 21675 21700 SARS-CoV-2_71_RIGHT 1 - TGAGGATCTGAAAACTTTGTCAGGG -MN908947.3 21865 21889 SARS-CoV-2_73_LEFT 1 + AGAGGCTGGATTTTTGGTACTACT -MN908947.3 21904 21933 SARS-CoV-2_72_RIGHT 2 - GTAGCGTTATTAACAATAAGTAGGGACTG -MN908947.3 22091 22113 SARS-CoV-2_74_LEFT 2 + TGGACCTTGAAGGAAAACAGGG -MN908947.3 22247 22274 SARS-CoV-2_73_RIGHT 1 - ACCTAGTGATGTTAATACCTATTGGCA -MN908947.3 22402 22428 SARS-CoV-2_75_LEFT 1 + GAAAATGGAACCATTACAGATGCTGT -MN908947.3 22474 22503 SARS-CoV-2_74_RIGHT 2 - TGATAGATTCCTTTTTCTACAGTGAAGGA -MN908947.3 22648 22677 SARS-CoV-2_76_LEFT 2 + GCTGATTATTCTGTCCTATATAATTCCGC -MN908947.3 22742 22774 SARS-CoV-2_76_LEFT_alt1 2 + ATGTCTATGCAGATTCATTTGTAATTAGAGGT -MN908947.3 22785 22805 SARS-CoV-2_75_RIGHT 1 - TTTGCCCTGGAGCGATTTGT -MN908947.3 22944 22974 SARS-CoV-2_77_LEFT 1 + CAAACCTTTTGAGAGAGATATTTCAACTGA -MN908947.3 23028 23057 SARS-CoV-2_76_RIGHT 2 - GTTGGAAACCATATGATTGTAAAGGAAAG -MN908947.3 23120 23141 SARS-CoV-2_76_RIGHT_alt1 2 - GTCCACAAACAGTTGCTGGTG -MN908947.3 23219 23246 SARS-CoV-2_78_LEFT 2 + CTGAGTCTAACAAAAAGTTTCTGCCTT -MN908947.3 23327 23351 SARS-CoV-2_77_RIGHT 1 - CACTGACACCACCAAAAGAACATG -MN908947.3 23553 23575 SARS-CoV-2_79_LEFT 1 + ACCCATTGGTGCAGGTATATGC -MN908947.3 23611 23635 SARS-CoV-2_78_RIGHT 2 - GGATTGACTAGCTACACTACGTGC -MN908947.3 23853 23876 SARS-CoV-2_80_LEFT 2 + CCGTGCTTTAACTGGAATAGCTG -MN908947.3 23914 23944 SARS-CoV-2_79_RIGHT_alt1 1 - AATTGGTGGTGTTTTGTAAATTTGTTTGAC -MN908947.3 23927 23955 SARS-CoV-2_79_RIGHT 1 - CCAAAATCTTTAATTGGTGGTGTTTTGT -MN908947.3 24171 24194 SARS-CoV-2_81_LEFT 1 + TGCTCAATACACTTCTGCACTGT -MN908947.3 24233 24258 SARS-CoV-2_80_RIGHT 2 - GCAAATGGTATTTGTAATGCAGCAC -MN908947.3 24426 24448 SARS-CoV-2_82_LEFT 2 + TGCACAAGCTTTAAACACGCTT -MN908947.3 24545 24567 SARS-CoV-2_81_RIGHT 1 - TGAAGTCTGCCTGTGATCAACC -MN908947.3 24750 24772 SARS-CoV-2_83_LEFT 1 + GCATGTGACTTATGTCCCTGCA -MN908947.3 24814 24836 SARS-CoV-2_82_RIGHT 2 - CACGAGGAAAGTGTGCTTTTCC -MN908947.3 25051 25076 SARS-CoV-2_84_LEFT 2 + GTTGATTTAGGTGACATCTCTGGCA -MN908947.3 25122 25150 SARS-CoV-2_83_RIGHT 1 - AGATTCATTTAAATTCTTGGCAACCTCA -MN908947.3 25331 25353 SARS-CoV-2_85_LEFT 1 + ATGAAGACGACTCTGAGCCAGT -MN908947.3 25438 25461 SARS-CoV-2_84_RIGHT 2 - AGCATCCTTGATTTCACCTTGCT -MN908947.3 25645 25672 SARS-CoV-2_86_LEFT 2 + TGTTGTTTGTAACAGTTTACTCACACC -MN908947.3 25711 25740 SARS-CoV-2_85_RIGHT 1 - CTGCAAGAAGTAGACTAAAGCATAAAGAT -MN908947.3 25951 25979 SARS-CoV-2_87_LEFT 1 + GTGGTTATACTGAAAAATGGGAATCTGG -MN908947.3 26026 26050 SARS-CoV-2_86_RIGHT 2 - TCAATTGAGTTGAGTACAGCTGGT -MN908947.3 26242 26268 SARS-CoV-2_88_LEFT_alt1 2 + TTATGTACTCATTCGTTTCGGAAGAG -MN908947.3 26255 26277 SARS-CoV-2_88_LEFT 2 + CGTTTCGGAAGAGACAGGTACG -MN908947.3 26338 26360 SARS-CoV-2_87_RIGHT 1 - AATCGAAGCGCAGTAAGGATGG -MN908947.3 26564 26587 SARS-CoV-2_89_LEFT 1 + AAGCTCCTTGAACAATGGAACCT -MN908947.3 26592 26621 SARS-CoV-2_89_LEFT_alt1 1 + TAGGTTTCCTATTCCTTACATGGATTTGT -MN908947.3 26635 26661 SARS-CoV-2_88_RIGHT 2 - ACAAAAACCTATTCCTGTTGGCATAG -MN908947.3 26873 26895 SARS-CoV-2_90_LEFT 2 + ATTCTTCTCAACGTGCCACTCC -MN908947.3 26956 26979 SARS-CoV-2_89_RIGHT 1 - CAGCAATACGAAGATGTCCACGA -MN908947.3 26966 26991 SARS-CoV-2_89_RIGHT_alt1 1 - CTAGATGGTGTCCAGCAATACGAAG -MN908947.3 27152 27177 SARS-CoV-2_91_LEFT 1 + TCCAGTAGCAGTGACAATATTGCTT -MN908947.3 27218 27251 SARS-CoV-2_90_RIGHT_alt1 2 - ATTAGTAATATCTCTGCTATAGTAACCTGAAAG -MN908947.3 27256 27283 SARS-CoV-2_90_RIGHT 2 - TCCAAATGGAAACTTTAAAAGTCCTCA -MN908947.3 27447 27473 SARS-CoV-2_92_LEFT 2 + CACTACCAAGAGTGTGTTAGAGGTAC -MN908947.3 27534 27560 SARS-CoV-2_91_RIGHT 1 - AGTGCAAATTTGTTATCAGCTAGAGG -MN908947.3 27700 27726 SARS-CoV-2_93_LEFT 1 + TTGTTGCGGCAATAGTGTTTATAACA -MN908947.3 27826 27855 SARS-CoV-2_92_RIGHT 2 - GTTCAAGTGAGAACCAAAAGATAATAAGC -MN908947.3 27996 28021 SARS-CoV-2_94_LEFT 2 + ACCCGTGTCCTATTCACTTCTATTC -MN908947.3 28082 28104 SARS-CoV-2_93_RIGHT 1 - TGGGTGATTTAGAACCAGCCTC -MN908947.3 28190 28214 SARS-CoV-2_95_LEFT 1 + GTGCGTTGTTCGTTCTATGAAGAC -MN908947.3 28394 28416 SARS-CoV-2_94_RIGHT 2 - TTATTGGGTAAACCTTGGGGCC -MN908947.3 28512 28536 SARS-CoV-2_96_LEFT 2 + AGATGACCAAATTGGCTACTACCG -MN908947.3 28572 28598 SARS-CoV-2_95_RIGHT 1 - ACCATCTTGGACTGAGATCTTTCATT -MN908947.3 28827 28849 SARS-CoV-2_97_LEFT 1 + TTCCTCATCACGTAGTCGCAAC -MN908947.3 28893 28914 SARS-CoV-2_96_RIGHT 2 - CCATTGCCAGCCATTCTAGCA -MN908947.3 29136 29161 SARS-CoV-2_98_LEFT 2 + CCAGGAACTAATCAGACAAGGAACT -MN908947.3 29206 29227 SARS-CoV-2_97_RIGHT 1 - CGACATTCCGAAGAACGCTGA -MN908947.3 29452 29475 SARS-CoV-2_99_LEFT 1 + CTTCTTCCTGCTGCAGATTTGGA -MN908947.3 29512 29534 SARS-CoV-2_98_RIGHT 2 - TTTAGGCCTGAGTTGAGTCAGC -MN908947.3 29827 29854 SARS-CoV-2_99_RIGHT 1 - GCTATTAAAATCACATGGGGATAGCAC diff --git a/sars-cov-2/artic/v4.1/scheme.bed b/sars-cov-2/artic/v4.1/scheme.bed deleted file mode 100644 index 0f9e5b9..0000000 --- a/sars-cov-2/artic/v4.1/scheme.bed +++ /dev/null @@ -1,209 +0,0 @@ -MN908947.3 25 50 SARS-CoV-2_1_LEFT 1 + -MN908947.3 324 344 SARS-CoV-2_2_LEFT 2 + -MN908947.3 408 431 SARS-CoV-2_1_RIGHT 1 - -MN908947.3 644 666 SARS-CoV-2_3_LEFT 1 + -MN908947.3 705 727 SARS-CoV-2_2_RIGHT 2 - -MN908947.3 944 966 SARS-CoV-2_4_LEFT 2 + -MN908947.3 1017 1044 SARS-CoV-2_3_RIGHT 1 - -MN908947.3 1245 1266 SARS-CoV-2_5_LEFT 1 + -MN908947.3 1337 1362 SARS-CoV-2_4_RIGHT 2 - -MN908947.3 1540 1562 SARS-CoV-2_6_LEFT 2 + -MN908947.3 1623 1650 SARS-CoV-2_5_RIGHT 1 - -MN908947.3 1851 1875 SARS-CoV-2_7_LEFT 1 + -MN908947.3 1925 1948 SARS-CoV-2_6_RIGHT 2 - -MN908947.3 2154 2180 SARS-CoV-2_8_LEFT 2 + -MN908947.3 2228 2250 SARS-CoV-2_7_RIGHT 1 - -MN908947.3 2483 2508 SARS-CoV-2_9_LEFT 1 + -MN908947.3 2544 2571 SARS-CoV-2_8_RIGHT 2 - -MN908947.3 2780 2813 SARS-CoV-2_10_LEFT_alt1 2 + -MN908947.3 2826 2850 SARS-CoV-2_10_LEFT 2 + -MN908947.3 2861 2885 SARS-CoV-2_9_RIGHT 1 - -MN908947.3 3078 3102 SARS-CoV-2_11_LEFT 1 + -MN908947.3 3156 3177 SARS-CoV-2_10_RIGHT_alt1 2 - -MN908947.3 3183 3210 SARS-CoV-2_10_RIGHT 2 - -MN908947.3 3390 3412 SARS-CoV-2_12_LEFT 2 + -MN908947.3 3470 3492 SARS-CoV-2_11_RIGHT 1 - -MN908947.3 3683 3705 SARS-CoV-2_13_LEFT 1 + -MN908947.3 3769 3794 SARS-CoV-2_12_RIGHT 2 - -MN908947.3 3992 4018 SARS-CoV-2_14_LEFT 2 + -MN908947.3 4067 4093 SARS-CoV-2_13_RIGHT 1 - -MN908947.3 4312 4339 SARS-CoV-2_15_LEFT 1 + -MN908947.3 4387 4409 SARS-CoV-2_14_RIGHT 2 - -MN908947.3 4620 4648 SARS-CoV-2_16_LEFT 2 + -MN908947.3 4685 4710 SARS-CoV-2_15_RIGHT 1 - -MN908947.3 4923 4953 SARS-CoV-2_17_LEFT 1 + -MN908947.3 4995 5017 SARS-CoV-2_16_RIGHT 2 - -MN908947.3 5230 5259 SARS-CoV-2_18_LEFT 2 + -MN908947.3 5302 5331 SARS-CoV-2_17_RIGHT 1 - -MN908947.3 5561 5584 SARS-CoV-2_19_LEFT 1 + -MN908947.3 5620 5643 SARS-CoV-2_18_RIGHT 2 - -MN908947.3 5867 5894 SARS-CoV-2_20_LEFT 2 + -MN908947.3 5932 5957 SARS-CoV-2_19_RIGHT 1 - -MN908947.3 6184 6210 SARS-CoV-2_21_LEFT 1 + -MN908947.3 6247 6272 SARS-CoV-2_20_RIGHT 2 - -MN908947.3 6478 6507 SARS-CoV-2_22_LEFT 2 + -MN908947.3 6553 6582 SARS-CoV-2_21_RIGHT 1 - -MN908947.3 6747 6776 SARS-CoV-2_23_LEFT 1 + -MN908947.3 6859 6885 SARS-CoV-2_22_RIGHT 2 - -MN908947.3 7057 7084 SARS-CoV-2_24_LEFT 2 + -MN908947.3 7122 7148 SARS-CoV-2_23_RIGHT 1 - -MN908947.3 7127 7156 SARS-CoV-2_23_RIGHT_alt1 1 - -MN908947.3 7381 7403 SARS-CoV-2_25_LEFT 1 + -MN908947.3 7440 7467 SARS-CoV-2_24_RIGHT 2 - -MN908947.3 7672 7695 SARS-CoV-2_26_LEFT 2 + -MN908947.3 7747 7770 SARS-CoV-2_25_RIGHT 1 - -MN908947.3 7997 8019 SARS-CoV-2_27_LEFT 1 + -MN908947.3 8063 8092 SARS-CoV-2_26_RIGHT 2 - -MN908947.3 8304 8326 SARS-CoV-2_28_LEFT 2 + -MN908947.3 8367 8392 SARS-CoV-2_27_RIGHT_alt1 1 - -MN908947.3 8370 8395 SARS-CoV-2_27_RIGHT 1 - -MN908947.3 8596 8619 SARS-CoV-2_29_LEFT 1 + -MN908947.3 8691 8714 SARS-CoV-2_28_RIGHT 2 - -MN908947.3 8919 8944 SARS-CoV-2_30_LEFT 2 + -MN908947.3 8990 9013 SARS-CoV-2_29_RIGHT 1 - -MN908947.3 9168 9192 SARS-CoV-2_31_LEFT 1 + -MN908947.3 9306 9329 SARS-CoV-2_30_RIGHT 2 - -MN908947.3 9470 9497 SARS-CoV-2_32_LEFT 2 + -MN908947.3 9535 9564 SARS-CoV-2_31_RIGHT 1 - -MN908947.3 9782 9805 SARS-CoV-2_33_LEFT 1 + -MN908947.3 9842 9866 SARS-CoV-2_32_RIGHT 2 - -MN908947.3 10076 10099 SARS-CoV-2_34_LEFT 2 + -MN908947.3 10150 10176 SARS-CoV-2_33_RIGHT 1 - -MN908947.3 10393 10419 SARS-CoV-2_35_LEFT 1 + -MN908947.3 10465 10491 SARS-CoV-2_34_RIGHT 2 - -MN908947.3 10713 10742 SARS-CoV-2_36_LEFT 2 + -MN908947.3 10785 10810 SARS-CoV-2_35_RIGHT 1 - -MN908947.3 11000 11023 SARS-CoV-2_37_LEFT 1 + -MN908947.3 11092 11116 SARS-CoV-2_36_RIGHT 2 - -MN908947.3 11305 11330 SARS-CoV-2_38_LEFT 2 + -MN908947.3 11388 11414 SARS-CoV-2_37_RIGHT 1 - -MN908947.3 11624 11651 SARS-CoV-2_39_LEFT 1 + -MN908947.3 11689 11720 SARS-CoV-2_38_RIGHT 2 - -MN908947.3 11937 11963 SARS-CoV-2_40_LEFT 2 + -MN908947.3 12011 12033 SARS-CoV-2_39_RIGHT 1 - -MN908947.3 12234 12255 SARS-CoV-2_41_LEFT 1 + -MN908947.3 12317 12339 SARS-CoV-2_40_RIGHT 2 - -MN908947.3 12519 12546 SARS-CoV-2_42_LEFT 2 + -MN908947.3 12618 12643 SARS-CoV-2_41_RIGHT 1 - -MN908947.3 12831 12856 SARS-CoV-2_43_LEFT 1 + -MN908947.3 12895 12920 SARS-CoV-2_42_RIGHT 2 - -MN908947.3 13124 13148 SARS-CoV-2_44_LEFT 2 + -MN908947.3 13218 13240 SARS-CoV-2_43_RIGHT 1 - -MN908947.3 13463 13485 SARS-CoV-2_45_LEFT 1 + -MN908947.3 13506 13528 SARS-CoV-2_44_RIGHT 2 - -MN908947.3 13752 13775 SARS-CoV-2_46_LEFT 2 + -MN908947.3 13833 13859 SARS-CoV-2_45_RIGHT 1 - -MN908947.3 14045 14075 SARS-CoV-2_47_LEFT 1 + -MN908947.3 14120 14144 SARS-CoV-2_46_RIGHT 2 - -MN908947.3 14338 14362 SARS-CoV-2_48_LEFT 2 + -MN908947.3 14428 14457 SARS-CoV-2_47_RIGHT 1 - -MN908947.3 14647 14674 SARS-CoV-2_49_LEFT 1 + -MN908947.3 14717 14743 SARS-CoV-2_48_RIGHT 2 - -MN908947.3 14953 14983 SARS-CoV-2_50_LEFT 2 + -MN908947.3 15023 15050 SARS-CoV-2_49_RIGHT 1 - -MN908947.3 15214 15237 SARS-CoV-2_51_LEFT 1 + -MN908947.3 15336 15358 SARS-CoV-2_50_RIGHT 2 - -MN908947.3 15535 15557 SARS-CoV-2_52_LEFT 2 + -MN908947.3 15596 15619 SARS-CoV-2_51_RIGHT 1 - -MN908947.3 15855 15881 SARS-CoV-2_53_LEFT 1 + -MN908947.3 15917 15941 SARS-CoV-2_52_RIGHT 2 - -MN908947.3 16112 16137 SARS-CoV-2_54_LEFT 2 + -MN908947.3 16239 16260 SARS-CoV-2_53_RIGHT 1 - -MN908947.3 16386 16408 SARS-CoV-2_55_LEFT 1 + -MN908947.3 16483 16508 SARS-CoV-2_54_RIGHT 2 - -MN908947.3 16692 16714 SARS-CoV-2_56_LEFT 2 + -MN908947.3 16767 16796 SARS-CoV-2_55_RIGHT 1 - -MN908947.3 16986 17013 SARS-CoV-2_57_LEFT 1 + -MN908947.3 17082 17105 SARS-CoV-2_56_RIGHT 2 - -MN908947.3 17323 17345 SARS-CoV-2_58_LEFT 2 + -MN908947.3 17381 17405 SARS-CoV-2_57_RIGHT 1 - -MN908947.3 17615 17642 SARS-CoV-2_59_LEFT 1 + -MN908947.3 17688 17711 SARS-CoV-2_58_RIGHT 2 - -MN908947.3 17911 17939 SARS-CoV-2_60_LEFT 2 + -MN908947.3 17997 18022 SARS-CoV-2_59_RIGHT 1 - -MN908947.3 18244 18267 SARS-CoV-2_61_LEFT 1 + -MN908947.3 18307 18328 SARS-CoV-2_60_RIGHT 2 - -MN908947.3 18550 18578 SARS-CoV-2_62_LEFT 2 + -MN908947.3 18624 18652 SARS-CoV-2_61_RIGHT 1 - -MN908947.3 18869 18891 SARS-CoV-2_63_LEFT 1 + -MN908947.3 18936 18961 SARS-CoV-2_62_RIGHT 2 - -MN908947.3 19183 19208 SARS-CoV-2_64_LEFT 2 + -MN908947.3 19252 19277 SARS-CoV-2_63_RIGHT 1 - -MN908947.3 19485 19513 SARS-CoV-2_65_LEFT 1 + -MN908947.3 19558 19586 SARS-CoV-2_64_RIGHT 2 - -MN908947.3 19810 19836 SARS-CoV-2_66_LEFT 2 + -MN908947.3 19877 19901 SARS-CoV-2_65_RIGHT 1 - -MN908947.3 20090 20117 SARS-CoV-2_67_LEFT 1 + -MN908947.3 20186 20216 SARS-CoV-2_66_RIGHT 2 - -MN908947.3 20377 20405 SARS-CoV-2_68_LEFT 2 + -MN908947.3 20472 20497 SARS-CoV-2_67_RIGHT 1 - -MN908947.3 20677 20699 SARS-CoV-2_69_LEFT 1 + -MN908947.3 20766 20792 SARS-CoV-2_68_RIGHT 2 - -MN908947.3 20988 21013 SARS-CoV-2_70_LEFT 2 + -MN908947.3 21050 21080 SARS-CoV-2_69_RIGHT 1 - -MN908947.3 21294 21316 SARS-CoV-2_71_LEFT 1 + -MN908947.3 21358 21387 SARS-CoV-2_70_RIGHT 2 - -MN908947.3 21532 21561 SARS-CoV-2_72_LEFT 2 + -MN908947.3 21675 21700 SARS-CoV-2_71_RIGHT 1 - -MN908947.3 21865 21889 SARS-CoV-2_73_LEFT 1 + -MN908947.3 21904 21933 SARS-CoV-2_72_RIGHT 2 - -MN908947.3 22091 22113 SARS-CoV-2_74_LEFT 2 + -MN908947.3 22247 22274 SARS-CoV-2_73_RIGHT 1 - -MN908947.3 22402 22428 SARS-CoV-2_75_LEFT 1 + -MN908947.3 22474 22503 SARS-CoV-2_74_RIGHT 2 - -MN908947.3 22648 22677 SARS-CoV-2_76_LEFT 2 + -MN908947.3 22742 22774 SARS-CoV-2_76_LEFT_alt1 2 + -MN908947.3 22785 22805 SARS-CoV-2_75_RIGHT 1 - -MN908947.3 22944 22974 SARS-CoV-2_77_LEFT 1 + -MN908947.3 23028 23057 SARS-CoV-2_76_RIGHT 2 - -MN908947.3 23120 23141 SARS-CoV-2_76_RIGHT_alt1 2 - -MN908947.3 23219 23246 SARS-CoV-2_78_LEFT 2 + -MN908947.3 23327 23351 SARS-CoV-2_77_RIGHT 1 - -MN908947.3 23553 23575 SARS-CoV-2_79_LEFT 1 + -MN908947.3 23611 23635 SARS-CoV-2_78_RIGHT 2 - -MN908947.3 23853 23876 SARS-CoV-2_80_LEFT 2 + -MN908947.3 23914 23944 SARS-CoV-2_79_RIGHT_alt1 1 - -MN908947.3 23927 23955 SARS-CoV-2_79_RIGHT 1 - -MN908947.3 24171 24194 SARS-CoV-2_81_LEFT 1 + -MN908947.3 24233 24258 SARS-CoV-2_80_RIGHT 2 - -MN908947.3 24426 24448 SARS-CoV-2_82_LEFT 2 + -MN908947.3 24545 24567 SARS-CoV-2_81_RIGHT 1 - -MN908947.3 24750 24772 SARS-CoV-2_83_LEFT 1 + -MN908947.3 24814 24836 SARS-CoV-2_82_RIGHT 2 - -MN908947.3 25051 25076 SARS-CoV-2_84_LEFT 2 + -MN908947.3 25122 25150 SARS-CoV-2_83_RIGHT 1 - -MN908947.3 25331 25353 SARS-CoV-2_85_LEFT 1 + -MN908947.3 25438 25461 SARS-CoV-2_84_RIGHT 2 - -MN908947.3 25645 25672 SARS-CoV-2_86_LEFT 2 + -MN908947.3 25711 25740 SARS-CoV-2_85_RIGHT 1 - -MN908947.3 25951 25979 SARS-CoV-2_87_LEFT 1 + -MN908947.3 26026 26050 SARS-CoV-2_86_RIGHT 2 - -MN908947.3 26242 26268 SARS-CoV-2_88_LEFT_alt1 2 + -MN908947.3 26255 26277 SARS-CoV-2_88_LEFT 2 + -MN908947.3 26338 26360 SARS-CoV-2_87_RIGHT 1 - -MN908947.3 26564 26587 SARS-CoV-2_89_LEFT 1 + -MN908947.3 26592 26621 SARS-CoV-2_89_LEFT_alt1 1 + -MN908947.3 26635 26661 SARS-CoV-2_88_RIGHT 2 - -MN908947.3 26873 26895 SARS-CoV-2_90_LEFT 2 + -MN908947.3 26956 26979 SARS-CoV-2_89_RIGHT 1 - -MN908947.3 26966 26991 SARS-CoV-2_89_RIGHT_alt1 1 - -MN908947.3 27152 27177 SARS-CoV-2_91_LEFT 1 + -MN908947.3 27218 27251 SARS-CoV-2_90_RIGHT_alt1 2 - -MN908947.3 27256 27283 SARS-CoV-2_90_RIGHT 2 - -MN908947.3 27447 27473 SARS-CoV-2_92_LEFT 2 + -MN908947.3 27534 27560 SARS-CoV-2_91_RIGHT 1 - -MN908947.3 27700 27726 SARS-CoV-2_93_LEFT 1 + -MN908947.3 27826 27855 SARS-CoV-2_92_RIGHT 2 - -MN908947.3 27996 28021 SARS-CoV-2_94_LEFT 2 + -MN908947.3 28082 28104 SARS-CoV-2_93_RIGHT 1 - -MN908947.3 28190 28214 SARS-CoV-2_95_LEFT 1 + -MN908947.3 28394 28416 SARS-CoV-2_94_RIGHT 2 - -MN908947.3 28512 28536 SARS-CoV-2_96_LEFT 2 + -MN908947.3 28572 28598 SARS-CoV-2_95_RIGHT 1 - -MN908947.3 28827 28849 SARS-CoV-2_97_LEFT 1 + -MN908947.3 28893 28914 SARS-CoV-2_96_RIGHT 2 - -MN908947.3 29136 29161 SARS-CoV-2_98_LEFT 2 + -MN908947.3 29206 29227 SARS-CoV-2_97_RIGHT 1 - -MN908947.3 29452 29475 SARS-CoV-2_99_LEFT 1 + -MN908947.3 29512 29534 SARS-CoV-2_98_RIGHT 2 - -MN908947.3 29827 29854 SARS-CoV-2_99_RIGHT 1 - diff --git a/sars-cov-2/artic/v4/info.yml b/sars-cov-2/artic/v4/info.yml deleted file mode 100644 index 40fff48..0000000 --- a/sars-cov-2/artic/v4/info.yml +++ /dev/null @@ -1,16 +0,0 @@ -schema_version: 0.9.0 -name: artic-v4 -organism: sars-cov-2 -aliases: -- ARTIC/V4 -developers: -- organisation_name: ARTIC network - home_page: https://artic.network/ -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v4 -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -derived_from: artic-v3 -primer_scheme_status: DEPRECATED -primer_checksum: primaschema:2df872deb2123004 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/artic/v4/primer.bed b/sars-cov-2/artic/v4/primer.bed deleted file mode 100644 index c2149c0..0000000 --- a/sars-cov-2/artic/v4/primer.bed +++ /dev/null @@ -1,198 +0,0 @@ -MN908947.3 25 50 SARS-CoV-2_1_LEFT 1 + AACAAACCAACCAACTTTCGATCTC -MN908947.3 408 431 SARS-CoV-2_1_RIGHT 1 - CTTCTACTAAGCCACAAGTGCCA -MN908947.3 324 344 SARS-CoV-2_2_LEFT 2 + TTTACAGGTTCGCGACGTGC -MN908947.3 705 727 SARS-CoV-2_2_RIGHT 2 - ATAAGGATCAGTGCCAAGCTCG -MN908947.3 644 666 SARS-CoV-2_3_LEFT 1 + GTAATAAAGGAGCTGGTGGCCA -MN908947.3 1017 1044 SARS-CoV-2_3_RIGHT 1 - GCCAATTTAATTTCAAAAGGTGTCTGC -MN908947.3 944 966 SARS-CoV-2_4_LEFT 2 + GTGTATACTGCTGCCGTGAACA -MN908947.3 1337 1362 SARS-CoV-2_4_RIGHT 2 - ACAACAGCATTTTGGGGTAAGTAAC -MN908947.3 1245 1266 SARS-CoV-2_5_LEFT 1 + TGAAACTTCATGGCAGACGGG -MN908947.3 1623 1650 SARS-CoV-2_5_RIGHT 1 - TTGATGTTGACTTTCTCTTTTTGGAGT -MN908947.3 1540 1562 SARS-CoV-2_6_LEFT 2 + CGTGCTAGCGCTAACATAGGTT -MN908947.3 1925 1948 SARS-CoV-2_6_RIGHT 2 - AACACGCACAGAATTTTGAGCAG -MN908947.3 1851 1875 SARS-CoV-2_7_LEFT 1 + ACTGAGTCCTCTTTATGCATTTGC -MN908947.3 2228 2250 SARS-CoV-2_7_RIGHT 1 - CCACCGACAATTTCACAAGCAC -MN908947.3 2154 2180 SARS-CoV-2_8_LEFT 2 + GCTTGAAGAGAAGTTTAAGGAAGGTG -MN908947.3 2544 2571 SARS-CoV-2_8_RIGHT 2 - GGTTGTTCTAATGGTTGTAAATCACCA -MN908947.3 2483 2508 SARS-CoV-2_9_LEFT 1 + TCTTCTTAGAGGGAGAAACACTTCC -MN908947.3 2861 2885 SARS-CoV-2_9_RIGHT 1 - CACAGGCGAACTCATTTACTTCTG -MN908947.3 2826 2850 SARS-CoV-2_10_LEFT 2 + TGAGAAGTGCTCTGCCTATACAGT -MN908947.3 3183 3210 SARS-CoV-2_10_RIGHT 2 - TCATCTAACCAATCTTCTTCTTGCTCT -MN908947.3 3078 3102 SARS-CoV-2_11_LEFT 1 + AGAAGAGTTTGAGCCATCAACTCA -MN908947.3 3470 3492 SARS-CoV-2_11_RIGHT 1 - TTTAAGGCTCCTGCAACACCTC -MN908947.3 3390 3412 SARS-CoV-2_12_LEFT 2 + TGCAGACATTGTGGAAGAAGCT -MN908947.3 3769 3794 SARS-CoV-2_12_RIGHT 2 - CAGCTAAGTAGACATTTGTGCGAAC -MN908947.3 3683 3705 SARS-CoV-2_13_LEFT 1 + AGCACGAAGTTCTACTTGCACC -MN908947.3 4067 4093 SARS-CoV-2_13_RIGHT 1 - GATGTCAATGTCACTAACAAGAGTGG -MN908947.3 3992 4018 SARS-CoV-2_14_LEFT 2 + TGGAAGAAACTAAGTTCCTCACAGAA -MN908947.3 4387 4409 SARS-CoV-2_14_RIGHT 2 - CATGTGCAAGCATTTCTCGCAA -MN908947.3 4312 4339 SARS-CoV-2_15_LEFT 1 + AAAAGTGCCTTTTACATTCTACCATCT -MN908947.3 4685 4710 SARS-CoV-2_15_RIGHT 1 - GCATCAGGTGAAGAAACAGAAACTG -MN908947.3 4620 4648 SARS-CoV-2_16_LEFT 2 + TGTAACACATGGCTTAAATTTGGAAGAA -MN908947.3 4995 5017 SARS-CoV-2_16_RIGHT 2 - CACAACTTGCGTGTGGAGGTTA -MN908947.3 4923 4953 SARS-CoV-2_17_LEFT 1 + TGACAATCTTAAGACACTTCTTTCTTTGAG -MN908947.3 5302 5331 SARS-CoV-2_17_RIGHT 1 - TTCAACTCTATTTGTTGGAGTGTTAACAA -MN908947.3 5230 5259 SARS-CoV-2_18_LEFT 2 + TGGAAATACCCACAAGTTAATGGTTTAAC -MN908947.3 5620 5643 SARS-CoV-2_18_RIGHT 2 - GCTTGTTTACCACACGTACAAGG -MN908947.3 5561 5584 SARS-CoV-2_19_LEFT 1 + AAGCTGTTATGTACATGGGCACA -MN908947.3 5932 5957 SARS-CoV-2_19_RIGHT 1 - TGTCCAACTTAGGGTCAATTTCTGT -MN908947.3 5867 5894 SARS-CoV-2_20_LEFT 2 + ACAAAGAAAACAGTTACACAACAACCA -MN908947.3 6247 6272 SARS-CoV-2_20_RIGHT 2 - ACGTGGCTTTATTAGTTGCATTGTT -MN908947.3 6184 6210 SARS-CoV-2_21_LEFT 1 + CACTACACACCCTCTTTTAAGAAAGG -MN908947.3 6553 6582 SARS-CoV-2_21_RIGHT 1 - GTAAGACTAGAATTGTCTACATAAGCAGC -MN908947.3 6478 6507 SARS-CoV-2_22_LEFT 2 + GTAGGAGACATTATACTTAAACCAGCAAA -MN908947.3 6859 6885 SARS-CoV-2_22_RIGHT 2 - CCGACACTCTTAACAGTATTCTTTGC -MN908947.3 6747 6776 SARS-CoV-2_23_LEFT 1 + AAACCGTGTTTGTACTAATTATATGCCTT -MN908947.3 7122 7148 SARS-CoV-2_23_RIGHT 1 - AACCACTAAGACAAACACTACAAGGT -MN908947.3 7057 7084 SARS-CoV-2_24_LEFT 2 + GGTTACAGAGAAGGCTATTTGAACTCT -MN908947.3 7440 7467 SARS-CoV-2_24_RIGHT 2 - ACAACATGCACATAACTTTTCCATACA -MN908947.3 7381 7403 SARS-CoV-2_25_LEFT 1 + CAAATGGCCCCGATTTCAGCTA -MN908947.3 7747 7770 SARS-CoV-2_25_RIGHT 1 - TGGATGGAACCATTCTTCACTGT -MN908947.3 7672 7695 SARS-CoV-2_26_LEFT 2 + GCGAGAGACTTGTCACTACAGTT -MN908947.3 8063 8092 SARS-CoV-2_26_RIGHT 2 - GAGTTTTTCCATTGGTACGTTAAAAGTTG -MN908947.3 7997 8019 SARS-CoV-2_27_LEFT 1 + CTGATGTTGGTGATAGTGCGGA -MN908947.3 8370 8395 SARS-CoV-2_27_RIGHT 1 - AGCAATGTTGTGACTTTTTGCTACC -MN908947.3 8304 8326 SARS-CoV-2_28_LEFT 2 + TGAAAACATGACACCCCGTGAC -MN908947.3 8691 8714 SARS-CoV-2_28_RIGHT 2 - TGACACCACCATCAATAGCCTTG -MN908947.3 8596 8619 SARS-CoV-2_29_LEFT 1 + CTTGTGTTCCTTTTTGTTGCTGC -MN908947.3 8990 9013 SARS-CoV-2_29_RIGHT 1 - AGCCAAAACACAAGCTGATGTTG -MN908947.3 8919 8944 SARS-CoV-2_30_LEFT 2 + ACCTAGAGTTTTTAGTGCAGTTGGT -MN908947.3 9306 9329 SARS-CoV-2_30_RIGHT 2 - CTACACCACAGAAAACTCCTGGT -MN908947.3 9168 9192 SARS-CoV-2_31_LEFT 1 + CCTTGAAGGTTCTGTTAGAGTGGT -MN908947.3 9535 9564 SARS-CoV-2_31_RIGHT 1 - AATGAGTAAACTGGTGTTAAACAGAGTAC -MN908947.3 9470 9497 SARS-CoV-2_32_LEFT 2 + GAGCTTTTGGTGAATACAGTCATGTAG -MN908947.3 9842 9866 SARS-CoV-2_32_RIGHT 2 - GAGGTAATAGCACATCACTACGCA -MN908947.3 9782 9805 SARS-CoV-2_33_LEFT 1 + GTACTTTTGAAGAAGCTGCGCTG -MN908947.3 10150 10176 SARS-CoV-2_33_RIGHT 1 - TGTCTTGGACAGTAAACTACGTCATC -MN908947.3 10076 10099 SARS-CoV-2_34_LEFT 2 + TCCCATCTGGTAAAGTTGAGGGT -MN908947.3 10465 10491 SARS-CoV-2_34_RIGHT 2 - CCACATGAACCATTAAGGAATGAACC -MN908947.3 10393 10419 SARS-CoV-2_35_LEFT 1 + GTGTTAGCTTGTTACAATGGTTCACC -MN908947.3 10785 10810 SARS-CoV-2_35_RIGHT 1 - AGGTCCTAGTATGTCAACATGGTCT -MN908947.3 10713 10742 SARS-CoV-2_36_LEFT 2 + CAATCGATTTACCACAACTCTTAATGACT -MN908947.3 11092 11116 SARS-CoV-2_36_RIGHT 2 - ACCCATAGCAAAAGGTAAAAAGGC -MN908947.3 11000 11023 SARS-CoV-2_37_LEFT 1 + CACACCACTGGTTGTTACTCACA -MN908947.3 11388 11414 SARS-CoV-2_37_RIGHT 1 - GTGTCAAGACATTCATAAGTGTCCAC -MN908947.3 11305 11330 SARS-CoV-2_38_LEFT 2 + GACTGTGTTATGTATGCATCAGCTG -MN908947.3 11689 11720 SARS-CoV-2_38_RIGHT 2 - CCTGTGTAGAAACTAAGTAATCATAAACACC -MN908947.3 11624 11651 SARS-CoV-2_39_LEFT 1 + GCTATTTTTGTACTTGTTACTTTGGCC -MN908947.3 12011 12033 SARS-CoV-2_39_RIGHT 1 - CCCTGCATGGAAAGCAAAACAG -MN908947.3 11937 11963 SARS-CoV-2_40_LEFT 2 + TGTCCAGTTACACAATGACATTCTCT -MN908947.3 12317 12339 SARS-CoV-2_40_RIGHT 2 - ACTTTTGCCCTCTTGTCCTCAG -MN908947.3 12234 12255 SARS-CoV-2_41_LEFT 1 + ATTTGACCGTGATGCAGCCAT -MN908947.3 12618 12643 SARS-CoV-2_41_RIGHT 1 - AAGAGGCCATGCTAAATTAGGTGAA -MN908947.3 12519 12546 SARS-CoV-2_42_LEFT 2 + TGGTACAACATTTACTTATGCATCAGC -MN908947.3 12895 12920 SARS-CoV-2_42_RIGHT 2 - TGTCTGTAACAAACCTACAAGGTGG -MN908947.3 12831 12856 SARS-CoV-2_43_LEFT 1 + GGATTTGAAATGGGCTAGATTCCCT -MN908947.3 13218 13240 SARS-CoV-2_43_RIGHT 1 - CGATGCACCACCAAAGGATTCT -MN908947.3 13124 13148 SARS-CoV-2_44_LEFT 2 + GGGGACAACCAATCACTAATTGTG -MN908947.3 13506 13528 SARS-CoV-2_44_RIGHT 2 - CATCAGTACTAGTGCCTGTGCC -MN908947.3 13463 13485 SARS-CoV-2_45_LEFT 1 + TAAACGGGTTTGCGGTGTAAGT -MN908947.3 13833 13859 SARS-CoV-2_45_RIGHT 1 - TCACAATTACCTTCATCAAAATGCCT -MN908947.3 13752 13775 SARS-CoV-2_46_LEFT 2 + AGAATAGACGGTGACATGGTACC -MN908947.3 14120 14144 SARS-CoV-2_46_RIGHT 2 - TCTACAACAGGAACTCCACTACCT -MN908947.3 14045 14075 SARS-CoV-2_47_LEFT 1 + TGGTGTACTGACATTAGATAATCAAGATCT -MN908947.3 14428 14457 SARS-CoV-2_47_RIGHT 1 - TGGAACACCATCAACAAATATTTTTCTCA -MN908947.3 14338 14362 SARS-CoV-2_48_LEFT 2 + ACTGTTTGGATGACAGATGCATTC -MN908947.3 14717 14743 SARS-CoV-2_48_RIGHT 2 - CAGAACTTCCTTCCTTAAAGAAACCC -MN908947.3 14647 14674 SARS-CoV-2_49_LEFT 1 + ACAATGTTGCTTTTCAAACTGTCAAAC -MN908947.3 15023 15050 SARS-CoV-2_49_RIGHT 1 - GGGATGACATTACGTTTTGTATATGCG -MN908947.3 14953 14983 SARS-CoV-2_50_LEFT 2 + CATTTAATAAATGGGGTAAGGCTAGACTTT -MN908947.3 15336 15358 SARS-CoV-2_50_RIGHT 2 - GAGCAAGAACAAGTGAGGCCAT -MN908947.3 15214 15237 SARS-CoV-2_51_LEFT 1 + GCAAATTCTATGGTGGTTGGCAC -MN908947.3 15596 15619 SARS-CoV-2_51_RIGHT 1 - GTCTGTGTTGTAAATTGCGGACA -MN908947.3 15535 15557 SARS-CoV-2_52_LEFT 2 + CTGTCACGGCCAATGTTAATGC -MN908947.3 15917 15941 SARS-CoV-2_52_RIGHT 2 - GGATCTGGGTAAGGAAGGTACACA -MN908947.3 15855 15881 SARS-CoV-2_53_LEFT 1 + ACTAAAGGACCTCATGAATTTTGCTC -MN908947.3 16239 16260 SARS-CoV-2_53_RIGHT 1 - GCAAAGAACACAAGCCCCAAC -MN908947.3 16112 16137 SARS-CoV-2_54_LEFT 2 + ACATGATGAGTTAACAGGACACATG -MN908947.3 16483 16508 SARS-CoV-2_54_RIGHT 2 - CCAAAAACTTGTCCATTAGCACACA -MN908947.3 16386 16408 SARS-CoV-2_55_LEFT 1 + AATGCTCCAGGTTGTGATGTCA -MN908947.3 16767 16796 SARS-CoV-2_55_RIGHT 1 - ACACGATAACCAGTAAAGACATAATTTCG -MN908947.3 16692 16714 SARS-CoV-2_56_LEFT 2 + ACTGTACGTGAAGTGCTGTCTG -MN908947.3 17082 17105 SARS-CoV-2_56_RIGHT 2 - TGACTCTTACCAGTACCAGGTGG -MN908947.3 16986 17013 SARS-CoV-2_57_LEFT 1 + GGCTTATACCCAACACTCAATATCTCA -MN908947.3 17381 17405 SARS-CoV-2_57_RIGHT 1 - CTGGCATTGACAACACTCAAATCA -MN908947.3 17323 17345 SARS-CoV-2_58_LEFT 2 + TGCCTGAGACGACAGCAGATAT -MN908947.3 17688 17711 SARS-CoV-2_58_RIGHT 2 - TGTGGCCTGTTAATTGCAGATGA -MN908947.3 17615 17642 SARS-CoV-2_59_LEFT 1 + GCTTAAAGCACATAAAGACAAATCAGC -MN908947.3 17997 18022 SARS-CoV-2_59_RIGHT 1 - TCCTACGTGGAATTTCAAGACTTGT -MN908947.3 17911 17939 SARS-CoV-2_60_LEFT 2 + ACAGATTTAATGTTGCTATTACCAGAGC -MN908947.3 18307 18328 SARS-CoV-2_60_RIGHT 2 - TAGCATGACACCCCTCGACAT -MN908947.3 18244 18267 SARS-CoV-2_61_LEFT 1 + ACCCTAACATGTTTATCACCCGC -MN908947.3 18624 18652 SARS-CoV-2_61_RIGHT 1 - GCTCAGGTCCTATTTTCACAAAATACTT -MN908947.3 18550 18578 SARS-CoV-2_62_LEFT 2 + GTGACACACTTAAAAATCTCTCTGACAG -MN908947.3 18936 18961 SARS-CoV-2_62_RIGHT 2 - CCGCATTAATCTTCAGTTCATCACC -MN908947.3 18869 18891 SARS-CoV-2_63_LEFT 1 + TAGGTGTCTAGCTGTCCACGAG -MN908947.3 19252 19277 SARS-CoV-2_63_RIGHT 1 - CCAGGCAAGTTAAGGTTAGATAGCA -MN908947.3 19183 19208 SARS-CoV-2_64_LEFT 2 + GCCTATTTTGGAATTGCAATGTCGA -MN908947.3 19558 19586 SARS-CoV-2_64_RIGHT 2 - GTATCAAATTGTTTGTAAACCCACAAGC -MN908947.3 19485 19513 SARS-CoV-2_65_LEFT 1 + GTCTGTAGACATCATGCTAATGAGTACA -MN908947.3 19877 19901 SARS-CoV-2_65_RIGHT 1 - GCTGGAGCATCTCTTTTGTAGTCC -MN908947.3 19810 19836 SARS-CoV-2_66_LEFT 2 + AACCAGTACCAGAGGTGAAAATACTC -MN908947.3 20186 20216 SARS-CoV-2_66_RIGHT 2 - TTTCTACTCTGAGTAAAGTAAGTTTCAGGT -MN908947.3 20090 20117 SARS-CoV-2_67_LEFT 1 + CAAACAAGCTAGTCTTAATGGAGTCAC -MN908947.3 20472 20497 SARS-CoV-2_67_RIGHT 1 - AACACACACACTTAGATGAACCTGT -MN908947.3 20377 20405 SARS-CoV-2_68_LEFT 2 + GACTAGCTAAACGTTTTAAGGAATCACC -MN908947.3 20766 20792 SARS-CoV-2_68_RIGHT 2 - GCGACATTCATCATTATGCCTTTAGG -MN908947.3 20677 20699 SARS-CoV-2_69_LEFT 1 + CGGGTGTTGCTATGCCTAATCT -MN908947.3 21050 21080 SARS-CoV-2_69_RIGHT 1 - TTTGTAACATTTTTAGTCTTAGGGTCGTAC -MN908947.3 20988 21013 SARS-CoV-2_70_LEFT 2 + TTGATTGGTGATTGTGCAACTGTAC -MN908947.3 21358 21387 SARS-CoV-2_70_RIGHT 2 - AGAATAGGAAGACAACTGAATTGGATTTG -MN908947.3 21294 21316 SARS-CoV-2_71_LEFT 1 + GGCAAACCACGCGAACAAATAG -MN908947.3 21675 21700 SARS-CoV-2_71_RIGHT 1 - TGAGGATCTGAAAACTTTGTCAGGG -MN908947.3 21532 21561 SARS-CoV-2_72_LEFT 2 + GTGATGTTCTTGTTAACAACTAAACGAAC -MN908947.3 21904 21933 SARS-CoV-2_72_RIGHT 2 - GTAGCGTTATTAACAATAAGTAGGGACTG -MN908947.3 21865 21889 SARS-CoV-2_73_LEFT 1 + AGAGGCTGGATTTTTGGTACTACT -MN908947.3 22247 22274 SARS-CoV-2_73_RIGHT 1 - ACCTAGTGATGTTAATACCTATTGGCA -MN908947.3 22091 22113 SARS-CoV-2_74_LEFT 2 + TGGACCTTGAAGGAAAACAGGG -MN908947.3 22474 22503 SARS-CoV-2_74_RIGHT 2 - TGATAGATTCCTTTTTCTACAGTGAAGGA -MN908947.3 22402 22428 SARS-CoV-2_75_LEFT 1 + GAAAATGGAACCATTACAGATGCTGT -MN908947.3 22785 22805 SARS-CoV-2_75_RIGHT 1 - TTTGCCCTGGAGCGATTTGT -MN908947.3 22648 22677 SARS-CoV-2_76_LEFT 2 + GCTGATTATTCTGTCCTATATAATTCCGC -MN908947.3 23028 23057 SARS-CoV-2_76_RIGHT 2 - GTTGGAAACCATATGATTGTAAAGGAAAG -MN908947.3 22944 22974 SARS-CoV-2_77_LEFT 1 + CAAACCTTTTGAGAGAGATATTTCAACTGA -MN908947.3 23327 23351 SARS-CoV-2_77_RIGHT 1 - CACTGACACCACCAAAAGAACATG -MN908947.3 23219 23246 SARS-CoV-2_78_LEFT 2 + CTGAGTCTAACAAAAAGTTTCTGCCTT -MN908947.3 23611 23635 SARS-CoV-2_78_RIGHT 2 - GGATTGACTAGCTACACTACGTGC -MN908947.3 23553 23575 SARS-CoV-2_79_LEFT 1 + ACCCATTGGTGCAGGTATATGC -MN908947.3 23927 23955 SARS-CoV-2_79_RIGHT 1 - CCAAAATCTTTAATTGGTGGTGTTTTGT -MN908947.3 23853 23876 SARS-CoV-2_80_LEFT 2 + CCGTGCTTTAACTGGAATAGCTG -MN908947.3 24233 24258 SARS-CoV-2_80_RIGHT 2 - GCAAATGGTATTTGTAATGCAGCAC -MN908947.3 24171 24194 SARS-CoV-2_81_LEFT 1 + TGCTCAATACACTTCTGCACTGT -MN908947.3 24545 24567 SARS-CoV-2_81_RIGHT 1 - TGAAGTCTGCCTGTGATCAACC -MN908947.3 24426 24448 SARS-CoV-2_82_LEFT 2 + TGCACAAGCTTTAAACACGCTT -MN908947.3 24814 24836 SARS-CoV-2_82_RIGHT 2 - CACGAGGAAAGTGTGCTTTTCC -MN908947.3 24750 24772 SARS-CoV-2_83_LEFT 1 + GCATGTGACTTATGTCCCTGCA -MN908947.3 25122 25150 SARS-CoV-2_83_RIGHT 1 - AGATTCATTTAAATTCTTGGCAACCTCA -MN908947.3 25051 25076 SARS-CoV-2_84_LEFT 2 + GTTGATTTAGGTGACATCTCTGGCA -MN908947.3 25438 25461 SARS-CoV-2_84_RIGHT 2 - AGCATCCTTGATTTCACCTTGCT -MN908947.3 25331 25353 SARS-CoV-2_85_LEFT 1 + ATGAAGACGACTCTGAGCCAGT -MN908947.3 25711 25740 SARS-CoV-2_85_RIGHT 1 - CTGCAAGAAGTAGACTAAAGCATAAAGAT -MN908947.3 25645 25672 SARS-CoV-2_86_LEFT 2 + TGTTGTTTGTAACAGTTTACTCACACC -MN908947.3 26026 26050 SARS-CoV-2_86_RIGHT 2 - TCAATTGAGTTGAGTACAGCTGGT -MN908947.3 25951 25979 SARS-CoV-2_87_LEFT 1 + GTGGTTATACTGAAAAATGGGAATCTGG -MN908947.3 26338 26360 SARS-CoV-2_87_RIGHT 1 - AATCGAAGCGCAGTAAGGATGG -MN908947.3 26255 26277 SARS-CoV-2_88_LEFT 2 + CGTTTCGGAAGAGACAGGTACG -MN908947.3 26635 26661 SARS-CoV-2_88_RIGHT 2 - ACAAAAACCTATTCCTGTTGGCATAG -MN908947.3 26564 26587 SARS-CoV-2_89_LEFT 1 + AAGCTCCTTGAACAATGGAACCT -MN908947.3 26956 26979 SARS-CoV-2_89_RIGHT 1 - CAGCAATACGAAGATGTCCACGA -MN908947.3 26873 26895 SARS-CoV-2_90_LEFT 2 + ATTCTTCTCAACGTGCCACTCC -MN908947.3 27256 27283 SARS-CoV-2_90_RIGHT 2 - TCCAAATGGAAACTTTAAAAGTCCTCA -MN908947.3 27152 27177 SARS-CoV-2_91_LEFT 1 + TCCAGTAGCAGTGACAATATTGCTT -MN908947.3 27534 27560 SARS-CoV-2_91_RIGHT 1 - AGTGCAAATTTGTTATCAGCTAGAGG -MN908947.3 27447 27473 SARS-CoV-2_92_LEFT 2 + CACTACCAAGAGTGTGTTAGAGGTAC -MN908947.3 27826 27855 SARS-CoV-2_92_RIGHT 2 - GTTCAAGTGAGAACCAAAAGATAATAAGC -MN908947.3 27700 27726 SARS-CoV-2_93_LEFT 1 + TTGTTGCGGCAATAGTGTTTATAACA -MN908947.3 28082 28104 SARS-CoV-2_93_RIGHT 1 - TGGGTGATTTAGAACCAGCCTC -MN908947.3 27996 28021 SARS-CoV-2_94_LEFT 2 + ACCCGTGTCCTATTCACTTCTATTC -MN908947.3 28394 28416 SARS-CoV-2_94_RIGHT 2 - TTATTGGGTAAACCTTGGGGCC -MN908947.3 28190 28214 SARS-CoV-2_95_LEFT 1 + GTGCGTTGTTCGTTCTATGAAGAC -MN908947.3 28572 28598 SARS-CoV-2_95_RIGHT 1 - ACCATCTTGGACTGAGATCTTTCATT -MN908947.3 28512 28536 SARS-CoV-2_96_LEFT 2 + AGATGACCAAATTGGCTACTACCG -MN908947.3 28893 28914 SARS-CoV-2_96_RIGHT 2 - CCATTGCCAGCCATTCTAGCA -MN908947.3 28827 28849 SARS-CoV-2_97_LEFT 1 + TTCCTCATCACGTAGTCGCAAC -MN908947.3 29206 29227 SARS-CoV-2_97_RIGHT 1 - CGACATTCCGAAGAACGCTGA -MN908947.3 29136 29161 SARS-CoV-2_98_LEFT 2 + CCAGGAACTAATCAGACAAGGAACT -MN908947.3 29512 29534 SARS-CoV-2_98_RIGHT 2 - TTTAGGCCTGAGTTGAGTCAGC -MN908947.3 29452 29475 SARS-CoV-2_99_LEFT 1 + CTTCTTCCTGCTGCAGATTTGGA -MN908947.3 29827 29854 SARS-CoV-2_99_RIGHT 1 - GCTATTAAAATCACATGGGGATAGCAC diff --git a/sars-cov-2/artic/v4/scheme.bed b/sars-cov-2/artic/v4/scheme.bed deleted file mode 100644 index 5a0a707..0000000 --- a/sars-cov-2/artic/v4/scheme.bed +++ /dev/null @@ -1,198 +0,0 @@ -MN908947.3 25 50 SARS-CoV-2_1_LEFT 1 + -MN908947.3 408 431 SARS-CoV-2_1_RIGHT 1 - -MN908947.3 324 344 SARS-CoV-2_2_LEFT 2 + -MN908947.3 705 727 SARS-CoV-2_2_RIGHT 2 - -MN908947.3 644 666 SARS-CoV-2_3_LEFT 1 + -MN908947.3 1017 1044 SARS-CoV-2_3_RIGHT 1 - -MN908947.3 944 966 SARS-CoV-2_4_LEFT 2 + -MN908947.3 1337 1362 SARS-CoV-2_4_RIGHT 2 - -MN908947.3 1245 1266 SARS-CoV-2_5_LEFT 1 + -MN908947.3 1623 1650 SARS-CoV-2_5_RIGHT 1 - -MN908947.3 1540 1562 SARS-CoV-2_6_LEFT 2 + -MN908947.3 1925 1948 SARS-CoV-2_6_RIGHT 2 - -MN908947.3 1851 1875 SARS-CoV-2_7_LEFT 1 + -MN908947.3 2228 2250 SARS-CoV-2_7_RIGHT 1 - -MN908947.3 2154 2180 SARS-CoV-2_8_LEFT 2 + -MN908947.3 2544 2571 SARS-CoV-2_8_RIGHT 2 - -MN908947.3 2483 2508 SARS-CoV-2_9_LEFT 1 + -MN908947.3 2861 2885 SARS-CoV-2_9_RIGHT 1 - -MN908947.3 2826 2850 SARS-CoV-2_10_LEFT 2 + -MN908947.3 3183 3210 SARS-CoV-2_10_RIGHT 2 - -MN908947.3 3078 3102 SARS-CoV-2_11_LEFT 1 + -MN908947.3 3470 3492 SARS-CoV-2_11_RIGHT 1 - -MN908947.3 3390 3412 SARS-CoV-2_12_LEFT 2 + -MN908947.3 3769 3794 SARS-CoV-2_12_RIGHT 2 - -MN908947.3 3683 3705 SARS-CoV-2_13_LEFT 1 + -MN908947.3 4067 4093 SARS-CoV-2_13_RIGHT 1 - -MN908947.3 3992 4018 SARS-CoV-2_14_LEFT 2 + -MN908947.3 4387 4409 SARS-CoV-2_14_RIGHT 2 - -MN908947.3 4312 4339 SARS-CoV-2_15_LEFT 1 + -MN908947.3 4685 4710 SARS-CoV-2_15_RIGHT 1 - -MN908947.3 4620 4648 SARS-CoV-2_16_LEFT 2 + -MN908947.3 4995 5017 SARS-CoV-2_16_RIGHT 2 - -MN908947.3 4923 4953 SARS-CoV-2_17_LEFT 1 + -MN908947.3 5302 5331 SARS-CoV-2_17_RIGHT 1 - -MN908947.3 5230 5259 SARS-CoV-2_18_LEFT 2 + -MN908947.3 5620 5643 SARS-CoV-2_18_RIGHT 2 - -MN908947.3 5561 5584 SARS-CoV-2_19_LEFT 1 + -MN908947.3 5932 5957 SARS-CoV-2_19_RIGHT 1 - -MN908947.3 5867 5894 SARS-CoV-2_20_LEFT 2 + -MN908947.3 6247 6272 SARS-CoV-2_20_RIGHT 2 - -MN908947.3 6184 6210 SARS-CoV-2_21_LEFT 1 + -MN908947.3 6553 6582 SARS-CoV-2_21_RIGHT 1 - -MN908947.3 6478 6507 SARS-CoV-2_22_LEFT 2 + -MN908947.3 6859 6885 SARS-CoV-2_22_RIGHT 2 - -MN908947.3 6747 6776 SARS-CoV-2_23_LEFT 1 + -MN908947.3 7122 7148 SARS-CoV-2_23_RIGHT 1 - -MN908947.3 7057 7084 SARS-CoV-2_24_LEFT 2 + -MN908947.3 7440 7467 SARS-CoV-2_24_RIGHT 2 - -MN908947.3 7381 7403 SARS-CoV-2_25_LEFT 1 + -MN908947.3 7747 7770 SARS-CoV-2_25_RIGHT 1 - -MN908947.3 7672 7695 SARS-CoV-2_26_LEFT 2 + -MN908947.3 8063 8092 SARS-CoV-2_26_RIGHT 2 - -MN908947.3 7997 8019 SARS-CoV-2_27_LEFT 1 + -MN908947.3 8370 8395 SARS-CoV-2_27_RIGHT 1 - -MN908947.3 8304 8326 SARS-CoV-2_28_LEFT 2 + -MN908947.3 8691 8714 SARS-CoV-2_28_RIGHT 2 - -MN908947.3 8596 8619 SARS-CoV-2_29_LEFT 1 + -MN908947.3 8990 9013 SARS-CoV-2_29_RIGHT 1 - -MN908947.3 8919 8944 SARS-CoV-2_30_LEFT 2 + -MN908947.3 9306 9329 SARS-CoV-2_30_RIGHT 2 - -MN908947.3 9168 9192 SARS-CoV-2_31_LEFT 1 + -MN908947.3 9535 9564 SARS-CoV-2_31_RIGHT 1 - -MN908947.3 9470 9497 SARS-CoV-2_32_LEFT 2 + -MN908947.3 9842 9866 SARS-CoV-2_32_RIGHT 2 - -MN908947.3 9782 9805 SARS-CoV-2_33_LEFT 1 + -MN908947.3 10150 10176 SARS-CoV-2_33_RIGHT 1 - -MN908947.3 10076 10099 SARS-CoV-2_34_LEFT 2 + -MN908947.3 10465 10491 SARS-CoV-2_34_RIGHT 2 - -MN908947.3 10393 10419 SARS-CoV-2_35_LEFT 1 + -MN908947.3 10785 10810 SARS-CoV-2_35_RIGHT 1 - -MN908947.3 10713 10742 SARS-CoV-2_36_LEFT 2 + -MN908947.3 11092 11116 SARS-CoV-2_36_RIGHT 2 - -MN908947.3 11000 11023 SARS-CoV-2_37_LEFT 1 + -MN908947.3 11388 11414 SARS-CoV-2_37_RIGHT 1 - -MN908947.3 11305 11330 SARS-CoV-2_38_LEFT 2 + -MN908947.3 11689 11720 SARS-CoV-2_38_RIGHT 2 - -MN908947.3 11624 11651 SARS-CoV-2_39_LEFT 1 + -MN908947.3 12011 12033 SARS-CoV-2_39_RIGHT 1 - -MN908947.3 11937 11963 SARS-CoV-2_40_LEFT 2 + -MN908947.3 12317 12339 SARS-CoV-2_40_RIGHT 2 - -MN908947.3 12234 12255 SARS-CoV-2_41_LEFT 1 + -MN908947.3 12618 12643 SARS-CoV-2_41_RIGHT 1 - -MN908947.3 12519 12546 SARS-CoV-2_42_LEFT 2 + -MN908947.3 12895 12920 SARS-CoV-2_42_RIGHT 2 - -MN908947.3 12831 12856 SARS-CoV-2_43_LEFT 1 + -MN908947.3 13218 13240 SARS-CoV-2_43_RIGHT 1 - -MN908947.3 13124 13148 SARS-CoV-2_44_LEFT 2 + -MN908947.3 13506 13528 SARS-CoV-2_44_RIGHT 2 - -MN908947.3 13463 13485 SARS-CoV-2_45_LEFT 1 + -MN908947.3 13833 13859 SARS-CoV-2_45_RIGHT 1 - -MN908947.3 13752 13775 SARS-CoV-2_46_LEFT 2 + -MN908947.3 14120 14144 SARS-CoV-2_46_RIGHT 2 - -MN908947.3 14045 14075 SARS-CoV-2_47_LEFT 1 + -MN908947.3 14428 14457 SARS-CoV-2_47_RIGHT 1 - -MN908947.3 14338 14362 SARS-CoV-2_48_LEFT 2 + -MN908947.3 14717 14743 SARS-CoV-2_48_RIGHT 2 - -MN908947.3 14647 14674 SARS-CoV-2_49_LEFT 1 + -MN908947.3 15023 15050 SARS-CoV-2_49_RIGHT 1 - -MN908947.3 14953 14983 SARS-CoV-2_50_LEFT 2 + -MN908947.3 15336 15358 SARS-CoV-2_50_RIGHT 2 - -MN908947.3 15214 15237 SARS-CoV-2_51_LEFT 1 + -MN908947.3 15596 15619 SARS-CoV-2_51_RIGHT 1 - -MN908947.3 15535 15557 SARS-CoV-2_52_LEFT 2 + -MN908947.3 15917 15941 SARS-CoV-2_52_RIGHT 2 - -MN908947.3 15855 15881 SARS-CoV-2_53_LEFT 1 + -MN908947.3 16239 16260 SARS-CoV-2_53_RIGHT 1 - -MN908947.3 16112 16137 SARS-CoV-2_54_LEFT 2 + -MN908947.3 16483 16508 SARS-CoV-2_54_RIGHT 2 - -MN908947.3 16386 16408 SARS-CoV-2_55_LEFT 1 + -MN908947.3 16767 16796 SARS-CoV-2_55_RIGHT 1 - -MN908947.3 16692 16714 SARS-CoV-2_56_LEFT 2 + -MN908947.3 17082 17105 SARS-CoV-2_56_RIGHT 2 - -MN908947.3 16986 17013 SARS-CoV-2_57_LEFT 1 + -MN908947.3 17381 17405 SARS-CoV-2_57_RIGHT 1 - -MN908947.3 17323 17345 SARS-CoV-2_58_LEFT 2 + -MN908947.3 17688 17711 SARS-CoV-2_58_RIGHT 2 - -MN908947.3 17615 17642 SARS-CoV-2_59_LEFT 1 + -MN908947.3 17997 18022 SARS-CoV-2_59_RIGHT 1 - -MN908947.3 17911 17939 SARS-CoV-2_60_LEFT 2 + -MN908947.3 18307 18328 SARS-CoV-2_60_RIGHT 2 - -MN908947.3 18244 18267 SARS-CoV-2_61_LEFT 1 + -MN908947.3 18624 18652 SARS-CoV-2_61_RIGHT 1 - -MN908947.3 18550 18578 SARS-CoV-2_62_LEFT 2 + -MN908947.3 18936 18961 SARS-CoV-2_62_RIGHT 2 - -MN908947.3 18869 18891 SARS-CoV-2_63_LEFT 1 + -MN908947.3 19252 19277 SARS-CoV-2_63_RIGHT 1 - -MN908947.3 19183 19208 SARS-CoV-2_64_LEFT 2 + -MN908947.3 19558 19586 SARS-CoV-2_64_RIGHT 2 - -MN908947.3 19485 19513 SARS-CoV-2_65_LEFT 1 + -MN908947.3 19877 19901 SARS-CoV-2_65_RIGHT 1 - -MN908947.3 19810 19836 SARS-CoV-2_66_LEFT 2 + -MN908947.3 20186 20216 SARS-CoV-2_66_RIGHT 2 - -MN908947.3 20090 20117 SARS-CoV-2_67_LEFT 1 + -MN908947.3 20472 20497 SARS-CoV-2_67_RIGHT 1 - -MN908947.3 20377 20405 SARS-CoV-2_68_LEFT 2 + -MN908947.3 20766 20792 SARS-CoV-2_68_RIGHT 2 - -MN908947.3 20677 20699 SARS-CoV-2_69_LEFT 1 + -MN908947.3 21050 21080 SARS-CoV-2_69_RIGHT 1 - -MN908947.3 20988 21013 SARS-CoV-2_70_LEFT 2 + -MN908947.3 21358 21387 SARS-CoV-2_70_RIGHT 2 - -MN908947.3 21294 21316 SARS-CoV-2_71_LEFT 1 + -MN908947.3 21675 21700 SARS-CoV-2_71_RIGHT 1 - -MN908947.3 21532 21561 SARS-CoV-2_72_LEFT 2 + -MN908947.3 21904 21933 SARS-CoV-2_72_RIGHT 2 - -MN908947.3 21865 21889 SARS-CoV-2_73_LEFT 1 + -MN908947.3 22247 22274 SARS-CoV-2_73_RIGHT 1 - -MN908947.3 22091 22113 SARS-CoV-2_74_LEFT 2 + -MN908947.3 22474 22503 SARS-CoV-2_74_RIGHT 2 - -MN908947.3 22402 22428 SARS-CoV-2_75_LEFT 1 + -MN908947.3 22785 22805 SARS-CoV-2_75_RIGHT 1 - -MN908947.3 22648 22677 SARS-CoV-2_76_LEFT 2 + -MN908947.3 23028 23057 SARS-CoV-2_76_RIGHT 2 - -MN908947.3 22944 22974 SARS-CoV-2_77_LEFT 1 + -MN908947.3 23327 23351 SARS-CoV-2_77_RIGHT 1 - -MN908947.3 23219 23246 SARS-CoV-2_78_LEFT 2 + -MN908947.3 23611 23635 SARS-CoV-2_78_RIGHT 2 - -MN908947.3 23553 23575 SARS-CoV-2_79_LEFT 1 + -MN908947.3 23927 23955 SARS-CoV-2_79_RIGHT 1 - -MN908947.3 23853 23876 SARS-CoV-2_80_LEFT 2 + -MN908947.3 24233 24258 SARS-CoV-2_80_RIGHT 2 - -MN908947.3 24171 24194 SARS-CoV-2_81_LEFT 1 + -MN908947.3 24545 24567 SARS-CoV-2_81_RIGHT 1 - -MN908947.3 24426 24448 SARS-CoV-2_82_LEFT 2 + -MN908947.3 24814 24836 SARS-CoV-2_82_RIGHT 2 - -MN908947.3 24750 24772 SARS-CoV-2_83_LEFT 1 + -MN908947.3 25122 25150 SARS-CoV-2_83_RIGHT 1 - -MN908947.3 25051 25076 SARS-CoV-2_84_LEFT 2 + -MN908947.3 25438 25461 SARS-CoV-2_84_RIGHT 2 - -MN908947.3 25331 25353 SARS-CoV-2_85_LEFT 1 + -MN908947.3 25711 25740 SARS-CoV-2_85_RIGHT 1 - -MN908947.3 25645 25672 SARS-CoV-2_86_LEFT 2 + -MN908947.3 26026 26050 SARS-CoV-2_86_RIGHT 2 - -MN908947.3 25951 25979 SARS-CoV-2_87_LEFT 1 + -MN908947.3 26338 26360 SARS-CoV-2_87_RIGHT 1 - -MN908947.3 26255 26277 SARS-CoV-2_88_LEFT 2 + -MN908947.3 26635 26661 SARS-CoV-2_88_RIGHT 2 - -MN908947.3 26564 26587 SARS-CoV-2_89_LEFT 1 + -MN908947.3 26956 26979 SARS-CoV-2_89_RIGHT 1 - -MN908947.3 26873 26895 SARS-CoV-2_90_LEFT 2 + -MN908947.3 27256 27283 SARS-CoV-2_90_RIGHT 2 - -MN908947.3 27152 27177 SARS-CoV-2_91_LEFT 1 + -MN908947.3 27534 27560 SARS-CoV-2_91_RIGHT 1 - -MN908947.3 27447 27473 SARS-CoV-2_92_LEFT 2 + -MN908947.3 27826 27855 SARS-CoV-2_92_RIGHT 2 - -MN908947.3 27700 27726 SARS-CoV-2_93_LEFT 1 + -MN908947.3 28082 28104 SARS-CoV-2_93_RIGHT 1 - -MN908947.3 27996 28021 SARS-CoV-2_94_LEFT 2 + -MN908947.3 28394 28416 SARS-CoV-2_94_RIGHT 2 - -MN908947.3 28190 28214 SARS-CoV-2_95_LEFT 1 + -MN908947.3 28572 28598 SARS-CoV-2_95_RIGHT 1 - -MN908947.3 28512 28536 SARS-CoV-2_96_LEFT 2 + -MN908947.3 28893 28914 SARS-CoV-2_96_RIGHT 2 - -MN908947.3 28827 28849 SARS-CoV-2_97_LEFT 1 + -MN908947.3 29206 29227 SARS-CoV-2_97_RIGHT 1 - -MN908947.3 29136 29161 SARS-CoV-2_98_LEFT 2 + -MN908947.3 29512 29534 SARS-CoV-2_98_RIGHT 2 - -MN908947.3 29452 29475 SARS-CoV-2_99_LEFT 1 + -MN908947.3 29827 29854 SARS-CoV-2_99_RIGHT 1 - diff --git a/sars-cov-2/artic/v5.0.0_400/info.yml b/sars-cov-2/artic/v5.0.0_400/info.yml deleted file mode 100644 index 2ffca70..0000000 --- a/sars-cov-2/artic/v5.0.0_400/info.yml +++ /dev/null @@ -1,13 +0,0 @@ -schema_version: 0.9.0 -name: artic-v5.0.0_400 -organism: sars-cov-2 -developers: -- organisation_name: ARTIC network - home_page: https://artic.network/ -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.0.0_400 -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -derived_from: artic-v4.1 -primer_checksum: primaschema:869769fe308973a7 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/artic/v5.0.0_400/primer.bed b/sars-cov-2/artic/v5.0.0_400/primer.bed deleted file mode 100644 index 9a36b93..0000000 --- a/sars-cov-2/artic/v5.0.0_400/primer.bed +++ /dev/null @@ -1,192 +0,0 @@ -MN908947.3 23 48 SARS-CoV-2_400_1_LEFT 1 + GTAACAAACCAACCAACTTTCGATC -MN908947.3 398 423 SARS-CoV-2_400_1_RIGHT 1 - AAGCCACAAGTGCCATCTTTAAGAT -MN908947.3 344 366 SARS-CoV-2_400_2_LEFT 2 + TCGTACGTGGCTTTGGAGACTC -MN908947.3 707 732 SARS-CoV-2_400_2_RIGHT 2 - TCTTCATAAGGATCAGTGCCAAGCT -MN908947.3 664 687 SARS-CoV-2_400_3_LEFT 1 + CATAGTTACGGCGCCGATCTAAA -MN908947.3 1018 1047 SARS-CoV-2_400_3_RIGHT 1 - TTTGCCAATTTAATTTCAAAAGGTGTCTG -MN908947.3 970 995 SARS-CoV-2_400_4_LEFT 2 + CATGAAATTGCTTGGTACACGGAAC -MN908947.3 1340 1370 SARS-CoV-2_400_4_RIGHT 2 - AAATTTTAACAACAGCATTTTGGGGTAAGT -MN908947.3 1292 1320 SARS-CoV-2_400_5_LEFT 1 + TTTGTGGCACTGAGAATTTGACTAAAGA -MN908947.3 1660 1692 SARS-CoV-2_400_5_RIGHT 1 - ATAATGGCGATCTCTTCATTAAGTTTAAAGTC -MN908947.3 1609 1640 SARS-CoV-2_400_6_LEFT 2 + AACCTTCTTGAAATACTCCAAAAAGAGAAAG -MN908947.3 1965 1998 SARS-CoV-2_400_6_RIGHT 2 - AGTGAATACTGTGAAATTCCATCTAGTATTGTT -MN908947.3 1921 1945 SARS-CoV-2_400_7_LEFT 1 + GAAACTGCTCAAAATTCTGTGCGT -MN908947.3 2283 2316 SARS-CoV-2_400_7_RIGHT 1 - TTATTTACAAGCTTAAAGAATGTCTGAACACTC -MN908947.3 2229 2252 SARS-CoV-2_400_8_LEFT 2 + TGCTTGTGAAATTGTCGGTGGAC -MN908947.3 2603 2629 SARS-CoV-2_400_8_RIGHT 2 - AAGCCCGTTAATACAAACTGGTGTAC -MN908947.3 2533 2563 SARS-CoV-2_400_9_LEFT 1 + GTCTTGAAAACTGGTGATTTACAACCATTA -MN908947.3 2900 2933 SARS-CoV-2_400_9_RIGHT 1 - GTAATTCAGATACTGGTTGCAAAGTTTTTATGA -MN908947.3 2854 2880 SARS-CoV-2_400_10_LEFT 2 + CTCGGTACAGAAGTAAATGAGTTCGC -MN908947.3 3233 3254 SARS-CoV-2_400_10_RIGHT 2 - TGTCCTCACTGCCGTCTTGTT -MN908947.3 3184 3213 SARS-CoV-2_400_11_LEFT 1 + GAGCAAGAAGAAGATTGGTTAGATGATGA -MN908947.3 3560 3584 SARS-CoV-2_400_11_RIGHT 1 - CGCTTAAAACACAACTACCACCCA -MN908947.3 3510 3540 SARS-CoV-2_400_12_LEFT 2 + CATGCAAGTTGAATCTGATGATTACATAGC -MN908947.3 3883 3913 SARS-CoV-2_400_12_RIGHT 2 - AGTTATAAATGGCTTAACTTCCTCTTTAGG -MN908947.3 3791 3824 SARS-CoV-2_400_13_LEFT 1 + CTGTCTTTGATAAAAATCTCTATGACAAACTTG -MN908947.3 4147 4180 SARS-CoV-2_400_13_RIGHT 1 - CTTTTTAGTAGGTATAACCACAGCAGTTAAAAC -MN908947.3 4079 4108 SARS-CoV-2_400_14_LEFT 2 + GTGACATTGACATCACTTTCTTAAAGAAA -MN908947.3 4457 4488 SARS-CoV-2_400_14_RIGHT 2 - CCCTTATATTTACGCTGTATAGTTGAAACTA -MN908947.3 4403 4425 SARS-CoV-2_400_15_LEFT 1 + CACATGCAGAAGAAACACGCAA -MN908947.3 4776 4803 SARS-CoV-2_400_15_RIGHT 1 - TCTTTATAGGAACCAGCAAGTGAGATG -MN908947.3 4723 4756 SARS-CoV-2_400_16_LEFT 2 + AATGGTTATCTTACTTCTTCTTCTAAAACACCT -MN908947.3 5089 5119 SARS-CoV-2_400_16_RIGHT 2 - AAATGTTTTACCTTCATGTGAATTATGAGG -MN908947.3 5036 5063 SARS-CoV-2_400_17_LEFT 1 + GACAACAGTTTGGTCCAACTTATTTGG -MN908947.3 5398 5429 SARS-CoV-2_400_17_RIGHT 1 - CTGTCTTATTACAGTAGGCTAAGATAAGTGC -MN908947.3 5344 5370 SARS-CoV-2_400_18_LEFT 2 + GCTCTACAAGATGCTTATTACAGAGC -MN908947.3 5716 5744 SARS-CoV-2_400_18_RIGHT 2 - ACTCACTAGCACAAGTAAATGTACCATG -MN908947.3 5671 5696 SARS-CoV-2_400_19_LEFT 1 + CCTTTTGTTATGATGTCAGCACCAC -MN908947.3 6031 6062 SARS-CoV-2_400_19_RIGHT 1 - CACATACAAACTTAAAATTATCGAAGCTTGC -MN908947.3 5891 5923 SARS-CoV-2_400_20_LEFT 2 + CCATAAAACCAGTTACTTATAAATTGGATGGT -MN908947.3 6257 6288 SARS-CoV-2_400_20_RIGHT 2 - CAGGTATTTGGTTTATACGTGGCTTTATTAG -MN908947.3 6204 6237 SARS-CoV-2_400_21_LEFT 1 + GAAAGGAGCTAAATTGTTACATAAACCTATTGT -MN908947.3 6562 6595 SARS-CoV-2_400_21_RIGHT 1 - AGGTTTCTTAATAGTAAGACTAGAATTGTCTAC -MN908947.3 6515 6542 SARS-CoV-2_400_22_LEFT 2 + TAAAAATTACAGAAGAGGTTGGCCACA -MN908947.3 6882 6915 SARS-CoV-2_400_22_RIGHT 2 - TAATTAAATGAAGCCTCTAGACAAAATTTACCG -MN908947.3 6823 6854 SARS-CoV-2_400_23_LEFT 1 + AATTCTAGAATTAAAGCATCTATGCCGACTA -MN908947.3 7199 7229 SARS-CoV-2_400_23_RIGHT 1 - CAAAAGCAGTTAAATCCCATTTAAAAGATG -MN908947.3 7145 7179 SARS-CoV-2_400_24_LEFT 2 + GTTTAGATTCTTTAGACACCTATCCTTCTTTAGA -MN908947.3 7518 7545 SARS-CoV-2_400_24_RIGHT 2 - ACAATAGTTGTACATTCGACTCTTGTT -MN908947.3 7456 7482 SARS-CoV-2_400_25_LEFT 1 + GTGCATGTTGTAGACGGTTGTAATTC -MN908947.3 7819 7850 SARS-CoV-2_400_25_RIGHT 1 - CTCTCAGGTTGTCTAAGTTAACAAAATGAGA -MN908947.3 7768 7797 SARS-CoV-2_400_26_LEFT 2 + CATCTTTACTTTGATAAAGCTGGTCAAAA -MN908947.3 8136 8169 SARS-CoV-2_400_26_RIGHT 2 - GAAATAAAAGTAGATAAGACATTGTCTAAGGAC -MN908947.3 8085 8112 SARS-CoV-2_400_27_LEFT 1 + AAAACTCAAAACACTAGTTGCAACTGC -MN908947.3 8468 8498 SARS-CoV-2_400_27_RIGHT 1 - CACATGTCAACTTAAAAGGTAAGTTATTCT -MN908947.3 8406 8436 SARS-CoV-2_400_28_LEFT 2 + CGTTAAAGATTTCATGTCATTGTCTGAACA -MN908947.3 8781 8806 SARS-CoV-2_400_28_RIGHT 2 - ATTAGTATAACTACCACCACGCTGG -MN908947.3 8732 8761 SARS-CoV-2_400_29_LEFT 1 + CAGATACTTGTTTTGCTAACAAACATGCT -MN908947.3 9107 9129 SARS-CoV-2_400_29_RIGHT 1 - ACATAACGTGTGTCAGGGCGTA -MN908947.3 9023 9052 SARS-CoV-2_400_30_LEFT 2 + CAATTTTTAAAGATGCTTCTGGTAAGCCA -MN908947.3 9397 9423 SARS-CoV-2_400_30_RIGHT 2 - ACAATACCACCAGCTACTATAGATGC -MN908947.3 9322 9355 SARS-CoV-2_400_31_LEFT 1 + GGTGTAGATGCTGTAAATTTACTTACTAATATG -MN908947.3 9673 9706 SARS-CoV-2_400_31_RIGHT 1 - ACAAATGATATAAGCAATTGTTATCCAGAAAGG -MN908947.3 9571 9604 SARS-CoV-2_400_32_LEFT 2 + GGTGTTTATTCTGTTATTTACTTGTACTTGACA -MN908947.3 9949 9971 SARS-CoV-2_400_32_RIGHT 2 - TTGCGAGATGACAACAAGCAGC -MN908947.3 9896 9929 SARS-CoV-2_400_33_LEFT 1 + ATAATAAGTACAAGTATTTTAGTGGAGCAATGG -MN908947.3 10266 10295 SARS-CoV-2_400_33_RIGHT 1 - AATGTCCAATAACCCTGAGTTGAACATTA -MN908947.3 10215 10245 SARS-CoV-2_400_34_LEFT 2 + TGAAGATTTACTCATTCGTAAGTCTAATCA -MN908947.3 10587 10615 SARS-CoV-2_400_34_RIGHT 2 - GTCAACAAAAGGTCCATAAAAGTTACCT -MN908947.3 10527 10557 SARS-CoV-2_400_35_LEFT 1 + TTTTTGTTACATGCACCATATGGAATTACC -MN908947.3 10897 10927 SARS-CoV-2_400_35_RIGHT 1 - AAATTCATCTTCTAATAAAGCACTACCCAA -MN908947.3 10832 10865 SARS-CoV-2_400_36_LEFT 2 + CCGTTTTAGATATGTGTGCTTCATTAAAAGAAT -MN908947.3 11201 11232 SARS-CoV-2_400_36_RIGHT 2 - GGCATATAGACCATATTAAAATAAGCTACAG -MN908947.3 11152 11181 SARS-CoV-2_400_37_LEFT 1 + AAACATAAGCATGCATTTCTCTGTTTGTT -MN908947.3 11514 11536 SARS-CoV-2_400_37_RIGHT 1 - ACCTCTGGCCAAAAACATGACA -MN908947.3 11463 11494 SARS-CoV-2_400_38_LEFT 2 + GTGGGCTCTTATAATCTCTGTTACTTCTAAC -MN908947.3 11832 11863 SARS-CoV-2_400_38_RIGHT 2 - CTTTACATCTGACATTTTAGACTGTACAGTG -MN908947.3 11785 11811 SARS-CoV-2_400_39_LEFT 1 + AACATTAAATTGTTGGGTGTTGGTGG -MN908947.3 12161 12185 SARS-CoV-2_400_39_RIGHT 1 - CAGAATCACCATTAGCAACAGCCT -MN908947.3 12112 12137 SARS-CoV-2_400_40_LEFT 2 + TCCCTTCCATCATATGCAGCTTTTG -MN908947.3 12477 12510 SARS-CoV-2_400_40_RIGHT 2 - TTTTTATATGTGTTATAGTCTGGTATGACAACC -MN908947.3 12419 12444 SARS-CoV-2_400_41_LEFT 1 + CAAGAGATGGTTGTGTTCCCTTGAA -MN908947.3 12794 12819 SARS-CoV-2_400_41_RIGHT 1 - AACAGTGCAAGTACAAACCTACCTC -MN908947.3 12752 12774 SARS-CoV-2_400_42_LEFT 2 + GCACTGATGACAATGCGTTAGC -MN908947.3 13121 13146 SARS-CoV-2_400_42_RIGHT 2 - CAATTAGTGATTGGTTGTCCCCCAC -MN908947.3 13075 13099 SARS-CoV-2_400_43_LEFT 1 + GCTTTTGCTGTAGATGCTGCTAAA -MN908947.3 13458 13480 SARS-CoV-2_400_43_RIGHT 1 - CACCGCAAACCCGTTTAAAAAC -MN908947.3 13415 13435 SARS-CoV-2_400_44_LEFT 2 + ATCAACTCCGCGAACCCATG -MN908947.3 13787 13815 SARS-CoV-2_400_44_RIGHT 2 - TGCCATTGTGTATTTAGTAAGACGTTGA -MN908947.3 13738 13767 SARS-CoV-2_400_45_LEFT 1 + ACTTCTTTAAGTTTAGAATAGACGGTGAC -MN908947.3 14120 14144 SARS-CoV-2_400_45_RIGHT 1 - TCTACAACAGGAACTCCACTACCT -MN908947.3 14073 14100 SARS-CoV-2_400_46_LEFT 2 + CTCAATGGTAACTGGTATGATTTCGGT -MN908947.3 14427 14457 SARS-CoV-2_400_46_RIGHT 2 - TGGAACACCATCAACAAATATTTTTCTCAC -MN908947.3 14375 14407 SARS-CoV-2_400_47_LEFT 1 + CTTTAATGTTTTATTCTCTACAGTGTTCCCAC -MN908947.3 14745 14775 SARS-CoV-2_400_47_RIGHT 1 - ATCCTGAGCAAAGAAGAAGTGTTTTAATTC -MN908947.3 14700 14725 SARS-CoV-2_400_48_LEFT 2 + GACTTTGCTGTGTCTAAGGGTTTCT -MN908947.3 15065 15095 SARS-CoV-2_400_48_RIGHT 2 - TTCTTTGCACTAATGGCATACTTAAGATTC -MN908947.3 15016 15045 SARS-CoV-2_400_49_LEFT 1 + CACTTTTCGCATATACAAAACGTAATGTC -MN908947.3 15386 15416 SARS-CoV-2_400_49_RIGHT 1 - CACTCATTAGCTAATCTATAGAAACGGTGT -MN908947.3 15342 15366 SARS-CoV-2_400_50_LEFT 2 + TCACTTGTTCTTGCTCGCAAACAT -MN908947.3 15716 15742 SARS-CoV-2_400_50_RIGHT 2 - TATTGAAACACACAACAGCATCGTCA -MN908947.3 15659 15688 SARS-CoV-2_400_51_LEFT 1 + CTTTGTGAATGAGTTTTACGCATATTTGC -MN908947.3 16028 16059 SARS-CoV-2_400_51_RIGHT 1 - AGGATGTTTAGTAAGTGGGTAAGCATCTATA -MN908947.3 15964 15998 SARS-CoV-2_400_52_LEFT 2 + GTTTTGTAGATGATATCGTAAAAACAGATGGTAC -MN908947.3 16331 16364 SARS-CoV-2_400_52_RIGHT 2 - AAGACTAATTTATGTGATGTTGATATGACATGG -MN908947.3 16285 16311 SARS-CoV-2_400_53_LEFT 1 + GTGCTTGCATACGTAGACCATTCTTA -MN908947.3 16650 16679 SARS-CoV-2_400_53_RIGHT 1 - GACAGTTTAAATGTCTCCTCAGTAGCTTT -MN908947.3 16603 16630 SARS-CoV-2_400_54_LEFT 2 + CTAACACCTGTACTGAAAGACTCAAGC -MN908947.3 16985 17011 SARS-CoV-2_400_54_RIGHT 2 - AGATATTGAGTGTTGGGTATAAGCCA -MN908947.3 16929 16954 SARS-CoV-2_400_55_LEFT 1 + GTAATGCCATTAAGTGCACCTACAC -MN908947.3 17301 17329 SARS-CoV-2_400_55_RIGHT 1 - CAGGCAATGCATTTACAGTACAAAAGAC -MN908947.3 17182 17212 SARS-CoV-2_400_56_LEFT 2 + CACTATGTGAGAAGGCATTAAAATATTTGC -MN908947.3 17560 17582 SARS-CoV-2_400_56_RIGHT 2 - ACAATTTCAGCAGGACAACGCC -MN908947.3 17478 17507 SARS-CoV-2_400_57_LEFT 1 + GGCACACTAGAACCAGAATATTTCAATTC -MN908947.3 17859 17886 SARS-CoV-2_400_57_RIGHT 1 - AGTGGTTTGAGTGAATATGACATAGTC -MN908947.3 17813 17839 SARS-CoV-2_400_58_LEFT 2 + GGGACTACCAACTCAAACTGTTGATT -MN908947.3 18181 18212 SARS-CoV-2_400_58_RIGHT 2 - ATCATAGAGATGAGTCTTCTATAGGTCATGT -MN908947.3 18121 18153 SARS-CoV-2_400_59_LEFT 1 + GTGTTGACACTAAATTCAAAACTGAAGGTTTA -MN908947.3 18504 18527 SARS-CoV-2_400_59_RIGHT 1 - CGCACTACATTCCAAGGAAGTCC -MN908947.3 18460 18484 SARS-CoV-2_400_60_LEFT 2 + CGCCTGGAGATCAATTTAAACACC -MN908947.3 18835 18860 SARS-CoV-2_400_60_RIGHT 2 - GCATCACAACTAGCTACATGTGCAT -MN908947.3 18789 18815 SARS-CoV-2_400_61_LEFT 1 + GGTAACCTACAAAGCAACCATGATCT -MN908947.3 19170 19195 SARS-CoV-2_400_61_RIGHT 1 - TCCAAAATAGGCATACACCATCTGT -MN908947.3 19101 19134 SARS-CoV-2_400_62_LEFT 2 + CCTTGTAGTGACAAAGCTTATAAAATAGAAGAA -MN908947.3 19469 19495 SARS-CoV-2_400_62_RIGHT 2 - GTCTACAGACAGCACCACCTAAATTG -MN908947.3 19415 19449 SARS-CoV-2_400_63_LEFT 1 + AGTGTCAGATATAGATTATGTACCACTAAAGTCT -MN908947.3 19770 19796 SARS-CoV-2_400_63_RIGHT 1 - GCCCAAAGCTCAAATGCTACATTAAC -MN908947.3 19721 19750 SARS-CoV-2_400_64_LEFT 2 + AGTTGATGGTGTTGATGTAGAATTGTTTG -MN908947.3 20091 20121 SARS-CoV-2_400_64_RIGHT 2 - TAATGTGACTCCATTAAGACTAGCTTGTTT -MN908947.3 20028 20054 SARS-CoV-2_400_65_LEFT 1 + GCCCGTAATGGTGTTCTTATTACAGA -MN908947.3 20408 20441 SARS-CoV-2_400_65_RIGHT 1 - GTACTGTCCATAGGAATAAAATCTTCTAATTCA -MN908947.3 20358 20388 SARS-CoV-2_400_66_LEFT 2 + GGTTTACATCTACTGATTGGACTAGCTAAA -MN908947.3 20729 20758 SARS-CoV-2_400_66_RIGHT 2 - CACTATCACCATAATTTTGAAGGTCACAC -MN908947.3 20680 20708 SARS-CoV-2_400_67_LEFT 1 + GTGTTGCTATGCCTAATCTTTACAAAAT -MN908947.3 21047 21080 SARS-CoV-2_400_67_RIGHT 1 - TTTGTAACATTTTTAGTCTTAGGGTCGTACATA -MN908947.3 20991 21018 SARS-CoV-2_400_68_LEFT 2 + ATTGGTGATTGTGCAACTGTACATACA -MN908947.3 21372 21402 SARS-CoV-2_400_68_RIGHT 2 - ACTCATGTCAAATAAAGAATAGGAAGACAA -MN908947.3 21322 21352 SARS-CoV-2_400_69_LEFT 1 + ATGTCATGCATGCAAATTACATATTTTGGA -MN908947.3 21696 21722 SARS-CoV-2_400_69_RIGHT 1 - AGTCCTGAGTTGAATGTAAAACTGAG -MN908947.3 21579 21607 SARS-CoV-2_400_70_LEFT 2 + TTTATTGCCACTAGTCTCTAGTCAGTGT -MN908947.3 21927 21960 SARS-CoV-2_400_70_RIGHT 2 - AATTCACAGACTTTAATAACAACATTAGTAGCG -MN908947.3 21866 21894 SARS-CoV-2_400_71_LEFT 1 + GAGGCTGGATTTTTGGTACTACTTTAGA -MN908947.3 22238 22266 SARS-CoV-2_400_71_RIGHT 1 - ATGTTAATACCTATTGGCAAATCTACCA -MN908947.3 22156 22189 SARS-CoV-2_400_72_LEFT 2 + GGTTATTTTAAAATATATTCTAAGCACACGCCT -MN908947.3 22517 22547 SARS-CoV-2_400_72_RIGHT 2 - ATCTAACAATAGATTCTGTTGGTTGGACTC -MN908947.3 22466 22494 SARS-CoV-2_400_73_LEFT 1 + CGTTGAAATCCTTCACTGTAGAAAAAGG -MN908947.3 22839 22866 SARS-CoV-2_400_73_RIGHT 1 - GCTATAACGCAGCCTGTAAAATCATCT -MN908947.3 22742 22774 SARS-CoV-2_400_74_LEFT 2 + ATGTCTATGCAGATTCATTTGTAATTAGAGGT -MN908947.3 23119 23140 SARS-CoV-2_400_74_RIGHT 2 - TCCACAAACAGTTGCTGGTGC -MN908947.3 22922 22954 SARS-CoV-2_400_75_LEFT 1 + GATTGTTTAGGAAGTCTAATCTCAAACCTTTT -MN908947.3 23296 23324 SARS-CoV-2_400_75_RIGHT 1 - TAATGTCAAGAATCTCAAGTGTCTGTGG -MN908947.3 23229 23258 SARS-CoV-2_400_76_LEFT 2 + CAAAAAGTTTCTGCCTTTCCAACAATTTG -MN908947.3 23609 23631 SARS-CoV-2_400_76_RIGHT 2 - TGACTAGCTACACTACGTGCCC -MN908947.3 23563 23589 SARS-CoV-2_400_77_LEFT 1 + GCAGGTATATGCGCTAGTTATCAGAC -MN908947.3 23914 23944 SARS-CoV-2_400_77_RIGHT 1 - AATTGGTGGTGTTTTGTAAATTTGTTTGAC -MN908947.3 23823 23853 SARS-CoV-2_400_78_LEFT 2 + GCAATATGGCAGTTTTTGTACACAATTAAA -MN908947.3 24209 24231 SARS-CoV-2_400_78_RIGHT 2 - GCACCAAAGGTCCAACCAGAAG -MN908947.3 24160 24189 SARS-CoV-2_400_79_LEFT 1 + GATGAAATGATTGCTCAATACACTTCTGC -MN908947.3 24535 24560 SARS-CoV-2_400_79_RIGHT 1 - TGCCTGTGATCAACCTATCAATTTG -MN908947.3 24442 24468 SARS-CoV-2_400_80_LEFT 2 + ACGCTTGTTAAACAACTTAGCTCCAA -MN908947.3 24815 24839 SARS-CoV-2_400_80_RIGHT 2 - CTTCACGAGGAAAGTGTGCTTTTC -MN908947.3 24751 24774 SARS-CoV-2_400_81_LEFT 1 + CATGTGACTTATGTCCCTGCACA -MN908947.3 25120 25151 SARS-CoV-2_400_81_RIGHT 1 - GAGATTCATTTAAATTCTTGGCAACCTCATT -MN908947.3 25053 25082 SARS-CoV-2_400_82_LEFT 2 + TGATTTAGGTGACATCTCTGGCATTAATG -MN908947.3 25423 25452 SARS-CoV-2_400_82_RIGHT 2 - GATTTCACCTTGCTTCAAAGTTACAGTTC -MN908947.3 25372 25402 SARS-CoV-2_400_83_LEFT 1 + CATTACACATAAACGAACTTATGGATTTGT -MN908947.3 25744 25777 SARS-CoV-2_400_83_RIGHT 1 - GCCAAAGCCTCATTATTATTCTTACAAAGTTTA -MN908947.3 25696 25724 SARS-CoV-2_400_84_LEFT 2 + AAGCCCCTTTTCTCTATCTTTATGCTTT -MN908947.3 26059 26086 SARS-CoV-2_400_84_RIGHT 2 - TGAAGAAGGTAACATGTTCAACACCAG -MN908947.3 26011 26039 SARS-CoV-2_400_85_LEFT 1 + TCACTTCAGACTATTACCAGCTGTACTC -MN908947.3 26382 26411 SARS-CoV-2_400_85_RIGHT 1 - AAAGAAGGTTTTACAAGACTCACGTTAAC -MN908947.3 26339 26362 SARS-CoV-2_400_86_LEFT 2 + CATCCTTACTGCGCTTCGATTGT -MN908947.3 26730 26756 SARS-CoV-2_400_86_RIGHT 2 - ACCGGTGATCCAATTTATTCTGTAAA -MN908947.3 26639 26672 SARS-CoV-2_400_87_LEFT 1 + GCCAACAGGAATAGGTTTTTGTATATAATTAAG -MN908947.3 27011 27038 SARS-CoV-2_400_87_RIGHT 1 - TGTAGCAACAGTGATTTCTTTAGGCAG -MN908947.3 26965 26989 SARS-CoV-2_400_88_LEFT 2 + TCTTCGTATTGCTGGACACCATCT -MN908947.3 27342 27372 SARS-CoV-2_400_88_RIGHT 2 - TGGTTGCTCTTCATCTAATTGAGAATATTT -MN908947.3 27218 27251 SARS-CoV-2_400_89_LEFT 1 + CTTTCAGGTTACTATAGCAGAGATATTACTAAT -MN908947.3 27583 27603 SARS-CoV-2_400_89_RIGHT 1 - GCCGTCAGGACAAGCAAAAG -MN908947.3 27530 27558 SARS-CoV-2_400_90_LEFT 2 + TCATCCTCTAGCTGATAACAAATTTGCA -MN908947.3 27927 27950 SARS-CoV-2_400_90_RIGHT 2 - TTCTTGGTGAAATGCAGCTACAG -MN908947.3 27832 27860 SARS-CoV-2_400_91_LEFT 1 + TATCTTTTGGTTCTCACTTGAACTGCAA -MN908947.3 28209 28237 SARS-CoV-2_400_91_RIGHT 1 - CGAACGTCATGATACTCTAAAAAGTCTT -MN908947.3 28135 28166 SARS-CoV-2_400_92_LEFT 2 + TTCCTGTTTACCTTTTACAATTAATTGCCAG -MN908947.3 28513 28539 SARS-CoV-2_400_92_RIGHT 2 - CTTCGGTAGTAGCCAATTTGGTCATC -MN908947.3 28473 28493 SARS-CoV-2_400_93_LEFT 1 + TCGAGGACAAGGCGTTCCAA -MN908947.3 28849 28873 SARS-CoV-2_400_93_RIGHT 1 - GCCTGGAGTTGAATTTCTTGAACT -MN908947.3 28808 28829 SARS-CoV-2_400_94_LEFT 2 + GCAGTCAAGCCTCTTCTCGTT -MN908947.3 29203 29224 SARS-CoV-2_400_94_RIGHT 2 - CATTCCGAAGAACGCTGAAGC -MN908947.3 29159 29183 SARS-CoV-2_400_95_LEFT 1 + CTGATTACAAACATTGGCCGCAAA -MN908947.3 29538 29559 SARS-CoV-2_400_95_RIGHT 1 - ATCTGCCTTGTGTGGTCTGCA -MN908947.3 29493 29515 SARS-CoV-2_400_96_LEFT 2 + GCAACAATCCATGAGCAGTGCT -MN908947.3 29840 29873 SARS-CoV-2_400_96_RIGHT 2 - TTTGTCATTCTCCTAAGAAGCTATTAAAATCAC diff --git a/sars-cov-2/artic/v5.0.0_400/scheme.bed b/sars-cov-2/artic/v5.0.0_400/scheme.bed deleted file mode 100644 index 60c9505..0000000 --- a/sars-cov-2/artic/v5.0.0_400/scheme.bed +++ /dev/null @@ -1,192 +0,0 @@ -MN908947.3 23 48 SARS-CoV-2_400_1_LEFT 1 + -MN908947.3 398 423 SARS-CoV-2_400_1_RIGHT 1 - -MN908947.3 344 366 SARS-CoV-2_400_2_LEFT 2 + -MN908947.3 707 732 SARS-CoV-2_400_2_RIGHT 2 - -MN908947.3 664 687 SARS-CoV-2_400_3_LEFT 1 + -MN908947.3 1018 1047 SARS-CoV-2_400_3_RIGHT 1 - -MN908947.3 970 995 SARS-CoV-2_400_4_LEFT 2 + -MN908947.3 1340 1370 SARS-CoV-2_400_4_RIGHT 2 - -MN908947.3 1292 1320 SARS-CoV-2_400_5_LEFT 1 + -MN908947.3 1660 1692 SARS-CoV-2_400_5_RIGHT 1 - -MN908947.3 1609 1640 SARS-CoV-2_400_6_LEFT 2 + -MN908947.3 1965 1998 SARS-CoV-2_400_6_RIGHT 2 - -MN908947.3 1921 1945 SARS-CoV-2_400_7_LEFT 1 + -MN908947.3 2283 2316 SARS-CoV-2_400_7_RIGHT 1 - -MN908947.3 2229 2252 SARS-CoV-2_400_8_LEFT 2 + -MN908947.3 2603 2629 SARS-CoV-2_400_8_RIGHT 2 - -MN908947.3 2533 2563 SARS-CoV-2_400_9_LEFT 1 + -MN908947.3 2900 2933 SARS-CoV-2_400_9_RIGHT 1 - -MN908947.3 2854 2880 SARS-CoV-2_400_10_LEFT 2 + -MN908947.3 3233 3254 SARS-CoV-2_400_10_RIGHT 2 - -MN908947.3 3184 3213 SARS-CoV-2_400_11_LEFT 1 + -MN908947.3 3560 3584 SARS-CoV-2_400_11_RIGHT 1 - -MN908947.3 3510 3540 SARS-CoV-2_400_12_LEFT 2 + -MN908947.3 3883 3913 SARS-CoV-2_400_12_RIGHT 2 - -MN908947.3 3791 3824 SARS-CoV-2_400_13_LEFT 1 + -MN908947.3 4147 4180 SARS-CoV-2_400_13_RIGHT 1 - -MN908947.3 4079 4108 SARS-CoV-2_400_14_LEFT 2 + -MN908947.3 4457 4488 SARS-CoV-2_400_14_RIGHT 2 - -MN908947.3 4403 4425 SARS-CoV-2_400_15_LEFT 1 + -MN908947.3 4776 4803 SARS-CoV-2_400_15_RIGHT 1 - -MN908947.3 4723 4756 SARS-CoV-2_400_16_LEFT 2 + -MN908947.3 5089 5119 SARS-CoV-2_400_16_RIGHT 2 - -MN908947.3 5036 5063 SARS-CoV-2_400_17_LEFT 1 + -MN908947.3 5398 5429 SARS-CoV-2_400_17_RIGHT 1 - -MN908947.3 5344 5370 SARS-CoV-2_400_18_LEFT 2 + -MN908947.3 5716 5744 SARS-CoV-2_400_18_RIGHT 2 - -MN908947.3 5671 5696 SARS-CoV-2_400_19_LEFT 1 + -MN908947.3 6031 6062 SARS-CoV-2_400_19_RIGHT 1 - -MN908947.3 5891 5923 SARS-CoV-2_400_20_LEFT 2 + -MN908947.3 6257 6288 SARS-CoV-2_400_20_RIGHT 2 - -MN908947.3 6204 6237 SARS-CoV-2_400_21_LEFT 1 + -MN908947.3 6562 6595 SARS-CoV-2_400_21_RIGHT 1 - -MN908947.3 6515 6542 SARS-CoV-2_400_22_LEFT 2 + -MN908947.3 6882 6915 SARS-CoV-2_400_22_RIGHT 2 - -MN908947.3 6823 6854 SARS-CoV-2_400_23_LEFT 1 + -MN908947.3 7199 7229 SARS-CoV-2_400_23_RIGHT 1 - -MN908947.3 7145 7179 SARS-CoV-2_400_24_LEFT 2 + -MN908947.3 7518 7545 SARS-CoV-2_400_24_RIGHT 2 - -MN908947.3 7456 7482 SARS-CoV-2_400_25_LEFT 1 + -MN908947.3 7819 7850 SARS-CoV-2_400_25_RIGHT 1 - -MN908947.3 7768 7797 SARS-CoV-2_400_26_LEFT 2 + -MN908947.3 8136 8169 SARS-CoV-2_400_26_RIGHT 2 - -MN908947.3 8085 8112 SARS-CoV-2_400_27_LEFT 1 + -MN908947.3 8468 8498 SARS-CoV-2_400_27_RIGHT 1 - -MN908947.3 8406 8436 SARS-CoV-2_400_28_LEFT 2 + -MN908947.3 8781 8806 SARS-CoV-2_400_28_RIGHT 2 - -MN908947.3 8732 8761 SARS-CoV-2_400_29_LEFT 1 + -MN908947.3 9107 9129 SARS-CoV-2_400_29_RIGHT 1 - -MN908947.3 9023 9052 SARS-CoV-2_400_30_LEFT 2 + -MN908947.3 9397 9423 SARS-CoV-2_400_30_RIGHT 2 - -MN908947.3 9322 9355 SARS-CoV-2_400_31_LEFT 1 + -MN908947.3 9673 9706 SARS-CoV-2_400_31_RIGHT 1 - -MN908947.3 9571 9604 SARS-CoV-2_400_32_LEFT 2 + -MN908947.3 9949 9971 SARS-CoV-2_400_32_RIGHT 2 - -MN908947.3 9896 9929 SARS-CoV-2_400_33_LEFT 1 + -MN908947.3 10266 10295 SARS-CoV-2_400_33_RIGHT 1 - -MN908947.3 10215 10245 SARS-CoV-2_400_34_LEFT 2 + -MN908947.3 10587 10615 SARS-CoV-2_400_34_RIGHT 2 - -MN908947.3 10527 10557 SARS-CoV-2_400_35_LEFT 1 + -MN908947.3 10897 10927 SARS-CoV-2_400_35_RIGHT 1 - -MN908947.3 10832 10865 SARS-CoV-2_400_36_LEFT 2 + -MN908947.3 11201 11232 SARS-CoV-2_400_36_RIGHT 2 - -MN908947.3 11152 11181 SARS-CoV-2_400_37_LEFT 1 + -MN908947.3 11514 11536 SARS-CoV-2_400_37_RIGHT 1 - -MN908947.3 11463 11494 SARS-CoV-2_400_38_LEFT 2 + -MN908947.3 11832 11863 SARS-CoV-2_400_38_RIGHT 2 - -MN908947.3 11785 11811 SARS-CoV-2_400_39_LEFT 1 + -MN908947.3 12161 12185 SARS-CoV-2_400_39_RIGHT 1 - -MN908947.3 12112 12137 SARS-CoV-2_400_40_LEFT 2 + -MN908947.3 12477 12510 SARS-CoV-2_400_40_RIGHT 2 - -MN908947.3 12419 12444 SARS-CoV-2_400_41_LEFT 1 + -MN908947.3 12794 12819 SARS-CoV-2_400_41_RIGHT 1 - -MN908947.3 12752 12774 SARS-CoV-2_400_42_LEFT 2 + -MN908947.3 13121 13146 SARS-CoV-2_400_42_RIGHT 2 - -MN908947.3 13075 13099 SARS-CoV-2_400_43_LEFT 1 + -MN908947.3 13458 13480 SARS-CoV-2_400_43_RIGHT 1 - -MN908947.3 13415 13435 SARS-CoV-2_400_44_LEFT 2 + -MN908947.3 13787 13815 SARS-CoV-2_400_44_RIGHT 2 - -MN908947.3 13738 13767 SARS-CoV-2_400_45_LEFT 1 + -MN908947.3 14120 14144 SARS-CoV-2_400_45_RIGHT 1 - -MN908947.3 14073 14100 SARS-CoV-2_400_46_LEFT 2 + -MN908947.3 14427 14457 SARS-CoV-2_400_46_RIGHT 2 - -MN908947.3 14375 14407 SARS-CoV-2_400_47_LEFT 1 + -MN908947.3 14745 14775 SARS-CoV-2_400_47_RIGHT 1 - -MN908947.3 14700 14725 SARS-CoV-2_400_48_LEFT 2 + -MN908947.3 15065 15095 SARS-CoV-2_400_48_RIGHT 2 - -MN908947.3 15016 15045 SARS-CoV-2_400_49_LEFT 1 + -MN908947.3 15386 15416 SARS-CoV-2_400_49_RIGHT 1 - -MN908947.3 15342 15366 SARS-CoV-2_400_50_LEFT 2 + -MN908947.3 15716 15742 SARS-CoV-2_400_50_RIGHT 2 - -MN908947.3 15659 15688 SARS-CoV-2_400_51_LEFT 1 + -MN908947.3 16028 16059 SARS-CoV-2_400_51_RIGHT 1 - -MN908947.3 15964 15998 SARS-CoV-2_400_52_LEFT 2 + -MN908947.3 16331 16364 SARS-CoV-2_400_52_RIGHT 2 - -MN908947.3 16285 16311 SARS-CoV-2_400_53_LEFT 1 + -MN908947.3 16650 16679 SARS-CoV-2_400_53_RIGHT 1 - -MN908947.3 16603 16630 SARS-CoV-2_400_54_LEFT 2 + -MN908947.3 16985 17011 SARS-CoV-2_400_54_RIGHT 2 - -MN908947.3 16929 16954 SARS-CoV-2_400_55_LEFT 1 + -MN908947.3 17301 17329 SARS-CoV-2_400_55_RIGHT 1 - -MN908947.3 17182 17212 SARS-CoV-2_400_56_LEFT 2 + -MN908947.3 17560 17582 SARS-CoV-2_400_56_RIGHT 2 - -MN908947.3 17478 17507 SARS-CoV-2_400_57_LEFT 1 + -MN908947.3 17859 17886 SARS-CoV-2_400_57_RIGHT 1 - -MN908947.3 17813 17839 SARS-CoV-2_400_58_LEFT 2 + -MN908947.3 18181 18212 SARS-CoV-2_400_58_RIGHT 2 - -MN908947.3 18121 18153 SARS-CoV-2_400_59_LEFT 1 + -MN908947.3 18504 18527 SARS-CoV-2_400_59_RIGHT 1 - -MN908947.3 18460 18484 SARS-CoV-2_400_60_LEFT 2 + -MN908947.3 18835 18860 SARS-CoV-2_400_60_RIGHT 2 - -MN908947.3 18789 18815 SARS-CoV-2_400_61_LEFT 1 + -MN908947.3 19170 19195 SARS-CoV-2_400_61_RIGHT 1 - -MN908947.3 19101 19134 SARS-CoV-2_400_62_LEFT 2 + -MN908947.3 19469 19495 SARS-CoV-2_400_62_RIGHT 2 - -MN908947.3 19415 19449 SARS-CoV-2_400_63_LEFT 1 + -MN908947.3 19770 19796 SARS-CoV-2_400_63_RIGHT 1 - -MN908947.3 19721 19750 SARS-CoV-2_400_64_LEFT 2 + -MN908947.3 20091 20121 SARS-CoV-2_400_64_RIGHT 2 - -MN908947.3 20028 20054 SARS-CoV-2_400_65_LEFT 1 + -MN908947.3 20408 20441 SARS-CoV-2_400_65_RIGHT 1 - -MN908947.3 20358 20388 SARS-CoV-2_400_66_LEFT 2 + -MN908947.3 20729 20758 SARS-CoV-2_400_66_RIGHT 2 - -MN908947.3 20680 20708 SARS-CoV-2_400_67_LEFT 1 + -MN908947.3 21047 21080 SARS-CoV-2_400_67_RIGHT 1 - -MN908947.3 20991 21018 SARS-CoV-2_400_68_LEFT 2 + -MN908947.3 21372 21402 SARS-CoV-2_400_68_RIGHT 2 - -MN908947.3 21322 21352 SARS-CoV-2_400_69_LEFT 1 + -MN908947.3 21696 21722 SARS-CoV-2_400_69_RIGHT 1 - -MN908947.3 21579 21607 SARS-CoV-2_400_70_LEFT 2 + -MN908947.3 21927 21960 SARS-CoV-2_400_70_RIGHT 2 - -MN908947.3 21866 21894 SARS-CoV-2_400_71_LEFT 1 + -MN908947.3 22238 22266 SARS-CoV-2_400_71_RIGHT 1 - -MN908947.3 22156 22189 SARS-CoV-2_400_72_LEFT 2 + -MN908947.3 22517 22547 SARS-CoV-2_400_72_RIGHT 2 - -MN908947.3 22466 22494 SARS-CoV-2_400_73_LEFT 1 + -MN908947.3 22839 22866 SARS-CoV-2_400_73_RIGHT 1 - -MN908947.3 22742 22774 SARS-CoV-2_400_74_LEFT 2 + -MN908947.3 23119 23140 SARS-CoV-2_400_74_RIGHT 2 - -MN908947.3 22922 22954 SARS-CoV-2_400_75_LEFT 1 + -MN908947.3 23296 23324 SARS-CoV-2_400_75_RIGHT 1 - -MN908947.3 23229 23258 SARS-CoV-2_400_76_LEFT 2 + -MN908947.3 23609 23631 SARS-CoV-2_400_76_RIGHT 2 - -MN908947.3 23563 23589 SARS-CoV-2_400_77_LEFT 1 + -MN908947.3 23914 23944 SARS-CoV-2_400_77_RIGHT 1 - -MN908947.3 23823 23853 SARS-CoV-2_400_78_LEFT 2 + -MN908947.3 24209 24231 SARS-CoV-2_400_78_RIGHT 2 - -MN908947.3 24160 24189 SARS-CoV-2_400_79_LEFT 1 + -MN908947.3 24535 24560 SARS-CoV-2_400_79_RIGHT 1 - -MN908947.3 24442 24468 SARS-CoV-2_400_80_LEFT 2 + -MN908947.3 24815 24839 SARS-CoV-2_400_80_RIGHT 2 - -MN908947.3 24751 24774 SARS-CoV-2_400_81_LEFT 1 + -MN908947.3 25120 25151 SARS-CoV-2_400_81_RIGHT 1 - -MN908947.3 25053 25082 SARS-CoV-2_400_82_LEFT 2 + -MN908947.3 25423 25452 SARS-CoV-2_400_82_RIGHT 2 - -MN908947.3 25372 25402 SARS-CoV-2_400_83_LEFT 1 + -MN908947.3 25744 25777 SARS-CoV-2_400_83_RIGHT 1 - -MN908947.3 25696 25724 SARS-CoV-2_400_84_LEFT 2 + -MN908947.3 26059 26086 SARS-CoV-2_400_84_RIGHT 2 - -MN908947.3 26011 26039 SARS-CoV-2_400_85_LEFT 1 + -MN908947.3 26382 26411 SARS-CoV-2_400_85_RIGHT 1 - -MN908947.3 26339 26362 SARS-CoV-2_400_86_LEFT 2 + -MN908947.3 26730 26756 SARS-CoV-2_400_86_RIGHT 2 - -MN908947.3 26639 26672 SARS-CoV-2_400_87_LEFT 1 + -MN908947.3 27011 27038 SARS-CoV-2_400_87_RIGHT 1 - -MN908947.3 26965 26989 SARS-CoV-2_400_88_LEFT 2 + -MN908947.3 27342 27372 SARS-CoV-2_400_88_RIGHT 2 - -MN908947.3 27218 27251 SARS-CoV-2_400_89_LEFT 1 + -MN908947.3 27583 27603 SARS-CoV-2_400_89_RIGHT 1 - -MN908947.3 27530 27558 SARS-CoV-2_400_90_LEFT 2 + -MN908947.3 27927 27950 SARS-CoV-2_400_90_RIGHT 2 - -MN908947.3 27832 27860 SARS-CoV-2_400_91_LEFT 1 + -MN908947.3 28209 28237 SARS-CoV-2_400_91_RIGHT 1 - -MN908947.3 28135 28166 SARS-CoV-2_400_92_LEFT 2 + -MN908947.3 28513 28539 SARS-CoV-2_400_92_RIGHT 2 - -MN908947.3 28473 28493 SARS-CoV-2_400_93_LEFT 1 + -MN908947.3 28849 28873 SARS-CoV-2_400_93_RIGHT 1 - -MN908947.3 28808 28829 SARS-CoV-2_400_94_LEFT 2 + -MN908947.3 29203 29224 SARS-CoV-2_400_94_RIGHT 2 - -MN908947.3 29159 29183 SARS-CoV-2_400_95_LEFT 1 + -MN908947.3 29538 29559 SARS-CoV-2_400_95_RIGHT 1 - -MN908947.3 29493 29515 SARS-CoV-2_400_96_LEFT 2 + -MN908947.3 29840 29873 SARS-CoV-2_400_96_RIGHT 2 - diff --git a/sars-cov-2/artic/v5.1.0_400/info.yml b/sars-cov-2/artic/v5.1.0_400/info.yml deleted file mode 100644 index 5a9101e..0000000 --- a/sars-cov-2/artic/v5.1.0_400/info.yml +++ /dev/null @@ -1,14 +0,0 @@ -schema_version: 0.9.0 -name: artic-v5.1.0_400 -organism: sars-cov-2 -developers: -- organisation_name: ARTIC network - home_page: https://artic.network/ -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.1.0_400 -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -derived_from: artic-v5.0.0_400 -primer_scheme_status: DEPRECATED -primer_checksum: primaschema:f5314a5447983829 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/artic/v5.1.0_400/primer.bed b/sars-cov-2/artic/v5.1.0_400/primer.bed deleted file mode 100644 index f5a2ce4..0000000 --- a/sars-cov-2/artic/v5.1.0_400/primer.bed +++ /dev/null @@ -1,208 +0,0 @@ -MN908947.3 23 48 SARS-CoV-2_400_1_LEFT 1 + GTAACAAACCAACCAACTTTCGATC -MN908947.3 47 78 SARS-CoV-2_400_1_LEFT_alt 1 + CTCTTGTAGATCTGTTCTCTAAACGAACTTT -MN908947.3 398 423 SARS-CoV-2_400_1_RIGHT 1 - AAGCCACAAGTGCCATCTTTAAGAT -MN908947.3 419 447 SARS-CoV-2_400_1_RIGHT_alt 1 - AAAACGCCTTTTTCAACTTCTACTAAGC -MN908947.3 344 366 SARS-CoV-2_400_2_LEFT 2 + TCGTACGTGGCTTTGGAGACTC -MN908947.3 707 732 SARS-CoV-2_400_2_RIGHT 2 - TCTTCATAAGGATCAGTGCCAAGCT -MN908947.3 638 661 SARS-CoV-2_400_3_LEFT_alt 1 + AGAACGGTAATAAAGGAGCTGGT -MN908947.3 664 687 SARS-CoV-2_400_3_LEFT 1 + CATAGTTACGGCGCCGATCTAAA -MN908947.3 1018 1047 SARS-CoV-2_400_3_RIGHT 1 - TTTGCCAATTTAATTTCAAAAGGTGTCTG -MN908947.3 970 995 SARS-CoV-2_400_4_LEFT 2 + CATGAAATTGCTTGGTACACGGAAC -MN908947.3 1340 1370 SARS-CoV-2_400_4_RIGHT 2 - AAATTTTAACAACAGCATTTTGGGGTAAGT -MN908947.3 1292 1320 SARS-CoV-2_400_5_LEFT 1 + TTTGTGGCACTGAGAATTTGACTAAAGA -MN908947.3 1660 1692 SARS-CoV-2_400_5_RIGHT 1 - ATAATGGCGATCTCTTCATTAAGTTTAAAGTC -MN908947.3 1574 1596 SARS-CoV-2_400_6_LEFT_alt 2 + GTGTTGTTGGAGAAGGTTCCGA -MN908947.3 1609 1640 SARS-CoV-2_400_6_LEFT 2 + AACCTTCTTGAAATACTCCAAAAAGAGAAAG -MN908947.3 1945 1972 SARS-CoV-2_400_6_RIGHT_alt 2 - TATTGTTATAGCGGCCTTCTGTAAAAC -MN908947.3 1965 1998 SARS-CoV-2_400_6_RIGHT 2 - AGTGAATACTGTGAAATTCCATCTAGTATTGTT -MN908947.3 1921 1945 SARS-CoV-2_400_7_LEFT 1 + GAAACTGCTCAAAATTCTGTGCGT -MN908947.3 2283 2316 SARS-CoV-2_400_7_RIGHT 1 - TTATTTACAAGCTTAAAGAATGTCTGAACACTC -MN908947.3 2229 2252 SARS-CoV-2_400_8_LEFT 2 + TGCTTGTGAAATTGTCGGTGGAC -MN908947.3 2603 2629 SARS-CoV-2_400_8_RIGHT 2 - AAGCCCGTTAATACAAACTGGTGTAC -MN908947.3 2533 2563 SARS-CoV-2_400_9_LEFT 1 + GTCTTGAAAACTGGTGATTTACAACCATTA -MN908947.3 2900 2933 SARS-CoV-2_400_9_RIGHT 1 - GTAATTCAGATACTGGTTGCAAAGTTTTTATGA -MN908947.3 2854 2880 SARS-CoV-2_400_10_LEFT 2 + CTCGGTACAGAAGTAAATGAGTTCGC -MN908947.3 3233 3254 SARS-CoV-2_400_10_RIGHT 2 - TGTCCTCACTGCCGTCTTGTT -MN908947.3 3184 3213 SARS-CoV-2_400_11_LEFT 1 + GAGCAAGAAGAAGATTGGTTAGATGATGA -MN908947.3 3560 3584 SARS-CoV-2_400_11_RIGHT 1 - CGCTTAAAACACAACTACCACCCA -MN908947.3 3510 3540 SARS-CoV-2_400_12_LEFT 2 + CATGCAAGTTGAATCTGATGATTACATAGC -MN908947.3 3883 3913 SARS-CoV-2_400_12_RIGHT 2 - AGTTATAAATGGCTTAACTTCCTCTTTAGG -MN908947.3 3791 3824 SARS-CoV-2_400_13_LEFT 1 + CTGTCTTTGATAAAAATCTCTATGACAAACTTG -MN908947.3 4147 4180 SARS-CoV-2_400_13_RIGHT 1 - CTTTTTAGTAGGTATAACCACAGCAGTTAAAAC -MN908947.3 4079 4108 SARS-CoV-2_400_14_LEFT 2 + GTGACATTGACATCACTTTCTTAAAGAAA -MN908947.3 4457 4488 SARS-CoV-2_400_14_RIGHT 2 - CCCTTATATTTACGCTGTATAGTTGAAACTA -MN908947.3 4403 4425 SARS-CoV-2_400_15_LEFT 1 + CACATGCAGAAGAAACACGCAA -MN908947.3 4776 4803 SARS-CoV-2_400_15_RIGHT 1 - TCTTTATAGGAACCAGCAAGTGAGATG -MN908947.3 4723 4756 SARS-CoV-2_400_16_LEFT 2 + AATGGTTATCTTACTTCTTCTTCTAAAACACCT -MN908947.3 5089 5119 SARS-CoV-2_400_16_RIGHT 2 - AAATGTTTTACCTTCATGTGAATTATGAGG -MN908947.3 5036 5063 SARS-CoV-2_400_17_LEFT 1 + GACAACAGTTTGGTCCAACTTATTTGG -MN908947.3 5398 5429 SARS-CoV-2_400_17_RIGHT 1 - CTGTCTTATTACAGTAGGCTAAGATAAGTGC -MN908947.3 5344 5370 SARS-CoV-2_400_18_LEFT 2 + GCTCTACAAGATGCTTATTACAGAGC -MN908947.3 5716 5744 SARS-CoV-2_400_18_RIGHT 2 - ACTCACTAGCACAAGTAAATGTACCATG -MN908947.3 5671 5696 SARS-CoV-2_400_19_LEFT 1 + CCTTTTGTTATGATGTCAGCACCAC -MN908947.3 6031 6062 SARS-CoV-2_400_19_RIGHT 1 - CACATACAAACTTAAAATTATCGAAGCTTGC -MN908947.3 5891 5923 SARS-CoV-2_400_20_LEFT 2 + CCATAAAACCAGTTACTTATAAATTGGATGGT -MN908947.3 6257 6288 SARS-CoV-2_400_20_RIGHT 2 - CAGGTATTTGGTTTATACGTGGCTTTATTAG -MN908947.3 6204 6237 SARS-CoV-2_400_21_LEFT 1 + GAAAGGAGCTAAATTGTTACATAAACCTATTGT -MN908947.3 6562 6595 SARS-CoV-2_400_21_RIGHT 1 - AGGTTTCTTAATAGTAAGACTAGAATTGTCTAC -MN908947.3 6515 6542 SARS-CoV-2_400_22_LEFT 2 + TAAAAATTACAGAAGAGGTTGGCCACA -MN908947.3 6882 6915 SARS-CoV-2_400_22_RIGHT 2 - TAATTAAATGAAGCCTCTAGACAAAATTTACCG -MN908947.3 6823 6854 SARS-CoV-2_400_23_LEFT 1 + AATTCTAGAATTAAAGCATCTATGCCGACTA -MN908947.3 7199 7229 SARS-CoV-2_400_23_RIGHT 1 - CAAAAGCAGTTAAATCCCATTTAAAAGATG -MN908947.3 7145 7179 SARS-CoV-2_400_24_LEFT 2 + GTTTAGATTCTTTAGACACCTATCCTTCTTTAGA -MN908947.3 7518 7545 SARS-CoV-2_400_24_RIGHT 2 - ACAATAGTTGTACATTCGACTCTTGTT -MN908947.3 7456 7482 SARS-CoV-2_400_25_LEFT 1 + GTGCATGTTGTAGACGGTTGTAATTC -MN908947.3 7819 7850 SARS-CoV-2_400_25_RIGHT 1 - CTCTCAGGTTGTCTAAGTTAACAAAATGAGA -MN908947.3 7768 7797 SARS-CoV-2_400_26_LEFT 2 + CATCTTTACTTTGATAAAGCTGGTCAAAA -MN908947.3 8136 8169 SARS-CoV-2_400_26_RIGHT 2 - GAAATAAAAGTAGATAAGACATTGTCTAAGGAC -MN908947.3 8085 8112 SARS-CoV-2_400_27_LEFT 1 + AAAACTCAAAACACTAGTTGCAACTGC -MN908947.3 8468 8498 SARS-CoV-2_400_27_RIGHT 1 - CACATGTCAACTTAAAAGGTAAGTTATTCT -MN908947.3 8406 8436 SARS-CoV-2_400_28_LEFT 2 + CGTTAAAGATTTCATGTCATTGTCTGAACA -MN908947.3 8781 8806 SARS-CoV-2_400_28_RIGHT 2 - ATTAGTATAACTACCACCACGCTGG -MN908947.3 8732 8761 SARS-CoV-2_400_29_LEFT 1 + CAGATACTTGTTTTGCTAACAAACATGCT -MN908947.3 9107 9129 SARS-CoV-2_400_29_RIGHT 1 - ACATAACGTGTGTCAGGGCGTA -MN908947.3 9023 9052 SARS-CoV-2_400_30_LEFT 2 + CAATTTTTAAAGATGCTTCTGGTAAGCCA -MN908947.3 9397 9423 SARS-CoV-2_400_30_RIGHT 2 - ACAATACCACCAGCTACTATAGATGC -MN908947.3 9299 9324 SARS-CoV-2_400_31_LEFT_alt 1 + GATCTTTACCAGGAGTTTTCTGTGG -MN908947.3 9322 9355 SARS-CoV-2_400_31_LEFT 1 + GGTGTAGATGCTGTAAATTTACTTACTAATATG -MN908947.3 9673 9706 SARS-CoV-2_400_31_RIGHT 1 - ACAAATGATATAAGCAATTGTTATCCAGAAAGG -MN908947.3 9571 9604 SARS-CoV-2_400_32_LEFT 2 + GGTGTTTATTCTGTTATTTACTTGTACTTGACA -MN908947.3 9949 9971 SARS-CoV-2_400_32_RIGHT 2 - TTGCGAGATGACAACAAGCAGC -MN908947.3 9896 9929 SARS-CoV-2_400_33_LEFT 1 + ATAATAAGTACAAGTATTTTAGTGGAGCAATGG -MN908947.3 10266 10295 SARS-CoV-2_400_33_RIGHT 1 - AATGTCCAATAACCCTGAGTTGAACATTA -MN908947.3 10215 10245 SARS-CoV-2_400_34_LEFT 2 + TGAAGATTTACTCATTCGTAAGTCTAATCA -MN908947.3 10587 10615 SARS-CoV-2_400_34_RIGHT 2 - GTCAACAAAAGGTCCATAAAAGTTACCT -MN908947.3 10527 10557 SARS-CoV-2_400_35_LEFT 1 + TTTTTGTTACATGCACCATATGGAATTACC -MN908947.3 10897 10927 SARS-CoV-2_400_35_RIGHT 1 - AAATTCATCTTCTAATAAAGCACTACCCAA -MN908947.3 10832 10865 SARS-CoV-2_400_36_LEFT 2 + CCGTTTTAGATATGTGTGCTTCATTAAAAGAAT -MN908947.3 11201 11232 SARS-CoV-2_400_36_RIGHT 2 - GGCATATAGACCATATTAAAATAAGCTACAG -MN908947.3 11152 11181 SARS-CoV-2_400_37_LEFT 1 + AAACATAAGCATGCATTTCTCTGTTTGTT -MN908947.3 11514 11536 SARS-CoV-2_400_37_RIGHT 1 - ACCTCTGGCCAAAAACATGACA -MN908947.3 11463 11494 SARS-CoV-2_400_38_LEFT 2 + GTGGGCTCTTATAATCTCTGTTACTTCTAAC -MN908947.3 11832 11863 SARS-CoV-2_400_38_RIGHT 2 - CTTTACATCTGACATTTTAGACTGTACAGTG -MN908947.3 11785 11811 SARS-CoV-2_400_39_LEFT 1 + AACATTAAATTGTTGGGTGTTGGTGG -MN908947.3 12161 12185 SARS-CoV-2_400_39_RIGHT 1 - CAGAATCACCATTAGCAACAGCCT -MN908947.3 12112 12137 SARS-CoV-2_400_40_LEFT 2 + TCCCTTCCATCATATGCAGCTTTTG -MN908947.3 12477 12510 SARS-CoV-2_400_40_RIGHT 2 - TTTTTATATGTGTTATAGTCTGGTATGACAACC -MN908947.3 12419 12444 SARS-CoV-2_400_41_LEFT 1 + CAAGAGATGGTTGTGTTCCCTTGAA -MN908947.3 12794 12819 SARS-CoV-2_400_41_RIGHT 1 - AACAGTGCAAGTACAAACCTACCTC -MN908947.3 12752 12774 SARS-CoV-2_400_42_LEFT 2 + GCACTGATGACAATGCGTTAGC -MN908947.3 13121 13146 SARS-CoV-2_400_42_RIGHT 2 - CAATTAGTGATTGGTTGTCCCCCAC -MN908947.3 13075 13099 SARS-CoV-2_400_43_LEFT 1 + GCTTTTGCTGTAGATGCTGCTAAA -MN908947.3 13458 13480 SARS-CoV-2_400_43_RIGHT 1 - CACCGCAAACCCGTTTAAAAAC -MN908947.3 13415 13435 SARS-CoV-2_400_44_LEFT 2 + ATCAACTCCGCGAACCCATG -MN908947.3 13787 13815 SARS-CoV-2_400_44_RIGHT 2 - TGCCATTGTGTATTTAGTAAGACGTTGA -MN908947.3 13738 13767 SARS-CoV-2_400_45_LEFT 1 + ACTTCTTTAAGTTTAGAATAGACGGTGAC -MN908947.3 14120 14144 SARS-CoV-2_400_45_RIGHT 1 - TCTACAACAGGAACTCCACTACCT -MN908947.3 14073 14100 SARS-CoV-2_400_46_LEFT 2 + CTCAATGGTAACTGGTATGATTTCGGT -MN908947.3 14427 14457 SARS-CoV-2_400_46_RIGHT 2 - TGGAACACCATCAACAAATATTTTTCTCAC -MN908947.3 14375 14407 SARS-CoV-2_400_47_LEFT 1 + CTTTAATGTTTTATTCTCTACAGTGTTCCCAC -MN908947.3 14745 14775 SARS-CoV-2_400_47_RIGHT 1 - ATCCTGAGCAAAGAAGAAGTGTTTTAATTC -MN908947.3 14700 14725 SARS-CoV-2_400_48_LEFT 2 + GACTTTGCTGTGTCTAAGGGTTTCT -MN908947.3 15065 15095 SARS-CoV-2_400_48_RIGHT 2 - TTCTTTGCACTAATGGCATACTTAAGATTC -MN908947.3 15016 15045 SARS-CoV-2_400_49_LEFT 1 + CACTTTTCGCATATACAAAACGTAATGTC -MN908947.3 15386 15416 SARS-CoV-2_400_49_RIGHT 1 - CACTCATTAGCTAATCTATAGAAACGGTGT -MN908947.3 15342 15366 SARS-CoV-2_400_50_LEFT 2 + TCACTTGTTCTTGCTCGCAAACAT -MN908947.3 15716 15742 SARS-CoV-2_400_50_RIGHT 2 - TATTGAAACACACAACAGCATCGTCA -MN908947.3 15659 15688 SARS-CoV-2_400_51_LEFT 1 + CTTTGTGAATGAGTTTTACGCATATTTGC -MN908947.3 16028 16059 SARS-CoV-2_400_51_RIGHT 1 - AGGATGTTTAGTAAGTGGGTAAGCATCTATA -MN908947.3 15964 15998 SARS-CoV-2_400_52_LEFT 2 + GTTTTGTAGATGATATCGTAAAAACAGATGGTAC -MN908947.3 16331 16364 SARS-CoV-2_400_52_RIGHT 2 - AAGACTAATTTATGTGATGTTGATATGACATGG -MN908947.3 16285 16311 SARS-CoV-2_400_53_LEFT 1 + GTGCTTGCATACGTAGACCATTCTTA -MN908947.3 16650 16679 SARS-CoV-2_400_53_RIGHT 1 - GACAGTTTAAATGTCTCCTCAGTAGCTTT -MN908947.3 16603 16630 SARS-CoV-2_400_54_LEFT 2 + CTAACACCTGTACTGAAAGACTCAAGC -MN908947.3 16624 16647 SARS-CoV-2_400_54_LEFT_alt 2 + TCAAGCTTTTTGCAGCAGAAACG -MN908947.3 16985 17011 SARS-CoV-2_400_54_RIGHT 2 - AGATATTGAGTGTTGGGTATAAGCCA -MN908947.3 17004 17033 SARS-CoV-2_400_54_RIGHT_alt 2 - ACATTGCTAGAAAACTCATCTGAGATATT -MN908947.3 16929 16954 SARS-CoV-2_400_55_LEFT 1 + GTAATGCCATTAAGTGCACCTACAC -MN908947.3 17301 17329 SARS-CoV-2_400_55_RIGHT 1 - CAGGCAATGCATTTACAGTACAAAAGAC -MN908947.3 17182 17212 SARS-CoV-2_400_56_LEFT 2 + CACTATGTGAGAAGGCATTAAAATATTTGC -MN908947.3 17560 17582 SARS-CoV-2_400_56_RIGHT 2 - ACAATTTCAGCAGGACAACGCC -MN908947.3 17478 17507 SARS-CoV-2_400_57_LEFT 1 + GGCACACTAGAACCAGAATATTTCAATTC -MN908947.3 17859 17886 SARS-CoV-2_400_57_RIGHT 1 - AGTGGTTTGAGTGAATATGACATAGTC -MN908947.3 17813 17839 SARS-CoV-2_400_58_LEFT 2 + GGGACTACCAACTCAAACTGTTGATT -MN908947.3 18181 18212 SARS-CoV-2_400_58_RIGHT 2 - ATCATAGAGATGAGTCTTCTATAGGTCATGT -MN908947.3 18121 18153 SARS-CoV-2_400_59_LEFT 1 + GTGTTGACACTAAATTCAAAACTGAAGGTTTA -MN908947.3 18504 18527 SARS-CoV-2_400_59_RIGHT 1 - CGCACTACATTCCAAGGAAGTCC -MN908947.3 18460 18484 SARS-CoV-2_400_60_LEFT 2 + CGCCTGGAGATCAATTTAAACACC -MN908947.3 18835 18860 SARS-CoV-2_400_60_RIGHT 2 - GCATCACAACTAGCTACATGTGCAT -MN908947.3 18789 18815 SARS-CoV-2_400_61_LEFT 1 + GGTAACCTACAAAGCAACCATGATCT -MN908947.3 19170 19195 SARS-CoV-2_400_61_RIGHT 1 - TCCAAAATAGGCATACACCATCTGT -MN908947.3 19101 19134 SARS-CoV-2_400_62_LEFT 2 + CCTTGTAGTGACAAAGCTTATAAAATAGAAGAA -MN908947.3 19469 19495 SARS-CoV-2_400_62_RIGHT 2 - GTCTACAGACAGCACCACCTAAATTG -MN908947.3 19415 19449 SARS-CoV-2_400_63_LEFT 1 + AGTGTCAGATATAGATTATGTACCACTAAAGTCT -MN908947.3 19770 19796 SARS-CoV-2_400_63_RIGHT 1 - GCCCAAAGCTCAAATGCTACATTAAC -MN908947.3 19721 19750 SARS-CoV-2_400_64_LEFT 2 + AGTTGATGGTGTTGATGTAGAATTGTTTG -MN908947.3 20091 20121 SARS-CoV-2_400_64_RIGHT 2 - TAATGTGACTCCATTAAGACTAGCTTGTTT -MN908947.3 20028 20054 SARS-CoV-2_400_65_LEFT 1 + GCCCGTAATGGTGTTCTTATTACAGA -MN908947.3 20408 20441 SARS-CoV-2_400_65_RIGHT 1 - GTACTGTCCATAGGAATAAAATCTTCTAATTCA -MN908947.3 20358 20388 SARS-CoV-2_400_66_LEFT 2 + GGTTTACATCTACTGATTGGACTAGCTAAA -MN908947.3 20729 20758 SARS-CoV-2_400_66_RIGHT 2 - CACTATCACCATAATTTTGAAGGTCACAC -MN908947.3 20650 20676 SARS-CoV-2_400_67_LEFT_alt 1 + AATTACAATCTAGTCAAGCGTGGCAA -MN908947.3 20680 20708 SARS-CoV-2_400_67_LEFT 1 + GTGTTGCTATGCCTAATCTTTACAAAAT -MN908947.3 21018 21051 SARS-CoV-2_400_67_RIGHT_alt 1 - CATATCACTAATAATGAGATCCCATTTATTAGC -MN908947.3 21047 21080 SARS-CoV-2_400_67_RIGHT 1 - TTTGTAACATTTTTAGTCTTAGGGTCGTACATA -MN908947.3 20991 21018 SARS-CoV-2_400_68_LEFT 2 + ATTGGTGATTGTGCAACTGTACATACA -MN908947.3 21372 21402 SARS-CoV-2_400_68_RIGHT 2 - ACTCATGTCAAATAAAGAATAGGAAGACAA -MN908947.3 21322 21352 SARS-CoV-2_400_69_LEFT 1 + ATGTCATGCATGCAAATTACATATTTTGGA -MN908947.3 21696 21722 SARS-CoV-2_400_69_RIGHT 1 - AGTCCTGAGTTGAATGTAAAACTGAG -MN908947.3 21579 21607 SARS-CoV-2_400_70_LEFT 2 + TTTATTGCCACTAGTCTCTAGTCAGTGT -MN908947.3 21927 21960 SARS-CoV-2_400_70_RIGHT 2 - AATTCACAGACTTTAATAACAACATTAGTAGCG -MN908947.3 21866 21894 SARS-CoV-2_400_71_LEFT 1 + GAGGCTGGATTTTTGGTACTACTTTAGA -MN908947.3 22238 22266 SARS-CoV-2_400_71_RIGHT 1 - ATGTTAATACCTATTGGCAAATCTACCA -MN908947.3 22156 22189 SARS-CoV-2_400_72_LEFT 2 + GGTTATTTTAAAATATATTCTAAGCACACGCCT -MN908947.3 22517 22547 SARS-CoV-2_400_72_RIGHT 2 - ATCTAACAATAGATTCTGTTGGTTGGACTC -MN908947.3 22466 22494 SARS-CoV-2_400_73_LEFT 1 + CGTTGAAATCCTTCACTGTAGAAAAAGG -MN908947.3 22839 22866 SARS-CoV-2_400_73_RIGHT 1 - GCTATAACGCAGCCTGTAAAATCATCT -MN908947.3 22742 22774 SARS-CoV-2_400_74_LEFT 2 + ATGTCTATGCAGATTCATTTGTAATTAGAGGT -MN908947.3 23119 23140 SARS-CoV-2_400_74_RIGHT 2 - TCCACAAACAGTTGCTGGTGC -MN908947.3 22922 22954 SARS-CoV-2_400_75_LEFT 1 + GATTGTTTAGGAAGTCTAATCTCAAACCTTTT -MN908947.3 23296 23324 SARS-CoV-2_400_75_RIGHT 1 - TAATGTCAAGAATCTCAAGTGTCTGTGG -MN908947.3 23229 23258 SARS-CoV-2_400_76_LEFT 2 + CAAAAAGTTTCTGCCTTTCCAACAATTTG -MN908947.3 23609 23631 SARS-CoV-2_400_76_RIGHT 2 - TGACTAGCTACACTACGTGCCC -MN908947.3 23563 23589 SARS-CoV-2_400_77_LEFT 1 + GCAGGTATATGCGCTAGTTATCAGAC -MN908947.3 23914 23944 SARS-CoV-2_400_77_RIGHT 1 - AATTGGTGGTGTTTTGTAAATTTGTTTGAC -MN908947.3 23823 23853 SARS-CoV-2_400_78_LEFT 2 + GCAATATGGCAGTTTTTGTACACAATTAAA -MN908947.3 24209 24231 SARS-CoV-2_400_78_RIGHT 2 - GCACCAAAGGTCCAACCAGAAG -MN908947.3 24160 24189 SARS-CoV-2_400_79_LEFT 1 + GATGAAATGATTGCTCAATACACTTCTGC -MN908947.3 24535 24560 SARS-CoV-2_400_79_RIGHT 1 - TGCCTGTGATCAACCTATCAATTTG -MN908947.3 24442 24468 SARS-CoV-2_400_80_LEFT 2 + ACGCTTGTTAAACAACTTAGCTCCAA -MN908947.3 24815 24839 SARS-CoV-2_400_80_RIGHT 2 - CTTCACGAGGAAAGTGTGCTTTTC -MN908947.3 24751 24774 SARS-CoV-2_400_81_LEFT 1 + CATGTGACTTATGTCCCTGCACA -MN908947.3 25120 25151 SARS-CoV-2_400_81_RIGHT 1 - GAGATTCATTTAAATTCTTGGCAACCTCATT -MN908947.3 25053 25082 SARS-CoV-2_400_82_LEFT 2 + TGATTTAGGTGACATCTCTGGCATTAATG -MN908947.3 25423 25452 SARS-CoV-2_400_82_RIGHT 2 - GATTTCACCTTGCTTCAAAGTTACAGTTC -MN908947.3 25372 25402 SARS-CoV-2_400_83_LEFT 1 + CATTACACATAAACGAACTTATGGATTTGT -MN908947.3 25744 25777 SARS-CoV-2_400_83_RIGHT 1 - GCCAAAGCCTCATTATTATTCTTACAAAGTTTA -MN908947.3 25696 25724 SARS-CoV-2_400_84_LEFT 2 + AAGCCCCTTTTCTCTATCTTTATGCTTT -MN908947.3 25718 25743 SARS-CoV-2_400_84_LEFT_alt 2 + TGCTTTAGTCTACTTCTTGCAGAGT -MN908947.3 26059 26086 SARS-CoV-2_400_84_RIGHT 2 - TGAAGAAGGTAACATGTTCAACACCAG -MN908947.3 26107 26131 SARS-CoV-2_400_84_RIGHT_alt 2 - GAATTTGGACATGTTCTTCAGGCT -MN908947.3 26011 26039 SARS-CoV-2_400_85_LEFT 1 + TCACTTCAGACTATTACCAGCTGTACTC -MN908947.3 26382 26411 SARS-CoV-2_400_85_RIGHT 1 - AAAGAAGGTTTTACAAGACTCACGTTAAC -MN908947.3 26339 26362 SARS-CoV-2_400_86_LEFT 2 + CATCCTTACTGCGCTTCGATTGT -MN908947.3 26730 26756 SARS-CoV-2_400_86_RIGHT 2 - ACCGGTGATCCAATTTATTCTGTAAA -MN908947.3 26593 26621 SARS-CoV-2_400_87_LEFT_alt 1 + AGGTTTCCTATTCCTTACATGGATTTGT -MN908947.3 26639 26672 SARS-CoV-2_400_87_LEFT 1 + GCCAACAGGAATAGGTTTTTGTATATAATTAAG -MN908947.3 26989 27009 SARS-CoV-2_400_87_RIGHT_alt 1 - CCTTGATGTCACAGCGTCCT -MN908947.3 27011 27038 SARS-CoV-2_400_87_RIGHT 1 - TGTAGCAACAGTGATTTCTTTAGGCAG -MN908947.3 26965 26989 SARS-CoV-2_400_88_LEFT 2 + TCTTCGTATTGCTGGACACCATCT -MN908947.3 27342 27372 SARS-CoV-2_400_88_RIGHT 2 - TGGTTGCTCTTCATCTAATTGAGAATATTT -MN908947.3 27218 27251 SARS-CoV-2_400_89_LEFT 1 + CTTTCAGGTTACTATAGCAGAGATATTACTAAT -MN908947.3 27583 27603 SARS-CoV-2_400_89_RIGHT 1 - GCCGTCAGGACAAGCAAAAG -MN908947.3 27530 27558 SARS-CoV-2_400_90_LEFT 2 + TCATCCTCTAGCTGATAACAAATTTGCA -MN908947.3 27927 27950 SARS-CoV-2_400_90_RIGHT 2 - TTCTTGGTGAAATGCAGCTACAG -MN908947.3 27832 27860 SARS-CoV-2_400_91_LEFT 1 + TATCTTTTGGTTCTCACTTGAACTGCAA -MN908947.3 28209 28237 SARS-CoV-2_400_91_RIGHT 1 - CGAACGTCATGATACTCTAAAAAGTCTT -MN908947.3 28135 28166 SARS-CoV-2_400_92_LEFT 2 + TTCCTGTTTACCTTTTACAATTAATTGCCAG -MN908947.3 28513 28539 SARS-CoV-2_400_92_RIGHT 2 - CTTCGGTAGTAGCCAATTTGGTCATC -MN908947.3 28473 28493 SARS-CoV-2_400_93_LEFT 1 + TCGAGGACAAGGCGTTCCAA -MN908947.3 28849 28873 SARS-CoV-2_400_93_RIGHT 1 - GCCTGGAGTTGAATTTCTTGAACT -MN908947.3 28808 28829 SARS-CoV-2_400_94_LEFT 2 + GCAGTCAAGCCTCTTCTCGTT -MN908947.3 29203 29224 SARS-CoV-2_400_94_RIGHT 2 - CATTCCGAAGAACGCTGAAGC -MN908947.3 29159 29183 SARS-CoV-2_400_95_LEFT 1 + CTGATTACAAACATTGGCCGCAAA -MN908947.3 29538 29559 SARS-CoV-2_400_95_RIGHT 1 - ATCTGCCTTGTGTGGTCTGCA -MN908947.3 29462 29486 SARS-CoV-2_400_96_LEFT_alt 2 + CTGCAGATTTGGATGATTTCTCCA -MN908947.3 29493 29515 SARS-CoV-2_400_96_LEFT 2 + GCAACAATCCATGAGCAGTGCT -MN908947.3 29840 29873 SARS-CoV-2_400_96_RIGHT 2 - TTTGTCATTCTCCTAAGAAGCTATTAAAATCAC - diff --git a/sars-cov-2/artic/v5.1.0_400/scheme.bed b/sars-cov-2/artic/v5.1.0_400/scheme.bed deleted file mode 100644 index 04ceaaa..0000000 --- a/sars-cov-2/artic/v5.1.0_400/scheme.bed +++ /dev/null @@ -1,207 +0,0 @@ -MN908947.3 23 48 SARS-CoV-2_400_1_LEFT 1 + -MN908947.3 47 78 SARS-CoV-2_400_1_LEFT_alt 1 + -MN908947.3 398 423 SARS-CoV-2_400_1_RIGHT 1 - -MN908947.3 419 447 SARS-CoV-2_400_1_RIGHT_alt 1 - -MN908947.3 344 366 SARS-CoV-2_400_2_LEFT 2 + -MN908947.3 707 732 SARS-CoV-2_400_2_RIGHT 2 - -MN908947.3 638 661 SARS-CoV-2_400_3_LEFT_alt 1 + -MN908947.3 664 687 SARS-CoV-2_400_3_LEFT 1 + -MN908947.3 1018 1047 SARS-CoV-2_400_3_RIGHT 1 - -MN908947.3 970 995 SARS-CoV-2_400_4_LEFT 2 + -MN908947.3 1340 1370 SARS-CoV-2_400_4_RIGHT 2 - -MN908947.3 1292 1320 SARS-CoV-2_400_5_LEFT 1 + -MN908947.3 1660 1692 SARS-CoV-2_400_5_RIGHT 1 - -MN908947.3 1574 1596 SARS-CoV-2_400_6_LEFT_alt 2 + -MN908947.3 1609 1640 SARS-CoV-2_400_6_LEFT 2 + -MN908947.3 1945 1972 SARS-CoV-2_400_6_RIGHT_alt 2 - -MN908947.3 1965 1998 SARS-CoV-2_400_6_RIGHT 2 - -MN908947.3 1921 1945 SARS-CoV-2_400_7_LEFT 1 + -MN908947.3 2283 2316 SARS-CoV-2_400_7_RIGHT 1 - -MN908947.3 2229 2252 SARS-CoV-2_400_8_LEFT 2 + -MN908947.3 2603 2629 SARS-CoV-2_400_8_RIGHT 2 - -MN908947.3 2533 2563 SARS-CoV-2_400_9_LEFT 1 + -MN908947.3 2900 2933 SARS-CoV-2_400_9_RIGHT 1 - -MN908947.3 2854 2880 SARS-CoV-2_400_10_LEFT 2 + -MN908947.3 3233 3254 SARS-CoV-2_400_10_RIGHT 2 - -MN908947.3 3184 3213 SARS-CoV-2_400_11_LEFT 1 + -MN908947.3 3560 3584 SARS-CoV-2_400_11_RIGHT 1 - -MN908947.3 3510 3540 SARS-CoV-2_400_12_LEFT 2 + -MN908947.3 3883 3913 SARS-CoV-2_400_12_RIGHT 2 - -MN908947.3 3791 3824 SARS-CoV-2_400_13_LEFT 1 + -MN908947.3 4147 4180 SARS-CoV-2_400_13_RIGHT 1 - -MN908947.3 4079 4108 SARS-CoV-2_400_14_LEFT 2 + -MN908947.3 4457 4488 SARS-CoV-2_400_14_RIGHT 2 - -MN908947.3 4403 4425 SARS-CoV-2_400_15_LEFT 1 + -MN908947.3 4776 4803 SARS-CoV-2_400_15_RIGHT 1 - -MN908947.3 4723 4756 SARS-CoV-2_400_16_LEFT 2 + -MN908947.3 5089 5119 SARS-CoV-2_400_16_RIGHT 2 - -MN908947.3 5036 5063 SARS-CoV-2_400_17_LEFT 1 + -MN908947.3 5398 5429 SARS-CoV-2_400_17_RIGHT 1 - -MN908947.3 5344 5370 SARS-CoV-2_400_18_LEFT 2 + -MN908947.3 5716 5744 SARS-CoV-2_400_18_RIGHT 2 - -MN908947.3 5671 5696 SARS-CoV-2_400_19_LEFT 1 + -MN908947.3 6031 6062 SARS-CoV-2_400_19_RIGHT 1 - -MN908947.3 5891 5923 SARS-CoV-2_400_20_LEFT 2 + -MN908947.3 6257 6288 SARS-CoV-2_400_20_RIGHT 2 - -MN908947.3 6204 6237 SARS-CoV-2_400_21_LEFT 1 + -MN908947.3 6562 6595 SARS-CoV-2_400_21_RIGHT 1 - -MN908947.3 6515 6542 SARS-CoV-2_400_22_LEFT 2 + -MN908947.3 6882 6915 SARS-CoV-2_400_22_RIGHT 2 - -MN908947.3 6823 6854 SARS-CoV-2_400_23_LEFT 1 + -MN908947.3 7199 7229 SARS-CoV-2_400_23_RIGHT 1 - -MN908947.3 7145 7179 SARS-CoV-2_400_24_LEFT 2 + -MN908947.3 7518 7545 SARS-CoV-2_400_24_RIGHT 2 - -MN908947.3 7456 7482 SARS-CoV-2_400_25_LEFT 1 + -MN908947.3 7819 7850 SARS-CoV-2_400_25_RIGHT 1 - -MN908947.3 7768 7797 SARS-CoV-2_400_26_LEFT 2 + -MN908947.3 8136 8169 SARS-CoV-2_400_26_RIGHT 2 - -MN908947.3 8085 8112 SARS-CoV-2_400_27_LEFT 1 + -MN908947.3 8468 8498 SARS-CoV-2_400_27_RIGHT 1 - -MN908947.3 8406 8436 SARS-CoV-2_400_28_LEFT 2 + -MN908947.3 8781 8806 SARS-CoV-2_400_28_RIGHT 2 - -MN908947.3 8732 8761 SARS-CoV-2_400_29_LEFT 1 + -MN908947.3 9107 9129 SARS-CoV-2_400_29_RIGHT 1 - -MN908947.3 9023 9052 SARS-CoV-2_400_30_LEFT 2 + -MN908947.3 9397 9423 SARS-CoV-2_400_30_RIGHT 2 - -MN908947.3 9299 9324 SARS-CoV-2_400_31_LEFT_alt 1 + -MN908947.3 9322 9355 SARS-CoV-2_400_31_LEFT 1 + -MN908947.3 9673 9706 SARS-CoV-2_400_31_RIGHT 1 - -MN908947.3 9571 9604 SARS-CoV-2_400_32_LEFT 2 + -MN908947.3 9949 9971 SARS-CoV-2_400_32_RIGHT 2 - -MN908947.3 9896 9929 SARS-CoV-2_400_33_LEFT 1 + -MN908947.3 10266 10295 SARS-CoV-2_400_33_RIGHT 1 - -MN908947.3 10215 10245 SARS-CoV-2_400_34_LEFT 2 + -MN908947.3 10587 10615 SARS-CoV-2_400_34_RIGHT 2 - -MN908947.3 10527 10557 SARS-CoV-2_400_35_LEFT 1 + -MN908947.3 10897 10927 SARS-CoV-2_400_35_RIGHT 1 - -MN908947.3 10832 10865 SARS-CoV-2_400_36_LEFT 2 + -MN908947.3 11201 11232 SARS-CoV-2_400_36_RIGHT 2 - -MN908947.3 11152 11181 SARS-CoV-2_400_37_LEFT 1 + -MN908947.3 11514 11536 SARS-CoV-2_400_37_RIGHT 1 - -MN908947.3 11463 11494 SARS-CoV-2_400_38_LEFT 2 + -MN908947.3 11832 11863 SARS-CoV-2_400_38_RIGHT 2 - -MN908947.3 11785 11811 SARS-CoV-2_400_39_LEFT 1 + -MN908947.3 12161 12185 SARS-CoV-2_400_39_RIGHT 1 - -MN908947.3 12112 12137 SARS-CoV-2_400_40_LEFT 2 + -MN908947.3 12477 12510 SARS-CoV-2_400_40_RIGHT 2 - -MN908947.3 12419 12444 SARS-CoV-2_400_41_LEFT 1 + -MN908947.3 12794 12819 SARS-CoV-2_400_41_RIGHT 1 - -MN908947.3 12752 12774 SARS-CoV-2_400_42_LEFT 2 + -MN908947.3 13121 13146 SARS-CoV-2_400_42_RIGHT 2 - -MN908947.3 13075 13099 SARS-CoV-2_400_43_LEFT 1 + -MN908947.3 13458 13480 SARS-CoV-2_400_43_RIGHT 1 - -MN908947.3 13415 13435 SARS-CoV-2_400_44_LEFT 2 + -MN908947.3 13787 13815 SARS-CoV-2_400_44_RIGHT 2 - -MN908947.3 13738 13767 SARS-CoV-2_400_45_LEFT 1 + -MN908947.3 14120 14144 SARS-CoV-2_400_45_RIGHT 1 - -MN908947.3 14073 14100 SARS-CoV-2_400_46_LEFT 2 + -MN908947.3 14427 14457 SARS-CoV-2_400_46_RIGHT 2 - -MN908947.3 14375 14407 SARS-CoV-2_400_47_LEFT 1 + -MN908947.3 14745 14775 SARS-CoV-2_400_47_RIGHT 1 - -MN908947.3 14700 14725 SARS-CoV-2_400_48_LEFT 2 + -MN908947.3 15065 15095 SARS-CoV-2_400_48_RIGHT 2 - -MN908947.3 15016 15045 SARS-CoV-2_400_49_LEFT 1 + -MN908947.3 15386 15416 SARS-CoV-2_400_49_RIGHT 1 - -MN908947.3 15342 15366 SARS-CoV-2_400_50_LEFT 2 + -MN908947.3 15716 15742 SARS-CoV-2_400_50_RIGHT 2 - -MN908947.3 15659 15688 SARS-CoV-2_400_51_LEFT 1 + -MN908947.3 16028 16059 SARS-CoV-2_400_51_RIGHT 1 - -MN908947.3 15964 15998 SARS-CoV-2_400_52_LEFT 2 + -MN908947.3 16331 16364 SARS-CoV-2_400_52_RIGHT 2 - -MN908947.3 16285 16311 SARS-CoV-2_400_53_LEFT 1 + -MN908947.3 16650 16679 SARS-CoV-2_400_53_RIGHT 1 - -MN908947.3 16603 16630 SARS-CoV-2_400_54_LEFT 2 + -MN908947.3 16624 16647 SARS-CoV-2_400_54_LEFT_alt 2 + -MN908947.3 16985 17011 SARS-CoV-2_400_54_RIGHT 2 - -MN908947.3 17004 17033 SARS-CoV-2_400_54_RIGHT_alt 2 - -MN908947.3 16929 16954 SARS-CoV-2_400_55_LEFT 1 + -MN908947.3 17301 17329 SARS-CoV-2_400_55_RIGHT 1 - -MN908947.3 17182 17212 SARS-CoV-2_400_56_LEFT 2 + -MN908947.3 17560 17582 SARS-CoV-2_400_56_RIGHT 2 - -MN908947.3 17478 17507 SARS-CoV-2_400_57_LEFT 1 + -MN908947.3 17859 17886 SARS-CoV-2_400_57_RIGHT 1 - -MN908947.3 17813 17839 SARS-CoV-2_400_58_LEFT 2 + -MN908947.3 18181 18212 SARS-CoV-2_400_58_RIGHT 2 - -MN908947.3 18121 18153 SARS-CoV-2_400_59_LEFT 1 + -MN908947.3 18504 18527 SARS-CoV-2_400_59_RIGHT 1 - -MN908947.3 18460 18484 SARS-CoV-2_400_60_LEFT 2 + -MN908947.3 18835 18860 SARS-CoV-2_400_60_RIGHT 2 - -MN908947.3 18789 18815 SARS-CoV-2_400_61_LEFT 1 + -MN908947.3 19170 19195 SARS-CoV-2_400_61_RIGHT 1 - -MN908947.3 19101 19134 SARS-CoV-2_400_62_LEFT 2 + -MN908947.3 19469 19495 SARS-CoV-2_400_62_RIGHT 2 - -MN908947.3 19415 19449 SARS-CoV-2_400_63_LEFT 1 + -MN908947.3 19770 19796 SARS-CoV-2_400_63_RIGHT 1 - -MN908947.3 19721 19750 SARS-CoV-2_400_64_LEFT 2 + -MN908947.3 20091 20121 SARS-CoV-2_400_64_RIGHT 2 - -MN908947.3 20028 20054 SARS-CoV-2_400_65_LEFT 1 + -MN908947.3 20408 20441 SARS-CoV-2_400_65_RIGHT 1 - -MN908947.3 20358 20388 SARS-CoV-2_400_66_LEFT 2 + -MN908947.3 20729 20758 SARS-CoV-2_400_66_RIGHT 2 - -MN908947.3 20650 20676 SARS-CoV-2_400_67_LEFT_alt 1 + -MN908947.3 20680 20708 SARS-CoV-2_400_67_LEFT 1 + -MN908947.3 21018 21051 SARS-CoV-2_400_67_RIGHT_alt 1 - -MN908947.3 21047 21080 SARS-CoV-2_400_67_RIGHT 1 - -MN908947.3 20991 21018 SARS-CoV-2_400_68_LEFT 2 + -MN908947.3 21372 21402 SARS-CoV-2_400_68_RIGHT 2 - -MN908947.3 21322 21352 SARS-CoV-2_400_69_LEFT 1 + -MN908947.3 21696 21722 SARS-CoV-2_400_69_RIGHT 1 - -MN908947.3 21579 21607 SARS-CoV-2_400_70_LEFT 2 + -MN908947.3 21927 21960 SARS-CoV-2_400_70_RIGHT 2 - -MN908947.3 21866 21894 SARS-CoV-2_400_71_LEFT 1 + -MN908947.3 22238 22266 SARS-CoV-2_400_71_RIGHT 1 - -MN908947.3 22156 22189 SARS-CoV-2_400_72_LEFT 2 + -MN908947.3 22517 22547 SARS-CoV-2_400_72_RIGHT 2 - -MN908947.3 22466 22494 SARS-CoV-2_400_73_LEFT 1 + -MN908947.3 22839 22866 SARS-CoV-2_400_73_RIGHT 1 - -MN908947.3 22742 22774 SARS-CoV-2_400_74_LEFT 2 + -MN908947.3 23119 23140 SARS-CoV-2_400_74_RIGHT 2 - -MN908947.3 22922 22954 SARS-CoV-2_400_75_LEFT 1 + -MN908947.3 23296 23324 SARS-CoV-2_400_75_RIGHT 1 - -MN908947.3 23229 23258 SARS-CoV-2_400_76_LEFT 2 + -MN908947.3 23609 23631 SARS-CoV-2_400_76_RIGHT 2 - -MN908947.3 23563 23589 SARS-CoV-2_400_77_LEFT 1 + -MN908947.3 23914 23944 SARS-CoV-2_400_77_RIGHT 1 - -MN908947.3 23823 23853 SARS-CoV-2_400_78_LEFT 2 + -MN908947.3 24209 24231 SARS-CoV-2_400_78_RIGHT 2 - -MN908947.3 24160 24189 SARS-CoV-2_400_79_LEFT 1 + -MN908947.3 24535 24560 SARS-CoV-2_400_79_RIGHT 1 - -MN908947.3 24442 24468 SARS-CoV-2_400_80_LEFT 2 + -MN908947.3 24815 24839 SARS-CoV-2_400_80_RIGHT 2 - -MN908947.3 24751 24774 SARS-CoV-2_400_81_LEFT 1 + -MN908947.3 25120 25151 SARS-CoV-2_400_81_RIGHT 1 - -MN908947.3 25053 25082 SARS-CoV-2_400_82_LEFT 2 + -MN908947.3 25423 25452 SARS-CoV-2_400_82_RIGHT 2 - -MN908947.3 25372 25402 SARS-CoV-2_400_83_LEFT 1 + -MN908947.3 25744 25777 SARS-CoV-2_400_83_RIGHT 1 - -MN908947.3 25696 25724 SARS-CoV-2_400_84_LEFT 2 + -MN908947.3 25718 25743 SARS-CoV-2_400_84_LEFT_alt 2 + -MN908947.3 26059 26086 SARS-CoV-2_400_84_RIGHT 2 - -MN908947.3 26107 26131 SARS-CoV-2_400_84_RIGHT_alt 2 - -MN908947.3 26011 26039 SARS-CoV-2_400_85_LEFT 1 + -MN908947.3 26382 26411 SARS-CoV-2_400_85_RIGHT 1 - -MN908947.3 26339 26362 SARS-CoV-2_400_86_LEFT 2 + -MN908947.3 26730 26756 SARS-CoV-2_400_86_RIGHT 2 - -MN908947.3 26593 26621 SARS-CoV-2_400_87_LEFT_alt 1 + -MN908947.3 26639 26672 SARS-CoV-2_400_87_LEFT 1 + -MN908947.3 26989 27009 SARS-CoV-2_400_87_RIGHT_alt 1 - -MN908947.3 27011 27038 SARS-CoV-2_400_87_RIGHT 1 - -MN908947.3 26965 26989 SARS-CoV-2_400_88_LEFT 2 + -MN908947.3 27342 27372 SARS-CoV-2_400_88_RIGHT 2 - -MN908947.3 27218 27251 SARS-CoV-2_400_89_LEFT 1 + -MN908947.3 27583 27603 SARS-CoV-2_400_89_RIGHT 1 - -MN908947.3 27530 27558 SARS-CoV-2_400_90_LEFT 2 + -MN908947.3 27927 27950 SARS-CoV-2_400_90_RIGHT 2 - -MN908947.3 27832 27860 SARS-CoV-2_400_91_LEFT 1 + -MN908947.3 28209 28237 SARS-CoV-2_400_91_RIGHT 1 - -MN908947.3 28135 28166 SARS-CoV-2_400_92_LEFT 2 + -MN908947.3 28513 28539 SARS-CoV-2_400_92_RIGHT 2 - -MN908947.3 28473 28493 SARS-CoV-2_400_93_LEFT 1 + -MN908947.3 28849 28873 SARS-CoV-2_400_93_RIGHT 1 - -MN908947.3 28808 28829 SARS-CoV-2_400_94_LEFT 2 + -MN908947.3 29203 29224 SARS-CoV-2_400_94_RIGHT 2 - -MN908947.3 29159 29183 SARS-CoV-2_400_95_LEFT 1 + -MN908947.3 29538 29559 SARS-CoV-2_400_95_RIGHT 1 - -MN908947.3 29462 29486 SARS-CoV-2_400_96_LEFT_alt 2 + -MN908947.3 29493 29515 SARS-CoV-2_400_96_LEFT 2 + -MN908947.3 29840 29873 SARS-CoV-2_400_96_RIGHT 2 - diff --git a/sars-cov-2/artic/v5.2.0_1200/info.yml b/sars-cov-2/artic/v5.2.0_1200/info.yml deleted file mode 100644 index 58eb905..0000000 --- a/sars-cov-2/artic/v5.2.0_1200/info.yml +++ /dev/null @@ -1,13 +0,0 @@ -schema_version: 0.9.0 -name: artic-v5.2.0_1200 -organism: sars-cov-2 -developers: -- organisation_name: ARTIC network - home_page: https://artic.network/ -amplicon_size: 1200 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.2.0_1200 -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -primer_scheme_status: DEPRECATED -primer_checksum: primaschema:b33c1d942605ce25 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/artic/v5.2.0_1200/primer.bed b/sars-cov-2/artic/v5.2.0_1200/primer.bed deleted file mode 100644 index 29555de..0000000 --- a/sars-cov-2/artic/v5.2.0_1200/primer.bed +++ /dev/null @@ -1,58 +0,0 @@ -MN908947.3 45 73 SARS-CoV-2_1200_1_LEFT 1 + ATCTCTTGTAGATCTGTTCTCTAAACGA -MN908947.3 1157 1185 SARS-CoV-2_1200_1_RIGHT 1 - GCAACTGGATAGACAGATCGAATTCTAC -MN908947.3 1073 1103 SARS-CoV-2_1200_2_LEFT 2 + GTCCAAATTTTGTATTTCCCTTAAATTCCA -MN908947.3 2185 2213 SARS-CoV-2_1200_2_RIGHT 2 - TAACAATTTCCCAACCGTCTCTAAGAAA -MN908947.3 2105 2135 SARS-CoV-2_1200_3_LEFT 1 + CTAACATCTTTGGCACTGTTTATGAAAAAC -MN908947.3 3226 3246 SARS-CoV-2_1200_3_RIGHT 1 - CTGCCGTCTTGTTGACCAAC -MN908947.3 3154 3176 SARS-CoV-2_1200_4_LEFT 2 + GCCACTTCTGCTGCTCTTCAAC -MN908947.3 4270 4294 SARS-CoV-2_1200_4_RIGHT 2 - CTTTGCCTCCTCTACAGTGTAACC -MN908947.3 4187 4211 SARS-CoV-2_1200_5_LEFT 1 + GCACTACTGAAATGCTAGCGAAAG -MN908947.3 5299 5327 SARS-CoV-2_1200_5_RIGHT 1 - ACTCTATTTGTTGGAGTGTTAACAATGC -MN908947.3 5198 5229 SARS-CoV-2_1200_6_LEFT 2 + GGTACATGTCAGCATTAAATCACACTAAAAA -MN908947.3 6329 6356 SARS-CoV-2_1200_6_RIGHT 2 - CTGACTTCAGTACATCAAACGAATTTG -MN908947.3 6250 6279 SARS-CoV-2_1200_7_LEFT 1 + AATGCAACTAATAAAGCCACGTATAAACC -MN908947.3 7357 7390 SARS-CoV-2_1200_7_RIGHT 1 - GGCCATTTGTACAAGATTAATTATTAACCACAT -MN908947.3 7282 7306 SARS-CoV-2_1200_8_LEFT 2 + GTACTTGGATTGGCTGCAATCATG -MN908947.3 8393 8423 SARS-CoV-2_1200_8_RIGHT 2 - ACATGAAATCTTTAACGTTCCATATCAAAG -MN908947.3 8320 8343 SARS-CoV-2_1200_9_LEFT 1 + CGTGACCTTGGTGCTTGTATTGA -MN908947.3 9430 9460 SARS-CoV-2_1200_9_RIGHT 1 - CATAAAATAGTAGGCAAGGCATGTTACTAC -MN908947.3 9347 9380 SARS-CoV-2_1200_10_LEFT 2 + CTAATATGTTTACACCACTAATTCAACCTATTG -MN908947.3 10461 10488 SARS-CoV-2_1200_10_RIGHT 2 - CATGAACCATTAAGGAATGAACCCTTA -MN908947.3 10381 10411 SARS-CoV-2_1200_11_LEFT 1 + CAGACTTTTTCAGTGTTAGCTTGTTACAAT -MN908947.3 11474 11507 SARS-CoV-2_1200_11_RIGHT 1 - CTACACCTGAGTAGTTAGAAGTAACAGAGATTA -MN908947.3 11390 11417 SARS-CoV-2_1200_12_LEFT 2 + GGACACTTATGAATGTCTTGACACTCG -MN908947.3 12498 12530 SARS-CoV-2_1200_12_RIGHT 2 - ATGTTGTACCATCACACGTATTTTTATATGTG -MN908947.3 12419 12444 SARS-CoV-2_1200_13_LEFT 1 + CAAGAGATGGTTGTGTTCCCTTGAA -MN908947.3 13530 13559 SARS-CoV-2_1200_13_RIGHT 1 - TCATTGTAGATGTCAAAAGCCCTGTATAC -MN908947.3 13458 13480 SARS-CoV-2_1200_14_LEFT 2 + GTTTTTAAACGGGTTTGCGGTG -MN908947.3 14579 14599 SARS-CoV-2_1200_14_RIGHT 2 - GATTACCAGAAGCAGCGTGC -MN908947.3 14491 14524 SARS-CoV-2_1200_15_LEFT 1 + TAGGTGTTGTACATAATCAGGATGTAAACTTAC -MN908947.3 15601 15631 SARS-CoV-2_1200_15_RIGHT 1 - GACACTCATAAAGTCTGTGTTGTAAATTGC -MN908947.3 15531 15551 SARS-CoV-2_1200_16_LEFT 2 + CAAGCTGTCACGGCCAATGT -MN908947.3 16646 16671 SARS-CoV-2_1200_16_RIGHT 2 - AAATGTCTCCTCAGTAGCTTTGAGC -MN908947.3 16571 16596 SARS-CoV-2_1200_17_LEFT 1 + TGACTGGACAAATGCTGGTGATTAC -MN908947.3 17686 17711 SARS-CoV-2_1200_17_RIGHT 1 - TGTGGCCTGTTAATTGCAGATGAAA -MN908947.3 17595 17627 SARS-CoV-2_1200_18_LEFT 2 + GCTTTGGTTTATGATAATAAGCTTAAAGCACA -MN908947.3 18712 18737 SARS-CoV-2_1200_18_RIGHT 2 - AATCCAATAGAATGATGCCAACAGG -MN908947.3 18636 18658 SARS-CoV-2_1200_19_LEFT 1 + AAAATAGGACCTGAGCGCACCT -MN908947.3 19762 19790 SARS-CoV-2_1200_19_RIGHT 1 - AGCTCAAATGCTACATTAACAGGTAATG -MN908947.3 19679 19712 SARS-CoV-2_1200_20_LEFT 2 + TGAAGTACCAGTTTCTATCATTAATAACACTGT -MN908947.3 20787 20819 SARS-CoV-2_1200_20_RIGHT 2 - AAATATTGACACAGTTGAGTATATTTTGCGAC -MN908947.3 20682 20711 SARS-CoV-2_1200_21_LEFT 1 + GTTGCTATGCCTAATCTTTACAAAATGCA -MN908947.3 21801 21828 SARS-CoV-2_1200_21_RIGHT 1 - CCATCATTAAATGGTAGGACAGGGTTA -MN908947.3 21695 21723 SARS-CoV-2_1200_22_LEFT 2 + CCTCAGTTTTACATTCAACTCAGGACTT -MN908947.3 22825 22858 SARS-CoV-2_1200_22_RIGHT 2 - GCAGCCTGTAAAATCATCTGGTAATTTATAATT -MN908947.3 22742 22774 SARS-CoV-2_1200_23_LEFT 1 + ATGTCTATGCAGATTCATTTGTAATTAGAGGT -MN908947.3 23868 23895 SARS-CoV-2_1200_23_RIGHT 1 - GTGTTTTTGTCTTGTTCAACAGCTATT -MN908947.3 23784 23811 SARS-CoV-2_1200_24_LEFT 2 + CATTTGTGGTGATTCAACTGAATGCAG -MN908947.3 24875 24905 SARS-CoV-2_1200_24_RIGHT 2 - TGATTTGTGGTTCATAAAAATTCCTTTGTG -MN908947.3 24797 24822 SARS-CoV-2_1200_25_LEFT 1 + CTGCCATTTGTCATGATGGAAAAGC -MN908947.3 25911 25937 SARS-CoV-2_1200_25_RIGHT 1 - TGTTCAGAAATAGGACTTGTTGTGCC -MN908947.3 25784 25809 SARS-CoV-2_1200_26_LEFT 2 + GAAATGCCGTTCCAAAAACCCATTA -MN908947.3 26899 26924 SARS-CoV-2_1200_26_RIGHT 2 - TAGAAGCGGTCTGGTCAGAATAGTG -MN908947.3 26818 26840 SARS-CoV-2_1200_27_LEFT 1 + TTTCAGACTGTTTGCGCGTACG -MN908947.3 27934 27962 SARS-CoV-2_1200_27_RIGHT 1 - CTGTAAACTACATTCTTGGTGAAATGCA -MN908947.3 27832 27860 SARS-CoV-2_1200_28_LEFT 2 + TATCTTTTGGTTCTCACTTGAACTGCAA -MN908947.3 28945 28969 SARS-CoV-2_1200_28_RIGHT 2 - GCTCTCAAGCTGGTTCAATCTGTC -MN908947.3 28702 28723 SARS-CoV-2_1200_29_LEFT 1 + GATCACATTGGCACCCGCAAT -MN908947.3 29779 29802 SARS-CoV-2_1200_29_RIGHT 1 - GGCTCTTCCATATAGGCAGCTCT diff --git a/sars-cov-2/artic/v5.2.0_1200/scheme.bed b/sars-cov-2/artic/v5.2.0_1200/scheme.bed deleted file mode 100644 index 7bb017b..0000000 --- a/sars-cov-2/artic/v5.2.0_1200/scheme.bed +++ /dev/null @@ -1,58 +0,0 @@ -MN908947.3 45 73 SARS-CoV-2_1200_1_LEFT 1 + -MN908947.3 1157 1185 SARS-CoV-2_1200_1_RIGHT 1 - -MN908947.3 1073 1103 SARS-CoV-2_1200_2_LEFT 2 + -MN908947.3 2185 2213 SARS-CoV-2_1200_2_RIGHT 2 - -MN908947.3 2105 2135 SARS-CoV-2_1200_3_LEFT 1 + -MN908947.3 3226 3246 SARS-CoV-2_1200_3_RIGHT 1 - -MN908947.3 3154 3176 SARS-CoV-2_1200_4_LEFT 2 + -MN908947.3 4270 4294 SARS-CoV-2_1200_4_RIGHT 2 - -MN908947.3 4187 4211 SARS-CoV-2_1200_5_LEFT 1 + -MN908947.3 5299 5327 SARS-CoV-2_1200_5_RIGHT 1 - -MN908947.3 5198 5229 SARS-CoV-2_1200_6_LEFT 2 + -MN908947.3 6329 6356 SARS-CoV-2_1200_6_RIGHT 2 - -MN908947.3 6250 6279 SARS-CoV-2_1200_7_LEFT 1 + -MN908947.3 7357 7390 SARS-CoV-2_1200_7_RIGHT 1 - -MN908947.3 7282 7306 SARS-CoV-2_1200_8_LEFT 2 + -MN908947.3 8393 8423 SARS-CoV-2_1200_8_RIGHT 2 - -MN908947.3 8320 8343 SARS-CoV-2_1200_9_LEFT 1 + -MN908947.3 9430 9460 SARS-CoV-2_1200_9_RIGHT 1 - -MN908947.3 9347 9380 SARS-CoV-2_1200_10_LEFT 2 + -MN908947.3 10461 10488 SARS-CoV-2_1200_10_RIGHT 2 - -MN908947.3 10381 10411 SARS-CoV-2_1200_11_LEFT 1 + -MN908947.3 11474 11507 SARS-CoV-2_1200_11_RIGHT 1 - -MN908947.3 11390 11417 SARS-CoV-2_1200_12_LEFT 2 + -MN908947.3 12498 12530 SARS-CoV-2_1200_12_RIGHT 2 - -MN908947.3 12419 12444 SARS-CoV-2_1200_13_LEFT 1 + -MN908947.3 13530 13559 SARS-CoV-2_1200_13_RIGHT 1 - -MN908947.3 13458 13480 SARS-CoV-2_1200_14_LEFT 2 + -MN908947.3 14579 14599 SARS-CoV-2_1200_14_RIGHT 2 - -MN908947.3 14491 14524 SARS-CoV-2_1200_15_LEFT 1 + -MN908947.3 15601 15631 SARS-CoV-2_1200_15_RIGHT 1 - -MN908947.3 15531 15551 SARS-CoV-2_1200_16_LEFT 2 + -MN908947.3 16646 16671 SARS-CoV-2_1200_16_RIGHT 2 - -MN908947.3 16571 16596 SARS-CoV-2_1200_17_LEFT 1 + -MN908947.3 17686 17711 SARS-CoV-2_1200_17_RIGHT 1 - -MN908947.3 17595 17627 SARS-CoV-2_1200_18_LEFT 2 + -MN908947.3 18712 18737 SARS-CoV-2_1200_18_RIGHT 2 - -MN908947.3 18636 18658 SARS-CoV-2_1200_19_LEFT 1 + -MN908947.3 19762 19790 SARS-CoV-2_1200_19_RIGHT 1 - -MN908947.3 19679 19712 SARS-CoV-2_1200_20_LEFT 2 + -MN908947.3 20787 20819 SARS-CoV-2_1200_20_RIGHT 2 - -MN908947.3 20682 20711 SARS-CoV-2_1200_21_LEFT 1 + -MN908947.3 21801 21828 SARS-CoV-2_1200_21_RIGHT 1 - -MN908947.3 21695 21723 SARS-CoV-2_1200_22_LEFT 2 + -MN908947.3 22825 22858 SARS-CoV-2_1200_22_RIGHT 2 - -MN908947.3 22742 22774 SARS-CoV-2_1200_23_LEFT 1 + -MN908947.3 23868 23895 SARS-CoV-2_1200_23_RIGHT 1 - -MN908947.3 23784 23811 SARS-CoV-2_1200_24_LEFT 2 + -MN908947.3 24875 24905 SARS-CoV-2_1200_24_RIGHT 2 - -MN908947.3 24797 24822 SARS-CoV-2_1200_25_LEFT 1 + -MN908947.3 25911 25937 SARS-CoV-2_1200_25_RIGHT 1 - -MN908947.3 25784 25809 SARS-CoV-2_1200_26_LEFT 2 + -MN908947.3 26899 26924 SARS-CoV-2_1200_26_RIGHT 2 - -MN908947.3 26818 26840 SARS-CoV-2_1200_27_LEFT 1 + -MN908947.3 27934 27962 SARS-CoV-2_1200_27_RIGHT 1 - -MN908947.3 27832 27860 SARS-CoV-2_1200_28_LEFT 2 + -MN908947.3 28945 28969 SARS-CoV-2_1200_28_RIGHT 2 - -MN908947.3 28702 28723 SARS-CoV-2_1200_29_LEFT 1 + -MN908947.3 29779 29802 SARS-CoV-2_1200_29_RIGHT 1 - diff --git a/sars-cov-2/artic/v5.2.0_400/info.yml b/sars-cov-2/artic/v5.2.0_400/info.yml deleted file mode 100644 index 04bed5c..0000000 --- a/sars-cov-2/artic/v5.2.0_400/info.yml +++ /dev/null @@ -1,13 +0,0 @@ -schema_version: 0.9.0 -name: artic-v5.2.0_400 -organism: sars-cov-2 -developers: -- organisation_name: ARTIC network - home_page: https://artic.network/ -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.2.0_400 -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -derived_from: artic-v5.1.0_400 -primer_checksum: primaschema:f2e406ea13f767aa -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/artic/v5.2.0_400/primer.bed b/sars-cov-2/artic/v5.2.0_400/primer.bed deleted file mode 100644 index bf352ae..0000000 --- a/sars-cov-2/artic/v5.2.0_400/primer.bed +++ /dev/null @@ -1,214 +0,0 @@ -MN908947.3 23 48 SARS-CoV-2_400_1_LEFT 1 + GTAACAAACCAACCAACTTTCGATC -MN908947.3 47 78 SARS-CoV-2_400_1_LEFT_alt 1 + CTCTTGTAGATCTGTTCTCTAAACGAACTTT -MN908947.3 398 423 SARS-CoV-2_400_1_RIGHT 1 - AAGCCACAAGTGCCATCTTTAAGAT -MN908947.3 419 447 SARS-CoV-2_400_1_RIGHT_alt 1 - AAAACGCCTTTTTCAACTTCTACTAAGC -MN908947.3 344 366 SARS-CoV-2_400_2_LEFT 2 + TCGTACGTGGCTTTGGAGACTC -MN908947.3 707 732 SARS-CoV-2_400_2_RIGHT 2 - TCTTCATAAGGATCAGTGCCAAGCT -MN908947.3 638 661 SARS-CoV-2_400_3_LEFT_alt 1 + AGAACGGTAATAAAGGAGCTGGT -MN908947.3 664 687 SARS-CoV-2_400_3_LEFT 1 + CATAGTTACGGCGCCGATCTAAA -MN908947.3 1018 1047 SARS-CoV-2_400_3_RIGHT 1 - TTTGCCAATTTAATTTCAAAAGGTGTCTG -MN908947.3 970 995 SARS-CoV-2_400_4_LEFT 2 + CATGAAATTGCTTGGTACACGGAAC -MN908947.3 1340 1370 SARS-CoV-2_400_4_RIGHT 2 - AAATTTTAACAACAGCATTTTGGGGTAAGT -MN908947.3 1292 1320 SARS-CoV-2_400_5_LEFT 1 + TTTGTGGCACTGAGAATTTGACTAAAGA -MN908947.3 1660 1692 SARS-CoV-2_400_5_RIGHT 1 - ATAATGGCGATCTCTTCATTAAGTTTAAAGTC -MN908947.3 1574 1596 SARS-CoV-2_400_6_LEFT_alt 2 + GTGTTGTTGGAGAAGGTTCCGA -MN908947.3 1609 1640 SARS-CoV-2_400_6_LEFT 2 + AACCTTCTTGAAATACTCCAAAAAGAGAAAG -MN908947.3 1945 1972 SARS-CoV-2_400_6_RIGHT_alt 2 - TATTGTTATAGCGGCCTTCTGTAAAAC -MN908947.3 1965 1998 SARS-CoV-2_400_6_RIGHT 2 - AGTGAATACTGTGAAATTCCATCTAGTATTGTT -MN908947.3 1921 1945 SARS-CoV-2_400_7_LEFT 1 + GAAACTGCTCAAAATTCTGTGCGT -MN908947.3 1951 1979 SARS-CoV-2_400_7_LEFT_alt 1 + CAGAAGGCCGCTATAACAATACTAGATG -MN908947.3 2283 2316 SARS-CoV-2_400_7_RIGHT 1 - TTATTTACAAGCTTAAAGAATGTCTGAACACTC -MN908947.3 2324 2352 SARS-CoV-2_400_7_RIGHT_alt 1 - CCAATAATGATAGAGTCAGCACACAAAG -MN908947.3 2229 2252 SARS-CoV-2_400_8_LEFT 2 + TGCTTGTGAAATTGTCGGTGGAC -MN908947.3 2603 2629 SARS-CoV-2_400_8_RIGHT 2 - AAGCCCGTTAATACAAACTGGTGTAC -MN908947.3 2533 2563 SARS-CoV-2_400_9_LEFT 1 + GTCTTGAAAACTGGTGATTTACAACCATTA -MN908947.3 2900 2933 SARS-CoV-2_400_9_RIGHT 1 - GTAATTCAGATACTGGTTGCAAAGTTTTTATGA -MN908947.3 2854 2880 SARS-CoV-2_400_10_LEFT 2 + CTCGGTACAGAAGTAAATGAGTTCGC -MN908947.3 3233 3254 SARS-CoV-2_400_10_RIGHT 2 - TGTCCTCACTGCCGTCTTGTT -MN908947.3 3184 3213 SARS-CoV-2_400_11_LEFT 1 + GAGCAAGAAGAAGATTGGTTAGATGATGA -MN908947.3 3560 3584 SARS-CoV-2_400_11_RIGHT 1 - CGCTTAAAACACAACTACCACCCA -MN908947.3 3510 3540 SARS-CoV-2_400_12_LEFT 2 + CATGCAAGTTGAATCTGATGATTACATAGC -MN908947.3 3883 3913 SARS-CoV-2_400_12_RIGHT 2 - AGTTATAAATGGCTTAACTTCCTCTTTAGG -MN908947.3 3791 3824 SARS-CoV-2_400_13_LEFT 1 + CTGTCTTTGATAAAAATCTCTATGACAAACTTG -MN908947.3 4147 4180 SARS-CoV-2_400_13_RIGHT 1 - CTTTTTAGTAGGTATAACCACAGCAGTTAAAAC -MN908947.3 4079 4108 SARS-CoV-2_400_14_LEFT 2 + GTGACATTGACATCACTTTCTTAAAGAAA -MN908947.3 4457 4488 SARS-CoV-2_400_14_RIGHT 2 - CCCTTATATTTACGCTGTATAGTTGAAACTA -MN908947.3 4403 4425 SARS-CoV-2_400_15_LEFT 1 + CACATGCAGAAGAAACACGCAA -MN908947.3 4776 4803 SARS-CoV-2_400_15_RIGHT 1 - TCTTTATAGGAACCAGCAAGTGAGATG -MN908947.3 4723 4756 SARS-CoV-2_400_16_LEFT 2 + AATGGTTATCTTACTTCTTCTTCTAAAACACCT -MN908947.3 5089 5119 SARS-CoV-2_400_16_RIGHT 2 - AAATGTTTTACCTTCATGTGAATTATGAGG -MN908947.3 5036 5063 SARS-CoV-2_400_17_LEFT 1 + GACAACAGTTTGGTCCAACTTATTTGG -MN908947.3 5398 5429 SARS-CoV-2_400_17_RIGHT 1 - CTGTCTTATTACAGTAGGCTAAGATAAGTGC -MN908947.3 5344 5370 SARS-CoV-2_400_18_LEFT 2 + GCTCTACAAGATGCTTATTACAGAGC -MN908947.3 5716 5744 SARS-CoV-2_400_18_RIGHT 2 - ACTCACTAGCACAAGTAAATGTACCATG -MN908947.3 5671 5696 SARS-CoV-2_400_19_LEFT 1 + CCTTTTGTTATGATGTCAGCACCAC -MN908947.3 6031 6062 SARS-CoV-2_400_19_RIGHT 1 - CACATACAAACTTAAAATTATCGAAGCTTGC -MN908947.3 5891 5923 SARS-CoV-2_400_20_LEFT 2 + CCATAAAACCAGTTACTTATAAATTGGATGGT -MN908947.3 6257 6288 SARS-CoV-2_400_20_RIGHT 2 - CAGGTATTTGGTTTATACGTGGCTTTATTAG -MN908947.3 6204 6237 SARS-CoV-2_400_21_LEFT 1 + GAAAGGAGCTAAATTGTTACATAAACCTATTGT -MN908947.3 6562 6595 SARS-CoV-2_400_21_RIGHT 1 - AGGTTTCTTAATAGTAAGACTAGAATTGTCTAC -MN908947.3 6515 6542 SARS-CoV-2_400_22_LEFT 2 + TAAAAATTACAGAAGAGGTTGGCCACA -MN908947.3 6882 6915 SARS-CoV-2_400_22_RIGHT 2 - TAATTAAATGAAGCCTCTAGACAAAATTTACCG -MN908947.3 6823 6854 SARS-CoV-2_400_23_LEFT 1 + AATTCTAGAATTAAAGCATCTATGCCGACTA -MN908947.3 7199 7229 SARS-CoV-2_400_23_RIGHT 1 - CAAAAGCAGTTAAATCCCATTTAAAAGATG -MN908947.3 7145 7179 SARS-CoV-2_400_24_LEFT 2 + GTTTAGATTCTTTAGACACCTATCCTTCTTTAGA -MN908947.3 7518 7545 SARS-CoV-2_400_24_RIGHT 2 - ACAATAGTTGTACATTCGACTCTTGTT -MN908947.3 7456 7482 SARS-CoV-2_400_25_LEFT 1 + GTGCATGTTGTAGACGGTTGTAATTC -MN908947.3 7819 7850 SARS-CoV-2_400_25_RIGHT 1 - CTCTCAGGTTGTCTAAGTTAACAAAATGAGA -MN908947.3 7768 7797 SARS-CoV-2_400_26_LEFT 2 + CATCTTTACTTTGATAAAGCTGGTCAAAA -MN908947.3 8136 8169 SARS-CoV-2_400_26_RIGHT 2 - GAAATAAAAGTAGATAAGACATTGTCTAAGGAC -MN908947.3 8085 8112 SARS-CoV-2_400_27_LEFT 1 + AAAACTCAAAACACTAGTTGCAACTGC -MN908947.3 8468 8498 SARS-CoV-2_400_27_RIGHT 1 - CACATGTCAACTTAAAAGGTAAGTTATTCT -MN908947.3 8406 8436 SARS-CoV-2_400_28_LEFT 2 + CGTTAAAGATTTCATGTCATTGTCTGAACA -MN908947.3 8781 8806 SARS-CoV-2_400_28_RIGHT 2 - ATTAGTATAACTACCACCACGCTGG -MN908947.3 8732 8761 SARS-CoV-2_400_29_LEFT 1 + CAGATACTTGTTTTGCTAACAAACATGCT -MN908947.3 9107 9129 SARS-CoV-2_400_29_RIGHT 1 - ACATAACGTGTGTCAGGGCGTA -MN908947.3 9023 9052 SARS-CoV-2_400_30_LEFT 2 + CAATTTTTAAAGATGCTTCTGGTAAGCCA -MN908947.3 9397 9423 SARS-CoV-2_400_30_RIGHT 2 - ACAATACCACCAGCTACTATAGATGC -MN908947.3 9299 9324 SARS-CoV-2_400_31_LEFT_alt 1 + GATCTTTACCAGGAGTTTTCTGTGG -MN908947.3 9322 9355 SARS-CoV-2_400_31_LEFT 1 + GGTGTAGATGCTGTAAATTTACTTACTAATATG -MN908947.3 9673 9706 SARS-CoV-2_400_31_RIGHT 1 - ACAAATGATATAAGCAATTGTTATCCAGAAAGG -MN908947.3 9571 9604 SARS-CoV-2_400_32_LEFT 2 + GGTGTTTATTCTGTTATTTACTTGTACTTGACA -MN908947.3 9949 9971 SARS-CoV-2_400_32_RIGHT 2 - TTGCGAGATGACAACAAGCAGC -MN908947.3 9896 9929 SARS-CoV-2_400_33_LEFT 1 + ATAATAAGTACAAGTATTTTAGTGGAGCAATGG -MN908947.3 10266 10295 SARS-CoV-2_400_33_RIGHT 1 - AATGTCCAATAACCCTGAGTTGAACATTA -MN908947.3 10215 10245 SARS-CoV-2_400_34_LEFT 2 + TGAAGATTTACTCATTCGTAAGTCTAATCA -MN908947.3 10587 10615 SARS-CoV-2_400_34_RIGHT 2 - GTCAACAAAAGGTCCATAAAAGTTACCT -MN908947.3 10527 10557 SARS-CoV-2_400_35_LEFT 1 + TTTTTGTTACATGCACCATATGGAATTACC -MN908947.3 10897 10927 SARS-CoV-2_400_35_RIGHT 1 - AAATTCATCTTCTAATAAAGCACTACCCAA -MN908947.3 10832 10865 SARS-CoV-2_400_36_LEFT 2 + CCGTTTTAGATATGTGTGCTTCATTAAAAGAAT -MN908947.3 11201 11232 SARS-CoV-2_400_36_RIGHT 2 - GGCATATAGACCATATTAAAATAAGCTACAG -MN908947.3 11152 11181 SARS-CoV-2_400_37_LEFT 1 + AAACATAAGCATGCATTTCTCTGTTTGTT -MN908947.3 11514 11536 SARS-CoV-2_400_37_RIGHT 1 - ACCTCTGGCCAAAAACATGACA -MN908947.3 11463 11494 SARS-CoV-2_400_38_LEFT 2 + GTGGGCTCTTATAATCTCTGTTACTTCTAAC -MN908947.3 11832 11863 SARS-CoV-2_400_38_RIGHT 2 - CTTTACATCTGACATTTTAGACTGTACAGTG -MN908947.3 11785 11811 SARS-CoV-2_400_39_LEFT 1 + AACATTAAATTGTTGGGTGTTGGTGG -MN908947.3 12161 12185 SARS-CoV-2_400_39_RIGHT 1 - CAGAATCACCATTAGCAACAGCCT -MN908947.3 12112 12137 SARS-CoV-2_400_40_LEFT 2 + TCCCTTCCATCATATGCAGCTTTTG -MN908947.3 12477 12510 SARS-CoV-2_400_40_RIGHT 2 - TTTTTATATGTGTTATAGTCTGGTATGACAACC -MN908947.3 12419 12444 SARS-CoV-2_400_41_LEFT 1 + CAAGAGATGGTTGTGTTCCCTTGAA -MN908947.3 12794 12819 SARS-CoV-2_400_41_RIGHT 1 - AACAGTGCAAGTACAAACCTACCTC -MN908947.3 12752 12774 SARS-CoV-2_400_42_LEFT 2 + GCACTGATGACAATGCGTTAGC -MN908947.3 13121 13146 SARS-CoV-2_400_42_RIGHT 2 - CAATTAGTGATTGGTTGTCCCCCAC -MN908947.3 13075 13099 SARS-CoV-2_400_43_LEFT 1 + GCTTTTGCTGTAGATGCTGCTAAA -MN908947.3 13458 13480 SARS-CoV-2_400_43_RIGHT 1 - CACCGCAAACCCGTTTAAAAAC -MN908947.3 13415 13435 SARS-CoV-2_400_44_LEFT 2 + ATCAACTCCGCGAACCCATG -MN908947.3 13787 13815 SARS-CoV-2_400_44_RIGHT 2 - TGCCATTGTGTATTTAGTAAGACGTTGA -MN908947.3 13738 13767 SARS-CoV-2_400_45_LEFT 1 + ACTTCTTTAAGTTTAGAATAGACGGTGAC -MN908947.3 14120 14144 SARS-CoV-2_400_45_RIGHT 1 - TCTACAACAGGAACTCCACTACCT -MN908947.3 14073 14100 SARS-CoV-2_400_46_LEFT 2 + CTCAATGGTAACTGGTATGATTTCGGT -MN908947.3 14427 14457 SARS-CoV-2_400_46_RIGHT 2 - TGGAACACCATCAACAAATATTTTTCTCAC -MN908947.3 14375 14407 SARS-CoV-2_400_47_LEFT 1 + CTTTAATGTTTTATTCTCTACAGTGTTCCCAC -MN908947.3 14745 14775 SARS-CoV-2_400_47_RIGHT 1 - ATCCTGAGCAAAGAAGAAGTGTTTTAATTC -MN908947.3 14700 14725 SARS-CoV-2_400_48_LEFT 2 + GACTTTGCTGTGTCTAAGGGTTTCT -MN908947.3 15065 15095 SARS-CoV-2_400_48_RIGHT 2 - TTCTTTGCACTAATGGCATACTTAAGATTC -MN908947.3 15016 15045 SARS-CoV-2_400_49_LEFT 1 + CACTTTTCGCATATACAAAACGTAATGTC -MN908947.3 15386 15416 SARS-CoV-2_400_49_RIGHT 1 - CACTCATTAGCTAATCTATAGAAACGGTGT -MN908947.3 15342 15366 SARS-CoV-2_400_50_LEFT 2 + TCACTTGTTCTTGCTCGCAAACAT -MN908947.3 15716 15742 SARS-CoV-2_400_50_RIGHT 2 - TATTGAAACACACAACAGCATCGTCA -MN908947.3 15659 15688 SARS-CoV-2_400_51_LEFT 1 + CTTTGTGAATGAGTTTTACGCATATTTGC -MN908947.3 16028 16059 SARS-CoV-2_400_51_RIGHT 1 - AGGATGTTTAGTAAGTGGGTAAGCATCTATA -MN908947.3 15964 15998 SARS-CoV-2_400_52_LEFT 2 + GTTTTGTAGATGATATCGTAAAAACAGATGGTAC -MN908947.3 16331 16364 SARS-CoV-2_400_52_RIGHT 2 - AAGACTAATTTATGTGATGTTGATATGACATGG -MN908947.3 16285 16311 SARS-CoV-2_400_53_LEFT 1 + GTGCTTGCATACGTAGACCATTCTTA -MN908947.3 16650 16679 SARS-CoV-2_400_53_RIGHT 1 - GACAGTTTAAATGTCTCCTCAGTAGCTTT -MN908947.3 16603 16630 SARS-CoV-2_400_54_LEFT 2 + CTAACACCTGTACTGAAAGACTCAAGC -MN908947.3 16624 16647 SARS-CoV-2_400_54_LEFT_alt 2 + TCAAGCTTTTTGCAGCAGAAACG -MN908947.3 16985 17011 SARS-CoV-2_400_54_RIGHT 2 - AGATATTGAGTGTTGGGTATAAGCCA -MN908947.3 17004 17033 SARS-CoV-2_400_54_RIGHT_alt 2 - ACATTGCTAGAAAACTCATCTGAGATATT -MN908947.3 16929 16954 SARS-CoV-2_400_55_LEFT 1 + GTAATGCCATTAAGTGCACCTACAC -MN908947.3 16962 16994 SARS-CoV-2_400_55_LEFT_alt 1 + CAAGAGCACTATGTTAGAATTACTGGCTTATA -MN908947.3 17301 17329 SARS-CoV-2_400_55_RIGHT 1 - CAGGCAATGCATTTACAGTACAAAAGAC -MN908947.3 17333 17362 SARS-CoV-2_400_55_RIGHT_alt 1 - TTTCATCAAAGACAACTATATCTGCTGTC -MN908947.3 17182 17212 SARS-CoV-2_400_56_LEFT 2 + CACTATGTGAGAAGGCATTAAAATATTTGC -MN908947.3 17560 17582 SARS-CoV-2_400_56_RIGHT 2 - ACAATTTCAGCAGGACAACGCC -MN908947.3 17478 17507 SARS-CoV-2_400_57_LEFT 1 + GGCACACTAGAACCAGAATATTTCAATTC -MN908947.3 17859 17886 SARS-CoV-2_400_57_RIGHT 1 - AGTGGTTTGAGTGAATATGACATAGTC -MN908947.3 17813 17839 SARS-CoV-2_400_58_LEFT 2 + GGGACTACCAACTCAAACTGTTGATT -MN908947.3 18181 18212 SARS-CoV-2_400_58_RIGHT 2 - ATCATAGAGATGAGTCTTCTATAGGTCATGT -MN908947.3 18121 18153 SARS-CoV-2_400_59_LEFT 1 + GTGTTGACACTAAATTCAAAACTGAAGGTTTA -MN908947.3 18504 18527 SARS-CoV-2_400_59_RIGHT 1 - CGCACTACATTCCAAGGAAGTCC -MN908947.3 18460 18484 SARS-CoV-2_400_60_LEFT 2 + CGCCTGGAGATCAATTTAAACACC -MN908947.3 18835 18860 SARS-CoV-2_400_60_RIGHT 2 - GCATCACAACTAGCTACATGTGCAT -MN908947.3 18789 18815 SARS-CoV-2_400_61_LEFT 1 + GGTAACCTACAAAGCAACCATGATCT -MN908947.3 19170 19195 SARS-CoV-2_400_61_RIGHT 1 - TCCAAAATAGGCATACACCATCTGT -MN908947.3 19101 19134 SARS-CoV-2_400_62_LEFT 2 + CCTTGTAGTGACAAAGCTTATAAAATAGAAGAA -MN908947.3 19469 19495 SARS-CoV-2_400_62_RIGHT 2 - GTCTACAGACAGCACCACCTAAATTG -MN908947.3 19415 19449 SARS-CoV-2_400_63_LEFT 1 + AGTGTCAGATATAGATTATGTACCACTAAAGTCT -MN908947.3 19770 19796 SARS-CoV-2_400_63_RIGHT 1 - GCCCAAAGCTCAAATGCTACATTAAC -MN908947.3 19721 19750 SARS-CoV-2_400_64_LEFT 2 + AGTTGATGGTGTTGATGTAGAATTGTTTG -MN908947.3 20091 20121 SARS-CoV-2_400_64_RIGHT 2 - TAATGTGACTCCATTAAGACTAGCTTGTTT -MN908947.3 20028 20054 SARS-CoV-2_400_65_LEFT 1 + GCCCGTAATGGTGTTCTTATTACAGA -MN908947.3 20408 20441 SARS-CoV-2_400_65_RIGHT 1 - GTACTGTCCATAGGAATAAAATCTTCTAATTCA -MN908947.3 20358 20388 SARS-CoV-2_400_66_LEFT 2 + GGTTTACATCTACTGATTGGACTAGCTAAA -MN908947.3 20729 20758 SARS-CoV-2_400_66_RIGHT 2 - CACTATCACCATAATTTTGAAGGTCACAC -MN908947.3 20650 20676 SARS-CoV-2_400_67_LEFT_alt 1 + AATTACAATCTAGTCAAGCGTGGCAA -MN908947.3 20680 20708 SARS-CoV-2_400_67_LEFT 1 + GTGTTGCTATGCCTAATCTTTACAAAAT -MN908947.3 21018 21051 SARS-CoV-2_400_67_RIGHT_alt 1 - CATATCACTAATAATGAGATCCCATTTATTAGC -MN908947.3 21047 21080 SARS-CoV-2_400_67_RIGHT 1 - TTTGTAACATTTTTAGTCTTAGGGTCGTACATA -MN908947.3 20991 21018 SARS-CoV-2_400_68_LEFT 2 + ATTGGTGATTGTGCAACTGTACATACA -MN908947.3 21372 21402 SARS-CoV-2_400_68_RIGHT 2 - ACTCATGTCAAATAAAGAATAGGAAGACAA -MN908947.3 21322 21352 SARS-CoV-2_400_69_LEFT 1 + ATGTCATGCATGCAAATTACATATTTTGGA -MN908947.3 21696 21722 SARS-CoV-2_400_69_RIGHT 1 - AGTCCTGAGTTGAATGTAAAACTGAG -MN908947.3 21579 21607 SARS-CoV-2_400_70_LEFT 2 + TTTATTGCCACTAGTCTCTAGTCAGTGT -MN908947.3 21927 21960 SARS-CoV-2_400_70_RIGHT 2 - AATTCACAGACTTTAATAACAACATTAGTAGCG -MN908947.3 21866 21894 SARS-CoV-2_400_71_LEFT 1 + GAGGCTGGATTTTTGGTACTACTTTAGA -MN908947.3 22238 22266 SARS-CoV-2_400_71_RIGHT 1 - ATGTTAATACCTATTGGCAAATCTACCA -MN908947.3 22156 22189 SARS-CoV-2_400_72_LEFT 2 + GGTTATTTTAAAATATATTCTAAGCACACGCCT -MN908947.3 22517 22547 SARS-CoV-2_400_72_RIGHT 2 - ATCTAACAATAGATTCTGTTGGTTGGACTC -MN908947.3 22466 22494 SARS-CoV-2_400_73_LEFT 1 + CGTTGAAATCCTTCACTGTAGAAAAAGG -MN908947.3 22839 22866 SARS-CoV-2_400_73_RIGHT 1 - GCTATAACGCAGCCTGTAAAATCATCT -MN908947.3 22742 22774 SARS-CoV-2_400_74_LEFT 2 + ATGTCTATGCAGATTCATTTGTAATTAGAGGT -MN908947.3 23119 23140 SARS-CoV-2_400_74_RIGHT 2 - TCCACAAACAGTTGCTGGTGC -MN908947.3 22922 22954 SARS-CoV-2_400_75_LEFT 1 + GATTGTTTAGGAAGTCTAATCTCAAACCTTTT -MN908947.3 23078 23109 SARS-CoV-2_400_75_LEFT_alt 1 + AACCATACAGAGTAGTAGTACTTTCTTTTGA -MN908947.3 23296 23324 SARS-CoV-2_400_75_RIGHT 1 - TAATGTCAAGAATCTCAAGTGTCTGTGG -MN908947.3 23452 23478 SARS-CoV-2_400_75_RIGHT_alt 1 - CCTGTAGAATAAACACGCCAAGTAGG -MN908947.3 23229 23258 SARS-CoV-2_400_76_LEFT 2 + CAAAAAGTTTCTGCCTTTCCAACAATTTG -MN908947.3 23609 23631 SARS-CoV-2_400_76_RIGHT 2 - TGACTAGCTACACTACGTGCCC -MN908947.3 23563 23589 SARS-CoV-2_400_77_LEFT 1 + GCAGGTATATGCGCTAGTTATCAGAC -MN908947.3 23914 23944 SARS-CoV-2_400_77_RIGHT 1 - AATTGGTGGTGTTTTGTAAATTTGTTTGAC -MN908947.3 23823 23853 SARS-CoV-2_400_78_LEFT 2 + GCAATATGGCAGTTTTTGTACACAATTAAA -MN908947.3 24209 24231 SARS-CoV-2_400_78_RIGHT 2 - GCACCAAAGGTCCAACCAGAAG -MN908947.3 24160 24189 SARS-CoV-2_400_79_LEFT 1 + GATGAAATGATTGCTCAATACACTTCTGC -MN908947.3 24535 24560 SARS-CoV-2_400_79_RIGHT 1 - TGCCTGTGATCAACCTATCAATTTG -MN908947.3 24442 24468 SARS-CoV-2_400_80_LEFT 2 + ACGCTTGTTAAACAACTTAGCTCCAA -MN908947.3 24815 24839 SARS-CoV-2_400_80_RIGHT 2 - CTTCACGAGGAAAGTGTGCTTTTC -MN908947.3 24751 24774 SARS-CoV-2_400_81_LEFT 1 + CATGTGACTTATGTCCCTGCACA -MN908947.3 25120 25151 SARS-CoV-2_400_81_RIGHT 1 - GAGATTCATTTAAATTCTTGGCAACCTCATT -MN908947.3 25053 25082 SARS-CoV-2_400_82_LEFT 2 + TGATTTAGGTGACATCTCTGGCATTAATG -MN908947.3 25423 25452 SARS-CoV-2_400_82_RIGHT 2 - GATTTCACCTTGCTTCAAAGTTACAGTTC -MN908947.3 25372 25402 SARS-CoV-2_400_83_LEFT 1 + CATTACACATAAACGAACTTATGGATTTGT -MN908947.3 25744 25777 SARS-CoV-2_400_83_RIGHT 1 - GCCAAAGCCTCATTATTATTCTTACAAAGTTTA -MN908947.3 25696 25724 SARS-CoV-2_400_84_LEFT 2 + AAGCCCCTTTTCTCTATCTTTATGCTTT -MN908947.3 25718 25743 SARS-CoV-2_400_84_LEFT_alt 2 + TGCTTTAGTCTACTTCTTGCAGAGT -MN908947.3 26059 26086 SARS-CoV-2_400_84_RIGHT 2 - TGAAGAAGGTAACATGTTCAACACCAG -MN908947.3 26107 26131 SARS-CoV-2_400_84_RIGHT_alt 2 - GAATTTGGACATGTTCTTCAGGCT -MN908947.3 26011 26039 SARS-CoV-2_400_85_LEFT 1 + TCACTTCAGACTATTACCAGCTGTACTC -MN908947.3 26382 26411 SARS-CoV-2_400_85_RIGHT 1 - AAAGAAGGTTTTACAAGACTCACGTTAAC -MN908947.3 26339 26362 SARS-CoV-2_400_86_LEFT 2 + CATCCTTACTGCGCTTCGATTGT -MN908947.3 26730 26756 SARS-CoV-2_400_86_RIGHT 2 - ACCGGTGATCCAATTTATTCTGTAAA -MN908947.3 26593 26621 SARS-CoV-2_400_87_LEFT_alt 1 + AGGTTTCCTATTCCTTACATGGATTTGT -MN908947.3 26639 26672 SARS-CoV-2_400_87_LEFT 1 + GCCAACAGGAATAGGTTTTTGTATATAATTAAG -MN908947.3 26989 27009 SARS-CoV-2_400_87_RIGHT_alt 1 - CCTTGATGTCACAGCGTCCT -MN908947.3 27011 27038 SARS-CoV-2_400_87_RIGHT 1 - TGTAGCAACAGTGATTTCTTTAGGCAG -MN908947.3 26965 26989 SARS-CoV-2_400_88_LEFT 2 + TCTTCGTATTGCTGGACACCATCT -MN908947.3 27342 27372 SARS-CoV-2_400_88_RIGHT 2 - TGGTTGCTCTTCATCTAATTGAGAATATTT -MN908947.3 27218 27251 SARS-CoV-2_400_89_LEFT 1 + CTTTCAGGTTACTATAGCAGAGATATTACTAAT -MN908947.3 27583 27603 SARS-CoV-2_400_89_RIGHT 1 - GCCGTCAGGACAAGCAAAAG -MN908947.3 27530 27558 SARS-CoV-2_400_90_LEFT 2 + TCATCCTCTAGCTGATAACAAATTTGCA -MN908947.3 27927 27950 SARS-CoV-2_400_90_RIGHT 2 - TTCTTGGTGAAATGCAGCTACAG -MN908947.3 27832 27860 SARS-CoV-2_400_91_LEFT 1 + TATCTTTTGGTTCTCACTTGAACTGCAA -MN908947.3 28209 28237 SARS-CoV-2_400_91_RIGHT 1 - CGAACGTCATGATACTCTAAAAAGTCTT -MN908947.3 28135 28166 SARS-CoV-2_400_92_LEFT 2 + TTCCTGTTTACCTTTTACAATTAATTGCCAG -MN908947.3 28513 28539 SARS-CoV-2_400_92_RIGHT 2 - CTTCGGTAGTAGCCAATTTGGTCATC -MN908947.3 28473 28493 SARS-CoV-2_400_93_LEFT 1 + TCGAGGACAAGGCGTTCCAA -MN908947.3 28849 28873 SARS-CoV-2_400_93_RIGHT 1 - GCCTGGAGTTGAATTTCTTGAACT -MN908947.3 28808 28829 SARS-CoV-2_400_94_LEFT 2 + GCAGTCAAGCCTCTTCTCGTT -MN908947.3 29203 29224 SARS-CoV-2_400_94_RIGHT 2 - CATTCCGAAGAACGCTGAAGC -MN908947.3 29159 29183 SARS-CoV-2_400_95_LEFT 1 + CTGATTACAAACATTGGCCGCAAA -MN908947.3 29538 29559 SARS-CoV-2_400_95_RIGHT 1 - ATCTGCCTTGTGTGGTCTGCA -MN908947.3 29462 29486 SARS-CoV-2_400_96_LEFT_alt 2 + CTGCAGATTTGGATGATTTCTCCA -MN908947.3 29493 29515 SARS-CoV-2_400_96_LEFT 2 + GCAACAATCCATGAGCAGTGCT -MN908947.3 29840 29873 SARS-CoV-2_400_96_RIGHT 2 - TTTGTCATTCTCCTAAGAAGCTATTAAAATCAC - diff --git a/sars-cov-2/artic/v5.2.0_400/scheme.bed b/sars-cov-2/artic/v5.2.0_400/scheme.bed deleted file mode 100644 index 95a2e3b..0000000 --- a/sars-cov-2/artic/v5.2.0_400/scheme.bed +++ /dev/null @@ -1,213 +0,0 @@ -MN908947.3 23 48 SARS-CoV-2_400_1_LEFT 1 + -MN908947.3 47 78 SARS-CoV-2_400_1_LEFT_alt 1 + -MN908947.3 398 423 SARS-CoV-2_400_1_RIGHT 1 - -MN908947.3 419 447 SARS-CoV-2_400_1_RIGHT_alt 1 - -MN908947.3 344 366 SARS-CoV-2_400_2_LEFT 2 + -MN908947.3 707 732 SARS-CoV-2_400_2_RIGHT 2 - -MN908947.3 638 661 SARS-CoV-2_400_3_LEFT_alt 1 + -MN908947.3 664 687 SARS-CoV-2_400_3_LEFT 1 + -MN908947.3 1018 1047 SARS-CoV-2_400_3_RIGHT 1 - -MN908947.3 970 995 SARS-CoV-2_400_4_LEFT 2 + -MN908947.3 1340 1370 SARS-CoV-2_400_4_RIGHT 2 - -MN908947.3 1292 1320 SARS-CoV-2_400_5_LEFT 1 + -MN908947.3 1660 1692 SARS-CoV-2_400_5_RIGHT 1 - -MN908947.3 1574 1596 SARS-CoV-2_400_6_LEFT_alt 2 + -MN908947.3 1609 1640 SARS-CoV-2_400_6_LEFT 2 + -MN908947.3 1945 1972 SARS-CoV-2_400_6_RIGHT_alt 2 - -MN908947.3 1965 1998 SARS-CoV-2_400_6_RIGHT 2 - -MN908947.3 1921 1945 SARS-CoV-2_400_7_LEFT 1 + -MN908947.3 1951 1979 SARS-CoV-2_400_7_LEFT_alt 1 + -MN908947.3 2283 2316 SARS-CoV-2_400_7_RIGHT 1 - -MN908947.3 2324 2352 SARS-CoV-2_400_7_RIGHT_alt 1 - -MN908947.3 2229 2252 SARS-CoV-2_400_8_LEFT 2 + -MN908947.3 2603 2629 SARS-CoV-2_400_8_RIGHT 2 - -MN908947.3 2533 2563 SARS-CoV-2_400_9_LEFT 1 + -MN908947.3 2900 2933 SARS-CoV-2_400_9_RIGHT 1 - -MN908947.3 2854 2880 SARS-CoV-2_400_10_LEFT 2 + -MN908947.3 3233 3254 SARS-CoV-2_400_10_RIGHT 2 - -MN908947.3 3184 3213 SARS-CoV-2_400_11_LEFT 1 + -MN908947.3 3560 3584 SARS-CoV-2_400_11_RIGHT 1 - -MN908947.3 3510 3540 SARS-CoV-2_400_12_LEFT 2 + -MN908947.3 3883 3913 SARS-CoV-2_400_12_RIGHT 2 - -MN908947.3 3791 3824 SARS-CoV-2_400_13_LEFT 1 + -MN908947.3 4147 4180 SARS-CoV-2_400_13_RIGHT 1 - -MN908947.3 4079 4108 SARS-CoV-2_400_14_LEFT 2 + -MN908947.3 4457 4488 SARS-CoV-2_400_14_RIGHT 2 - -MN908947.3 4403 4425 SARS-CoV-2_400_15_LEFT 1 + -MN908947.3 4776 4803 SARS-CoV-2_400_15_RIGHT 1 - -MN908947.3 4723 4756 SARS-CoV-2_400_16_LEFT 2 + -MN908947.3 5089 5119 SARS-CoV-2_400_16_RIGHT 2 - -MN908947.3 5036 5063 SARS-CoV-2_400_17_LEFT 1 + -MN908947.3 5398 5429 SARS-CoV-2_400_17_RIGHT 1 - -MN908947.3 5344 5370 SARS-CoV-2_400_18_LEFT 2 + -MN908947.3 5716 5744 SARS-CoV-2_400_18_RIGHT 2 - -MN908947.3 5671 5696 SARS-CoV-2_400_19_LEFT 1 + -MN908947.3 6031 6062 SARS-CoV-2_400_19_RIGHT 1 - -MN908947.3 5891 5923 SARS-CoV-2_400_20_LEFT 2 + -MN908947.3 6257 6288 SARS-CoV-2_400_20_RIGHT 2 - -MN908947.3 6204 6237 SARS-CoV-2_400_21_LEFT 1 + -MN908947.3 6562 6595 SARS-CoV-2_400_21_RIGHT 1 - -MN908947.3 6515 6542 SARS-CoV-2_400_22_LEFT 2 + -MN908947.3 6882 6915 SARS-CoV-2_400_22_RIGHT 2 - -MN908947.3 6823 6854 SARS-CoV-2_400_23_LEFT 1 + -MN908947.3 7199 7229 SARS-CoV-2_400_23_RIGHT 1 - -MN908947.3 7145 7179 SARS-CoV-2_400_24_LEFT 2 + -MN908947.3 7518 7545 SARS-CoV-2_400_24_RIGHT 2 - -MN908947.3 7456 7482 SARS-CoV-2_400_25_LEFT 1 + -MN908947.3 7819 7850 SARS-CoV-2_400_25_RIGHT 1 - -MN908947.3 7768 7797 SARS-CoV-2_400_26_LEFT 2 + -MN908947.3 8136 8169 SARS-CoV-2_400_26_RIGHT 2 - -MN908947.3 8085 8112 SARS-CoV-2_400_27_LEFT 1 + -MN908947.3 8468 8498 SARS-CoV-2_400_27_RIGHT 1 - -MN908947.3 8406 8436 SARS-CoV-2_400_28_LEFT 2 + -MN908947.3 8781 8806 SARS-CoV-2_400_28_RIGHT 2 - -MN908947.3 8732 8761 SARS-CoV-2_400_29_LEFT 1 + -MN908947.3 9107 9129 SARS-CoV-2_400_29_RIGHT 1 - -MN908947.3 9023 9052 SARS-CoV-2_400_30_LEFT 2 + -MN908947.3 9397 9423 SARS-CoV-2_400_30_RIGHT 2 - -MN908947.3 9299 9324 SARS-CoV-2_400_31_LEFT_alt 1 + -MN908947.3 9322 9355 SARS-CoV-2_400_31_LEFT 1 + -MN908947.3 9673 9706 SARS-CoV-2_400_31_RIGHT 1 - -MN908947.3 9571 9604 SARS-CoV-2_400_32_LEFT 2 + -MN908947.3 9949 9971 SARS-CoV-2_400_32_RIGHT 2 - -MN908947.3 9896 9929 SARS-CoV-2_400_33_LEFT 1 + -MN908947.3 10266 10295 SARS-CoV-2_400_33_RIGHT 1 - -MN908947.3 10215 10245 SARS-CoV-2_400_34_LEFT 2 + -MN908947.3 10587 10615 SARS-CoV-2_400_34_RIGHT 2 - -MN908947.3 10527 10557 SARS-CoV-2_400_35_LEFT 1 + -MN908947.3 10897 10927 SARS-CoV-2_400_35_RIGHT 1 - -MN908947.3 10832 10865 SARS-CoV-2_400_36_LEFT 2 + -MN908947.3 11201 11232 SARS-CoV-2_400_36_RIGHT 2 - -MN908947.3 11152 11181 SARS-CoV-2_400_37_LEFT 1 + -MN908947.3 11514 11536 SARS-CoV-2_400_37_RIGHT 1 - -MN908947.3 11463 11494 SARS-CoV-2_400_38_LEFT 2 + -MN908947.3 11832 11863 SARS-CoV-2_400_38_RIGHT 2 - -MN908947.3 11785 11811 SARS-CoV-2_400_39_LEFT 1 + -MN908947.3 12161 12185 SARS-CoV-2_400_39_RIGHT 1 - -MN908947.3 12112 12137 SARS-CoV-2_400_40_LEFT 2 + -MN908947.3 12477 12510 SARS-CoV-2_400_40_RIGHT 2 - -MN908947.3 12419 12444 SARS-CoV-2_400_41_LEFT 1 + -MN908947.3 12794 12819 SARS-CoV-2_400_41_RIGHT 1 - -MN908947.3 12752 12774 SARS-CoV-2_400_42_LEFT 2 + -MN908947.3 13121 13146 SARS-CoV-2_400_42_RIGHT 2 - -MN908947.3 13075 13099 SARS-CoV-2_400_43_LEFT 1 + -MN908947.3 13458 13480 SARS-CoV-2_400_43_RIGHT 1 - -MN908947.3 13415 13435 SARS-CoV-2_400_44_LEFT 2 + -MN908947.3 13787 13815 SARS-CoV-2_400_44_RIGHT 2 - -MN908947.3 13738 13767 SARS-CoV-2_400_45_LEFT 1 + -MN908947.3 14120 14144 SARS-CoV-2_400_45_RIGHT 1 - -MN908947.3 14073 14100 SARS-CoV-2_400_46_LEFT 2 + -MN908947.3 14427 14457 SARS-CoV-2_400_46_RIGHT 2 - -MN908947.3 14375 14407 SARS-CoV-2_400_47_LEFT 1 + -MN908947.3 14745 14775 SARS-CoV-2_400_47_RIGHT 1 - -MN908947.3 14700 14725 SARS-CoV-2_400_48_LEFT 2 + -MN908947.3 15065 15095 SARS-CoV-2_400_48_RIGHT 2 - -MN908947.3 15016 15045 SARS-CoV-2_400_49_LEFT 1 + -MN908947.3 15386 15416 SARS-CoV-2_400_49_RIGHT 1 - -MN908947.3 15342 15366 SARS-CoV-2_400_50_LEFT 2 + -MN908947.3 15716 15742 SARS-CoV-2_400_50_RIGHT 2 - -MN908947.3 15659 15688 SARS-CoV-2_400_51_LEFT 1 + -MN908947.3 16028 16059 SARS-CoV-2_400_51_RIGHT 1 - -MN908947.3 15964 15998 SARS-CoV-2_400_52_LEFT 2 + -MN908947.3 16331 16364 SARS-CoV-2_400_52_RIGHT 2 - -MN908947.3 16285 16311 SARS-CoV-2_400_53_LEFT 1 + -MN908947.3 16650 16679 SARS-CoV-2_400_53_RIGHT 1 - -MN908947.3 16603 16630 SARS-CoV-2_400_54_LEFT 2 + -MN908947.3 16624 16647 SARS-CoV-2_400_54_LEFT_alt 2 + -MN908947.3 16985 17011 SARS-CoV-2_400_54_RIGHT 2 - -MN908947.3 17004 17033 SARS-CoV-2_400_54_RIGHT_alt 2 - -MN908947.3 16929 16954 SARS-CoV-2_400_55_LEFT 1 + -MN908947.3 16962 16994 SARS-CoV-2_400_55_LEFT_alt 1 + -MN908947.3 17301 17329 SARS-CoV-2_400_55_RIGHT 1 - -MN908947.3 17333 17362 SARS-CoV-2_400_55_RIGHT_alt 1 - -MN908947.3 17182 17212 SARS-CoV-2_400_56_LEFT 2 + -MN908947.3 17560 17582 SARS-CoV-2_400_56_RIGHT 2 - -MN908947.3 17478 17507 SARS-CoV-2_400_57_LEFT 1 + -MN908947.3 17859 17886 SARS-CoV-2_400_57_RIGHT 1 - -MN908947.3 17813 17839 SARS-CoV-2_400_58_LEFT 2 + -MN908947.3 18181 18212 SARS-CoV-2_400_58_RIGHT 2 - -MN908947.3 18121 18153 SARS-CoV-2_400_59_LEFT 1 + -MN908947.3 18504 18527 SARS-CoV-2_400_59_RIGHT 1 - -MN908947.3 18460 18484 SARS-CoV-2_400_60_LEFT 2 + -MN908947.3 18835 18860 SARS-CoV-2_400_60_RIGHT 2 - -MN908947.3 18789 18815 SARS-CoV-2_400_61_LEFT 1 + -MN908947.3 19170 19195 SARS-CoV-2_400_61_RIGHT 1 - -MN908947.3 19101 19134 SARS-CoV-2_400_62_LEFT 2 + -MN908947.3 19469 19495 SARS-CoV-2_400_62_RIGHT 2 - -MN908947.3 19415 19449 SARS-CoV-2_400_63_LEFT 1 + -MN908947.3 19770 19796 SARS-CoV-2_400_63_RIGHT 1 - -MN908947.3 19721 19750 SARS-CoV-2_400_64_LEFT 2 + -MN908947.3 20091 20121 SARS-CoV-2_400_64_RIGHT 2 - -MN908947.3 20028 20054 SARS-CoV-2_400_65_LEFT 1 + -MN908947.3 20408 20441 SARS-CoV-2_400_65_RIGHT 1 - -MN908947.3 20358 20388 SARS-CoV-2_400_66_LEFT 2 + -MN908947.3 20729 20758 SARS-CoV-2_400_66_RIGHT 2 - -MN908947.3 20650 20676 SARS-CoV-2_400_67_LEFT_alt 1 + -MN908947.3 20680 20708 SARS-CoV-2_400_67_LEFT 1 + -MN908947.3 21018 21051 SARS-CoV-2_400_67_RIGHT_alt 1 - -MN908947.3 21047 21080 SARS-CoV-2_400_67_RIGHT 1 - -MN908947.3 20991 21018 SARS-CoV-2_400_68_LEFT 2 + -MN908947.3 21372 21402 SARS-CoV-2_400_68_RIGHT 2 - -MN908947.3 21322 21352 SARS-CoV-2_400_69_LEFT 1 + -MN908947.3 21696 21722 SARS-CoV-2_400_69_RIGHT 1 - -MN908947.3 21579 21607 SARS-CoV-2_400_70_LEFT 2 + -MN908947.3 21927 21960 SARS-CoV-2_400_70_RIGHT 2 - -MN908947.3 21866 21894 SARS-CoV-2_400_71_LEFT 1 + -MN908947.3 22238 22266 SARS-CoV-2_400_71_RIGHT 1 - -MN908947.3 22156 22189 SARS-CoV-2_400_72_LEFT 2 + -MN908947.3 22517 22547 SARS-CoV-2_400_72_RIGHT 2 - -MN908947.3 22466 22494 SARS-CoV-2_400_73_LEFT 1 + -MN908947.3 22839 22866 SARS-CoV-2_400_73_RIGHT 1 - -MN908947.3 22742 22774 SARS-CoV-2_400_74_LEFT 2 + -MN908947.3 23119 23140 SARS-CoV-2_400_74_RIGHT 2 - -MN908947.3 22922 22954 SARS-CoV-2_400_75_LEFT 1 + -MN908947.3 23078 23109 SARS-CoV-2_400_75_LEFT_alt 1 + -MN908947.3 23296 23324 SARS-CoV-2_400_75_RIGHT 1 - -MN908947.3 23452 23478 SARS-CoV-2_400_75_RIGHT_alt 1 - -MN908947.3 23229 23258 SARS-CoV-2_400_76_LEFT 2 + -MN908947.3 23609 23631 SARS-CoV-2_400_76_RIGHT 2 - -MN908947.3 23563 23589 SARS-CoV-2_400_77_LEFT 1 + -MN908947.3 23914 23944 SARS-CoV-2_400_77_RIGHT 1 - -MN908947.3 23823 23853 SARS-CoV-2_400_78_LEFT 2 + -MN908947.3 24209 24231 SARS-CoV-2_400_78_RIGHT 2 - -MN908947.3 24160 24189 SARS-CoV-2_400_79_LEFT 1 + -MN908947.3 24535 24560 SARS-CoV-2_400_79_RIGHT 1 - -MN908947.3 24442 24468 SARS-CoV-2_400_80_LEFT 2 + -MN908947.3 24815 24839 SARS-CoV-2_400_80_RIGHT 2 - -MN908947.3 24751 24774 SARS-CoV-2_400_81_LEFT 1 + -MN908947.3 25120 25151 SARS-CoV-2_400_81_RIGHT 1 - -MN908947.3 25053 25082 SARS-CoV-2_400_82_LEFT 2 + -MN908947.3 25423 25452 SARS-CoV-2_400_82_RIGHT 2 - -MN908947.3 25372 25402 SARS-CoV-2_400_83_LEFT 1 + -MN908947.3 25744 25777 SARS-CoV-2_400_83_RIGHT 1 - -MN908947.3 25696 25724 SARS-CoV-2_400_84_LEFT 2 + -MN908947.3 25718 25743 SARS-CoV-2_400_84_LEFT_alt 2 + -MN908947.3 26059 26086 SARS-CoV-2_400_84_RIGHT 2 - -MN908947.3 26107 26131 SARS-CoV-2_400_84_RIGHT_alt 2 - -MN908947.3 26011 26039 SARS-CoV-2_400_85_LEFT 1 + -MN908947.3 26382 26411 SARS-CoV-2_400_85_RIGHT 1 - -MN908947.3 26339 26362 SARS-CoV-2_400_86_LEFT 2 + -MN908947.3 26730 26756 SARS-CoV-2_400_86_RIGHT 2 - -MN908947.3 26593 26621 SARS-CoV-2_400_87_LEFT_alt 1 + -MN908947.3 26639 26672 SARS-CoV-2_400_87_LEFT 1 + -MN908947.3 26989 27009 SARS-CoV-2_400_87_RIGHT_alt 1 - -MN908947.3 27011 27038 SARS-CoV-2_400_87_RIGHT 1 - -MN908947.3 26965 26989 SARS-CoV-2_400_88_LEFT 2 + -MN908947.3 27342 27372 SARS-CoV-2_400_88_RIGHT 2 - -MN908947.3 27218 27251 SARS-CoV-2_400_89_LEFT 1 + -MN908947.3 27583 27603 SARS-CoV-2_400_89_RIGHT 1 - -MN908947.3 27530 27558 SARS-CoV-2_400_90_LEFT 2 + -MN908947.3 27927 27950 SARS-CoV-2_400_90_RIGHT 2 - -MN908947.3 27832 27860 SARS-CoV-2_400_91_LEFT 1 + -MN908947.3 28209 28237 SARS-CoV-2_400_91_RIGHT 1 - -MN908947.3 28135 28166 SARS-CoV-2_400_92_LEFT 2 + -MN908947.3 28513 28539 SARS-CoV-2_400_92_RIGHT 2 - -MN908947.3 28473 28493 SARS-CoV-2_400_93_LEFT 1 + -MN908947.3 28849 28873 SARS-CoV-2_400_93_RIGHT 1 - -MN908947.3 28808 28829 SARS-CoV-2_400_94_LEFT 2 + -MN908947.3 29203 29224 SARS-CoV-2_400_94_RIGHT 2 - -MN908947.3 29159 29183 SARS-CoV-2_400_95_LEFT 1 + -MN908947.3 29538 29559 SARS-CoV-2_400_95_RIGHT 1 - -MN908947.3 29462 29486 SARS-CoV-2_400_96_LEFT_alt 2 + -MN908947.3 29493 29515 SARS-CoV-2_400_96_LEFT 2 + -MN908947.3 29840 29873 SARS-CoV-2_400_96_RIGHT 2 - diff --git a/sars-cov-2/artic/v5.3.2_400/info.yml b/sars-cov-2/artic/v5.3.2_400/info.yml deleted file mode 100644 index 1b18e82..0000000 --- a/sars-cov-2/artic/v5.3.2_400/info.yml +++ /dev/null @@ -1,18 +0,0 @@ -schema_version: 0.9.0 -name: artic-v5.3.2_400 -organism: sars-cov-2 -developers: -- organisation_name: ARTIC network - home_page: https://artic.network/ -vendors: -- organisation_name: IDT - kit_name: '10016495' -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.3.2_400 -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -derived_from: artic-v5.2.0_400 -notes: -- https://community.artic.network/t/sars-cov-2-version-5-3-2-scheme-release/462 -primer_checksum: primaschema:223ca9c2d1c7944e -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/artic/v5.3.2_400/primer.bed b/sars-cov-2/artic/v5.3.2_400/primer.bed deleted file mode 100644 index 675a903..0000000 --- a/sars-cov-2/artic/v5.3.2_400/primer.bed +++ /dev/null @@ -1,192 +0,0 @@ -MN908947.3 47 78 SARS-CoV-2_400_1_LEFT_1 1 + CTCTTGTAGATCTGTTCTCTAAACGAACTTT -MN908947.3 419 447 SARS-CoV-2_400_1_RIGHT_1 1 - AAAACGCCTTTTTCAACTTCTACTAAGC -MN908947.3 344 366 SARS-CoV-2_400_2_LEFT_0 2 + TCGTACGTGGCTTTGGAGACTC -MN908947.3 707 732 SARS-CoV-2_400_2_RIGHT_0 2 - TCTTCATAAGGATCAGTGCCAAGCT -MN908947.3 638 661 SARS-CoV-2_400_3_LEFT_1 1 + AGAACGGTAATAAAGGAGCTGGT -MN908947.3 1018 1047 SARS-CoV-2_400_3_RIGHT_0 1 - TTTGCCAATTTAATTTCAAAAGGTGTCTG -MN908947.3 970 995 SARS-CoV-2_400_4_LEFT_0 2 + CATGAAATTGCTTGGTACACGGAAC -MN908947.3 1340 1370 SARS-CoV-2_400_4_RIGHT_0 2 - AAATTTTAACAACAGCATTTTGGGGTAAGT -MN908947.3 1292 1320 SARS-CoV-2_400_5_LEFT_0 1 + TTTGTGGCACTGAGAATTTGACTAAAGA -MN908947.3 1660 1692 SARS-CoV-2_400_5_RIGHT_0 1 - ATAATGGCGATCTCTTCATTAAGTTTAAAGTC -MN908947.3 1574 1596 SARS-CoV-2_400_6_LEFT_1 2 + GTGTTGTTGGAGAAGGTTCCGA -MN908947.3 1945 1972 SARS-CoV-2_400_6_RIGHT_1 2 - TATTGTTATAGCGGCCTTCTGTAAAAC -MN908947.3 1882 1905 SARS-CoV-2_400_7_LEFT_2 1 + GCTGCTCGTGTTGTACGATCAAT -MN908947.3 2259 2284 SARS-CoV-2_400_7_RIGHT_2 1 - CTCCTTAATTTCCTTTGCACAGGTG -MN908947.3 2229 2252 SARS-CoV-2_400_8_LEFT_0 2 + TGCTTGTGAAATTGTCGGTGGAC -MN908947.3 2603 2629 SARS-CoV-2_400_8_RIGHT_0 2 - AAGCCCGTTAATACAAACTGGTGTAC -MN908947.3 2533 2563 SARS-CoV-2_400_9_LEFT_0 1 + GTCTTGAAAACTGGTGATTTACAACCATTA -MN908947.3 2900 2933 SARS-CoV-2_400_9_RIGHT_0 1 - GTAATTCAGATACTGGTTGCAAAGTTTTTATGA -MN908947.3 2854 2880 SARS-CoV-2_400_10_LEFT_0 2 + CTCGGTACAGAAGTAAATGAGTTCGC -MN908947.3 3233 3254 SARS-CoV-2_400_10_RIGHT_0 2 - TGTCCTCACTGCCGTCTTGTT -MN908947.3 3184 3213 SARS-CoV-2_400_11_LEFT_0 1 + GAGCAAGAAGAAGATTGGTTAGATGATGA -MN908947.3 3560 3584 SARS-CoV-2_400_11_RIGHT_0 1 - CGCTTAAAACACAACTACCACCCA -MN908947.3 3510 3540 SARS-CoV-2_400_12_LEFT_0 2 + CATGCAAGTTGAATCTGATGATTACATAGC -MN908947.3 3883 3913 SARS-CoV-2_400_12_RIGHT_0 2 - AGTTATAAATGGCTTAACTTCCTCTTTAGG -MN908947.3 3791 3824 SARS-CoV-2_400_13_LEFT_0 1 + CTGTCTTTGATAAAAATCTCTATGACAAACTTG -MN908947.3 4147 4180 SARS-CoV-2_400_13_RIGHT_0 1 - CTTTTTAGTAGGTATAACCACAGCAGTTAAAAC -MN908947.3 4079 4108 SARS-CoV-2_400_14_LEFT_0 2 + GTGACATTGACATCACTTTCTTAAAGAAA -MN908947.3 4457 4488 SARS-CoV-2_400_14_RIGHT_0 2 - CCCTTATATTTACGCTGTATAGTTGAAACTA -MN908947.3 4403 4425 SARS-CoV-2_400_15_LEFT_0 1 + CACATGCAGAAGAAACACGCAA -MN908947.3 4776 4803 SARS-CoV-2_400_15_RIGHT_0 1 - TCTTTATAGGAACCAGCAAGTGAGATG -MN908947.3 4723 4756 SARS-CoV-2_400_16_LEFT_0 2 + AATGGTTATCTTACTTCTTCTTCTAAAACACCT -MN908947.3 5089 5119 SARS-CoV-2_400_16_RIGHT_0 2 - AAATGTTTTACCTTCATGTGAATTATGAGG -MN908947.3 5036 5063 SARS-CoV-2_400_17_LEFT_0 1 + GACAACAGTTTGGTCCAACTTATTTGG -MN908947.3 5398 5429 SARS-CoV-2_400_17_RIGHT_0 1 - CTGTCTTATTACAGTAGGCTAAGATAAGTGC -MN908947.3 5344 5370 SARS-CoV-2_400_18_LEFT_0 2 + GCTCTACAAGATGCTTATTACAGAGC -MN908947.3 5716 5744 SARS-CoV-2_400_18_RIGHT_0 2 - ACTCACTAGCACAAGTAAATGTACCATG -MN908947.3 5671 5696 SARS-CoV-2_400_19_LEFT_0 1 + CCTTTTGTTATGATGTCAGCACCAC -MN908947.3 6031 6062 SARS-CoV-2_400_19_RIGHT_0 1 - CACATACAAACTTAAAATTATCGAAGCTTGC -MN908947.3 5891 5923 SARS-CoV-2_400_20_LEFT_0 2 + CCATAAAACCAGTTACTTATAAATTGGATGGT -MN908947.3 6257 6288 SARS-CoV-2_400_20_RIGHT_0 2 - CAGGTATTTGGTTTATACGTGGCTTTATTAG -MN908947.3 6204 6237 SARS-CoV-2_400_21_LEFT_0 1 + GAAAGGAGCTAAATTGTTACATAAACCTATTGT -MN908947.3 6562 6595 SARS-CoV-2_400_21_RIGHT_0 1 - AGGTTTCTTAATAGTAAGACTAGAATTGTCTAC -MN908947.3 6515 6542 SARS-CoV-2_400_22_LEFT_0 2 + TAAAAATTACAGAAGAGGTTGGCCACA -MN908947.3 6882 6915 SARS-CoV-2_400_22_RIGHT_0 2 - TAATTAAATGAAGCCTCTAGACAAAATTTACCG -MN908947.3 6823 6854 SARS-CoV-2_400_23_LEFT_0 1 + AATTCTAGAATTAAAGCATCTATGCCGACTA -MN908947.3 7199 7229 SARS-CoV-2_400_23_RIGHT_0 1 - CAAAAGCAGTTAAATCCCATTTAAAAGATG -MN908947.3 7145 7179 SARS-CoV-2_400_24_LEFT_0 2 + GTTTAGATTCTTTAGACACCTATCCTTCTTTAGA -MN908947.3 7518 7545 SARS-CoV-2_400_24_RIGHT_0 2 - ACAATAGTTGTACATTCGACTCTTGTT -MN908947.3 7456 7482 SARS-CoV-2_400_25_LEFT_0 1 + GTGCATGTTGTAGACGGTTGTAATTC -MN908947.3 7819 7850 SARS-CoV-2_400_25_RIGHT_0 1 - CTCTCAGGTTGTCTAAGTTAACAAAATGAGA -MN908947.3 7768 7797 SARS-CoV-2_400_26_LEFT_0 2 + CATCTTTACTTTGATAAAGCTGGTCAAAA -MN908947.3 8136 8169 SARS-CoV-2_400_26_RIGHT_0 2 - GAAATAAAAGTAGATAAGACATTGTCTAAGGAC -MN908947.3 8085 8112 SARS-CoV-2_400_27_LEFT_0 1 + AAAACTCAAAACACTAGTTGCAACTGC -MN908947.3 8468 8498 SARS-CoV-2_400_27_RIGHT_0 1 - CACATGTCAACTTAAAAGGTAAGTTATTCT -MN908947.3 8406 8436 SARS-CoV-2_400_28_LEFT_0 2 + CGTTAAAGATTTCATGTCATTGTCTGAACA -MN908947.3 8781 8806 SARS-CoV-2_400_28_RIGHT_0 2 - ATTAGTATAACTACCACCACGCTGG -MN908947.3 8732 8761 SARS-CoV-2_400_29_LEFT_0 1 + CAGATACTTGTTTTGCTAACAAACATGCT -MN908947.3 9107 9129 SARS-CoV-2_400_29_RIGHT_0 1 - ACATAACGTGTGTCAGGGCGTA -MN908947.3 9023 9052 SARS-CoV-2_400_30_LEFT_0 2 + CAATTTTTAAAGATGCTTCTGGTAAGCCA -MN908947.3 9397 9423 SARS-CoV-2_400_30_RIGHT_0 2 - ACAATACCACCAGCTACTATAGATGC -MN908947.3 9299 9324 SARS-CoV-2_400_31_LEFT_1 1 + GATCTTTACCAGGAGTTTTCTGTGG -MN908947.3 9673 9706 SARS-CoV-2_400_31_RIGHT_0 1 - ACAAATGATATAAGCAATTGTTATCCAGAAAGG -MN908947.3 9571 9604 SARS-CoV-2_400_32_LEFT_0 2 + GGTGTTTATTCTGTTATTTACTTGTACTTGACA -MN908947.3 9949 9971 SARS-CoV-2_400_32_RIGHT_0 2 - TTGCGAGATGACAACAAGCAGC -MN908947.3 9896 9929 SARS-CoV-2_400_33_LEFT_0 1 + ATAATAAGTACAAGTATTTTAGTGGAGCAATGG -MN908947.3 10266 10295 SARS-CoV-2_400_33_RIGHT_0 1 - AATGTCCAATAACCCTGAGTTGAACATTA -MN908947.3 10215 10245 SARS-CoV-2_400_34_LEFT_0 2 + TGAAGATTTACTCATTCGTAAGTCTAATCA -MN908947.3 10587 10615 SARS-CoV-2_400_34_RIGHT_0 2 - GTCAACAAAAGGTCCATAAAAGTTACCT -MN908947.3 10527 10557 SARS-CoV-2_400_35_LEFT_0 1 + TTTTTGTTACATGCACCATATGGAATTACC -MN908947.3 10897 10927 SARS-CoV-2_400_35_RIGHT_0 1 - AAATTCATCTTCTAATAAAGCACTACCCAA -MN908947.3 10832 10865 SARS-CoV-2_400_36_LEFT_0 2 + CCGTTTTAGATATGTGTGCTTCATTAAAAGAAT -MN908947.3 11201 11232 SARS-CoV-2_400_36_RIGHT_0 2 - GGCATATAGACCATATTAAAATAAGCTACAG -MN908947.3 11152 11181 SARS-CoV-2_400_37_LEFT_0 1 + AAACATAAGCATGCATTTCTCTGTTTGTT -MN908947.3 11514 11536 SARS-CoV-2_400_37_RIGHT_0 1 - ACCTCTGGCCAAAAACATGACA -MN908947.3 11463 11494 SARS-CoV-2_400_38_LEFT_0 2 + GTGGGCTCTTATAATCTCTGTTACTTCTAAC -MN908947.3 11832 11863 SARS-CoV-2_400_38_RIGHT_0 2 - CTTTACATCTGACATTTTAGACTGTACAGTG -MN908947.3 11785 11811 SARS-CoV-2_400_39_LEFT_0 1 + AACATTAAATTGTTGGGTGTTGGTGG -MN908947.3 12161 12185 SARS-CoV-2_400_39_RIGHT_0 1 - CAGAATCACCATTAGCAACAGCCT -MN908947.3 12112 12137 SARS-CoV-2_400_40_LEFT_0 2 + TCCCTTCCATCATATGCAGCTTTTG -MN908947.3 12477 12510 SARS-CoV-2_400_40_RIGHT_0 2 - TTTTTATATGTGTTATAGTCTGGTATGACAACC -MN908947.3 12419 12444 SARS-CoV-2_400_41_LEFT_0 1 + CAAGAGATGGTTGTGTTCCCTTGAA -MN908947.3 12794 12819 SARS-CoV-2_400_41_RIGHT_0 1 - AACAGTGCAAGTACAAACCTACCTC -MN908947.3 12752 12774 SARS-CoV-2_400_42_LEFT_0 2 + GCACTGATGACAATGCGTTAGC -MN908947.3 13121 13146 SARS-CoV-2_400_42_RIGHT_0 2 - CAATTAGTGATTGGTTGTCCCCCAC -MN908947.3 13075 13099 SARS-CoV-2_400_43_LEFT_0 1 + GCTTTTGCTGTAGATGCTGCTAAA -MN908947.3 13458 13480 SARS-CoV-2_400_43_RIGHT_0 1 - CACCGCAAACCCGTTTAAAAAC -MN908947.3 13415 13435 SARS-CoV-2_400_44_LEFT_0 2 + ATCAACTCCGCGAACCCATG -MN908947.3 13787 13815 SARS-CoV-2_400_44_RIGHT_0 2 - TGCCATTGTGTATTTAGTAAGACGTTGA -MN908947.3 13738 13767 SARS-CoV-2_400_45_LEFT_0 1 + ACTTCTTTAAGTTTAGAATAGACGGTGAC -MN908947.3 14120 14144 SARS-CoV-2_400_45_RIGHT_0 1 - TCTACAACAGGAACTCCACTACCT -MN908947.3 14073 14100 SARS-CoV-2_400_46_LEFT_0 2 + CTCAATGGTAACTGGTATGATTTCGGT -MN908947.3 14427 14457 SARS-CoV-2_400_46_RIGHT_0 2 - TGGAACACCATCAACAAATATTTTTCTCAC -MN908947.3 14375 14407 SARS-CoV-2_400_47_LEFT_0 1 + CTTTAATGTTTTATTCTCTACAGTGTTCCCAC -MN908947.3 14745 14775 SARS-CoV-2_400_47_RIGHT_0 1 - ATCCTGAGCAAAGAAGAAGTGTTTTAATTC -MN908947.3 14700 14725 SARS-CoV-2_400_48_LEFT_0 2 + GACTTTGCTGTGTCTAAGGGTTTCT -MN908947.3 15065 15095 SARS-CoV-2_400_48_RIGHT_0 2 - TTCTTTGCACTAATGGCATACTTAAGATTC -MN908947.3 15016 15045 SARS-CoV-2_400_49_LEFT_0 1 + CACTTTTCGCATATACAAAACGTAATGTC -MN908947.3 15386 15416 SARS-CoV-2_400_49_RIGHT_0 1 - CACTCATTAGCTAATCTATAGAAACGGTGT -MN908947.3 15342 15366 SARS-CoV-2_400_50_LEFT_0 2 + TCACTTGTTCTTGCTCGCAAACAT -MN908947.3 15716 15742 SARS-CoV-2_400_50_RIGHT_0 2 - TATTGAAACACACAACAGCATCGTCA -MN908947.3 15659 15688 SARS-CoV-2_400_51_LEFT_0 1 + CTTTGTGAATGAGTTTTACGCATATTTGC -MN908947.3 16028 16059 SARS-CoV-2_400_51_RIGHT_0 1 - AGGATGTTTAGTAAGTGGGTAAGCATCTATA -MN908947.3 15992 16018 SARS-CoV-2_400_52_LEFT_2 2 + TGGTACACTTATGATTGAACGGTTCG -MN908947.3 16386 16409 SARS-CoV-2_400_52_RIGHT_2 2 - GTGACATCACAACCTGGAGCATT -MN908947.3 16285 16311 SARS-CoV-2_400_53_LEFT_0 1 + GTGCTTGCATACGTAGACCATTCTTA -MN908947.3 16650 16679 SARS-CoV-2_400_53_RIGHT_0 1 - GACAGTTTAAATGTCTCCTCAGTAGCTTT -MN908947.3 16624 16647 SARS-CoV-2_400_54_LEFT_1 2 + TCAAGCTTTTTGCAGCAGAAACG -MN908947.3 17004 17033 SARS-CoV-2_400_54_RIGHT_1 2 - ACATTGCTAGAAAACTCATCTGAGATATT -MN908947.3 16962 16994 SARS-CoV-2_400_55_LEFT_1 1 + CAAGAGCACTATGTTAGAATTACTGGCTTATA -MN908947.3 17333 17362 SARS-CoV-2_400_55_RIGHT_1 1 - TTTCATCAAAGACAACTATATCTGCTGTC -MN908947.3 17182 17212 SARS-CoV-2_400_56_LEFT_0 2 + CACTATGTGAGAAGGCATTAAAATATTTGC -MN908947.3 17560 17582 SARS-CoV-2_400_56_RIGHT_0 2 - ACAATTTCAGCAGGACAACGCC -MN908947.3 17478 17507 SARS-CoV-2_400_57_LEFT_0 1 + GGCACACTAGAACCAGAATATTTCAATTC -MN908947.3 17859 17886 SARS-CoV-2_400_57_RIGHT_0 1 - AGTGGTTTGAGTGAATATGACATAGTC -MN908947.3 17813 17839 SARS-CoV-2_400_58_LEFT_0 2 + GGGACTACCAACTCAAACTGTTGATT -MN908947.3 18181 18212 SARS-CoV-2_400_58_RIGHT_0 2 - ATCATAGAGATGAGTCTTCTATAGGTCATGT -MN908947.3 18121 18153 SARS-CoV-2_400_59_LEFT_0 1 + GTGTTGACACTAAATTCAAAACTGAAGGTTTA -MN908947.3 18504 18527 SARS-CoV-2_400_59_RIGHT_0 1 - CGCACTACATTCCAAGGAAGTCC -MN908947.3 18460 18484 SARS-CoV-2_400_60_LEFT_0 2 + CGCCTGGAGATCAATTTAAACACC -MN908947.3 18835 18860 SARS-CoV-2_400_60_RIGHT_0 2 - GCATCACAACTAGCTACATGTGCAT -MN908947.3 18789 18815 SARS-CoV-2_400_61_LEFT_0 1 + GGTAACCTACAAAGCAACCATGATCT -MN908947.3 19170 19195 SARS-CoV-2_400_61_RIGHT_0 1 - TCCAAAATAGGCATACACCATCTGT -MN908947.3 19087 19112 SARS-CoV-2_400_62_LEFT_2 2 + TCTATGATGCACAGCCTTGTAGTGA -MN908947.3 19469 19495 SARS-CoV-2_400_62_RIGHT_0 2 - GTCTACAGACAGCACCACCTAAATTG -MN908947.3 19415 19449 SARS-CoV-2_400_63_LEFT_0 1 + AGTGTCAGATATAGATTATGTACCACTAAAGTCT -MN908947.3 19770 19796 SARS-CoV-2_400_63_RIGHT_0 1 - GCCCAAAGCTCAAATGCTACATTAAC -MN908947.3 19721 19750 SARS-CoV-2_400_64_LEFT_0 2 + AGTTGATGGTGTTGATGTAGAATTGTTTG -MN908947.3 20091 20121 SARS-CoV-2_400_64_RIGHT_0 2 - TAATGTGACTCCATTAAGACTAGCTTGTTT -MN908947.3 20028 20054 SARS-CoV-2_400_65_LEFT_0 1 + GCCCGTAATGGTGTTCTTATTACAGA -MN908947.3 20408 20441 SARS-CoV-2_400_65_RIGHT_0 1 - GTACTGTCCATAGGAATAAAATCTTCTAATTCA -MN908947.3 20358 20388 SARS-CoV-2_400_66_LEFT_0 2 + GGTTTACATCTACTGATTGGACTAGCTAAA -MN908947.3 20729 20758 SARS-CoV-2_400_66_RIGHT_0 2 - CACTATCACCATAATTTTGAAGGTCACAC -MN908947.3 20650 20676 SARS-CoV-2_400_67_LEFT_1 1 + AATTACAATCTAGTCAAGCGTGGCAA -MN908947.3 21018 21051 SARS-CoV-2_400_67_RIGHT_1 1 - CATATCACTAATAATGAGATCCCATTTATTAGC -MN908947.3 20991 21018 SARS-CoV-2_400_68_LEFT_0 2 + ATTGGTGATTGTGCAACTGTACATACA -MN908947.3 21372 21402 SARS-CoV-2_400_68_RIGHT_0 2 - ACTCATGTCAAATAAAGAATAGGAAGACAA -MN908947.3 21322 21352 SARS-CoV-2_400_69_LEFT_0 1 + ATGTCATGCATGCAAATTACATATTTTGGA -MN908947.3 21696 21722 SARS-CoV-2_400_69_RIGHT_0 1 - AGTCCTGAGTTGAATGTAAAACTGAG -MN908947.3 21579 21607 SARS-CoV-2_400_70_LEFT_0 2 + TTTATTGCCACTAGTCTCTAGTCAGTGT -MN908947.3 21927 21960 SARS-CoV-2_400_70_RIGHT_0 2 - AATTCACAGACTTTAATAACAACATTAGTAGCG -MN908947.3 21866 21894 SARS-CoV-2_400_71_LEFT_0 1 + GAGGCTGGATTTTTGGTACTACTTTAGA -MN908947.3 22238 22266 SARS-CoV-2_400_71_RIGHT_0 1 - ATGTTAATACCTATTGGCAAATCTACCA -MN908947.3 22156 22189 SARS-CoV-2_400_72_LEFT_0 2 + GGTTATTTTAAAATATATTCTAAGCACACGCCT -MN908947.3 22517 22547 SARS-CoV-2_400_72_RIGHT_0 2 - ATCTAACAATAGATTCTGTTGGTTGGACTC -MN908947.3 22466 22494 SARS-CoV-2_400_73_LEFT_0 1 + CGTTGAAATCCTTCACTGTAGAAAAAGG -MN908947.3 22839 22866 SARS-CoV-2_400_73_RIGHT_0 1 - GCTATAACGCAGCCTGTAAAATCATCT -MN908947.3 22742 22774 SARS-CoV-2_400_74_LEFT_0 2 + ATGTCTATGCAGATTCATTTGTAATTAGAGGT -MN908947.3 23119 23140 SARS-CoV-2_400_74_RIGHT_0 2 - TCCACAAACAGTTGCTGGTGC -MN908947.3 23078 23109 SARS-CoV-2_400_75_LEFT_1 1 + AACCATACAGAGTAGTAGTACTTTCTTTTGA -MN908947.3 23452 23478 SARS-CoV-2_400_75_RIGHT_1 1 - CCTGTAGAATAAACACGCCAAGTAGG -MN908947.3 23229 23258 SARS-CoV-2_400_76_LEFT_0 2 + CAAAAAGTTTCTGCCTTTCCAACAATTTG -MN908947.3 23609 23631 SARS-CoV-2_400_76_RIGHT_0 2 - TGACTAGCTACACTACGTGCCC -MN908947.3 23563 23589 SARS-CoV-2_400_77_LEFT_0 1 + GCAGGTATATGCGCTAGTTATCAGAC -MN908947.3 23914 23944 SARS-CoV-2_400_77_RIGHT_0 1 - AATTGGTGGTGTTTTGTAAATTTGTTTGAC -MN908947.3 23823 23853 SARS-CoV-2_400_78_LEFT_0 2 + GCAATATGGCAGTTTTTGTACACAATTAAA -MN908947.3 24209 24231 SARS-CoV-2_400_78_RIGHT_0 2 - GCACCAAAGGTCCAACCAGAAG -MN908947.3 24160 24189 SARS-CoV-2_400_79_LEFT_0 1 + GATGAAATGATTGCTCAATACACTTCTGC -MN908947.3 24535 24560 SARS-CoV-2_400_79_RIGHT_0 1 - TGCCTGTGATCAACCTATCAATTTG -MN908947.3 24442 24468 SARS-CoV-2_400_80_LEFT_0 2 + ACGCTTGTTAAACAACTTAGCTCCAA -MN908947.3 24815 24839 SARS-CoV-2_400_80_RIGHT_0 2 - CTTCACGAGGAAAGTGTGCTTTTC -MN908947.3 24751 24774 SARS-CoV-2_400_81_LEFT_0 1 + CATGTGACTTATGTCCCTGCACA -MN908947.3 25120 25151 SARS-CoV-2_400_81_RIGHT_0 1 - GAGATTCATTTAAATTCTTGGCAACCTCATT -MN908947.3 25053 25082 SARS-CoV-2_400_82_LEFT_0 2 + TGATTTAGGTGACATCTCTGGCATTAATG -MN908947.3 25423 25452 SARS-CoV-2_400_82_RIGHT_0 2 - GATTTCACCTTGCTTCAAAGTTACAGTTC -MN908947.3 25372 25402 SARS-CoV-2_400_83_LEFT_0 1 + CATTACACATAAACGAACTTATGGATTTGT -MN908947.3 25744 25777 SARS-CoV-2_400_83_RIGHT_0 1 - GCCAAAGCCTCATTATTATTCTTACAAAGTTTA -MN908947.3 25653 25680 SARS-CoV-2_400_84_LEFT_2 2 + GTAACAGTTTACTCACACCTTTTGCTC -MN908947.3 26048 26072 SARS-CoV-2_400_84_RIGHT_2 2 - TGTTCAACACCARTGTCTGTACTC -MN908947.3 26011 26039 SARS-CoV-2_400_85_LEFT_0 1 + TCACTTCAGACTATTACCAGCTGTACTC -MN908947.3 26382 26411 SARS-CoV-2_400_85_RIGHT_0 1 - AAAGAAGGTTTTACAAGACTCACGTTAAC -MN908947.3 26339 26362 SARS-CoV-2_400_86_LEFT_0 2 + CATCCTTACTGCGCTTCGATTGT -MN908947.3 26730 26756 SARS-CoV-2_400_86_RIGHT_0 2 - ACCGGTGATCCAATTTATTCTGTAAA -MN908947.3 26593 26621 SARS-CoV-2_400_87_LEFT_1 1 + AGGTTTCCTATTCCTTACATGGATTTGT -MN908947.3 26989 27009 SARS-CoV-2_400_87_RIGHT_1 1 - CCTTGATGTCACAGCGTCCT -MN908947.3 26958 26981 SARS-CoV-2_400_88_LEFT_2 2 + GTGGACATCTTCGTATTGCTGGA -MN908947.3 27349 27376 SARS-CoV-2_400_88_RIGHT_2 2 - CCATTGGTTGCTCTTCATCTAATTGAG -MN908947.3 27200 27226 SARS-CoV-2_400_89_LEFT_2 1 + GATGTTTCATCTCGTTGACTTTCAGG -MN908947.3 27583 27603 SARS-CoV-2_400_89_RIGHT_0 1 - GCCGTCAGGACAAGCAAAAG -MN908947.3 27530 27558 SARS-CoV-2_400_90_LEFT_0 2 + TCATCCTCTAGCTGATAACAAATTTGCA -MN908947.3 27927 27950 SARS-CoV-2_400_90_RIGHT_0 2 - TTCTTGGTGAAATGCAGCTACAG -MN908947.3 27832 27860 SARS-CoV-2_400_91_LEFT_0 1 + TATCTTTTGGTTCTCACTTGAACTGCAA -MN908947.3 28209 28237 SARS-CoV-2_400_91_RIGHT_0 1 - CGAACGTCATGATACTCTAAAAAGTCTT -MN908947.3 28135 28166 SARS-CoV-2_400_92_LEFT_0 2 + TTCCTGTTTACCTTTTACAATTAATTGCCAG -MN908947.3 28513 28539 SARS-CoV-2_400_92_RIGHT_0 2 - CTTCGGTAGTAGCCAATTTGGTCATC -MN908947.3 28473 28493 SARS-CoV-2_400_93_LEFT_0 1 + TCGAGGACAAGGCGTTCCAA -MN908947.3 28849 28873 SARS-CoV-2_400_93_RIGHT_0 1 - GCCTGGAGTTGAATTTCTTGAACT -MN908947.3 28808 28829 SARS-CoV-2_400_94_LEFT_0 2 + GCAGTCAAGCCTCTTCTCGTT -MN908947.3 29203 29224 SARS-CoV-2_400_94_RIGHT_0 2 - CATTCCGAAGAACGCTGAAGC -MN908947.3 29159 29183 SARS-CoV-2_400_95_LEFT_0 1 + CTGATTACAAACATTGGCCGCAAA -MN908947.3 29538 29559 SARS-CoV-2_400_95_RIGHT_0 1 - ATCTGCCTTGTGTGGTCTGCA -MN908947.3 29462 29486 SARS-CoV-2_400_96_LEFT_1 2 + CTGCAGATTTGGATGATTTCTCCA -MN908947.3 29840 29873 SARS-CoV-2_400_96_RIGHT_0 2 - TTTGTCATTCTCCTAAGAAGCTATTAAAATCAC diff --git a/sars-cov-2/artic/v5.3.2_400/scheme.bed b/sars-cov-2/artic/v5.3.2_400/scheme.bed deleted file mode 100644 index 2da0b06..0000000 --- a/sars-cov-2/artic/v5.3.2_400/scheme.bed +++ /dev/null @@ -1,192 +0,0 @@ -MN908947.3 47 78 SARS-CoV-2_400_1_LEFT_1 1 + -MN908947.3 419 447 SARS-CoV-2_400_1_RIGHT_1 1 - -MN908947.3 344 366 SARS-CoV-2_400_2_LEFT_0 2 + -MN908947.3 707 732 SARS-CoV-2_400_2_RIGHT_0 2 - -MN908947.3 638 661 SARS-CoV-2_400_3_LEFT_1 1 + -MN908947.3 1018 1047 SARS-CoV-2_400_3_RIGHT_0 1 - -MN908947.3 970 995 SARS-CoV-2_400_4_LEFT_0 2 + -MN908947.3 1340 1370 SARS-CoV-2_400_4_RIGHT_0 2 - -MN908947.3 1292 1320 SARS-CoV-2_400_5_LEFT_0 1 + -MN908947.3 1660 1692 SARS-CoV-2_400_5_RIGHT_0 1 - -MN908947.3 1574 1596 SARS-CoV-2_400_6_LEFT_1 2 + -MN908947.3 1945 1972 SARS-CoV-2_400_6_RIGHT_1 2 - -MN908947.3 1882 1905 SARS-CoV-2_400_7_LEFT_2 1 + -MN908947.3 2259 2284 SARS-CoV-2_400_7_RIGHT_2 1 - -MN908947.3 2229 2252 SARS-CoV-2_400_8_LEFT_0 2 + -MN908947.3 2603 2629 SARS-CoV-2_400_8_RIGHT_0 2 - -MN908947.3 2533 2563 SARS-CoV-2_400_9_LEFT_0 1 + -MN908947.3 2900 2933 SARS-CoV-2_400_9_RIGHT_0 1 - -MN908947.3 2854 2880 SARS-CoV-2_400_10_LEFT_0 2 + -MN908947.3 3233 3254 SARS-CoV-2_400_10_RIGHT_0 2 - -MN908947.3 3184 3213 SARS-CoV-2_400_11_LEFT_0 1 + -MN908947.3 3560 3584 SARS-CoV-2_400_11_RIGHT_0 1 - -MN908947.3 3510 3540 SARS-CoV-2_400_12_LEFT_0 2 + -MN908947.3 3883 3913 SARS-CoV-2_400_12_RIGHT_0 2 - -MN908947.3 3791 3824 SARS-CoV-2_400_13_LEFT_0 1 + -MN908947.3 4147 4180 SARS-CoV-2_400_13_RIGHT_0 1 - -MN908947.3 4079 4108 SARS-CoV-2_400_14_LEFT_0 2 + -MN908947.3 4457 4488 SARS-CoV-2_400_14_RIGHT_0 2 - -MN908947.3 4403 4425 SARS-CoV-2_400_15_LEFT_0 1 + -MN908947.3 4776 4803 SARS-CoV-2_400_15_RIGHT_0 1 - -MN908947.3 4723 4756 SARS-CoV-2_400_16_LEFT_0 2 + -MN908947.3 5089 5119 SARS-CoV-2_400_16_RIGHT_0 2 - -MN908947.3 5036 5063 SARS-CoV-2_400_17_LEFT_0 1 + -MN908947.3 5398 5429 SARS-CoV-2_400_17_RIGHT_0 1 - -MN908947.3 5344 5370 SARS-CoV-2_400_18_LEFT_0 2 + -MN908947.3 5716 5744 SARS-CoV-2_400_18_RIGHT_0 2 - -MN908947.3 5671 5696 SARS-CoV-2_400_19_LEFT_0 1 + -MN908947.3 6031 6062 SARS-CoV-2_400_19_RIGHT_0 1 - -MN908947.3 5891 5923 SARS-CoV-2_400_20_LEFT_0 2 + -MN908947.3 6257 6288 SARS-CoV-2_400_20_RIGHT_0 2 - -MN908947.3 6204 6237 SARS-CoV-2_400_21_LEFT_0 1 + -MN908947.3 6562 6595 SARS-CoV-2_400_21_RIGHT_0 1 - -MN908947.3 6515 6542 SARS-CoV-2_400_22_LEFT_0 2 + -MN908947.3 6882 6915 SARS-CoV-2_400_22_RIGHT_0 2 - -MN908947.3 6823 6854 SARS-CoV-2_400_23_LEFT_0 1 + -MN908947.3 7199 7229 SARS-CoV-2_400_23_RIGHT_0 1 - -MN908947.3 7145 7179 SARS-CoV-2_400_24_LEFT_0 2 + -MN908947.3 7518 7545 SARS-CoV-2_400_24_RIGHT_0 2 - -MN908947.3 7456 7482 SARS-CoV-2_400_25_LEFT_0 1 + -MN908947.3 7819 7850 SARS-CoV-2_400_25_RIGHT_0 1 - -MN908947.3 7768 7797 SARS-CoV-2_400_26_LEFT_0 2 + -MN908947.3 8136 8169 SARS-CoV-2_400_26_RIGHT_0 2 - -MN908947.3 8085 8112 SARS-CoV-2_400_27_LEFT_0 1 + -MN908947.3 8468 8498 SARS-CoV-2_400_27_RIGHT_0 1 - -MN908947.3 8406 8436 SARS-CoV-2_400_28_LEFT_0 2 + -MN908947.3 8781 8806 SARS-CoV-2_400_28_RIGHT_0 2 - -MN908947.3 8732 8761 SARS-CoV-2_400_29_LEFT_0 1 + -MN908947.3 9107 9129 SARS-CoV-2_400_29_RIGHT_0 1 - -MN908947.3 9023 9052 SARS-CoV-2_400_30_LEFT_0 2 + -MN908947.3 9397 9423 SARS-CoV-2_400_30_RIGHT_0 2 - -MN908947.3 9299 9324 SARS-CoV-2_400_31_LEFT_1 1 + -MN908947.3 9673 9706 SARS-CoV-2_400_31_RIGHT_0 1 - -MN908947.3 9571 9604 SARS-CoV-2_400_32_LEFT_0 2 + -MN908947.3 9949 9971 SARS-CoV-2_400_32_RIGHT_0 2 - -MN908947.3 9896 9929 SARS-CoV-2_400_33_LEFT_0 1 + -MN908947.3 10266 10295 SARS-CoV-2_400_33_RIGHT_0 1 - -MN908947.3 10215 10245 SARS-CoV-2_400_34_LEFT_0 2 + -MN908947.3 10587 10615 SARS-CoV-2_400_34_RIGHT_0 2 - -MN908947.3 10527 10557 SARS-CoV-2_400_35_LEFT_0 1 + -MN908947.3 10897 10927 SARS-CoV-2_400_35_RIGHT_0 1 - -MN908947.3 10832 10865 SARS-CoV-2_400_36_LEFT_0 2 + -MN908947.3 11201 11232 SARS-CoV-2_400_36_RIGHT_0 2 - -MN908947.3 11152 11181 SARS-CoV-2_400_37_LEFT_0 1 + -MN908947.3 11514 11536 SARS-CoV-2_400_37_RIGHT_0 1 - -MN908947.3 11463 11494 SARS-CoV-2_400_38_LEFT_0 2 + -MN908947.3 11832 11863 SARS-CoV-2_400_38_RIGHT_0 2 - -MN908947.3 11785 11811 SARS-CoV-2_400_39_LEFT_0 1 + -MN908947.3 12161 12185 SARS-CoV-2_400_39_RIGHT_0 1 - -MN908947.3 12112 12137 SARS-CoV-2_400_40_LEFT_0 2 + -MN908947.3 12477 12510 SARS-CoV-2_400_40_RIGHT_0 2 - -MN908947.3 12419 12444 SARS-CoV-2_400_41_LEFT_0 1 + -MN908947.3 12794 12819 SARS-CoV-2_400_41_RIGHT_0 1 - -MN908947.3 12752 12774 SARS-CoV-2_400_42_LEFT_0 2 + -MN908947.3 13121 13146 SARS-CoV-2_400_42_RIGHT_0 2 - -MN908947.3 13075 13099 SARS-CoV-2_400_43_LEFT_0 1 + -MN908947.3 13458 13480 SARS-CoV-2_400_43_RIGHT_0 1 - -MN908947.3 13415 13435 SARS-CoV-2_400_44_LEFT_0 2 + -MN908947.3 13787 13815 SARS-CoV-2_400_44_RIGHT_0 2 - -MN908947.3 13738 13767 SARS-CoV-2_400_45_LEFT_0 1 + -MN908947.3 14120 14144 SARS-CoV-2_400_45_RIGHT_0 1 - -MN908947.3 14073 14100 SARS-CoV-2_400_46_LEFT_0 2 + -MN908947.3 14427 14457 SARS-CoV-2_400_46_RIGHT_0 2 - -MN908947.3 14375 14407 SARS-CoV-2_400_47_LEFT_0 1 + -MN908947.3 14745 14775 SARS-CoV-2_400_47_RIGHT_0 1 - -MN908947.3 14700 14725 SARS-CoV-2_400_48_LEFT_0 2 + -MN908947.3 15065 15095 SARS-CoV-2_400_48_RIGHT_0 2 - -MN908947.3 15016 15045 SARS-CoV-2_400_49_LEFT_0 1 + -MN908947.3 15386 15416 SARS-CoV-2_400_49_RIGHT_0 1 - -MN908947.3 15342 15366 SARS-CoV-2_400_50_LEFT_0 2 + -MN908947.3 15716 15742 SARS-CoV-2_400_50_RIGHT_0 2 - -MN908947.3 15659 15688 SARS-CoV-2_400_51_LEFT_0 1 + -MN908947.3 16028 16059 SARS-CoV-2_400_51_RIGHT_0 1 - -MN908947.3 15992 16018 SARS-CoV-2_400_52_LEFT_2 2 + -MN908947.3 16386 16409 SARS-CoV-2_400_52_RIGHT_2 2 - -MN908947.3 16285 16311 SARS-CoV-2_400_53_LEFT_0 1 + -MN908947.3 16650 16679 SARS-CoV-2_400_53_RIGHT_0 1 - -MN908947.3 16624 16647 SARS-CoV-2_400_54_LEFT_1 2 + -MN908947.3 17004 17033 SARS-CoV-2_400_54_RIGHT_1 2 - -MN908947.3 16962 16994 SARS-CoV-2_400_55_LEFT_1 1 + -MN908947.3 17333 17362 SARS-CoV-2_400_55_RIGHT_1 1 - -MN908947.3 17182 17212 SARS-CoV-2_400_56_LEFT_0 2 + -MN908947.3 17560 17582 SARS-CoV-2_400_56_RIGHT_0 2 - -MN908947.3 17478 17507 SARS-CoV-2_400_57_LEFT_0 1 + -MN908947.3 17859 17886 SARS-CoV-2_400_57_RIGHT_0 1 - -MN908947.3 17813 17839 SARS-CoV-2_400_58_LEFT_0 2 + -MN908947.3 18181 18212 SARS-CoV-2_400_58_RIGHT_0 2 - -MN908947.3 18121 18153 SARS-CoV-2_400_59_LEFT_0 1 + -MN908947.3 18504 18527 SARS-CoV-2_400_59_RIGHT_0 1 - -MN908947.3 18460 18484 SARS-CoV-2_400_60_LEFT_0 2 + -MN908947.3 18835 18860 SARS-CoV-2_400_60_RIGHT_0 2 - -MN908947.3 18789 18815 SARS-CoV-2_400_61_LEFT_0 1 + -MN908947.3 19170 19195 SARS-CoV-2_400_61_RIGHT_0 1 - -MN908947.3 19087 19112 SARS-CoV-2_400_62_LEFT_2 2 + -MN908947.3 19469 19495 SARS-CoV-2_400_62_RIGHT_0 2 - -MN908947.3 19415 19449 SARS-CoV-2_400_63_LEFT_0 1 + -MN908947.3 19770 19796 SARS-CoV-2_400_63_RIGHT_0 1 - -MN908947.3 19721 19750 SARS-CoV-2_400_64_LEFT_0 2 + -MN908947.3 20091 20121 SARS-CoV-2_400_64_RIGHT_0 2 - -MN908947.3 20028 20054 SARS-CoV-2_400_65_LEFT_0 1 + -MN908947.3 20408 20441 SARS-CoV-2_400_65_RIGHT_0 1 - -MN908947.3 20358 20388 SARS-CoV-2_400_66_LEFT_0 2 + -MN908947.3 20729 20758 SARS-CoV-2_400_66_RIGHT_0 2 - -MN908947.3 20650 20676 SARS-CoV-2_400_67_LEFT_1 1 + -MN908947.3 21018 21051 SARS-CoV-2_400_67_RIGHT_1 1 - -MN908947.3 20991 21018 SARS-CoV-2_400_68_LEFT_0 2 + -MN908947.3 21372 21402 SARS-CoV-2_400_68_RIGHT_0 2 - -MN908947.3 21322 21352 SARS-CoV-2_400_69_LEFT_0 1 + -MN908947.3 21696 21722 SARS-CoV-2_400_69_RIGHT_0 1 - -MN908947.3 21579 21607 SARS-CoV-2_400_70_LEFT_0 2 + -MN908947.3 21927 21960 SARS-CoV-2_400_70_RIGHT_0 2 - -MN908947.3 21866 21894 SARS-CoV-2_400_71_LEFT_0 1 + -MN908947.3 22238 22266 SARS-CoV-2_400_71_RIGHT_0 1 - -MN908947.3 22156 22189 SARS-CoV-2_400_72_LEFT_0 2 + -MN908947.3 22517 22547 SARS-CoV-2_400_72_RIGHT_0 2 - -MN908947.3 22466 22494 SARS-CoV-2_400_73_LEFT_0 1 + -MN908947.3 22839 22866 SARS-CoV-2_400_73_RIGHT_0 1 - -MN908947.3 22742 22774 SARS-CoV-2_400_74_LEFT_0 2 + -MN908947.3 23119 23140 SARS-CoV-2_400_74_RIGHT_0 2 - -MN908947.3 23078 23109 SARS-CoV-2_400_75_LEFT_1 1 + -MN908947.3 23452 23478 SARS-CoV-2_400_75_RIGHT_1 1 - -MN908947.3 23229 23258 SARS-CoV-2_400_76_LEFT_0 2 + -MN908947.3 23609 23631 SARS-CoV-2_400_76_RIGHT_0 2 - -MN908947.3 23563 23589 SARS-CoV-2_400_77_LEFT_0 1 + -MN908947.3 23914 23944 SARS-CoV-2_400_77_RIGHT_0 1 - -MN908947.3 23823 23853 SARS-CoV-2_400_78_LEFT_0 2 + -MN908947.3 24209 24231 SARS-CoV-2_400_78_RIGHT_0 2 - -MN908947.3 24160 24189 SARS-CoV-2_400_79_LEFT_0 1 + -MN908947.3 24535 24560 SARS-CoV-2_400_79_RIGHT_0 1 - -MN908947.3 24442 24468 SARS-CoV-2_400_80_LEFT_0 2 + -MN908947.3 24815 24839 SARS-CoV-2_400_80_RIGHT_0 2 - -MN908947.3 24751 24774 SARS-CoV-2_400_81_LEFT_0 1 + -MN908947.3 25120 25151 SARS-CoV-2_400_81_RIGHT_0 1 - -MN908947.3 25053 25082 SARS-CoV-2_400_82_LEFT_0 2 + -MN908947.3 25423 25452 SARS-CoV-2_400_82_RIGHT_0 2 - -MN908947.3 25372 25402 SARS-CoV-2_400_83_LEFT_0 1 + -MN908947.3 25744 25777 SARS-CoV-2_400_83_RIGHT_0 1 - -MN908947.3 25653 25680 SARS-CoV-2_400_84_LEFT_2 2 + -MN908947.3 26048 26072 SARS-CoV-2_400_84_RIGHT_2 2 - -MN908947.3 26011 26039 SARS-CoV-2_400_85_LEFT_0 1 + -MN908947.3 26382 26411 SARS-CoV-2_400_85_RIGHT_0 1 - -MN908947.3 26339 26362 SARS-CoV-2_400_86_LEFT_0 2 + -MN908947.3 26730 26756 SARS-CoV-2_400_86_RIGHT_0 2 - -MN908947.3 26593 26621 SARS-CoV-2_400_87_LEFT_1 1 + -MN908947.3 26989 27009 SARS-CoV-2_400_87_RIGHT_1 1 - -MN908947.3 26958 26981 SARS-CoV-2_400_88_LEFT_2 2 + -MN908947.3 27349 27376 SARS-CoV-2_400_88_RIGHT_2 2 - -MN908947.3 27200 27226 SARS-CoV-2_400_89_LEFT_2 1 + -MN908947.3 27583 27603 SARS-CoV-2_400_89_RIGHT_0 1 - -MN908947.3 27530 27558 SARS-CoV-2_400_90_LEFT_0 2 + -MN908947.3 27927 27950 SARS-CoV-2_400_90_RIGHT_0 2 - -MN908947.3 27832 27860 SARS-CoV-2_400_91_LEFT_0 1 + -MN908947.3 28209 28237 SARS-CoV-2_400_91_RIGHT_0 1 - -MN908947.3 28135 28166 SARS-CoV-2_400_92_LEFT_0 2 + -MN908947.3 28513 28539 SARS-CoV-2_400_92_RIGHT_0 2 - -MN908947.3 28473 28493 SARS-CoV-2_400_93_LEFT_0 1 + -MN908947.3 28849 28873 SARS-CoV-2_400_93_RIGHT_0 1 - -MN908947.3 28808 28829 SARS-CoV-2_400_94_LEFT_0 2 + -MN908947.3 29203 29224 SARS-CoV-2_400_94_RIGHT_0 2 - -MN908947.3 29159 29183 SARS-CoV-2_400_95_LEFT_0 1 + -MN908947.3 29538 29559 SARS-CoV-2_400_95_RIGHT_0 1 - -MN908947.3 29462 29486 SARS-CoV-2_400_96_LEFT_1 2 + -MN908947.3 29840 29873 SARS-CoV-2_400_96_RIGHT_0 2 - diff --git a/sars-cov-2/eden/v1/info.yml b/sars-cov-2/eden/v1/info.yml deleted file mode 100644 index f5e0626..0000000 --- a/sars-cov-2/eden/v1/info.yml +++ /dev/null @@ -1,19 +0,0 @@ -schema_version: 0.9.0 -name: eden-v1 -organism: sars-cov-2 -aliases: -- sydney -developers: -- person_name: John-Sebastian Eden - orcid: 0000-0003-1374-3551 -- person_name: Eby Sim - orcid: 0000-0002-3716-7344 -vendors: [] -amplicon_size: 2500 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/eden/v1 -citations: -- https://www.protocols.io/view/sars-cov-2-genome-sequencing-using-long-pooled-amp-kxygxeob4v8j/v1 -notes: -- Protocol includes addendum for ONT sequencing -primer_checksum: primaschema:9f9c80501b744d15 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/eden/v1/primer.bed b/sars-cov-2/eden/v1/primer.bed deleted file mode 100644 index 521b3ed..0000000 --- a/sars-cov-2/eden/v1/primer.bed +++ /dev/null @@ -1,28 +0,0 @@ -MN908947.3 31 55 SARS2_A1F_31 1 + CCAACCAACTTTCGATCTCTTGTA -MN908947.3 2569 2593 SARS2_A1R_2569 1 - AGCTTCAACAGCTTCACTAGTAGG -MN908947.3 4295 4322 SARS2_A2F_4295 2 + CAGTGCTTAAAAAGTGTAAAAGTGCCT -MN908947.3 6847 6874 SARS2_A2R_6847 2 - AACAGTATTCTTTGCTATAGTAGTCGG -MN908947.3 8596 8620 SARS2_A3F_8596 1 + CTTGTGTTCCTTTTTGTTGCTGCT -MN908947.3 11049 11075 SARS2_A3R_11049 1 - AGAACAAAGACCATTGAGTACTCTGG -MN908947.3 12711 12733 SARS2_A4F_12711 2 + ACGACAGATGTCTTGTGCTGCC -MN908947.3 15225 15247 SARS2_A4R_15225 2 - TTAACATGTTGTGCCAACCACC -MN908947.3 16847 16872 SARS2_A5F_16847 1 + CTATGGTGATGCTGTTGTTTACCGA -MN908947.3 19254 19279 SARS2_A5R_19254 1 - AACCAGGCAAGTTAAGGTTAGATAG -MN908947.3 21358 21387 SARS2_A6F_21358 2 + CAAATCCAATTCAGTTGTCTTCCTATTCT -MN908947.3 23823 23848 SARS2_A6R_23823 2 - TTGTGTACAAAAACTGCCATATTGC -MN908947.3 25602 25624 SARS2_A7F_25602 1 + CTAGCACTCTCCAAGGGTGTTC -MN908947.3 28146 28173 SARS2_A7R_28146 1 - TAGGTTCCTGGCAATTAATTGTAAAAG -MN908947.3 1876 1898 SARS2_B1F_1876 2 + TCAGAGGCTGCTCGTGTTGTAC -MN908947.3 4429 4451 SARS2_B1R_4429 2 - TAGTTTCCACACAGACAGGCAT -MN908947.3 6287 6311 SARS2_B2F_6287 1 + GGTGTATACGTTGTCTTTGGAGCA -MN908947.3 8828 8852 SARS2_B2R_8828 1 - CCACTTCTCTTGTTATGACTGCAG -MN908947.3 10363 10385 SARS2_B3F_10363 2 + GTTCGCATTCAACCAGGACAGA -MN908947.3 12780 12803 SARS2_B3R_12780 2 - ACCTACCTCCCTTTGTTGTGTTG -MN908947.3 14546 14571 SARS2_B4F_14546 1 + GGAATTACTTGTGTATGCTGCTGAC -MN908947.3 17131 17153 SARS2_B4R_17131 1 - TACACTATGCGAGCAGAAGGGT -MN908947.3 18897 18919 SARS2_B5F_18897 2 + GTTAAGCGTGTTGACTGGACTA -MN908947.3 21428 21456 SARS2_B5R_21428 2 - TTGACCTTCTTTTAAAGACATAACAGCA -MN908947.3 23123 23145 SARS2_B6F_23123 1 + CAGCAACTGTTTGTGGACCTAA -MN908947.3 25647 25674 SARS2_B6R_25647 1 - AAGGTGTGAGTAAACTGTTACAAACAA -MN908947.3 27447 27472 SARS2_B7F_27447 2 + CACTACCAAGAGTGTGTTAGAGGTA -MN908947.3 29837 29867 SARS2_B7R_29837 2 - ATTCTCCTAAGAAGCTATTAAAATCACATG diff --git a/sars-cov-2/eden/v1/reference.fasta b/sars-cov-2/eden/v1/reference.fasta deleted file mode 100644 index e1cfd92..0000000 --- a/sars-cov-2/eden/v1/reference.fasta +++ /dev/null @@ -1,429 +0,0 @@ ->MN908947.3 -ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA -CGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAAC -TAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTG -TTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTC -CCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTAC -GTGGCTTTGGAGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATGGCACTTGTGG -CTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAAACGTTCGGAT -GCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACTCGAAGGCATTCAGTACGGTC -GTAGTGGTGAGACACTTGGTGTCCTTGTCCCTCATGTGGGCGAAATACCAGTGGCTTACCGCAAGGTTCT -TCTTCGTAAGAACGGTAATAAAGGAGCTGGTGGCCATAGTTACGGCGCCGATCTAAAGTCATTTGACTTA -GGCGACGAGCTTGGCACTGATCCTTATGAAGATTTTCAAGAAAACTGGAACACTAAACATAGCAGTGGTG -TTACCCGTGAACTCATGCGTGAGCTTAACGGAGGGGCATACACTCGCTATGTCGATAACAACTTCTGTGG -CCCTGATGGCTACCCTCTTGAGTGCATTAAAGACCTTCTAGCACGTGCTGGTAAAGCTTCATGCACTTTG -TCCGAACAACTGGACTTTATTGACACTAAGAGGGGTGTATACTGCTGCCGTGAACATGAGCATGAAATTG -CTTGGTACACGGAACGTTCTGAAAAGAGCTATGAATTGCAGACACCTTTTGAAATTAAATTGGCAAAGAA -ATTTGACACCTTCAATGGGGAATGTCCAAATTTTGTATTTCCCTTAAATTCCATAATCAAGACTATTCAA -CCAAGGGTTGAAAAGAAAAAGCTTGATGGCTTTATGGGTAGAATTCGATCTGTCTATCCAGTTGCGTCAC -CAAATGAATGCAACCAAATGTGCCTTTCAACTCTCATGAAGTGTGATCATTGTGGTGAAACTTCATGGCA -GACGGGCGATTTTGTTAAAGCCACTTGCGAATTTTGTGGCACTGAGAATTTGACTAAAGAAGGTGCCACT -ACTTGTGGTTACTTACCCCAAAATGCTGTTGTTAAAATTTATTGTCCAGCATGTCACAATTCAGAAGTAG -GACCTGAGCATAGTCTTGCCGAATACCATAATGAATCTGGCTTGAAAACCATTCTTCGTAAGGGTGGTCG -CACTATTGCCTTTGGAGGCTGTGTGTTCTCTTATGTTGGTTGCCATAACAAGTGTGCCTATTGGGTTCCA -CGTGCTAGCGCTAACATAGGTTGTAACCATACAGGTGTTGTTGGAGAAGGTTCCGAAGGTCTTAATGACA -ACCTTCTTGAAATACTCCAAAAAGAGAAAGTCAACATCAATATTGTTGGTGACTTTAAACTTAATGAAGA -GATCGCCATTATTTTGGCATCTTTTTCTGCTTCCACAAGTGCTTTTGTGGAAACTGTGAAAGGTTTGGAT -TATAAAGCATTCAAACAAATTGTTGAATCCTGTGGTAATTTTAAAGTTACAAAAGGAAAAGCTAAAAAAG -GTGCCTGGAATATTGGTGAACAGAAATCAATACTGAGTCCTCTTTATGCATTTGCATCAGAGGCTGCTCG -TGTTGTACGATCAATTTTCTCCCGCACTCTTGAAACTGCTCAAAATTCTGTGCGTGTTTTACAGAAGGCC -GCTATAACAATACTAGATGGAATTTCACAGTATTCACTGAGACTCATTGATGCTATGATGTTCACATCTG -ATTTGGCTACTAACAATCTAGTTGTAATGGCCTACATTACAGGTGGTGTTGTTCAGTTGACTTCGCAGTG -GCTAACTAACATCTTTGGCACTGTTTATGAAAAACTCAAACCCGTCCTTGATTGGCTTGAAGAGAAGTTT -AAGGAAGGTGTAGAGTTTCTTAGAGACGGTTGGGAAATTGTTAAATTTATCTCAACCTGTGCTTGTGAAA -TTGTCGGTGGACAAATTGTCACCTGTGCAAAGGAAATTAAGGAGAGTGTTCAGACATTCTTTAAGCTTGT -AAATAAATTTTTGGCTTTGTGTGCTGACTCTATCATTATTGGTGGAGCTAAACTTAAAGCCTTGAATTTA -GGTGAAACATTTGTCACGCACTCAAAGGGATTGTACAGAAAGTGTGTTAAATCCAGAGAAGAAACTGGCC -TACTCATGCCTCTAAAAGCCCCAAAAGAAATTATCTTCTTAGAGGGAGAAACACTTCCCACAGAAGTGTT -AACAGAGGAAGTTGTCTTGAAAACTGGTGATTTACAACCATTAGAACAACCTACTAGTGAAGCTGTTGAA -GCTCCATTGGTTGGTACACCAGTTTGTATTAACGGGCTTATGTTGCTCGAAATCAAAGACACAGAAAAGT -ACTGTGCCCTTGCACCTAATATGATGGTAACAAACAATACCTTCACACTCAAAGGCGGTGCACCAACAAA -GGTTACTTTTGGTGATGACACTGTGATAGAAGTGCAAGGTTACAAGAGTGTGAATATCACTTTTGAACTT -GATGAAAGGATTGATAAAGTACTTAATGAGAAGTGCTCTGCCTATACAGTTGAACTCGGTACAGAAGTAA -ATGAGTTCGCCTGTGTTGTGGCAGATGCTGTCATAAAAACTTTGCAACCAGTATCTGAATTACTTACACC -ACTGGGCATTGATTTAGATGAGTGGAGTATGGCTACATACTACTTATTTGATGAGTCTGGTGAGTTTAAA -TTGGCTTCACATATGTATTGTTCTTTCTACCCTCCAGATGAGGATGAAGAAGAAGGTGATTGTGAAGAAG -AAGAGTTTGAGCCATCAACTCAATATGAGTATGGTACTGAAGATGATTACCAAGGTAAACCTTTGGAATT -TGGTGCCACTTCTGCTGCTCTTCAACCTGAAGAAGAGCAAGAAGAAGATTGGTTAGATGATGATAGTCAA -CAAACTGTTGGTCAACAAGACGGCAGTGAGGACAATCAGACAACTACTATTCAAACAATTGTTGAGGTTC -AACCTCAATTAGAGATGGAACTTACACCAGTTGTTCAGACTATTGAAGTGAATAGTTTTAGTGGTTATTT -AAAACTTACTGACAATGTATACATTAAAAATGCAGACATTGTGGAAGAAGCTAAAAAGGTAAAACCAACA -GTGGTTGTTAATGCAGCCAATGTTTACCTTAAACATGGAGGAGGTGTTGCAGGAGCCTTAAATAAGGCTA -CTAACAATGCCATGCAAGTTGAATCTGATGATTACATAGCTACTAATGGACCACTTAAAGTGGGTGGTAG -TTGTGTTTTAAGCGGACACAATCTTGCTAAACACTGTCTTCATGTTGTCGGCCCAAATGTTAACAAAGGT -GAAGACATTCAACTTCTTAAGAGTGCTTATGAAAATTTTAATCAGCACGAAGTTCTACTTGCACCATTAT -TATCAGCTGGTATTTTTGGTGCTGACCCTATACATTCTTTAAGAGTTTGTGTAGATACTGTTCGCACAAA -TGTCTACTTAGCTGTCTTTGATAAAAATCTCTATGACAAACTTGTTTCAAGCTTTTTGGAAATGAAGAGT -GAAAAGCAAGTTGAACAAAAGATCGCTGAGATTCCTAAAGAGGAAGTTAAGCCATTTATAACTGAAAGTA -AACCTTCAGTTGAACAGAGAAAACAAGATGATAAGAAAATCAAAGCTTGTGTTGAAGAAGTTACAACAAC -TCTGGAAGAAACTAAGTTCCTCACAGAAAACTTGTTACTTTATATTGACATTAATGGCAATCTTCATCCA -GATTCTGCCACTCTTGTTAGTGACATTGACATCACTTTCTTAAAGAAAGATGCTCCATATATAGTGGGTG -ATGTTGTTCAAGAGGGTGTTTTAACTGCTGTGGTTATACCTACTAAAAAGGCTGGTGGCACTACTGAAAT -GCTAGCGAAAGCTTTGAGAAAAGTGCCAACAGACAATTATATAACCACTTACCCGGGTCAGGGTTTAAAT -GGTTACACTGTAGAGGAGGCAAAGACAGTGCTTAAAAAGTGTAAAAGTGCCTTTTACATTCTACCATCTA -TTATCTCTAATGAGAAGCAAGAAATTCTTGGAACTGTTTCTTGGAATTTGCGAGAAATGCTTGCACATGC -AGAAGAAACACGCAAATTAATGCCTGTCTGTGTGGAAACTAAAGCCATAGTTTCAACTATACAGCGTAAA -TATAAGGGTATTAAAATACAAGAGGGTGTGGTTGATTATGGTGCTAGATTTTACTTTTACACCAGTAAAA -CAACTGTAGCGTCACTTATCAACACACTTAACGATCTAAATGAAACTCTTGTTACAATGCCACTTGGCTA -TGTAACACATGGCTTAAATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCCAGCTACAGTT -TCTGTTTCTTCACCTGATGCTGTTACAGCGTATAATGGTTATCTTACTTCTTCTTCTAAAACACCTGAAG -AACATTTTATTGAAACCATCTCACTTGCTGGTTCCTATAAAGATTGGTCCTATTCTGGACAATCTACACA -ACTAGGTATAGAATTTCTTAAGAGAGGTGATAAAAGTGTATATTACACTAGTAATCCTACCACATTCCAC -CTAGATGGTGAAGTTATCACCTTTGACAATCTTAAGACACTTCTTTCTTTGAGAGAAGTGAGGACTATTA -AGGTGTTTACAACAGTAGACAACATTAACCTCCACACGCAAGTTGTGGACATGTCAATGACATATGGACA -ACAGTTTGGTCCAACTTATTTGGATGGAGCTGATGTTACTAAAATAAAACCTCATAATTCACATGAAGGT -AAAACATTTTATGTTTTACCTAATGATGACACTCTACGTGTTGAGGCTTTTGAGTACTACCACACAACTG -ATCCTAGTTTTCTGGGTAGGTACATGTCAGCATTAAATCACACTAAAAAGTGGAAATACCCACAAGTTAA -TGGTTTAACTTCTATTAAATGGGCAGATAACAACTGTTATCTTGCCACTGCATTGTTAACACTCCAACAA -ATAGAGTTGAAGTTTAATCCACCTGCTCTACAAGATGCTTATTACAGAGCAAGGGCTGGTGAAGCTGCTA -ACTTTTGTGCACTTATCTTAGCCTACTGTAATAAGACAGTAGGTGAGTTAGGTGATGTTAGAGAAACAAT -GAGTTACTTGTTTCAACATGCCAATTTAGATTCTTGCAAAAGAGTCTTGAACGTGGTGTGTAAAACTTGT -GGACAACAGCAGACAACCCTTAAGGGTGTAGAAGCTGTTATGTACATGGGCACACTTTCTTATGAACAAT -TTAAGAAAGGTGTTCAGATACCTTGTACGTGTGGTAAACAAGCTACAAAATATCTAGTACAACAGGAGTC -ACCTTTTGTTATGATGTCAGCACCACCTGCTCAGTATGAACTTAAGCATGGTACATTTACTTGTGCTAGT -GAGTACACTGGTAATTACCAGTGTGGTCACTATAAACATATAACTTCTAAAGAAACTTTGTATTGCATAG -ACGGTGCTTTACTTACAAAGTCCTCAGAATACAAAGGTCCTATTACGGATGTTTTCTACAAAGAAAACAG -TTACACAACAACCATAAAACCAGTTACTTATAAATTGGATGGTGTTGTTTGTACAGAAATTGACCCTAAG -TTGGACAATTATTATAAGAAAGACAATTCTTATTTCACAGAGCAACCAATTGATCTTGTACCAAACCAAC -CATATCCAAACGCAAGCTTCGATAATTTTAAGTTTGTATGTGATAATATCAAATTTGCTGATGATTTAAA -CCAGTTAACTGGTTATAAGAAACCTGCTTCAAGAGAGCTTAAAGTTACATTTTTCCCTGACTTAAATGGT -GATGTGGTGGCTATTGATTATAAACACTACACACCCTCTTTTAAGAAAGGAGCTAAATTGTTACATAAAC -CTATTGTTTGGCATGTTAACAATGCAACTAATAAAGCCACGTATAAACCAAATACCTGGTGTATACGTTG -TCTTTGGAGCACAAAACCAGTTGAAACATCAAATTCGTTTGATGTACTGAAGTCAGAGGACGCGCAGGGA -ATGGATAATCTTGCCTGCGAAGATCTAAAACCAGTCTCTGAAGAAGTAGTGGAAAATCCTACCATACAGA -AAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGTAGGAGACATTATACTTAAACCAGCAAATAA -TAGTTTAAAAATTACAGAAGAGGTTGGCCACACAGATCTAATGGCTGCTTATGTAGACAATTCTAGTCTT -ACTATTAAGAAACCTAATGAATTATCTAGAGTATTAGGTTTGAAAACCCTTGCTACTCATGGTTTAGCTG -CTGTTAATAGTGTCCCTTGGGATACTATAGCTAATTATGCTAAGCCTTTTCTTAACAAAGTTGTTAGTAC -AACTACTAACATAGTTACACGGTGTTTAAACCGTGTTTGTACTAATTATATGCCTTATTTCTTTACTTTA -TTGCTACAATTGTGTACTTTTACTAGAAGTACAAATTCTAGAATTAAAGCATCTATGCCGACTACTATAG -CAAAGAATACTGTTAAGAGTGTCGGTAAATTTTGTCTAGAGGCTTCATTTAATTATTTGAAGTCACCTAA -TTTTTCTAAACTGATAAATATTATAATTTGGTTTTTACTATTAAGTGTTTGCCTAGGTTCTTTAATCTAC -TCAACCGCTGCTTTAGGTGTTTTAATGTCTAATTTAGGCATGCCTTCTTACTGTACTGGTTACAGAGAAG -GCTATTTGAACTCTACTAATGTCACTATTGCAACCTACTGTACTGGTTCTATACCTTGTAGTGTTTGTCT -TAGTGGTTTAGATTCTTTAGACACCTATCCTTCTTTAGAAACTATACAAATTACCATTTCATCTTTTAAA -TGGGATTTAACTGCTTTTGGCTTAGTTGCAGAGTGGTTTTTGGCATATATTCTTTTCACTAGGTTTTTCT -ATGTACTTGGATTGGCTGCAATCATGCAATTGTTTTTCAGCTATTTTGCAGTACATTTTATTAGTAATTC -TTGGCTTATGTGGTTAATAATTAATCTTGTACAAATGGCCCCGATTTCAGCTATGGTTAGAATGTACATC -TTCTTTGCATCATTTTATTATGTATGGAAAAGTTATGTGCATGTTGTAGACGGTTGTAATTCATCAACTT -GTATGATGTGTTACAAACGTAATAGAGCAACAAGAGTCGAATGTACAACTATTGTTAATGGTGTTAGAAG -GTCCTTTTATGTCTATGCTAATGGAGGTAAAGGCTTTTGCAAACTACACAATTGGAATTGTGTTAATTGT -GATACATTCTGTGCTGGTAGTACATTTATTAGTGATGAAGTTGCGAGAGACTTGTCACTACAGTTTAAAA -GACCAATAAATCCTACTGACCAGTCTTCTTACATCGTTGATAGTGTTACAGTGAAGAATGGTTCCATCCA -TCTTTACTTTGATAAAGCTGGTCAAAAGACTTATGAAAGACATTCTCTCTCTCATTTTGTTAACTTAGAC -AACCTGAGAGCTAATAACACTAAAGGTTCATTGCCTATTAATGTTATAGTTTTTGATGGTAAATCAAAAT -GTGAAGAATCATCTGCAAAATCAGCGTCTGTTTACTACAGTCAGCTTATGTGTCAACCTATACTGTTACT -AGATCAGGCATTAGTGTCTGATGTTGGTGATAGTGCGGAAGTTGCAGTTAAAATGTTTGATGCTTACGTT -AATACGTTTTCATCAACTTTTAACGTACCAATGGAAAAACTCAAAACACTAGTTGCAACTGCAGAAGCTG -AACTTGCAAAGAATGTGTCCTTAGACAATGTCTTATCTACTTTTATTTCAGCAGCTCGGCAAGGGTTTGT -TGATTCAGATGTAGAAACTAAAGATGTTGTTGAATGTCTTAAATTGTCACATCAATCTGACATAGAAGTT -ACTGGCGATAGTTGTAATAACTATATGCTCACCTATAACAAAGTTGAAAACATGACACCCCGTGACCTTG -GTGCTTGTATTGACTGTAGTGCGCGTCATATTAATGCGCAGGTAGCAAAAAGTCACAACATTGCTTTGAT -ATGGAACGTTAAAGATTTCATGTCATTGTCTGAACAACTACGAAAACAAATACGTAGTGCTGCTAAAAAG -AATAACTTACCTTTTAAGTTGACATGTGCAACTACTAGACAAGTTGTTAATGTTGTAACAACAAAGATAG -CACTTAAGGGTGGTAAAATTGTTAATAATTGGTTGAAGCAGTTAATTAAAGTTACACTTGTGTTCCTTTT -TGTTGCTGCTATTTTCTATTTAATAACACCTGTTCATGTCATGTCTAAACATACTGACTTTTCAAGTGAA -ATCATAGGATACAAGGCTATTGATGGTGGTGTCACTCGTGACATAGCATCTACAGATACTTGTTTTGCTA -ACAAACATGCTGATTTTGACACATGGTTTAGCCAGCGTGGTGGTAGTTATACTAATGACAAAGCTTGCCC -ATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCACGATATTACGC -ACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGTTGGTAACATCTGTTACACAC -CATCAAAACTTATAGAGTACACTGACTTTGCAACATCAGCTTGTGTTTTGGCTGCTGAATGTACAATTTT -TAAAGATGCTTCTGGTAAGCCAGTACCATATTGTTATGATACCAATGTACTAGAAGGTTCTGTTGCTTAT -GAAAGTTTACGCCCTGACACACGTTATGTGCTCATGGATGGCTCTATTATTCAATTTCCTAACACCTACC -TTGAAGGTTCTGTTAGAGTGGTAACAACTTTTGATTCTGAGTACTGTAGGCACGGCACTTGTGAAAGATC -AGAAGCTGGTGTTTGTGTATCTACTAGTGGTAGATGGGTACTTAACAATGATTATTACAGATCTTTACCA -GGAGTTTTCTGTGGTGTAGATGCTGTAAATTTACTTACTAATATGTTTACACCACTAATTCAACCTATTG -GTGCTTTGGACATATCAGCATCTATAGTAGCTGGTGGTATTGTAGCTATCGTAGTAACATGCCTTGCCTA -CTATTTTATGAGGTTTAGAAGAGCTTTTGGTGAATACAGTCATGTAGTTGCCTTTAATACTTTACTATTC -CTTATGTCATTCACTGTACTCTGTTTAACACCAGTTTACTCATTCTTACCTGGTGTTTATTCTGTTATTT -ACTTGTACTTGACATTTTATCTTACTAATGATGTTTCTTTTTTAGCACATATTCAGTGGATGGTTATGTT -CACACCTTTAGTACCTTTCTGGATAACAATTGCTTATATCATTTGTATTTCCACAAAGCATTTCTATTGG -TTCTTTAGTAATTACCTAAAGAGACGTGTAGTCTTTAATGGTGTTTCCTTTAGTACTTTTGAAGAAGCTG -CGCTGTGCACCTTTTTGTTAAATAAAGAAATGTATCTAAAGTTGCGTAGTGATGTGCTATTACCTCTTAC -GCAATATAATAGATACTTAGCTCTTTATAATAAGTACAAGTATTTTAGTGGAGCAATGGATACAACTAGC -TACAGAGAAGCTGCTTGTTGTCATCTCGCAAAGGCTCTCAATGACTTCAGTAACTCAGGTTCTGATGTTC -TTTACCAACCACCACAAACCTCTATCACCTCAGCTGTTTTGCAGAGTGGTTTTAGAAAAATGGCATTCCC -ATCTGGTAAAGTTGAGGGTTGTATGGTACAAGTAACTTGTGGTACAACTACACTTAACGGTCTTTGGCTT -GATGACGTAGTTTACTGTCCAAGACATGTGATCTGCACCTCTGAAGACATGCTTAACCCTAATTATGAAG -ATTTACTCATTCGTAAGTCTAATCATAATTTCTTGGTACAGGCTGGTAATGTTCAACTCAGGGTTATTGG -ACATTCTATGCAAAATTGTGTACTTAAGCTTAAGGTTGATACAGCCAATCCTAAGACACCTAAGTATAAG -TTTGTTCGCATTCAACCAGGACAGACTTTTTCAGTGTTAGCTTGTTACAATGGTTCACCATCTGGTGTTT -ACCAATGTGCTATGAGGCCCAATTTCACTATTAAGGGTTCATTCCTTAATGGTTCATGTGGTAGTGTTGG -TTTTAACATAGATTATGACTGTGTCTCTTTTTGTTACATGCACCATATGGAATTACCAACTGGAGTTCAT -GCTGGCACAGACTTAGAAGGTAACTTTTATGGACCTTTTGTTGACAGGCAAACAGCACAAGCAGCTGGTA -CGGACACAACTATTACAGTTAATGTTTTAGCTTGGTTGTACGCTGCTGTTATAAATGGAGACAGGTGGTT -TCTCAATCGATTTACCACAACTCTTAATGACTTTAACCTTGTGGCTATGAAGTACAATTATGAACCTCTA -ACACAAGACCATGTTGACATACTAGGACCTCTTTCTGCTCAAACTGGAATTGCCGTTTTAGATATGTGTG -CTTCATTAAAAGAATTACTGCAAAATGGTATGAATGGACGTACCATATTGGGTAGTGCTTTATTAGAAGA -TGAATTTACACCTTTTGATGTTGTTAGACAATGCTCAGGTGTTACTTTCCAAAGTGCAGTGAAAAGAACA -ATCAAGGGTACACACCACTGGTTGTTACTCACAATTTTGACTTCACTTTTAGTTTTAGTCCAGAGTACTC -AATGGTCTTTGTTCTTTTTTTTGTATGAAAATGCCTTTTTACCTTTTGCTATGGGTATTATTGCTATGTC -TGCTTTTGCAATGATGTTTGTCAAACATAAGCATGCATTTCTCTGTTTGTTTTTGTTACCTTCTCTTGCC -ACTGTAGCTTATTTTAATATGGTCTATATGCCTGCTAGTTGGGTGATGCGTATTATGACATGGTTGGATA -TGGTTGATACTAGTTTGTCTGGTTTTAAGCTAAAAGACTGTGTTATGTATGCATCAGCTGTAGTGTTACT -AATCCTTATGACAGCAAGAACTGTGTATGATGATGGTGCTAGGAGAGTGTGGACACTTATGAATGTCTTG -ACACTCGTTTATAAAGTTTATTATGGTAATGCTTTAGATCAAGCCATTTCCATGTGGGCTCTTATAATCT -CTGTTACTTCTAACTACTCAGGTGTAGTTACAACTGTCATGTTTTTGGCCAGAGGTATTGTTTTTATGTG -TGTTGAGTATTGCCCTATTTTCTTCATAACTGGTAATACACTTCAGTGTATAATGCTAGTTTATTGTTTC -TTAGGCTATTTTTGTACTTGTTACTTTGGCCTCTTTTGTTTACTCAACCGCTACTTTAGACTGACTCTTG -GTGTTTATGATTACTTAGTTTCTACACAGGAGTTTAGATATATGAATTCACAGGGACTACTCCCACCCAA -GAATAGCATAGATGCCTTCAAACTCAACATTAAATTGTTGGGTGTTGGTGGCAAACCTTGTATCAAAGTA -GCCACTGTACAGTCTAAAATGTCAGATGTAAAGTGCACATCAGTAGTCTTACTCTCAGTTTTGCAACAAC -TCAGAGTAGAATCATCATCTAAATTGTGGGCTCAATGTGTCCAGTTACACAATGACATTCTCTTAGCTAA -AGATACTACTGAAGCCTTTGAAAAAATGGTTTCACTACTTTCTGTTTTGCTTTCCATGCAGGGTGCTGTA -GACATAAACAAGCTTTGTGAAGAAATGCTGGACAACAGGGCAACCTTACAAGCTATAGCCTCAGAGTTTA -GTTCCCTTCCATCATATGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAGCAGGCTGTTGCTAATGGTGA -TTCTGAAGTTGTTCTTAAAAAGTTGAAGAAGTCTTTGAATGTGGCTAAATCTGAATTTGACCGTGATGCA -GCCATGCAACGTAAGTTGGAAAAGATGGCTGATCAAGCTATGACCCAAATGTATAAACAGGCTAGATCTG -AGGACAAGAGGGCAAAAGTTACTAGTGCTATGCAGACAATGCTTTTCACTATGCTTAGAAAGTTGGATAA -TGATGCACTCAACAACATTATCAACAATGCAAGAGATGGTTGTGTTCCCTTGAACATAATACCTCTTACA -ACAGCAGCCAAACTAATGGTTGTCATACCAGACTATAACACATATAAAAATACGTGTGATGGTACAACAT -TTACTTATGCATCAGCATTGTGGGAAATCCAACAGGTTGTAGATGCAGATAGTAAAATTGTTCAACTTAG -TGAAATTAGTATGGACAATTCACCTAATTTAGCATGGCCTCTTATTGTAACAGCTTTAAGGGCCAATTCT -GCTGTCAAATTACAGAATAATGAGCTTAGTCCTGTTGCACTACGACAGATGTCTTGTGCTGCCGGTACTA -CACAAACTGCTTGCACTGATGACAATGCGTTAGCTTACTACAACACAACAAAGGGAGGTAGGTTTGTACT -TGCACTGTTATCCGATTTACAGGATTTGAAATGGGCTAGATTCCCTAAGAGTGATGGAACTGGTACTATC -TATACAGAACTGGAACCACCTTGTAGGTTTGTTACAGACACACCTAAAGGTCCTAAAGTGAAGTATTTAT -ACTTTATTAAAGGATTAAACAACCTAAATAGAGGTATGGTACTTGGTAGTTTAGCTGCCACAGTACGTCT -ACAAGCTGGTAATGCAACAGAAGTGCCTGCCAATTCAACTGTATTATCTTTCTGTGCTTTTGCTGTAGAT -GCTGCTAAAGCTTACAAAGATTATCTAGCTAGTGGGGGACAACCAATCACTAATTGTGTTAAGATGTTGT -GTACACACACTGGTACTGGTCAGGCAATAACAGTTACACCGGAAGCCAATATGGATCAAGAATCCTTTGG -TGGTGCATCGTGTTGTCTGTACTGCCGTTGCCACATAGATCATCCAAATCCTAAAGGATTTTGTGACTTA -AAAGGTAAGTATGTACAAATACCTACAACTTGTGCTAATGACCCTGTGGGTTTTACACTTAAAAACACAG -TCTGTACCGTCTGCGGTATGTGGAAAGGTTATGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCA -GTCAGCTGATGCACAATCGTTTTTAAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCA -CAGGCACTAGTACTGATGTCGTATACAGGGCTTTTGACATCTACAATGATAAAGTAGCTGGTTTTGCTAA -ATTCCTAAAAACTAATTGTTGTCGCTTCCAAGAAAAGGACGAAGATGACAATTTAATTGATTCTTACTTT -GTAGTTAAGAGACACACTTTCTCTAACTACCAACATGAAGAAACAATTTATAATTTACTTAAGGATTGTC -CAGCTGTTGCTAAACATGACTTCTTTAAGTTTAGAATAGACGGTGACATGGTACCACATATATCACGTCA -ACGTCTTACTAAATACACAATGGCAGACCTCGTCTATGCTTTAAGGCATTTTGATGAAGGTAATTGTGAC -ACATTAAAAGAAATACTTGTCACATACAATTGTTGTGATGATGATTATTTCAATAAAAAGGACTGGTATG -ATTTTGTAGAAAACCCAGATATATTACGCGTATACGCCAACTTAGGTGAACGTGTACGCCAAGCTTTGTT -AAAAACAGTACAATTCTGTGATGCCATGCGAAATGCTGGTATTGTTGGTGTACTGACATTAGATAATCAA -GATCTCAATGGTAACTGGTATGATTTCGGTGATTTCATACAAACCACGCCAGGTAGTGGAGTTCCTGTTG -TAGATTCTTATTATTCATTGTTAATGCCTATATTAACCTTGACCAGGGCTTTAACTGCAGAGTCACATGT -TGACACTGACTTAACAAAGCCTTACATTAAGTGGGATTTGTTAAAATATGACTTCACGGAAGAGAGGTTA -AAACTCTTTGACCGTTATTTTAAATATTGGGATCAGACATACCACCCAAATTGTGTTAACTGTTTGGATG -ACAGATGCATTCTGCATTGTGCAAACTTTAATGTTTTATTCTCTACAGTGTTCCCACCTACAAGTTTTGG -ACCACTAGTGAGAAAAATATTTGTTGATGGTGTTCCATTTGTAGTTTCAACTGGATACCACTTCAGAGAG -CTAGGTGTTGTACATAATCAGGATGTAAACTTACATAGCTCTAGACTTAGTTTTAAGGAATTACTTGTGT -ATGCTGCTGACCCTGCTATGCACGCTGCTTCTGGTAATCTATTACTAGATAAACGCACTACGTGCTTTTC -AGTAGCTGCACTTACTAACAATGTTGCTTTTCAAACTGTCAAACCCGGTAATTTTAACAAAGACTTCTAT -GACTTTGCTGTGTCTAAGGGTTTCTTTAAGGAAGGAAGTTCTGTTGAATTAAAACACTTCTTCTTTGCTC -AGGATGGTAATGCTGCTATCAGCGATTATGACTACTATCGTTATAATCTACCAACAATGTGTGATATCAG -ACAACTACTATTTGTAGTTGAAGTTGTTGATAAGTACTTTGATTGTTACGATGGTGGCTGTATTAATGCT -AACCAAGTCATCGTCAACAACCTAGACAAATCAGCTGGTTTTCCATTTAATAAATGGGGTAAGGCTAGAC -TTTATTATGATTCAATGAGTTATGAGGATCAAGATGCACTTTTCGCATATACAAAACGTAATGTCATCCC -TACTATAACTCAAATGAATCTTAAGTATGCCATTAGTGCAAAGAATAGAGCTCGCACCGTAGCTGGTGTC -TCTATCTGTAGTACTATGACCAATAGACAGTTTCATCAAAAATTATTGAAATCAATAGCCGCCACTAGAG -GAGCTACTGTAGTAATTGGAACAAGCAAATTCTATGGTGGTTGGCACAACATGTTAAAAACTGTTTATAG -TGATGTAGAAAACCCTCACCTTATGGGTTGGGATTATCCTAAATGTGATAGAGCCATGCCTAACATGCTT -AGAATTATGGCCTCACTTGTTCTTGCTCGCAAACATACAACGTGTTGTAGCTTGTCACACCGTTTCTATA -GATTAGCTAATGAGTGTGCTCAAGTATTGAGTGAAATGGTCATGTGTGGCGGTTCACTATATGTTAAACC -AGGTGGAACCTCATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTTTTAACATTTGTCAAGCTGTC -ACGGCCAATGTTAATGCACTTTTATCTACTGATGGTAACAAAATTGCCGATAAGTATGTCCGCAATTTAC -AACACAGACTTTATGAGTGTCTCTATAGAAATAGAGATGTTGACACAGACTTTGTGAATGAGTTTTACGC -ATATTTGCGTAAACATTTCTCAATGATGATACTCTCTGACGATGCTGTTGTGTGTTTCAATAGCACTTAT -GCATCTCAAGGTCTAGTGGCTAGCATAAAGAACTTTAAGTCAGTTCTTTATTATCAAAACAATGTTTTTA -TGTCTGAAGCAAAATGTTGGACTGAGACTGACCTTACTAAAGGACCTCATGAATTTTGCTCTCAACATAC -AATGCTAGTTAAACAGGGTGATGATTATGTGTACCTTCCTTACCCAGATCCATCAAGAATCCTAGGGGCC -GGCTGTTTTGTAGATGATATCGTAAAAACAGATGGTACACTTATGATTGAACGGTTCGTGTCTTTAGCTA -TAGATGCTTACCCACTTACTAAACATCCTAATCAGGAGTATGCTGATGTCTTTCATTTGTACTTACAATA -CATAAGAAAGCTACATGATGAGTTAACAGGACACATGTTAGACATGTATTCTGTTATGCTTACTAATGAT -AACACTTCAAGGTATTGGGAACCTGAGTTTTATGAGGCTATGTACACACCGCATACAGTCTTACAGGCTG -TTGGGGCTTGTGTTCTTTGCAATTCACAGACTTCATTAAGATGTGGTGCTTGCATACGTAGACCATTCTT -ATGTTGTAAATGCTGTTACGACCATGTCATATCAACATCACATAAATTAGTCTTGTCTGTTAATCCGTAT -GTTTGCAATGCTCCAGGTTGTGATGTCACAGATGTGACTCAACTTTACTTAGGAGGTATGAGCTATTATT -GTAAATCACATAAACCACCCATTAGTTTTCCATTGTGTGCTAATGGACAAGTTTTTGGTTTATATAAAAA -TACATGTGTTGGTAGCGATAATGTTACTGACTTTAATGCAATTGCAACATGTGACTGGACAAATGCTGGT -GATTACATTTTAGCTAACACCTGTACTGAAAGACTCAAGCTTTTTGCAGCAGAAACGCTCAAAGCTACTG -AGGAGACATTTAAACTGTCTTATGGTATTGCTACTGTACGTGAAGTGCTGTCTGACAGAGAATTACATCT -TTCATGGGAAGTTGGTAAACCTAGACCACCACTTAACCGAAATTATGTCTTTACTGGTTATCGTGTAACT -AAAAACAGTAAAGTACAAATAGGAGAGTACACCTTTGAAAAAGGTGACTATGGTGATGCTGTTGTTTACC -GAGGTACAACAACTTACAAATTAAATGTTGGTGATTATTTTGTGCTGACATCACATACAGTAATGCCATT -AAGTGCACCTACACTAGTGCCACAAGAGCACTATGTTAGAATTACTGGCTTATACCCAACACTCAATATC -TCAGATGAGTTTTCTAGCAATGTTGCAAATTATCAAAAGGTTGGTATGCAAAAGTATTCTACACTCCAGG -GACCACCTGGTACTGGTAAGAGTCATTTTGCTATTGGCCTAGCTCTCTACTACCCTTCTGCTCGCATAGT -GTATACAGCTTGCTCTCATGCCGCTGTTGATGCACTATGTGAGAAGGCATTAAAATATTTGCCTATAGAT -AAATGTAGTAGAATTATACCTGCACGTGCTCGTGTAGAGTGTTTTGATAAATTCAAAGTGAATTCAACAT -TAGAACAGTATGTCTTTTGTACTGTAAATGCATTGCCTGAGACGACAGCAGATATAGTTGTCTTTGATGA -AATTTCAATGGCCACAAATTATGATTTGAGTGTTGTCAATGCCAGATTACGTGCTAAGCACTATGTGTAC -ATTGGCGACCCTGCTCAATTACCTGCACCACGCACATTGCTAACTAAGGGCACACTAGAACCAGAATATT -TCAATTCAGTGTGTAGACTTATGAAAACTATAGGTCCAGACATGTTCCTCGGAACTTGTCGGCGTTGTCC -TGCTGAAATTGTTGACACTGTGAGTGCTTTGGTTTATGATAATAAGCTTAAAGCACATAAAGACAAATCA -GCTCAATGCTTTAAAATGTTTTATAAGGGTGTTATCACGCATGATGTTTCATCTGCAATTAACAGGCCAC -AAATAGGCGTGGTAAGAGAATTCCTTACACGTAACCCTGCTTGGAGAAAAGCTGTCTTTATTTCACCTTA -TAATTCACAGAATGCTGTAGCCTCAAAGATTTTGGGACTACCAACTCAAACTGTTGATTCATCACAGGGC -TCAGAATATGACTATGTCATATTCACTCAAACCACTGAAACAGCTCACTCTTGTAATGTAAACAGATTTA -ATGTTGCTATTACCAGAGCAAAAGTAGGCATACTTTGCATAATGTCTGATAGAGACCTTTATGACAAGTT -GCAATTTACAAGTCTTGAAATTCCACGTAGGAATGTGGCAACTTTACAAGCTGAAAATGTAACAGGACTC -TTTAAAGATTGTAGTAAGGTAATCACTGGGTTACATCCTACACAGGCACCTACACACCTCAGTGTTGACA -CTAAATTCAAAACTGAAGGTTTATGTGTTGACATACCTGGCATACCTAAGGACATGACCTATAGAAGACT -CATCTCTATGATGGGTTTTAAAATGAATTATCAAGTTAATGGTTACCCTAACATGTTTATCACCCGCGAA -GAAGCTATAAGACATGTACGTGCATGGATTGGCTTCGATGTCGAGGGGTGTCATGCTACTAGAGAAGCTG -TTGGTACCAATTTACCTTTACAGCTAGGTTTTTCTACAGGTGTTAACCTAGTTGCTGTACCTACAGGTTA -TGTTGATACACCTAATAATACAGATTTTTCCAGAGTTAGTGCTAAACCACCGCCTGGAGATCAATTTAAA -CACCTCATACCACTTATGTACAAAGGACTTCCTTGGAATGTAGTGCGTATAAAGATTGTACAAATGTTAA -GTGACACACTTAAAAATCTCTCTGACAGAGTCGTATTTGTCTTATGGGCACATGGCTTTGAGTTGACATC -TATGAAGTATTTTGTGAAAATAGGACCTGAGCGCACCTGTTGTCTATGTGATAGACGTGCCACATGCTTT -TCCACTGCTTCAGACACTTATGCCTGTTGGCATCATTCTATTGGATTTGATTACGTCTATAATCCGTTTA -TGATTGATGTTCAACAATGGGGTTTTACAGGTAACCTACAAAGCAACCATGATCTGTATTGTCAAGTCCA -TGGTAATGCACATGTAGCTAGTTGTGATGCAATCATGACTAGGTGTCTAGCTGTCCACGAGTGCTTTGTT -AAGCGTGTTGACTGGACTATTGAATATCCTATAATTGGTGATGAACTGAAGATTAATGCGGCTTGTAGAA -AGGTTCAACACATGGTTGTTAAAGCTGCATTATTAGCAGACAAATTCCCAGTTCTTCACGACATTGGTAA -CCCTAAAGCTATTAAGTGTGTACCTCAAGCTGATGTAGAATGGAAGTTCTATGATGCACAGCCTTGTAGT -GACAAAGCTTATAAAATAGAAGAATTATTCTATTCTTATGCCACACATTCTGACAAATTCACAGATGGTG -TATGCCTATTTTGGAATTGCAATGTCGATAGATATCCTGCTAATTCCATTGTTTGTAGATTTGACACTAG -AGTGCTATCTAACCTTAACTTGCCTGGTTGTGATGGTGGCAGTTTGTATGTAAATAAACATGCATTCCAC -ACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTACTCTGACAGTC -CATGTGAGTCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCACTAAAGTCTGCTACGTGTAT -AACACGTTGCAATTTAGGTGGTGCTGTCTGTAGACATCATGCTAATGAGTACAGATTGTATCTCGATGCT -TATAACATGATGATCTCAGCTGGCTTTAGCTTGTGGGTTTACAAACAATTTGATACTTATAACCTCTGGA -ACACTTTTACAAGACTTCAGAGTTTAGAAAATGTGGCTTTTAATGTTGTAAATAAGGGACACTTTGATGG -ACAACAGGGTGAAGTACCAGTTTCTATCATTAATAACACTGTTTACACAAAAGTTGATGGTGTTGATGTA -GAATTGTTTGAAAATAAAACAACATTACCTGTTAATGTAGCATTTGAGCTTTGGGCTAAGCGCAACATTA -AACCAGTACCAGAGGTGAAAATACTCAATAATTTGGGTGTGGACATTGCTGCTAATACTGTGATCTGGGA -CTACAAAAGAGATGCTCCAGCACATATATCTACTATTGGTGTTTGTTCTATGACTGACATAGCCAAGAAA -CCAACTGAAACGATTTGTGCACCACTCACTGTCTTTTTTGATGGTAGAGTTGATGGTCAAGTAGACTTAT -TTAGAAATGCCCGTAATGGTGTTCTTATTACAGAAGGTAGTGTTAAAGGTTTACAACCATCTGTAGGTCC -CAAACAAGCTAGTCTTAATGGAGTCACATTAATTGGAGAAGCCGTAAAAACACAGTTCAATTATTATAAG -AAAGTTGATGGTGTTGTCCAACAATTACCTGAAACTTACTTTACTCAGAGTAGAAATTTACAAGAATTTA -AACCCAGGAGTCAAATGGAAATTGATTTCTTAGAATTAGCTATGGATGAATTCATTGAACGGTATAAATT -AGAAGGCTATGCCTTCGAACATATCGTTTATGGAGATTTTAGTCATAGTCAGTTAGGTGGTTTACATCTA -CTGATTGGACTAGCTAAACGTTTTAAGGAATCACCTTTTGAATTAGAAGATTTTATTCCTATGGACAGTA -CAGTTAAAAACTATTTCATAACAGATGCGCAAACAGGTTCATCTAAGTGTGTGTGTTCTGTTATTGATTT -ATTACTTGATGATTTTGTTGAAATAATAAAATCCCAAGATTTATCTGTAGTTTCTAAGGTTGTCAAAGTG -ACTATTGACTATACAGAAATTTCATTTATGCTTTGGTGTAAAGATGGCCATGTAGAAACATTTTACCCAA -AATTACAATCTAGTCAAGCGTGGCAACCGGGTGTTGCTATGCCTAATCTTTACAAAATGCAAAGAATGCT -ATTAGAAAAGTGTGACCTTCAAAATTATGGTGATAGTGCAACATTACCTAAAGGCATAATGATGAATGTC -GCAAAATATACTCAACTGTGTCAATATTTAAACACATTAACATTAGCTGTACCCTATAATATGAGAGTTA -TACATTTTGGTGCTGGTTCTGATAAAGGAGTTGCACCAGGTACAGCTGTTTTAAGACAGTGGTTGCCTAC -GGGTACGCTGCTTGTCGATTCAGATCTTAATGACTTTGTCTCTGATGCAGATTCAACTTTGATTGGTGAT -TGTGCAACTGTACATACAGCTAATAAATGGGATCTCATTATTAGTGATATGTACGACCCTAAGACTAAAA -ATGTTACAAAAGAAAATGACTCTAAAGAGGGTTTTTTCACTTACATTTGTGGGTTTATACAACAAAAGCT -AGCTCTTGGAGGTTCCGTGGCTATAAAGATAACAGAACATTCTTGGAATGCTGATCTTTATAAGCTCATG -GGACACTTCGCATGGTGGACAGCCTTTGTTACTAATGTGAATGCGTCATCATCTGAAGCATTTTTAATTG -GATGTAATTATCTTGGCAAACCACGCGAACAAATAGATGGTTATGTCATGCATGCAAATTACATATTTTG -GAGGAATACAAATCCAATTCAGTTGTCTTCCTATTCTTTATTTGACATGAGTAAATTTCCCCTTAAATTA -AGGGGTACTGCTGTTATGTCTTTAAAAGAAGGTCAAATCAATGATATGATTTTATCTCTTCTTAGTAAAG -GTAGACTTATAATTAGAGAAAACAACAGAGTTGTTATTTCTAGTGATGTTCTTGTTAACAACTAAACGAA -CAATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAATCTTACAACCAGAACTCA -ATTACCCCCTGCATACACTAATTCTTTCACACGTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCA -GTTTTACATTCAACTCAGGACTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCATGCTATACATG -TCTCTGGGACCAATGGTACTAAGAGGTTTGATAACCCTGTCCTACCATTTAATGATGGTGTTTATTTTGC -TTCCACTGAGAAGTCTAACATAATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCC -CTACTTATTGTTAATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATTTCAATTTTGTAATGATCCAT -TTTTGGGTGTTTATTACCACAAAAACAACAAAAGTTGGATGGAAAGTGAGTTCAGAGTTTATTCTAGTGC -GAATAATTGCACTTTTGAATATGTCTCTCAGCCTTTTCTTATGGACCTTGAAGGAAAACAGGGTAATTTC -AAAAATCTTAGGGAATTTGTGTTTAAGAATATTGATGGTTATTTTAAAATATATTCTAAGCACACGCCTA -TTAATTTAGTGCGTGATCTCCCTCAGGGTTTTTCGGCTTTAGAACCATTGGTAGATTTGCCAATAGGTAT -TAACATCACTAGGTTTCAAACTTTACTTGCTTTACATAGAAGTTATTTGACTCCTGGTGATTCTTCTTCA -GGTTGGACAGCTGGTGCTGCAGCTTATTATGTGGGTTATCTTCAACCTAGGACTTTTCTATTAAAATATA -ATGAAAATGGAACCATTACAGATGCTGTAGACTGTGCACTTGACCCTCTCTCAGAAACAAAGTGTACGTT -GAAATCCTTCACTGTAGAAAAAGGAATCTATCAAACTTCTAACTTTAGAGTCCAACCAACAGAATCTATT -GTTAGATTTCCTAATATTACAAACTTGTGCCCTTTTGGTGAAGTTTTTAACGCCACCAGATTTGCATCTG -TTTATGCTTGGAACAGGAAGAGAATCAGCAACTGTGTTGCTGATTATTCTGTCCTATATAATTCCGCATC -ATTTTCCACTTTTAAGTGTTATGGAGTGTCTCCTACTAAATTAAATGATCTCTGCTTTACTAATGTCTAT -GCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGGGCAAACTGGAAAGATTGCTG -ATTATAATTATAAATTACCAGATGATTTTACAGGCTGCGTTATAGCTTGGAATTCTAACAATCTTGATTC -TAAGGTTGGTGGTAATTATAATTACCTGTATAGATTGTTTAGGAAGTCTAATCTCAAACCTTTTGAGAGA -GATATTTCAACTGAAATCTATCAGGCCGGTAGCACACCTTGTAATGGTGTTGAAGGTTTTAATTGTTACT -TTCCTTTACAATCATATGGTTTCCAACCCACTAATGGTGTTGGTTACCAACCATACAGAGTAGTAGTACT -TTCTTTTGAACTTCTACATGCACCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTTGGTTAAAAAC -AAATGTGTCAATTTCAACTTCAATGGTTTAACAGGCACAGGTGTTCTTACTGAGTCTAACAAAAAGTTTC -TGCCTTTCCAACAATTTGGCAGAGACATTGCTGACACTACTGATGCTGTCCGTGATCCACAGACACTTGA -GATTCTTGACATTACACCATGTTCTTTTGGTGGTGTCAGTGTTATAACACCAGGAACAAATACTTCTAAC -CAGGTTGCTGTTCTTTATCAGGATGTTAACTGCACAGAAGTCCCTGTTGCTATTCATGCAGATCAACTTA -CTCCTACTTGGCGTGTTTATTCTACAGGTTCTAATGTTTTTCAAACACGTGCAGGCTGTTTAATAGGGGC -TGAACATGTCAACAACTCATATGAGTGTGACATACCCATTGGTGCAGGTATATGCGCTAGTTATCAGACT -CAGACTAATTCTCCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATCATTGCCTACACTATGTCACTTG -GTGCAGAAAATTCAGTTGCTTACTCTAATAACTCTATTGCCATACCCACAAATTTTACTATTAGTGTTAC -CACAGAAATTCTACCAGTGTCTATGACCAAGACATCAGTAGATTGTACAATGTACATTTGTGGTGATTCA -ACTGAATGCAGCAATCTTTTGTTGCAATATGGCAGTTTTTGTACACAATTAAACCGTGCTTTAACTGGAA -TAGCTGTTGAACAAGACAAAAACACCCAAGAAGTTTTTGCACAAGTCAAACAAATTTACAAAACACCACC -AATTAAAGATTTTGGTGGTTTTAATTTTTCACAAATATTACCAGATCCATCAAAACCAAGCAAGAGGTCA -TTTATTGAAGATCTACTTTTCAACAAAGTGACACTTGCAGATGCTGGCTTCATCAAACAATATGGTGATT -GCCTTGGTGATATTGCTGCTAGAGACCTCATTTGTGCACAAAAGTTTAACGGCCTTACTGTTTTGCCACC -TTTGCTCACAGATGAAATGATTGCTCAATACACTTCTGCACTGTTAGCGGGTACAATCACTTCTGGTTGG -ACCTTTGGTGCAGGTGCTGCATTACAAATACCATTTGCTATGCAAATGGCTTATAGGTTTAATGGTATTG -GAGTTACACAGAATGTTCTCTATGAGAACCAAAAATTGATTGCCAACCAATTTAATAGTGCTATTGGCAA -AATTCAAGACTCACTTTCTTCCACAGCAAGTGCACTTGGAAAACTTCAAGATGTGGTCAACCAAAATGCA -CAAGCTTTAAACACGCTTGTTAAACAACTTAGCTCCAATTTTGGTGCAATTTCAAGTGTTTTAAATGATA -TCCTTTCACGTCTTGACAAAGTTGAGGCTGAAGTGCAAATTGATAGGTTGATCACAGGCAGACTTCAAAG -TTTGCAGACATATGTGACTCAACAATTAATTAGAGCTGCAGAAATCAGAGCTTCTGCTAATCTTGCTGCT -ACTAAAATGTCAGAGTGTGTACTTGGACAATCAAAAAGAGTTGATTTTTGTGGAAAGGGCTATCATCTTA -TGTCCTTCCCTCAGTCAGCACCTCATGGTGTAGTCTTCTTGCATGTGACTTATGTCCCTGCACAAGAAAA -GAACTTCACAACTGCTCCTGCCATTTGTCATGATGGAAAAGCACACTTTCCTCGTGAAGGTGTCTTTGTT -TCAAATGGCACACACTGGTTTGTAACACAAAGGAATTTTTATGAACCACAAATCATTACTACAGACAACA -CATTTGTGTCTGGTAACTGTGATGTTGTAATAGGAATTGTCAACAACACAGTTTATGATCCTTTGCAACC -TGAATTAGACTCATTCAAGGAGGAGTTAGATAAATATTTTAAGAATCATACATCACCAGATGTTGATTTA -GGTGACATCTCTGGCATTAATGCTTCAGTTGTAAACATTCAAAAAGAAATTGACCGCCTCAATGAGGTTG -CCAAGAATTTAAATGAATCTCTCATCGATCTCCAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCC -ATGGTACATTTGGCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGCTTTGCTGT -ATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCAAATTTGATGAAGACG -ACTCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACACATAAACGAACTTATGGATTTGTTTATGAGA -ATCTTCACAATTGGAACTGTAACTTTGAAGCAAGGTGAAATCAAGGATGCTACTCCTTCAGATTTTGTTC -GCGCTACTGCAACGATACCGATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCACTTCT -TGCTGTTTTTCAGAGCGCTTCCAAAATCATAACCCTCAAAAAGAGATGGCAACTAGCACTCTCCAAGGGT -GTTCACTTTGTTTGCAACTTGCTGTTGTTGTTTGTAACAGTTTACTCACACCTTTTGCTCGTTGCTGCTG -GCCTTGAAGCCCCTTTTCTCTATCTTTATGCTTTAGTCTACTTCTTGCAGAGTATAAACTTTGTAAGAAT -AATAATGAGGCTTTGGCTTTGCTGGAAATGCCGTTCCAAAAACCCATTACTTTATGATGCCAACTATTTT -CTTTGCTGGCATACTAATTGTTACGACTATTGTATACCTTACAATAGTGTAACTTCTTCAATTGTCATTA -CTTCAGGTGATGGCACAACAAGTCCTATTTCTGAACATGACTACCAGATTGGTGGTTATACTGAAAAATG -GGAATCTGGAGTAAAAGACTGTGTTGTATTACACAGTTACTTCACTTCAGACTATTACCAGCTGTACTCA -ACTCAATTGAGTACAGACACTGGTGTTGAACATGTTACCTTCTTCATCTACAATAAAATTGTTGATGAGC -CTGAAGAACATGTCCAAATTCACACAATCGACGGTTCATCCGGAGTTGTTAATCCAGTAATGGAACCAAT -TTATGATGAACCGACGACGACTACTAGCGTGCCTTTGTAAGCACAAGCTGATGAGTACGAACTTATGTAC -TCATTCGTTTCGGAAGAGACAGGTACGTTAATAGTTAATAGCGTACTTCTTTTTCTTGCTTTCGTGGTAT -TCTTGCTAGTTACACTAGCCATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGT -GAGTCTTGTAAAACCTTCTTTTTACGTTTACTCTCGTGTTAAAAATCTGAATTCTTCTAGAGTTCCTGAT -CTTCTGGTCTAAACGAACTAAATATTATATTAGTTTTTCTGTTTGGAACTTTAATTTTAGCCATGGCAGA -TTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTCCTTGAACAATGGAACCTAGTAATAGGTTTC -CTATTCCTTACATGGATTTGTCTTCTACAATTTGCCTATGCCAACAGGAATAGGTTTTTGTATATAATTA -AGTTAATTTTCCTCTGGCTGTTATGGCCAGTAACTTTAGCTTGTTTTGTGCTTGCTGCTGTTTACAGAAT -AAATTGGATCACCGGTGGAATTGCTATCGCAATGGCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTC -ATTGCTTCTTTCAGACTGTTTGCGCGTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAACATTCTTC -TCAACGTGCCACTCCATGGCACTATTCTGACCAGACCGCTTCTAGAAAGTGAACTCGTAATCGGAGCTGT -GATCCTTCGTGGACATCTTCGTATTGCTGGACACCATCTAGGACGCTGTGACATCAAGGACCTGCCTAAA -GAAATCACTGTTGCTACATCACGAACGCTTTCTTATTACAAATTGGGAGCTTCGCAGCGTGTAGCAGGTG -ACTCAGGTTTTGCTGCATACAGTCGCTACAGGATTGGCAACTATAAATTAAACACAGACCATTCCAGTAG -CAGTGACAATATTGCTTTGCTTGTACAGTAAGTGACAACAGATGTTTCATCTCGTTGACTTTCAGGTTAC -TATAGCAGAGATATTACTAATTATTATGAGGACTTTTAAAGTTTCCATTTGGAATCTTGATTACATCATA -AACCTCATAATTAAAAATTTATCTAAGTCACTAACTGAGAATAAATATTCTCAATTAGATGAAGAGCAAC -CAATGGAGATTGATTAAACGAACATGAAAATTATTCTTTTCTTGGCACTGATAACACTCGCTACTTGTGA -GCTTTATCACTACCAAGAGTGTGTTAGAGGTACAACAGTACTTTTAAAAGAACCTTGCTCTTCTGGAACA -TACGAGGGCAATTCACCATTTCATCCTCTAGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAAT -TTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACT -GTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTT -ATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGATTGAACTTTCATTAATTGACTTCTATTTGTG -CTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTATCTTTTGGTTCTCACTTGAACTGCAA -GATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTG -TAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCC -GTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAA -TTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCT -GTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGA -AGACTTTTTAGAGTATCATGACGTTCGTGTTGTTTTAGATTTCATCTAAACGAACAAACTAAAATGTCTG -ATAATGGACCCCAAAATCAGCGAAATGCACCCCGCATTACGTTTGGTGGACCCTCAGATTCAACTGGCAG -TAACCAGAATGGAGAACGCAGTGGGGCGCGATCAAAACAACGTCGGCCCCAAGGTTTACCCAATAATACT -GCGTCTTGGTTCACCGCTCTCACTCAACATGGCAAGGAAGACCTTAAATTCCCTCGAGGACAAGGCGTTC -CAATTAACACCAATAGCAGTCCAGATGACCAAATTGGCTACTACCGAAGAGCTACCAGACGAATTCGTGG -TGGTGACGGTAAAATGAAAGATCTCAGTCCAAGATGGTATTTCTACTACCTAGGAACTGGGCCAGAAGCT -GGACTTCCCTATGGTGCTAACAAAGACGGCATCATATGGGTTGCAACTGAGGGAGCCTTGAATACACCAA -AAGATCACATTGGCACCCGCAATCCTGCTAACAATGCTGCAATCGTGCTACAACTTCCTCAAGGAACAAC -ATTGCCAAAAGGCTTCTACGCAGAAGGGAGCAGAGGCGGCAGTCAAGCCTCTTCTCGTTCCTCATCACGT -AGTCGCAACAGTTCAAGAAATTCAACTCCAGGCAGCAGTAGGGGAACTTCTCCTGCTAGAATGGCTGGCA -ATGGCGGTGATGCTGCTCTTGCTTTGCTGCTGCTTGACAGATTGAACCAGCTTGAGAGCAAAATGTCTGG -TAAAGGCCAACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCTTCTAAGAAGCCTCGG -CAAAAACGTACTGCCACTAAAGCATACAATGTAACACAAGCTTTCGGCAGACGTGGTCCAGAACAAACCC -AAGGAAATTTTGGGGACCAGGAACTAATCAGACAAGGAACTGATTACAAACATTGGCCGCAAATTGCACA -ATTTGCCCCCAGCGCTTCAGCGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACG -TGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGC -TGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGC -TGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGAT -TTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATG -CAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTT -GTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCT -TTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTAC -GATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAAT -TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAA -AAAAAAAAAAAAA diff --git a/sars-cov-2/eden/v1/scheme.bed b/sars-cov-2/eden/v1/scheme.bed deleted file mode 100644 index 8cb4f62..0000000 --- a/sars-cov-2/eden/v1/scheme.bed +++ /dev/null @@ -1,28 +0,0 @@ -MN908947.3 31 55 SARS2_A1F_31 1 + -MN908947.3 2569 2593 SARS2_A1R_2569 1 - -MN908947.3 4295 4322 SARS2_A2F_4295 2 + -MN908947.3 6847 6874 SARS2_A2R_6847 2 - -MN908947.3 8596 8620 SARS2_A3F_8596 1 + -MN908947.3 11049 11075 SARS2_A3R_11049 1 - -MN908947.3 12711 12733 SARS2_A4F_12711 2 + -MN908947.3 15225 15247 SARS2_A4R_15225 2 - -MN908947.3 16847 16872 SARS2_A5F_16847 1 + -MN908947.3 19254 19279 SARS2_A5R_19254 1 - -MN908947.3 21358 21387 SARS2_A6F_21358 2 + -MN908947.3 23823 23848 SARS2_A6R_23823 2 - -MN908947.3 25602 25624 SARS2_A7F_25602 1 + -MN908947.3 28146 28173 SARS2_A7R_28146 1 - -MN908947.3 1876 1898 SARS2_B1F_1876 2 + -MN908947.3 4429 4451 SARS2_B1R_4429 2 - -MN908947.3 6287 6311 SARS2_B2F_6287 1 + -MN908947.3 8828 8852 SARS2_B2R_8828 1 - -MN908947.3 10363 10385 SARS2_B3F_10363 2 + -MN908947.3 12780 12803 SARS2_B3R_12780 2 - -MN908947.3 14546 14571 SARS2_B4F_14546 1 + -MN908947.3 17131 17153 SARS2_B4R_17131 1 - -MN908947.3 18897 18919 SARS2_B5F_18897 2 + -MN908947.3 21428 21456 SARS2_B5R_21428 2 - -MN908947.3 23123 23145 SARS2_B6F_23123 1 + -MN908947.3 25647 25674 SARS2_B6R_25647 1 - -MN908947.3 27447 27472 SARS2_B7F_27447 2 + -MN908947.3 29837 29867 SARS2_B7R_29837 2 - diff --git a/sars-cov-2/midnight/bccdc-v1/info.yml b/sars-cov-2/midnight/bccdc-v1/info.yml deleted file mode 100644 index 9de2b2a..0000000 --- a/sars-cov-2/midnight/bccdc-v1/info.yml +++ /dev/null @@ -1,18 +0,0 @@ -schema_version: 0.9.0 -name: midnight-bccdc-v1 -organism: sars-cov-2 -derived_from: midnight-v1 -developers: -- person_name: Nikki Freed -- person_name: Olin Silander -- person_name: John Tyson -- person_name: Tracy Lee -amplicon_size: 1200 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/bccdc-v1 -citations: -- https://dx.doi.org/10.17504/protocols.io.bwyppfvn -notes: -- Accomodates P.1 -primer_scheme_status: DEPRECATED -primer_checksum: primaschema:62f2d91308027480 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/midnight/bccdc-v1/primer.bed b/sars-cov-2/midnight/bccdc-v1/primer.bed deleted file mode 100644 index 6e7b1a5..0000000 --- a/sars-cov-2/midnight/bccdc-v1/primer.bed +++ /dev/null @@ -1,61 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + ACCAACCAACTTTCGATCTCTTGT -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - GGTTGCATTCATTTGGTGACGC -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + CCATAATCAAGACTATTCAACCAAGGGT -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - ACAGGTGACAATTTGTCCACCG -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - GATTGTCCTCACTGCCGTCTTG -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + GGAATTTGGTGCCACTTCTGCT -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - CCTGACCCGGGTAAGTGGTTAT -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + ACCTACTAAAAAGGCTGGTGGC -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - AGCATCTTGTAGAGCAGGTGGA -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + ACTTCTATTAAATGGGCAGATAACAACTG -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - GATTATCCATTCCCTGCGCGTC -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + ACCTGGTGTATACGTTGTCTTTGG -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - GCTGAAATCGGGGCCATTTGTA -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - TGACTTTTTGCTACCTGCGCAT -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + AGAAGTTACTGGCGATAGTTGTAATAACT -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - TGCTGATATGTCCAAAGCACCA -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + TTTACCAGGAGTTTTCTGTGGTGT -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - TGGGCCTCATAGCACATTGGTA -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + AGACACCTAAGTATAAGTTTGTTCGCA -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - GCCCACATGGAAATGGCTTGAT -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + ATGGTGCTAGGAGAGTGTGGAC -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - GGATTTCCCACAATGCTGATGC -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + ACCTCTTACAACAGCAGCCAAAC -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - CGTCCTTTTCTTGGAAGCGACA -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + ACAGGCACTAGTACTGATGTCGT -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - GTGCAGCTACTGAAAAGCACGT -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + TTTTAAGGAATTACTTGTGTATGCTGCT -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - ACACACAACAGCATCGTCAGAG -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + ACAACACAGACTTTATGAGTGTCTCT -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - CTCTGTCAGACAGCACTTCACG -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + TCAAGCTTTTTGCAGCAGAAACG -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - CCAAGCAGGGTTACGTGTAAGG -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + GCACATAAAGACAAATCAGCTCAATGC -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - TGTCTGAAGCAGTGGAAAAGCA -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + GGCACATGGCTTTGAGTTGACA -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - CCTGTTGTCCATCAAAGTGTCCC -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + ACAATTTGATACTTATAACCTCTGGAACAC -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - GATTAGGCATAGCAACACCCGG -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - GCAGGGGGTAATTGAGTTCTGG -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_P.1 1 - GCAGAGGGTAATTGAGTTCTGT -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + GTGATGTTCTTGTTAACAACTAAACGAACA -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - AACAGATGCAAATCTGGTGGCG -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + ACTTTAGAGTCCAACCAACAGAATCT -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - TGACTAGCTACACTACGTGCCC -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + GCTGAACATGTCAACAACTCATATGA -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_P.1 2 + GCTGAATATGTCAACAACTCATATGA -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - ATGAGGTGCTGACTGAGGGAAG -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + TGCTGCTACTAAAATGTCAGAGTGT -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_P.1 1 + TGCTGCTATTAAAATGTCAGAGTGT -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - CATTTCCAGCAAAGCCAAAGCC -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + GCCTTGAAGCCCCTTTTCTCTA -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - AATGACCACATGGAACGCGTAC -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + TGGATCACCGGTGGAATTGCTA -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - TGTTCGTTTAGGCGTGACAAGT -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + TTTGTGCTTTTTAGCCTTTCTGCT -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - GTTTGGCCTTGTTGTTGTTGGC -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + TGAGGGAGCCTTGAATACACCA -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/sars-cov-2/midnight/bccdc-v1/scheme.bed b/sars-cov-2/midnight/bccdc-v1/scheme.bed deleted file mode 100644 index 776be94..0000000 --- a/sars-cov-2/midnight/bccdc-v1/scheme.bed +++ /dev/null @@ -1,61 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_P.1 1 - -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_P.1 2 + -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_P.1 1 + -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - diff --git a/sars-cov-2/midnight/bccdc-v2/info.yml b/sars-cov-2/midnight/bccdc-v2/info.yml deleted file mode 100644 index f8e5ba2..0000000 --- a/sars-cov-2/midnight/bccdc-v2/info.yml +++ /dev/null @@ -1,18 +0,0 @@ -schema_version: 0.9.0 -name: midnight-bccdc-v2 -organism: sars-cov-2 -derived_from: midnight-bccdc-v1 -developers: -- person_name: Nikki Freed -- person_name: Olin Silander -- person_name: John Tyson -- person_name: Tracy Lee -amplicon_size: 1200 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/bccdc-v2 -citations: -- https://dx.doi.org/10.17504/protocols.io.bwyppfvn -notes: -- Accomodates BA.1 -primer_scheme_status: DEPRECATED -primer_checksum: primaschema:50191ae0f7a45cf5 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/midnight/bccdc-v2/primer.bed b/sars-cov-2/midnight/bccdc-v2/primer.bed deleted file mode 100644 index 23ee831..0000000 --- a/sars-cov-2/midnight/bccdc-v2/primer.bed +++ /dev/null @@ -1,64 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + ACCAACCAACTTTCGATCTCTTGT -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - GGTTGCATTCATTTGGTGACGC -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + CCATAATCAAGACTATTCAACCAAGGGT -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - ACAGGTGACAATTTGTCCACCG -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - GATTGTCCTCACTGCCGTCTTG -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + GGAATTTGGTGCCACTTCTGCT -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - CCTGACCCGGGTAAGTGGTTAT -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + ACCTACTAAAAAGGCTGGTGGC -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - AGCATCTTGTAGAGCAGGTGGA -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + ACTTCTATTAAATGGGCAGATAACAACTG -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - GATTATCCATTCCCTGCGCGTC -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + ACCTGGTGTATACGTTGTCTTTGG -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - GCTGAAATCGGGGCCATTTGTA -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - TGACTTTTTGCTACCTGCGCAT -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + AGAAGTTACTGGCGATAGTTGTAATAACT -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - TGCTGATATGTCCAAAGCACCA -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + TTTACCAGGAGTTTTCTGTGGTGT -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - TGGGCCTCATAGCACATTGGTA -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + AGACACCTAAGTATAAGTTTGTTCGCA -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - GCCCACATGGAAATGGCTTGAT -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + ATGGTGCTAGGAGAGTGTGGAC -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - GGATTTCCCACAATGCTGATGC -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + ACCTCTTACAACAGCAGCCAAAC -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - CGTCCTTTTCTTGGAAGCGACA -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + ACAGGCACTAGTACTGATGTCGT -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - GTGCAGCTACTGAAAAGCACGT -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + TTTTAAGGAATTACTTGTGTATGCTGCT -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - ACACACAACAGCATCGTCAGAG -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + ACAACACAGACTTTATGAGTGTCTCT -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - CTCTGTCAGACAGCACTTCACG -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + TCAAGCTTTTTGCAGCAGAAACG -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - CCAAGCAGGGTTACGTGTAAGG -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + GCACATAAAGACAAATCAGCTCAATGC -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - TGTCTGAAGCAGTGGAAAAGCA -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + GGCACATGGCTTTGAGTTGACA -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - CCTGTTGTCCATCAAAGTGTCCC -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + ACAATTTGATACTTATAACCTCTGGAACAC -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - GATTAGGCATAGCAACACCCGG -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - GCAGGGGGTAATTGAGTTCTGG -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_P.1 1 - GCAGAGGGTAATTGAGTTCTGT -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + GTGATGTTCTTGTTAACAACTAAACGAACA -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - AACAGATGCAAATCTGGTGGCG -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_Omicron 2 - AACAGATGCAAATTTGGTGGCG -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + ACTTTAGAGTCCAACCAACAGAATCT -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - TGACTAGCTACACTACGTGCCC -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + GCTGAACATGTCAACAACTCATATGA -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_P.1 2 + GCTGAATATGTCAACAACTCATATGA -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - ATGAGGTGCTGACTGAGGGAAG -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + TGCTGCTACTAAAATGTCAGAGTGT -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_P.1 1 + TGCTGCTATTAAAATGTCAGAGTGT -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - CATTTCCAGCAAAGCCAAAGCC -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + GCCTTGAAGCCCCTTTTCTCTA -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - AATGACCACATGGAACGCGTAC -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + TGGATCACCGGTGGAATTGCTA -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - TGTTCGTTTAGGCGTGACAAGT -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + TTTGTGCTTTTTAGCCTTTCTGCT -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_Omicron 2 + TTTGTGCTTTTTAGCCTTTCTGTT -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - GTTTGGCCTTGTTGTTGTTGGC -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + TGAGGGAGCCTTGAATACACCA -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - TAGGCAGCTCTCCCTAGCATTG - diff --git a/sars-cov-2/midnight/bccdc-v2/scheme.bed b/sars-cov-2/midnight/bccdc-v2/scheme.bed deleted file mode 100644 index 6fa3bc4..0000000 --- a/sars-cov-2/midnight/bccdc-v2/scheme.bed +++ /dev/null @@ -1,63 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_P.1 1 - -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_Omicron 2 - -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_P.1 2 + -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_P.1 1 + -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_Omicron 2 + -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - diff --git a/sars-cov-2/midnight/bccdc-v3/info.yml b/sars-cov-2/midnight/bccdc-v3/info.yml deleted file mode 100644 index 14f448a..0000000 --- a/sars-cov-2/midnight/bccdc-v3/info.yml +++ /dev/null @@ -1,16 +0,0 @@ -schema_version: 0.9.0 -name: midnight-bccdc-v3 -organism: sars-cov-2 -derived_from: midnight-bccdc-v2 -developers: -- person_name: Nikki Freed -- person_name: Olin Silander -- person_name: John Tyson -- person_name: Tracy Lee -amplicon_size: 1200 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/bccdc-v3 -citations: -- https://dx.doi.org/10.17504/protocols.io.bwyppfvn -primer_scheme_status: DEPRECATED -primer_checksum: primaschema:3e118ebd83d1a861 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/midnight/bccdc-v3/primer.bed b/sars-cov-2/midnight/bccdc-v3/primer.bed deleted file mode 100644 index 07c7e31..0000000 --- a/sars-cov-2/midnight/bccdc-v3/primer.bed +++ /dev/null @@ -1,65 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + ACCAACCAACTTTCGATCTCTTGT -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - GGTTGCATTCATTTGGTGACGC -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + CCATAATCAAGACTATTCAACCAAGGGT -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - ACAGGTGACAATTTGTCCACCG -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - GATTGTCCTCACTGCCGTCTTG -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + GGAATTTGGTGCCACTTCTGCT -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - CCTGACCCGGGTAAGTGGTTAT -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + ACCTACTAAAAAGGCTGGTGGC -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - AGCATCTTGTAGAGCAGGTGGA -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + ACTTCTATTAAATGGGCAGATAACAACTG -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - GATTATCCATTCCCTGCGCGTC -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + ACCTGGTGTATACGTTGTCTTTGG -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - GCTGAAATCGGGGCCATTTGTA -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - TGACTTTTTGCTACCTGCGCAT -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + AGAAGTTACTGGCGATAGTTGTAATAACT -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - TGCTGATATGTCCAAAGCACCA -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + TTTACCAGGAGTTTTCTGTGGTGT -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - TGGGCCTCATAGCACATTGGTA -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + AGACACCTAAGTATAAGTTTGTTCGCA -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - GCCCACATGGAAATGGCTTGAT -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + ATGGTGCTAGGAGAGTGTGGAC -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - GGATTTCCCACAATGCTGATGC -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + ACCTCTTACAACAGCAGCCAAAC -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - CGTCCTTTTCTTGGAAGCGACA -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + ACAGGCACTAGTACTGATGTCGT -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - GTGCAGCTACTGAAAAGCACGT -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + TTTTAAGGAATTACTTGTGTATGCTGCT -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - ACACACAACAGCATCGTCAGAG -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + ACAACACAGACTTTATGAGTGTCTCT -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - CTCTGTCAGACAGCACTTCACG -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + TCAAGCTTTTTGCAGCAGAAACG -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - CCAAGCAGGGTTACGTGTAAGG -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + GCACATAAAGACAAATCAGCTCAATGC -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - TGTCTGAAGCAGTGGAAAAGCA -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + GGCACATGGCTTTGAGTTGACA -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - CCTGTTGTCCATCAAAGTGTCCC -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + ACAATTTGATACTTATAACCTCTGGAACAC -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - GATTAGGCATAGCAACACCCGG -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - GCAGGGGGTAATTGAGTTCTGG -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_P.1 1 - GCAGaGGGTAATTGAGTTCTGT -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + GTGATGTTCTTGTTAACAACTAAACGAACA -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - AACAGATGCAAATCTGGTGGCG -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_Omicron 2 - AACAGATGCAAATTTGGTGGCG -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + ACTTTAGAGTCCAACCAACAGAATCT -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_Omicron 1 + ACTTTAGAGTTCAACCAACAGAATCT -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - TGACTAGCTACACTACGTGCCC -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + GCTGAACATGTCAACAACTCATATGA -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_P.1 2 + GCTGAATATGTCAACAACTCATATGA -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - ATGAGGTGCTGACTGAGGGAAG -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + TGCTGCTACTAAAATGTCAGAGTGT -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_P.1 1 + TGCTGCTATTAAAATGTCAGAGTGT -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - CATTTCCAGCAAAGCCAAAGCC -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + GCCTTGAAGCCCCTTTTCTCTA -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_Omicron 2 + GCCTTGAAGCCCCTTTTTTCTA -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - AATGACCACATGGAACGCGTAC -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + TGGATCACCGGTGGAATTGCTA -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - TGTTCGTTTAGGCGTGACAAGT -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + TTTGTGCTTTTTAGCCTTTCTGCT -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_Omicron 2 + TTTGTGCTTTTTAGCCTTTCTGTT -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - GTTTGGCCTTGTTGTTGTTGGC -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + TGAGGGAGCCTTGAATACACCA -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/sars-cov-2/midnight/bccdc-v3/scheme.bed b/sars-cov-2/midnight/bccdc-v3/scheme.bed deleted file mode 100644 index b68c3f0..0000000 --- a/sars-cov-2/midnight/bccdc-v3/scheme.bed +++ /dev/null @@ -1,65 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_P.1 1 - -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_Omicron 2 - -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_Omicron 1 + -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_P.1 2 + -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_P.1 1 + -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_Omicron 2 + -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_Omicron 2 + -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - diff --git a/sars-cov-2/midnight/bccdc-v4/info.yml b/sars-cov-2/midnight/bccdc-v4/info.yml deleted file mode 100644 index 20032cf..0000000 --- a/sars-cov-2/midnight/bccdc-v4/info.yml +++ /dev/null @@ -1,24 +0,0 @@ -schema_version: 0.9.0 -name: midnight-bccdc-v4 -aliases: -- midnight-idt-v2 -organism: sars-cov-2 -derived_from: midnight-bccdc-v3 -developers: -- person_name: Nikki Freed -- person_name: Olin Silander -- person_name: John Tyson -- person_name: Tracy Lee -vendors: -- organisation_name: Integrated DNA Technologies - kit_name: '10011644' -amplicon_size: 1200 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/bccdc-v4 -citations: -- https://dx.doi.org/10.17504/protocols.io.bwyppfvn -primer_checksum: primaschema:6ed89a7ed159466d -reference_checksum: primaschema:7d5621cd3b3e498d -notes: -- Accomodates Omicron BA.2 -- IDT calls this the "-Midnight-1200 Amplicon Panel" and "Midnight Amplicon Panel - v2" diff --git a/sars-cov-2/midnight/bccdc-v4/primer.bed b/sars-cov-2/midnight/bccdc-v4/primer.bed deleted file mode 100644 index 8881ea1..0000000 --- a/sars-cov-2/midnight/bccdc-v4/primer.bed +++ /dev/null @@ -1,63 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + ACCAACCAACTTTCGATCTCTTGT -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - GGTTGCATTCATTTGGTGACGC -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + CCATAATCAAGACTATTCAACCAAGGGT -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - ACAGGTGACAATTTGTCCACCG -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - GATTGTCCTCACTGCCGTCTTG -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + GGAATTTGGTGCCACTTCTGCT -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - CCTGACCCGGGTAAGTGGTTAT -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + ACCTACTAAAAAGGCTGGTGGC -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - AGCATCTTGTAGAGCAGGTGGA -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + ACTTCTATTAAATGGGCAGATAACAACTG -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - GATTATCCATTCCCTGCGCGTC -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + ACCTGGTGTATACGTTGTCTTTGG -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - GCTGAAATCGGGGCCATTTGTA -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - TGACTTTTTGCTACCTGCGCAT -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + AGAAGTTACTGGCGATAGTTGTAATAACT -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - TGCTGATATGTCCAAAGCACCA -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + TTTACCAGGAGTTTTCTGTGGTGT -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - TGGGCCTCATAGCACATTGGTA -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + AGACACCTAAGTATAAGTTTGTTCGCA -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - GCCCACATGGAAATGGCTTGAT -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + ATGGTGCTAGGAGAGTGTGGAC -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - GGATTTCCCACAATGCTGATGC -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + ACCTCTTACAACAGCAGCCAAAC -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - CGTCCTTTTCTTGGAAGCGACA -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + ACAGGCACTAGTACTGATGTCGT -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - GTGCAGCTACTGAAAAGCACGT -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + TTTTAAGGAATTACTTGTGTATGCTGCT -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - ACACACAACAGCATCGTCAGAG -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + ACAACACAGACTTTATGAGTGTCTCT -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - CTCTGTCAGACAGCACTTCACG -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + TCAAGCTTTTTGCAGCAGAAACG -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - CCAAGCAGGGTTACGTGTAAGG -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + GCACATAAAGACAAATCAGCTCAATGC -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - TGTCTGAAGCAGTGGAAAAGCA -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + GGCACATGGCTTTGAGTTGACA -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - CCTGTTGTCCATCAAAGTGTCCC -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + ACAATTTGATACTTATAACCTCTGGAACAC -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - GATTAGGCATAGCAACACCCGG -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - GCAGGGGGTAATTGAGTTCTGG -MN908947.3 21675 21700 SARS-CoV-2_21_RIGHT_Omicron 1 - TGAGGATCTGAAAACTTTGTCAGGG -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + GTGATGTTCTTGTTAACAACTAAACGAACA -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - AACAGATGCAAATCTGGTGGCG -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_Omicron 2 - AACAGATGCAAATTTGGTGGCG -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + ACTTTAGAGTCCAACCAACAGAATCT -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_Omicron 1 + ACTTTAGAGTTCAACCAACAGAATCT -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - TGACTAGCTACACTACGTGCCC -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + GCTGAACATGTCAACAACTCATATGA -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - ATGAGGTGCTGACTGAGGGAAG -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + TGCTGCTACTAAAATGTCAGAGTGT -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - CATTTCCAGCAAAGCCAAAGCC -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + GCCTTGAAGCCCCTTTTCTCTA -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_Omicron 2 + GCCTTGAAGCCCCTTTTTTCTA -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - AATGACCACATGGAACGCGTAC -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + TGGATCACCGGTGGAATTGCTA -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - TGTTCGTTTAGGCGTGACAAGT -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + TTTGTGCTTTTTAGCCTTTCTGCT -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_Omicron 2 + TTTGTGCTTTTTAGCCTTTCTGTT -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - GTTTGGCCTTGTTGTTGTTGGC -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + TGAGGGAGCCTTGAATACACCA -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/sars-cov-2/midnight/bccdc-v4/scheme.bed b/sars-cov-2/midnight/bccdc-v4/scheme.bed deleted file mode 100644 index 8a100e4..0000000 --- a/sars-cov-2/midnight/bccdc-v4/scheme.bed +++ /dev/null @@ -1,63 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - -MN908947.3 21675 21700 SARS-CoV-2_21_RIGHT_Omicron 1 - -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_Omicron 2 - -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_Omicron 1 + -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_Omicron 2 + -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_Omicron 2 + -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - diff --git a/sars-cov-2/midnight/ont-v3/info.yml b/sars-cov-2/midnight/ont-v3/info.yml deleted file mode 100644 index b449bee..0000000 --- a/sars-cov-2/midnight/ont-v3/info.yml +++ /dev/null @@ -1,21 +0,0 @@ -schema_version: 0.9.0 -name: midnight-ont-v3 -organism: sars-cov-2 -aliases: -- Midnight-ONT/V3 -derived_from: midnight-v2 -developers: -- person_name: Nikki Freed -- person_name: Olin Silander -- person_name: Oxford Nanopore Technologies -vendors: -- organisation_name: Oxford Nanopore Technologies - kit_name: MRT001.30 -amplicon_size: 1200 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/ont-v3 -citations: -- https://dx.doi.org/10.17504/protocols.io.bwyppfvn -notes: -- Accomodates Omicron BA.2 -primer_checksum: primaschema:2dab57b711f6e6b0 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/midnight/ont-v3/primer.bed b/sars-cov-2/midnight/ont-v3/primer.bed deleted file mode 100644 index 31e63b4..0000000 --- a/sars-cov-2/midnight/ont-v3/primer.bed +++ /dev/null @@ -1,63 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + ACCAACCAACTTTCGATCTCTTGT -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - GGTTGCATTCATTTGGTGACGC -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + CCATAATCAAGACTATTCAACCAAGGGT -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - ACAGGTGACAATTTGTCCACCG -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - GATTGTCCTCACTGCCGTCTTG -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + GGAATTTGGTGCCACTTCTGCT -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - CCTGACCCGGGTAAGTGGTTAT -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + ACCTACTAAAAAGGCTGGTGGC -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - AGCATCTTGTAGAGCAGGTGGA -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + ACTTCTATTAAATGGGCAGATAACAACTG -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - GATTATCCATTCCCTGCGCGTC -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + ACCTGGTGTATACGTTGTCTTTGG -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - GCTGAAATCGGGGCCATTTGTA -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - TGACTTTTTGCTACCTGCGCAT -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + AGAAGTTACTGGCGATAGTTGTAATAACT -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - TGCTGATATGTCCAAAGCACCA -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + TTTACCAGGAGTTTTCTGTGGTGT -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - TGGGCCTCATAGCACATTGGTA -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + AGACACCTAAGTATAAGTTTGTTCGCA -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - GCCCACATGGAAATGGCTTGAT -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + ATGGTGCTAGGAGAGTGTGGAC -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - GGATTTCCCACAATGCTGATGC -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + ACCTCTTACAACAGCAGCCAAAC -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - CGTCCTTTTCTTGGAAGCGACA -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + ACAGGCACTAGTACTGATGTCGT -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - GTGCAGCTACTGAAAAGCACGT -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + TTTTAAGGAATTACTTGTGTATGCTGCT -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - ACACACAACAGCATCGTCAGAG -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + ACAACACAGACTTTATGAGTGTCTCT -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - CTCTGTCAGACAGCACTTCACG -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + TCAAGCTTTTTGCAGCAGAAACG -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - CCAAGCAGGGTTACGTGTAAGG -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + GCACATAAAGACAAATCAGCTCAATGC -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - TGTCTGAAGCAGTGGAAAAGCA -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + GGCACATGGCTTTGAGTTGACA -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - CCTGTTGTCCATCAAAGTGTCCC -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + ACAATTTGATACTTATAACCTCTGGAACAC -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - GATTAGGCATAGCAACACCCGG -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - GCAGGGGGTAATTGAGTTCTGG -MN908947.3 21613 21642 SARS-CoV-2_21_RIGHT_ALT_1 1 - GTGTATGATTGAGTTCTGGTTGTAAG -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + GTGATGTTCTTGTTAACAACTAAACGAACA -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - AACAGATGCAAATCTGGTGGCG -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_ALT_1 2 - AACAGATGCAAATTTGGTGGCG -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + ACTTTAGAGTCCAACCAACAGAATCT -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_ALT_1 1 + ACTTTAGAGTTCAACCAACAGAATCT -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - TGACTAGCTACACTACGTGCCC -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + GCTGAACATGTCAACAACTCATATGA -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_ALT_1 2 + GCTGAATATGTCAACAACTCATATGA -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - ATGAGGTGCTGACTGAGGGAAG -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + TGCTGCTACTAAAATGTCAGAGTGT -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - CATTTCCAGCAAAGCCAAAGCC -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + GCCTTGAAGCCCCTTTTCTCTA -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - AATGACCACATGGAACGCGTAC -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + TGGATCACCGGTGGAATTGCTA -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - TGTTCGTTTAGGCGTGACAAGT -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + TTTGTGCTTTTTAGCCTTTCTGCT -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_27837T 2 + TTTGTGCTTTTTAGCCTTTCTGTT -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - GTTTGGCCTTGTTGTTGTTGGC -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + TGAGGGAGCCTTGAATACACCA -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/sars-cov-2/midnight/ont-v3/scheme.bed b/sars-cov-2/midnight/ont-v3/scheme.bed deleted file mode 100644 index b846c42..0000000 --- a/sars-cov-2/midnight/ont-v3/scheme.bed +++ /dev/null @@ -1,63 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - -MN908947.3 21613 21642 SARS-CoV-2_21_RIGHT_ALT_1 1 - -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_ALT_1 2 - -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_ALT_1 1 + -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_ALT_1 2 + -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_27837T 2 + -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - diff --git a/sars-cov-2/midnight/v1/primer.bed b/sars-cov-2/midnight/v1/primer.bed deleted file mode 100644 index a102da9..0000000 --- a/sars-cov-2/midnight/v1/primer.bed +++ /dev/null @@ -1,58 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + ACCAACCAACTTTCGATCTCTTGT -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - GGTTGCATTCATTTGGTGACGC -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + CCATAATCAAGACTATTCAACCAAGGGT -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - ACAGGTGACAATTTGTCCACCG -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - GATTGTCCTCACTGCCGTCTTG -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + GGAATTTGGTGCCACTTCTGCT -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - CCTGACCCGGGTAAGTGGTTAT -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + ACCTACTAAAAAGGCTGGTGGC -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - AGCATCTTGTAGAGCAGGTGGA -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + ACTTCTATTAAATGGGCAGATAACAACTG -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - GATTATCCATTCCCTGCGCGTC -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + ACCTGGTGTATACGTTGTCTTTGG -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - GCTGAAATCGGGGCCATTTGTA -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - TGACTTTTTGCTACCTGCGCAT -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + AGAAGTTACTGGCGATAGTTGTAATAACT -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - TGCTGATATGTCCAAAGCACCA -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + TTTACCAGGAGTTTTCTGTGGTGT -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - TGGGCCTCATAGCACATTGGTA -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + AGACACCTAAGTATAAGTTTGTTCGCA -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - GCCCACATGGAAATGGCTTGAT -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + ATGGTGCTAGGAGAGTGTGGAC -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - GGATTTCCCACAATGCTGATGC -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + ACCTCTTACAACAGCAGCCAAAC -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - CGTCCTTTTCTTGGAAGCGACA -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + ACAGGCACTAGTACTGATGTCGT -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - GTGCAGCTACTGAAAAGCACGT -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + TTTTAAGGAATTACTTGTGTATGCTGCT -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - ACACACAACAGCATCGTCAGAG -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + ACAACACAGACTTTATGAGTGTCTCT -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - CTCTGTCAGACAGCACTTCACG -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + TCAAGCTTTTTGCAGCAGAAACG -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - CCAAGCAGGGTTACGTGTAAGG -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + GCACATAAAGACAAATCAGCTCAATGC -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - TGTCTGAAGCAGTGGAAAAGCA -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + GGCACATGGCTTTGAGTTGACA -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - CCTGTTGTCCATCAAAGTGTCCC -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + ACAATTTGATACTTATAACCTCTGGAACAC -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - GATTAGGCATAGCAACACCCGG -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - GCAGGGGGTAATTGAGTTCTGG -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + GTGATGTTCTTGTTAACAACTAAACGAACA -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - AACAGATGCAAATCTGGTGGCG -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + ACTTTAGAGTCCAACCAACAGAATCT -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - TGACTAGCTACACTACGTGCCC -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + GCTGAACATGTCAACAACTCATATGA -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - ATGAGGTGCTGACTGAGGGAAG -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + TGCTGCTACTAAAATGTCAGAGTGT -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - CATTTCCAGCAAAGCCAAAGCC -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + GCCTTGAAGCCCCTTTTCTCTA -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - AATGACCACATGGAACGCGTAC -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + TGGATCACCGGTGGAATTGCTA -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - TGTTCGTTTAGGCGTGACAAGT -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + TTTGTGCTTTTTAGCCTTTCTGCT -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - GTTTGGCCTTGTTGTTGTTGGC -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + TGAGGGAGCCTTGAATACACCA -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/sars-cov-2/midnight/v1/scheme.bed b/sars-cov-2/midnight/v1/scheme.bed deleted file mode 100644 index 6cafe12..0000000 --- a/sars-cov-2/midnight/v1/scheme.bed +++ /dev/null @@ -1,58 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - diff --git a/sars-cov-2/midnight/v2/primer.bed b/sars-cov-2/midnight/v2/primer.bed deleted file mode 100644 index f223c84..0000000 --- a/sars-cov-2/midnight/v2/primer.bed +++ /dev/null @@ -1,59 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + ACCAACCAACTTTCGATCTCTTGT -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - GGTTGCATTCATTTGGTGACGC -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + CCATAATCAAGACTATTCAACCAAGGGT -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - ACAGGTGACAATTTGTCCACCG -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - GATTGTCCTCACTGCCGTCTTG -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + GGAATTTGGTGCCACTTCTGCT -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - CCTGACCCGGGTAAGTGGTTAT -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + ACCTACTAAAAAGGCTGGTGGC -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - AGCATCTTGTAGAGCAGGTGGA -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + ACTTCTATTAAATGGGCAGATAACAACTG -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - GATTATCCATTCCCTGCGCGTC -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + ACCTGGTGTATACGTTGTCTTTGG -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - GCTGAAATCGGGGCCATTTGTA -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - TGACTTTTTGCTACCTGCGCAT -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + AGAAGTTACTGGCGATAGTTGTAATAACT -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - TGCTGATATGTCCAAAGCACCA -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + TTTACCAGGAGTTTTCTGTGGTGT -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - TGGGCCTCATAGCACATTGGTA -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + AGACACCTAAGTATAAGTTTGTTCGCA -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - GCCCACATGGAAATGGCTTGAT -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + ATGGTGCTAGGAGAGTGTGGAC -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - GGATTTCCCACAATGCTGATGC -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + ACCTCTTACAACAGCAGCCAAAC -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - CGTCCTTTTCTTGGAAGCGACA -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + ACAGGCACTAGTACTGATGTCGT -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - GTGCAGCTACTGAAAAGCACGT -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + TTTTAAGGAATTACTTGTGTATGCTGCT -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - ACACACAACAGCATCGTCAGAG -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + ACAACACAGACTTTATGAGTGTCTCT -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - CTCTGTCAGACAGCACTTCACG -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + TCAAGCTTTTTGCAGCAGAAACG -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - CCAAGCAGGGTTACGTGTAAGG -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + GCACATAAAGACAAATCAGCTCAATGC -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - TGTCTGAAGCAGTGGAAAAGCA -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + GGCACATGGCTTTGAGTTGACA -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - CCTGTTGTCCATCAAAGTGTCCC -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + ACAATTTGATACTTATAACCTCTGGAACAC -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - GATTAGGCATAGCAACACCCGG -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - GCAGGGGGTAATTGAGTTCTGG -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + GTGATGTTCTTGTTAACAACTAAACGAACA -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - AACAGATGCAAATCTGGTGGCG -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + ACTTTAGAGTCCAACCAACAGAATCT -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - TGACTAGCTACACTACGTGCCC -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + GCTGAACATGTCAACAACTCATATGA -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - ATGAGGTGCTGACTGAGGGAAG -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + TGCTGCTACTAAAATGTCAGAGTGT -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - CATTTCCAGCAAAGCCAAAGCC -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + GCCTTGAAGCCCCTTTTCTCTA -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - AATGACCACATGGAACGCGTAC -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + TGGATCACCGGTGGAATTGCTA -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - TGTTCGTTTAGGCGTGACAAGT -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + TTTGTGCTTTTTAGCCTTTCTGCT -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_27837T 2 + TTTGTGCTTTTTAGCCTTTCTGTT -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - GTTTGGCCTTGTTGTTGTTGGC -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + TGAGGGAGCCTTGAATACACCA -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/sars-cov-2/midnight/v2/scheme.bed b/sars-cov-2/midnight/v2/scheme.bed deleted file mode 100644 index b104d66..0000000 --- a/sars-cov-2/midnight/v2/scheme.bed +++ /dev/null @@ -1,59 +0,0 @@ -MN908947.3 30 54 SARS-CoV-2_1_LEFT 1 + -MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT 1 - -MN908947.3 1100 1128 SARS-CoV-2_2_LEFT 2 + -MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT 2 - -MN908947.3 2153 2179 SARS-CoV-2_3_LEFT 1 + -MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT 1 - -MN908947.3 3144 3166 SARS-CoV-2_4_LEFT 2 + -MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT 2 - -MN908947.3 4167 4189 SARS-CoV-2_5_LEFT 1 + -MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT 1 - -MN908947.3 5257 5286 SARS-CoV-2_6_LEFT 2 + -MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT 2 - -MN908947.3 6283 6307 SARS-CoV-2_7_LEFT 1 + -MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT 1 - -MN908947.3 7298 7328 SARS-CoV-2_8_LEFT 2 + -MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT 2 - -MN908947.3 8253 8282 SARS-CoV-2_9_LEFT 1 + -MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT 1 - -MN908947.3 9303 9327 SARS-CoV-2_10_LEFT 2 + -MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT 2 - -MN908947.3 10343 10370 SARS-CoV-2_11_LEFT 1 + -MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT 1 - -MN908947.3 11372 11394 SARS-CoV-2_12_LEFT 2 + -MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT 2 - -MN908947.3 12450 12473 SARS-CoV-2_13_LEFT 1 + -MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT 1 - -MN908947.3 13509 13532 SARS-CoV-2_14_LEFT 2 + -MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT 2 - -MN908947.3 14540 14568 SARS-CoV-2_15_LEFT 1 + -MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT 1 - -MN908947.3 15608 15634 SARS-CoV-2_16_LEFT 2 + -MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT 2 - -MN908947.3 16624 16647 SARS-CoV-2_17_LEFT 1 + -MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT 1 - -MN908947.3 17622 17649 SARS-CoV-2_18_LEFT 2 + -MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT 2 - -MN908947.3 18596 18618 SARS-CoV-2_19_LEFT 1 + -MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT 1 - -MN908947.3 19574 19604 SARS-CoV-2_20_LEFT 2 + -MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT 2 - -MN908947.3 20553 20581 SARS-CoV-2_21_LEFT 1 + -MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT 1 - -MN908947.3 21532 21562 SARS-CoV-2_22_LEFT 2 + -MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT 2 - -MN908947.3 22511 22537 SARS-CoV-2_23_LEFT 1 + -MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT 1 - -MN908947.3 23518 23544 SARS-CoV-2_24_LEFT 2 + -MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT 2 - -MN908947.3 24633 24658 SARS-CoV-2_25_LEFT 1 + -MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT 1 - -MN908947.3 25690 25712 SARS-CoV-2_26_LEFT 2 + -MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT 2 - -MN908947.3 26744 26766 SARS-CoV-2_27_LEFT 1 + -MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT 1 - -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT 2 + -MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_27837T 2 + -MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT 2 - -MN908947.3 28677 28699 SARS-CoV-2_29_LEFT 1 + -MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT 1 - diff --git a/sars-cov-2/varskip/vsl1a/info.yml b/sars-cov-2/varskip/vsl1a/info.yml deleted file mode 100644 index b060259..0000000 --- a/sars-cov-2/varskip/vsl1a/info.yml +++ /dev/null @@ -1,19 +0,0 @@ -schema_version: 0.9.0 -name: varskip-vsl1a -display_name: VarSkip VSL1A -organism: sars-cov-2 -developers: -- organisation_name: New England BioLabs - home_page: https://neb.com -vendors: -- organisation_name: New England BioLabs - home_page: https://neb.com -amplicon_size: 1200 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/varskip/vsl1a -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -notes: -- Adapted from bed + tsv at https://github.com/nebiolabs/VarSkip with help from Brad - Langhorst -primer_checksum: primaschema:f0d4caf86103e510 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/varskip/vsl1a/primer.bed b/sars-cov-2/varskip/vsl1a/primer.bed deleted file mode 100644 index cf462ad..0000000 --- a/sars-cov-2/varskip/vsl1a/primer.bed +++ /dev/null @@ -1,148 +0,0 @@ -MN908947.3 22 46 varskip-0317-1_01_LEFT 0 + GGTAACAAACCAACCAACTTTCGA -MN908947.3 418 443 varskip-0317-1_02_LEFT 1 + GGCTTAGTAGAAGTTGAAAAAGGCG -MN908947.3 559 581 varskip-0317-1_01_RIGHT 0 - CACCAAGTGTCTCACCACTACG -MN908947.3 841 863 varskip-0317-1_03_LEFT 0 + CCTGATGGCTACCCTCTTGAGT -MN908947.3 976 998 varskip-0317-1_02_RIGHT 1 - AACGTTCCGTGTACCAAGCAAT -MN908947.3 1277 1299 varskip-0317-1_04_LEFT 1 + AAGCCACTTGCGAATTTTGTGG -MN908947.3 1402 1424 varskip-0317-1_03_RIGHT 0 - ATTCGGCAAGACTATGCTCAGG -MN908947.3 1695 1717 varskip-0317-1_05_LEFT 0 + GGCATCTTTTTCTGCTTCCACA -MN908947.3 1821 1844 varskip-0317-1_04_RIGHT 1 - TCTGTTCACCAATATTCCAGGCA -MN908947.3 2061 2086 varskip-0317-1_06_LEFT 1 + CTACATTACAGGTGGTGTTGTTCAG -MN908947.3 2228 2250 varskip-0317-1_05_RIGHT 0 - CCACCGACAATTTCACAAGCAC -MN908947.3 2483 2508 varskip-0317-1_07_LEFT 0 + TCTTCTTAGAGGGAGAAACACTTCC -MN908947.3 2621 2643 varskip-0317-1_06_RIGHT 1 - ATTTCGAGCAACATAAGCCCGT -MN908947.3 2923 2947 varskip-0317-1_08_LEFT 1 + TCTGAATTACTTACACCACTGGGC -MN908947.3 3043 3067 varskip-0317-1_07_RIGHT 0 - ACCTTCTTCTTCATCCTCATCTGG -MN908947.3 3326 3355 varskip-0317-1_09_LEFT 0 + AGACTATTGAAGTGAATAGTTTTAGTGGT -MN908947.3 3470 3492 varskip-0317-1_08_RIGHT 1 - TTTAAGGCTCCTGCAACACCTC -MN908947.3 3753 3778 varskip-0317-1_10_LEFT 1 + AGTTTGTGTAGATACTGTTCGCACA -MN908947.3 3887 3915 varskip-0317-1_09_RIGHT 0 - TCAGTTATAAATGGCTTAACTTCCTCTT -MN908947.3 4154 4180 varskip-0317-1_11_LEFT_alt1 0 + CTGCTGTGGTTATACCTACTAAAAAG -MN908947.3 4296 4322 varskip-0317-1_10_RIGHT 1 - AGGCACTTTTACACTTTTTAAGCACT -MN908947.3 4594 4617 varskip-0317-1_12_LEFT 1 + ACTCTTGTTACAATGCCACTTGG -MN908947.3 4714 4743 varskip-0317-1_11_RIGHT 0 - GAAGAAGTAAGATAACCATTATACGCTGT -MN908947.3 5006 5028 varskip-0317-1_13_LEFT 0 + CGCAAGTTGTGGACATGTCAAT -MN908947.3 5145 5168 varskip-0317-1_12_RIGHT 1 - AGTACTCAAAAGCCTCAACACGT -MN908947.3 5340 5366 varskip-0317-1_14_LEFT 1 + ACCTGCTCTACAAGATGCTTATTACA -MN908947.3 5555 5580 varskip-0317-1_13_RIGHT_alt1 0 - CCCATGTACATAACAGCTTCTACAC -MN908947.3 5794 5817 varskip-0317-1_15_LEFT 0 + ACTTTGTATTGCATAGACGGTGC -MN908947.3 5914 5939 varskip-0317-1_14_RIGHT 1 - TTTCTGTACAAACAACACCATCCAA -MN908947.3 6217 6245 varskip-0317-1_16_LEFT 1 + TTGTTACATAAACCTATTGTTTGGCATG -MN908947.3 6341 6363 varskip-0317-1_15_RIGHT 0 - GCGTCCTCTGACTTCAGTACAT -MN908947.3 6561 6594 varskip-0317-1_17_LEFT 0 + TGTAGACAATTCTAGTCTTACTATTAAGAAACC -MN908947.3 6749 6776 varskip-0317-1_16_RIGHT 1 - AAGGCATATAATTAGTACAAACACGGT -MN908947.3 7000 7022 varskip-0317-1_18_LEFT 1 + TCAACCGCTGCTTTAGGTGTTT -MN908947.3 7124 7151 varskip-0317-1_17_RIGHT_alt1 0 - CTAAACCACTAAGACAAACACTACAAG -MN908947.3 7403 7429 varskip-0317-1_19_LEFT 0 + TGGTTAGAATGTACATCTTCTTTGCA -MN908947.3 7547 7574 varskip-0317-1_18_RIGHT 1 - AGACATAAAAGGACCTTCTAACACCAT -MN908947.3 7836 7861 varskip-0317-1_20_LEFT 1 + AGACAACCTGAGAGCTAATAACACT -MN908947.3 7984 8007 varskip-0317-1_19_RIGHT_alt1 0 - CCAACATCAGACACTAATGCCTG -MN908947.3 8245 8269 varskip-0317-1_21_LEFT 0 + TCTGACATAGAAGTTACTGGCGAT -MN908947.3 8384 8409 varskip-0317-1_20_RIGHT 1 - ACGTTCCATATCAAAGCAATGTTGT -MN908947.3 8685 8709 varskip-0317-1_22_LEFT 1 + AGGATACAAGGCTATTGATGGTGG -MN908947.3 8818 8843 varskip-0317-1_21_RIGHT_alt1 0 - TTGTTATGACTGCAGCAATCAATGG -MN908947.3 9099 9121 varskip-0317-1_23_LEFT 0 + TGAAAGTTTACGCCCTGACACA -MN908947.3 9221 9243 varskip-0317-1_22_RIGHT 1 - TCTGATCTTTCACAAGTGCCGT -MN908947.3 9478 9502 varskip-0317-1_24_LEFT 1 + GGTGAATACAGTCATGTAGTTGCC -MN908947.3 9644 9667 varskip-0317-1_23_RIGHT 0 - AGGTGTGAACATAACCATCCACT -MN908947.3 9842 9865 varskip-0317-1_25_LEFT 0 + TGCGTAGTGATGTGCTATTACCT -MN908947.3 10039 10061 varskip-0317-1_24_RIGHT 1 - AACCACTCTGCAAAACAGCTGA -MN908947.3 10269 10293 varskip-0317-1_26_LEFT 1 + TGTTCAACTCAGGGTTATTGGACA -MN908947.3 10396 10422 varskip-0317-1_25_RIGHT_alt1 0 - GATGGTGAACCATTGTAACAAGCTAA -MN908947.3 10696 10719 varskip-0317-1_27_LEFT 0 + GGAGACAGGTGGTTTCTCAATCG -MN908947.3 10816 10838 varskip-0317-1_26_RIGHT 1 - AAACGGCAATTCCAGTTTGAGC -MN908947.3 11092 11116 varskip-0317-1_28_LEFT 1 + GCCTTTTTACCTTTTGCTATGGGT -MN908947.3 11243 11268 varskip-0317-1_27_RIGHT 0 - TCCAACCATGTCATAATACGCATCA -MN908947.3 11371 11393 varskip-0317-1_29_LEFT 0 + GATGGTGCTAGGAGAGTGTGGA -MN908947.3 11647 11670 varskip-0317-1_28_RIGHT 1 - CGGTTGAGTAAACAAAAGAGGCC -MN908947.3 11824 11851 varskip-0317-1_30_LEFT_alt1 1 + AAAGTAGCCACTGTACAGTCTAAAATG -MN908947.3 11921 11943 varskip-0317-1_29_RIGHT 0 - TGGACACATTGAGCCCACAATT -MN908947.3 12201 12226 varskip-0317-1_31_LEFT 0 + GTTGAAGAAGTCTTTGAATGTGGCT -MN908947.3 12329 12353 varskip-0317-1_30_RIGHT 1 - GCATAGCACTAGTAACTTTTGCCC -MN908947.3 12632 12656 varskip-0317-1_32_LEFT 1 + CATGGCCTCTTATTGTAACAGCTT -MN908947.3 12752 12774 varskip-0317-1_31_RIGHT 0 - GCTAACGCATTGTCATCAGTGC -MN908947.3 13034 13058 varskip-0317-1_33_LEFT_alt1 0 + CAACAGAAGTGCCTGCCAATTCAA -MN908947.3 13166 13188 varskip-0317-1_32_RIGHT 1 - ATTGCCTGACCAGTACCAGTGT -MN908947.3 13479 13501 varskip-0317-1_34_LEFT 1 + GTAAGTGCAGCCCGTCTTACAC -MN908947.3 13599 13621 varskip-0317-1_33_RIGHT 0 - CGTCCTTTTCTTGGAAGCGACA -MN908947.3 13874 13901 varskip-0317-1_35_LEFT 0 + ACTTGTCACATACAATTGTTGTGATGA -MN908947.3 14009 14031 varskip-0317-1_34_RIGHT 1 - TCGCATGGCATCACAGAATTGT -MN908947.3 14290 14319 varskip-0317-1_36_LEFT 1 + ACCGTTATTTTAAATATTGGGATCAGACA -MN908947.3 14417 14444 varskip-0317-1_35_RIGHT 0 - ACAAATATTTTTCTCACTAGTGGTCCA -MN908947.3 14651 14675 varskip-0317-1_37_LEFT 0 + TGTTGCTTTTCAAACTGTCAAACC -MN908947.3 14826 14855 varskip-0317-1_36_RIGHT 1 - ACAAATAGTAGTTGTCTGATATCACACAT -MN908947.3 15064 15091 varskip-0317-1_38_LEFT 1 + TGAATCTTAAGTATGCCATTAGTGCAA -MN908947.3 15191 15217 varskip-0317-1_37_RIGHT 0 - TGCTTGTTCCAATTACTACAGTAGCT -MN908947.3 15428 15450 varskip-0317-1_39_LEFT_alt1 0 + GAGTGAAATGGTCATGTGTGGC -MN908947.3 15598 15622 varskip-0317-1_38_RIGHT 1 - AAAGTCTGTGTTGTAAATTGCGGA -MN908947.3 15862 15887 varskip-0317-1_40_LEFT 1 + GACCTCATGAATTTTGCTCTCAACA -MN908947.3 16007 16029 varskip-0317-1_39_RIGHT 0 - AGCTAAAGACACGAACCGTTCA -MN908947.3 16277 16299 varskip-0317-1_41_LEFT 0 + AAGATGTGGTGCTTGCATACGT -MN908947.3 16416 16443 varskip-0317-1_40_RIGHT 1 - GCTCATACCTCCTAAGTAAAGTTGAGT -MN908947.3 16689 16711 varskip-0317-1_42_LEFT 1 + GCTACTGTACGTGAAGTGCTGT -MN908947.3 16842 16865 varskip-0317-1_41_RIGHT 0 - ACAACAGCATCACCATAGTCACC -MN908947.3 17057 17082 varskip-0317-1_43_LEFT 0 + GCAAAAGTATTCTACACTCCAGGGA -MN908947.3 17246 17266 varskip-0317-1_42_RIGHT 1 - CAAAACAATCTACACGAGCACG -MN908947.3 17476 17500 varskip-0317-1_44_LEFT 1 + AGGGCACACTAGAACCAGAATATT -MN908947.3 17621 17646 varskip-0317-1_43_RIGHT 0 - TTGAGCTGATTTGTCTTTATGTGCT -MN908947.3 17889 17915 varskip-0317-1_45_LEFT 0 + ACAGCTCACTCTTGTAATGTAAACAG -MN908947.3 18033 18059 varskip-0317-1_44_RIGHT 1 - AGTCCTGTTACATTTTCAGCTTGTAA -MN908947.3 18311 18333 varskip-0317-1_46_LEFT 1 + CGAGGGGTGTCATGCTACTAGA -MN908947.3 18441 18463 varskip-0317-1_45_RIGHT 0 - GCGGTGGTTTAGCACTAACTCT -MN908947.3 18712 18737 varskip-0317-1_47_LEFT 0 + CCTGTTGGCATCATTCTATTGGATT -MN908947.3 18852 18876 varskip-0317-1_46_RIGHT 1 - ACACCTAGTCATGATTGCATCACA -MN908947.3 19092 19114 varskip-0317-1_48_LEFT 1 + GATGCACAGCCTTGTAGTGACA -MN908947.3 19247 19273 varskip-0317-1_47_RIGHT_alt1 0 - GCAAGTTAAGGTTAGATAGCACTCTA -MN908947.3 19488 19515 varskip-0317-1_49_LEFT 0 + TGTAGACATCATGCTAATGAGTACAGA -MN908947.3 19641 19669 varskip-0317-1_48_RIGHT 1 - CATCAAAGTGTCCCTTATTTACAACATT -MN908947.3 19885 19911 varskip-0317-1_50_LEFT_alt1 1 + AAAGAGATGCTCCAGCACATATATCT -MN908947.3 20037 20064 varskip-0317-1_49_RIGHT 0 - AACACTACCTTCTGTAATAAGAACACC -MN908947.3 20340 20366 varskip-0317-1_51_LEFT 0 + AGTCATAGTCAGTTAGGTGGTTTACA -MN908947.3 20462 20484 varskip-0317-1_50_RIGHT 1 - AGATGAACCTGTTTGCGCATCT -MN908947.3 20766 20792 varskip-0317-1_52_LEFT 1 + CCTAAAGGCATAATGATGAATGTCGC -MN908947.3 20890 20912 varskip-0317-1_51_RIGHT 0 - AAAACAGCTGTACCTGGTGCAA -MN908947.3 21194 21219 varskip-0317-1_53_LEFT_alt1 0 + TCTTTATAAGCTCATGGGACACTTC -MN908947.3 21314 21338 varskip-0317-1_52_RIGHT 1 - TTTGCATGCATGACATAACCATCT -MN908947.3 21537 21566 varskip-0317-1_54_LEFT 1 + GTTCTTGTTAACAACTAAACGAACAATGT -MN908947.3 21724 21753 varskip-0317-1_53_RIGHT 0 - CAAGTAACATTGGAAAAGAAAGGTAAGAA -MN908947.3 21926 21955 varskip-0317-1_55_LEFT 0 + ACGCTACTAATGTTGTTATTAAAGTCTGT -MN908947.3 22091 22113 varskip-0317-1_54_RIGHT 1 - CCCTGTTTTCCTTCAAGGTCCA -MN908947.3 22347 22373 varskip-0317-1_56_LEFT 1 + TGCAGCTTATTATGTGGGTTATCTTC -MN908947.3 22480 22510 varskip-0317-1_55_RIGHT 0 - AGAAGTTTGATAGATTCCTTTTTCTACAGT -MN908947.3 22749 22776 varskip-0317-1_57_LEFT 0 + TGCAGATTCATTTGTAATTAGAGGTGA -MN908947.3 22879 22907 varskip-0317-1_56_RIGHT 1 - AATTACCACCAACCTTAGAATCAAGATT -MN908947.3 23122 23144 varskip-0317-1_58_LEFT 1 + CCAGCAACTGTTTGTGGACCTA -MN908947.3 23288 23310 varskip-0317-1_57_RIGHT 0 - TCAAGTGTCTGTGGATCACGGA -MN908947.3 23545 23567 varskip-0317-1_59_LEFT 0 + TGTGACATACCCATTGGTGCAG -MN908947.3 23681 23708 varskip-0317-1_58_RIGHT 1 - TGGGTATGGCAATAGAGTTATTAGAGT -MN908947.3 23979 24002 varskip-0317-1_60_LEFT 1 + ACCAGATCCATCAAAACCAAGCA -MN908947.3 24112 24134 varskip-0317-1_59_RIGHT 0 - GGCCGTTAAACTTTTGTGCACA -MN908947.3 24375 24397 varskip-0317-1_61_LEFT 0 + TTCTTCCACAGCAAGTGCACTT -MN908947.3 24518 24541 varskip-0317-1_60_RIGHT 1 - AATTTGCACTTCAGCCTCAACTT -MN908947.3 24789 24811 varskip-0317-1_62_LEFT 1 + AACTGCTCCTGCCATTTGTCAT -MN908947.3 24924 24948 varskip-0317-1_61_RIGHT 0 - ACAACATCACAGTTACCAGACACA -MN908947.3 25171 25200 varskip-0317-1_63_LEFT 0 + GGAAAGTATGAGCAGTATATAAAATGGCC -MN908947.3 25331 25353 varskip-0317-1_62_RIGHT 1 - ACTGGCTCAGAGTCGTCTTCAT -MN908947.3 25575 25600 varskip-0317-1_64_LEFT 1 + ATCATAACCCTCAAAAAGAGATGGC -MN908947.3 25725 25754 varskip-0317-1_63_RIGHT 0 - ACAAAGTTTATACTCTGCAAGAAGTAGAC -MN908947.3 25970 25995 varskip-0317-1_65_LEFT_alt1 0 + GGAATCTGGAGTAAAAGACTGTGTT -MN908947.3 26120 26143 varskip-0317-1_64_RIGHT 1 - CGTCGATTGTGTGAATTTGGACA -MN908947.3 26359 26381 varskip-0317-1_66_LEFT 1 + TGTGTGCGTACTGCTGCAATAT -MN908947.3 26497 26525 varskip-0317-1_65_RIGHT 0 - CATGGCTAAAATTAAAGTTCCAAACAGA -MN908947.3 26706 26728 varskip-0317-1_67_LEFT 0 + TAGCTTGTTTTGTGCTTGCTGC -MN908947.3 26905 26927 varskip-0317-1_66_RIGHT 1 - TTCTAGAAGCGGTCTGGTCAGA -MN908947.3 27081 27103 varskip-0317-1_68_LEFT 1 + TAGCAGGTGACTCAGGTTTTGC -MN908947.3 27256 27283 varskip-0317-1_67_RIGHT 0 - TCCAAATGGAAACTTTAAAAGTCCTCA -MN908947.3 27485 27511 varskip-0317-1_69_LEFT_alt1 0 + AAAAGAACCTTGCTCTTCTGGAACAT -MN908947.3 27647 27671 varskip-0317-1_68_RIGHT 1 - ACTTCCTCTTGTCTGATGAACAGT -MN908947.3 27835 27859 varskip-0317-1_70_LEFT 1 + CTTTTGGTTCTCACTTGAACTGCA -MN908947.3 28051 28076 varskip-0317-1_69_RIGHT 0 - GCACAATTCAATTAAAGGTGCTGAT -MN908947.3 28219 28243 varskip-0317-1_71_LEFT 0 + AGAGTATCATGACGTTCGTGTTGT -MN908947.3 28380 28400 varskip-0317-1_70_RIGHT 1 - GGGGCCGACGTTGTTTTGAT -MN908947.3 28627 28649 varskip-0317-1_72_LEFT 1 + GCTGGACTTCCCTATGGTGCTA -MN908947.3 28783 28805 varskip-0317-1_71_RIGHT 0 - CTCTGCTCCCTTCTGCGTAGAA -MN908947.3 29062 29088 varskip-0317-1_73_LEFT 0 + GCCACTAAAGCATACAATGTAACACA -MN908947.3 29203 29225 varskip-0317-1_72_RIGHT 1 - ACATTCCGAAGAACGCTGAAGC -MN908947.3 29270 29292 varskip-0317-1_74_LEFT 1 + ACACAGGTGCCATCAAATTGGA -MN908947.3 29617 29644 varskip-0317-1_73_RIGHT 0 - TTGTGCTATGTAGTTACGAGAATTCAT -MN908947.3 29799 29831 varskip-0317-1_74_RIGHT 1 - GCACTACTAAAATTAATTTTACACATTAGGGC diff --git a/sars-cov-2/varskip/vsl1a/reference.fasta b/sars-cov-2/varskip/vsl1a/reference.fasta deleted file mode 100644 index 4072957..0000000 --- a/sars-cov-2/varskip/vsl1a/reference.fasta +++ /dev/null @@ -1,500 +0,0 @@ ->MN908947.3 -ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT -GTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACT -CACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC -TTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTT -CGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAAC -ACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGG -AGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATGGCACTTGTGG -CTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAA -ACGTTCGGATGCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACT -CGAAGGCATTCAGTACGGTCGTAGTGGTGAGACACTTGGTGTCCTTGTCCCTCATGTGGG -CGAAATACCAGTGGCTTACCGCAAGGTTCTTCTTCGTAAGAACGGTAATAAAGGAGCTGG -TGGCCATAGTTACGGCGCCGATCTAAAGTCATTTGACTTAGGCGACGAGCTTGGCACTGA -TCCTTATGAAGATTTTCAAGAAAACTGGAACACTAAACATAGCAGTGGTGTTACCCGTGA -ACTCATGCGTGAGCTTAACGGAGGGGCATACACTCGCTATGTCGATAACAACTTCTGTGG -CCCTGATGGCTACCCTCTTGAGTGCATTAAAGACCTTCTAGCACGTGCTGGTAAAGCTTC -ATGCACTTTGTCCGAACAACTGGACTTTATTGACACTAAGAGGGGTGTATACTGCTGCCG -TGAACATGAGCATGAAATTGCTTGGTACACGGAACGTTCTGAAAAGAGCTATGAATTGCA -GACACCTTTTGAAATTAAATTGGCAAAGAAATTTGACACCTTCAATGGGGAATGTCCAAA -TTTTGTATTTCCCTTAAATTCCATAATCAAGACTATTCAACCAAGGGTTGAAAAGAAAAA -GCTTGATGGCTTTATGGGTAGAATTCGATCTGTCTATCCAGTTGCGTCACCAAATGAATG -CAACCAAATGTGCCTTTCAACTCTCATGAAGTGTGATCATTGTGGTGAAACTTCATGGCA -GACGGGCGATTTTGTTAAAGCCACTTGCGAATTTTGTGGCACTGAGAATTTGACTAAAGA -AGGTGCCACTACTTGTGGTTACTTACCCCAAAATGCTGTTGTTAAAATTTATTGTCCAGC -ATGTCACAATTCAGAAGTAGGACCTGAGCATAGTCTTGCCGAATACCATAATGAATCTGG -CTTGAAAACCATTCTTCGTAAGGGTGGTCGCACTATTGCCTTTGGAGGCTGTGTGTTCTC -TTATGTTGGTTGCCATAACAAGTGTGCCTATTGGGTTCCACGTGCTAGCGCTAACATAGG -TTGTAACCATACAGGTGTTGTTGGAGAAGGTTCCGAAGGTCTTAATGACAACCTTCTTGA -AATACTCCAAAAAGAGAAAGTCAACATCAATATTGTTGGTGACTTTAAACTTAATGAAGA -GATCGCCATTATTTTGGCATCTTTTTCTGCTTCCACAAGTGCTTTTGTGGAAACTGTGAA -AGGTTTGGATTATAAAGCATTCAAACAAATTGTTGAATCCTGTGGTAATTTTAAAGTTAC -AAAAGGAAAAGCTAAAAAAGGTGCCTGGAATATTGGTGAACAGAAATCAATACTGAGTCC -TCTTTATGCATTTGCATCAGAGGCTGCTCGTGTTGTACGATCAATTTTCTCCCGCACTCT -TGAAACTGCTCAAAATTCTGTGCGTGTTTTACAGAAGGCCGCTATAACAATACTAGATGG -AATTTCACAGTATTCACTGAGACTCATTGATGCTATGATGTTCACATCTGATTTGGCTAC -TAACAATCTAGTTGTAATGGCCTACATTACAGGTGGTGTTGTTCAGTTGACTTCGCAGTG -GCTAACTAACATCTTTGGCACTGTTTATGAAAAACTCAAACCCGTCCTTGATTGGCTTGA -AGAGAAGTTTAAGGAAGGTGTAGAGTTTCTTAGAGACGGTTGGGAAATTGTTAAATTTAT -CTCAACCTGTGCTTGTGAAATTGTCGGTGGACAAATTGTCACCTGTGCAAAGGAAATTAA -GGAGAGTGTTCAGACATTCTTTAAGCTTGTAAATAAATTTTTGGCTTTGTGTGCTGACTC -TATCATTATTGGTGGAGCTAAACTTAAAGCCTTGAATTTAGGTGAAACATTTGTCACGCA -CTCAAAGGGATTGTACAGAAAGTGTGTTAAATCCAGAGAAGAAACTGGCCTACTCATGCC -TCTAAAAGCCCCAAAAGAAATTATCTTCTTAGAGGGAGAAACACTTCCCACAGAAGTGTT -AACAGAGGAAGTTGTCTTGAAAACTGGTGATTTACAACCATTAGAACAACCTACTAGTGA -AGCTGTTGAAGCTCCATTGGTTGGTACACCAGTTTGTATTAACGGGCTTATGTTGCTCGA -AATCAAAGACACAGAAAAGTACTGTGCCCTTGCACCTAATATGATGGTAACAAACAATAC -CTTCACACTCAAAGGCGGTGCACCAACAAAGGTTACTTTTGGTGATGACACTGTGATAGA -AGTGCAAGGTTACAAGAGTGTGAATATCACTTTTGAACTTGATGAAAGGATTGATAAAGT -ACTTAATGAGAAGTGCTCTGCCTATACAGTTGAACTCGGTACAGAAGTAAATGAGTTCGC -CTGTGTTGTGGCAGATGCTGTCATAAAAACTTTGCAACCAGTATCTGAATTACTTACACC -ACTGGGCATTGATTTAGATGAGTGGAGTATGGCTACATACTACTTATTTGATGAGTCTGG -TGAGTTTAAATTGGCTTCACATATGTATTGTTCTTTCTACCCTCCAGATGAGGATGAAGA -AGAAGGTGATTGTGAAGAAGAAGAGTTTGAGCCATCAACTCAATATGAGTATGGTACTGA -AGATGATTACCAAGGTAAACCTTTGGAATTTGGTGCCACTTCTGCTGCTCTTCAACCTGA -AGAAGAGCAAGAAGAAGATTGGTTAGATGATGATAGTCAACAAACTGTTGGTCAACAAGA -CGGCAGTGAGGACAATCAGACAACTACTATTCAAACAATTGTTGAGGTTCAACCTCAATT -AGAGATGGAACTTACACCAGTTGTTCAGACTATTGAAGTGAATAGTTTTAGTGGTTATTT -AAAACTTACTGACAATGTATACATTAAAAATGCAGACATTGTGGAAGAAGCTAAAAAGGT -AAAACCAACAGTGGTTGTTAATGCAGCCAATGTTTACCTTAAACATGGAGGAGGTGTTGC -AGGAGCCTTAAATAAGGCTACTAACAATGCCATGCAAGTTGAATCTGATGATTACATAGC -TACTAATGGACCACTTAAAGTGGGTGGTAGTTGTGTTTTAAGCGGACACAATCTTGCTAA -ACACTGTCTTCATGTTGTCGGCCCAAATGTTAACAAAGGTGAAGACATTCAACTTCTTAA -GAGTGCTTATGAAAATTTTAATCAGCACGAAGTTCTACTTGCACCATTATTATCAGCTGG -TATTTTTGGTGCTGACCCTATACATTCTTTAAGAGTTTGTGTAGATACTGTTCGCACAAA -TGTCTACTTAGCTGTCTTTGATAAAAATCTCTATGACAAACTTGTTTCAAGCTTTTTGGA -AATGAAGAGTGAAAAGCAAGTTGAACAAAAGATCGCTGAGATTCCTAAAGAGGAAGTTAA -GCCATTTATAACTGAAAGTAAACCTTCAGTTGAACAGAGAAAACAAGATGATAAGAAAAT -CAAAGCTTGTGTTGAAGAAGTTACAACAACTCTGGAAGAAACTAAGTTCCTCACAGAAAA -CTTGTTACTTTATATTGACATTAATGGCAATCTTCATCCAGATTCTGCCACTCTTGTTAG -TGACATTGACATCACTTTCTTAAAGAAAGATGCTCCATATATAGTGGGTGATGTTGTTCA -AGAGGGTGTTTTAACTGCTGTGGTTATACCTACTAAAAAGGCTGGTGGCACTACTGAAAT -GCTAGCGAAAGCTTTGAGAAAAGTGCCAACAGACAATTATATAACCACTTACCCGGGTCA -GGGTTTAAATGGTTACACTGTAGAGGAGGCAAAGACAGTGCTTAAAAAGTGTAAAAGTGC -CTTTTACATTCTACCATCTATTATCTCTAATGAGAAGCAAGAAATTCTTGGAACTGTTTC -TTGGAATTTGCGAGAAATGCTTGCACATGCAGAAGAAACACGCAAATTAATGCCTGTCTG -TGTGGAAACTAAAGCCATAGTTTCAACTATACAGCGTAAATATAAGGGTATTAAAATACA -AGAGGGTGTGGTTGATTATGGTGCTAGATTTTACTTTTACACCAGTAAAACAACTGTAGC -GTCACTTATCAACACACTTAACGATCTAAATGAAACTCTTGTTACAATGCCACTTGGCTA -TGTAACACATGGCTTAAATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCC -AGCTACAGTTTCTGTTTCTTCACCTGATGCTGTTACAGCGTATAATGGTTATCTTACTTC -TTCTTCTAAAACACCTGAAGAACATTTTATTGAAACCATCTCACTTGCTGGTTCCTATAA -AGATTGGTCCTATTCTGGACAATCTACACAACTAGGTATAGAATTTCTTAAGAGAGGTGA -TAAAAGTGTATATTACACTAGTAATCCTACCACATTCCACCTAGATGGTGAAGTTATCAC -CTTTGACAATCTTAAGACACTTCTTTCTTTGAGAGAAGTGAGGACTATTAAGGTGTTTAC -AACAGTAGACAACATTAACCTCCACACGCAAGTTGTGGACATGTCAATGACATATGGACA -ACAGTTTGGTCCAACTTATTTGGATGGAGCTGATGTTACTAAAATAAAACCTCATAATTC -ACATGAAGGTAAAACATTTTATGTTTTACCTAATGATGACACTCTACGTGTTGAGGCTTT -TGAGTACTACCACACAACTGATCCTAGTTTTCTGGGTAGGTACATGTCAGCATTAAATCA -CACTAAAAAGTGGAAATACCCACAAGTTAATGGTTTAACTTCTATTAAATGGGCAGATAA -CAACTGTTATCTTGCCACTGCATTGTTAACACTCCAACAAATAGAGTTGAAGTTTAATCC -ACCTGCTCTACAAGATGCTTATTACAGAGCAAGGGCTGGTGAAGCTGCTAACTTTTGTGC -ACTTATCTTAGCCTACTGTAATAAGACAGTAGGTGAGTTAGGTGATGTTAGAGAAACAAT -GAGTTACTTGTTTCAACATGCCAATTTAGATTCTTGCAAAAGAGTCTTGAACGTGGTGTG -TAAAACTTGTGGACAACAGCAGACAACCCTTAAGGGTGTAGAAGCTGTTATGTACATGGG -CACACTTTCTTATGAACAATTTAAGAAAGGTGTTCAGATACCTTGTACGTGTGGTAAACA -AGCTACAAAATATCTAGTACAACAGGAGTCACCTTTTGTTATGATGTCAGCACCACCTGC -TCAGTATGAACTTAAGCATGGTACATTTACTTGTGCTAGTGAGTACACTGGTAATTACCA -GTGTGGTCACTATAAACATATAACTTCTAAAGAAACTTTGTATTGCATAGACGGTGCTTT -ACTTACAAAGTCCTCAGAATACAAAGGTCCTATTACGGATGTTTTCTACAAAGAAAACAG -TTACACAACAACCATAAAACCAGTTACTTATAAATTGGATGGTGTTGTTTGTACAGAAAT -TGACCCTAAGTTGGACAATTATTATAAGAAAGACAATTCTTATTTCACAGAGCAACCAAT -TGATCTTGTACCAAACCAACCATATCCAAACGCAAGCTTCGATAATTTTAAGTTTGTATG -TGATAATATCAAATTTGCTGATGATTTAAACCAGTTAACTGGTTATAAGAAACCTGCTTC -AAGAGAGCTTAAAGTTACATTTTTCCCTGACTTAAATGGTGATGTGGTGGCTATTGATTA -TAAACACTACACACCCTCTTTTAAGAAAGGAGCTAAATTGTTACATAAACCTATTGTTTG -GCATGTTAACAATGCAACTAATAAAGCCACGTATAAACCAAATACCTGGTGTATACGTTG -TCTTTGGAGCACAAAACCAGTTGAAACATCAAATTCGTTTGATGTACTGAAGTCAGAGGA -CGCGCAGGGAATGGATAATCTTGCCTGCGAAGATCTAAAACCAGTCTCTGAAGAAGTAGT -GGAAAATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGT -AGGAGACATTATACTTAAACCAGCAAATAATAGTTTAAAAATTACAGAAGAGGTTGGCCA -CACAGATCTAATGGCTGCTTATGTAGACAATTCTAGTCTTACTATTAAGAAACCTAATGA -ATTATCTAGAGTATTAGGTTTGAAAACCCTTGCTACTCATGGTTTAGCTGCTGTTAATAG -TGTCCCTTGGGATACTATAGCTAATTATGCTAAGCCTTTTCTTAACAAAGTTGTTAGTAC -AACTACTAACATAGTTACACGGTGTTTAAACCGTGTTTGTACTAATTATATGCCTTATTT -CTTTACTTTATTGCTACAATTGTGTACTTTTACTAGAAGTACAAATTCTAGAATTAAAGC -ATCTATGCCGACTACTATAGCAAAGAATACTGTTAAGAGTGTCGGTAAATTTTGTCTAGA -GGCTTCATTTAATTATTTGAAGTCACCTAATTTTTCTAAACTGATAAATATTATAATTTG -GTTTTTACTATTAAGTGTTTGCCTAGGTTCTTTAATCTACTCAACCGCTGCTTTAGGTGT -TTTAATGTCTAATTTAGGCATGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAA -CTCTACTAATGTCACTATTGCAACCTACTGTACTGGTTCTATACCTTGTAGTGTTTGTCT -TAGTGGTTTAGATTCTTTAGACACCTATCCTTCTTTAGAAACTATACAAATTACCATTTC -ATCTTTTAAATGGGATTTAACTGCTTTTGGCTTAGTTGCAGAGTGGTTTTTGGCATATAT -TCTTTTCACTAGGTTTTTCTATGTACTTGGATTGGCTGCAATCATGCAATTGTTTTTCAG -CTATTTTGCAGTACATTTTATTAGTAATTCTTGGCTTATGTGGTTAATAATTAATCTTGT -ACAAATGGCCCCGATTTCAGCTATGGTTAGAATGTACATCTTCTTTGCATCATTTTATTA -TGTATGGAAAAGTTATGTGCATGTTGTAGACGGTTGTAATTCATCAACTTGTATGATGTG -TTACAAACGTAATAGAGCAACAAGAGTCGAATGTACAACTATTGTTAATGGTGTTAGAAG -GTCCTTTTATGTCTATGCTAATGGAGGTAAAGGCTTTTGCAAACTACACAATTGGAATTG -TGTTAATTGTGATACATTCTGTGCTGGTAGTACATTTATTAGTGATGAAGTTGCGAGAGA -CTTGTCACTACAGTTTAAAAGACCAATAAATCCTACTGACCAGTCTTCTTACATCGTTGA -TAGTGTTACAGTGAAGAATGGTTCCATCCATCTTTACTTTGATAAAGCTGGTCAAAAGAC -TTATGAAAGACATTCTCTCTCTCATTTTGTTAACTTAGACAACCTGAGAGCTAATAACAC -TAAAGGTTCATTGCCTATTAATGTTATAGTTTTTGATGGTAAATCAAAATGTGAAGAATC -ATCTGCAAAATCAGCGTCTGTTTACTACAGTCAGCTTATGTGTCAACCTATACTGTTACT -AGATCAGGCATTAGTGTCTGATGTTGGTGATAGTGCGGAAGTTGCAGTTAAAATGTTTGA -TGCTTACGTTAATACGTTTTCATCAACTTTTAACGTACCAATGGAAAAACTCAAAACACT -AGTTGCAACTGCAGAAGCTGAACTTGCAAAGAATGTGTCCTTAGACAATGTCTTATCTAC -TTTTATTTCAGCAGCTCGGCAAGGGTTTGTTGATTCAGATGTAGAAACTAAAGATGTTGT -TGAATGTCTTAAATTGTCACATCAATCTGACATAGAAGTTACTGGCGATAGTTGTAATAA -CTATATGCTCACCTATAACAAAGTTGAAAACATGACACCCCGTGACCTTGGTGCTTGTAT -TGACTGTAGTGCGCGTCATATTAATGCGCAGGTAGCAAAAAGTCACAACATTGCTTTGAT -ATGGAACGTTAAAGATTTCATGTCATTGTCTGAACAACTACGAAAACAAATACGTAGTGC -TGCTAAAAAGAATAACTTACCTTTTAAGTTGACATGTGCAACTACTAGACAAGTTGTTAA -TGTTGTAACAACAAAGATAGCACTTAAGGGTGGTAAAATTGTTAATAATTGGTTGAAGCA -GTTAATTAAAGTTACACTTGTGTTCCTTTTTGTTGCTGCTATTTTCTATTTAATAACACC -TGTTCATGTCATGTCTAAACATACTGACTTTTCAAGTGAAATCATAGGATACAAGGCTAT -TGATGGTGGTGTCACTCGTGACATAGCATCTACAGATACTTGTTTTGCTAACAAACATGC -TGATTTTGACACATGGTTTAGCCAGCGTGGTGGTAGTTATACTAATGACAAAGCTTGCCC -ATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCAC -GATATTACGCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGT -TGGTAACATCTGTTACACACCATCAAAACTTATAGAGTACACTGACTTTGCAACATCAGC -TTGTGTTTTGGCTGCTGAATGTACAATTTTTAAAGATGCTTCTGGTAAGCCAGTACCATA -TTGTTATGATACCAATGTACTAGAAGGTTCTGTTGCTTATGAAAGTTTACGCCCTGACAC -ACGTTATGTGCTCATGGATGGCTCTATTATTCAATTTCCTAACACCTACCTTGAAGGTTC -TGTTAGAGTGGTAACAACTTTTGATTCTGAGTACTGTAGGCACGGCACTTGTGAAAGATC -AGAAGCTGGTGTTTGTGTATCTACTAGTGGTAGATGGGTACTTAACAATGATTATTACAG -ATCTTTACCAGGAGTTTTCTGTGGTGTAGATGCTGTAAATTTACTTACTAATATGTTTAC -ACCACTAATTCAACCTATTGGTGCTTTGGACATATCAGCATCTATAGTAGCTGGTGGTAT -TGTAGCTATCGTAGTAACATGCCTTGCCTACTATTTTATGAGGTTTAGAAGAGCTTTTGG -TGAATACAGTCATGTAGTTGCCTTTAATACTTTACTATTCCTTATGTCATTCACTGTACT -CTGTTTAACACCAGTTTACTCATTCTTACCTGGTGTTTATTCTGTTATTTACTTGTACTT -GACATTTTATCTTACTAATGATGTTTCTTTTTTAGCACATATTCAGTGGATGGTTATGTT -CACACCTTTAGTACCTTTCTGGATAACAATTGCTTATATCATTTGTATTTCCACAAAGCA -TTTCTATTGGTTCTTTAGTAATTACCTAAAGAGACGTGTAGTCTTTAATGGTGTTTCCTT -TAGTACTTTTGAAGAAGCTGCGCTGTGCACCTTTTTGTTAAATAAAGAAATGTATCTAAA -GTTGCGTAGTGATGTGCTATTACCTCTTACGCAATATAATAGATACTTAGCTCTTTATAA -TAAGTACAAGTATTTTAGTGGAGCAATGGATACAACTAGCTACAGAGAAGCTGCTTGTTG -TCATCTCGCAAAGGCTCTCAATGACTTCAGTAACTCAGGTTCTGATGTTCTTTACCAACC -ACCACAAACCTCTATCACCTCAGCTGTTTTGCAGAGTGGTTTTAGAAAAATGGCATTCCC -ATCTGGTAAAGTTGAGGGTTGTATGGTACAAGTAACTTGTGGTACAACTACACTTAACGG -TCTTTGGCTTGATGACGTAGTTTACTGTCCAAGACATGTGATCTGCACCTCTGAAGACAT -GCTTAACCCTAATTATGAAGATTTACTCATTCGTAAGTCTAATCATAATTTCTTGGTACA -GGCTGGTAATGTTCAACTCAGGGTTATTGGACATTCTATGCAAAATTGTGTACTTAAGCT -TAAGGTTGATACAGCCAATCCTAAGACACCTAAGTATAAGTTTGTTCGCATTCAACCAGG -ACAGACTTTTTCAGTGTTAGCTTGTTACAATGGTTCACCATCTGGTGTTTACCAATGTGC -TATGAGGCCCAATTTCACTATTAAGGGTTCATTCCTTAATGGTTCATGTGGTAGTGTTGG -TTTTAACATAGATTATGACTGTGTCTCTTTTTGTTACATGCACCATATGGAATTACCAAC -TGGAGTTCATGCTGGCACAGACTTAGAAGGTAACTTTTATGGACCTTTTGTTGACAGGCA -AACAGCACAAGCAGCTGGTACGGACACAACTATTACAGTTAATGTTTTAGCTTGGTTGTA -CGCTGCTGTTATAAATGGAGACAGGTGGTTTCTCAATCGATTTACCACAACTCTTAATGA -CTTTAACCTTGTGGCTATGAAGTACAATTATGAACCTCTAACACAAGACCATGTTGACAT -ACTAGGACCTCTTTCTGCTCAAACTGGAATTGCCGTTTTAGATATGTGTGCTTCATTAAA -AGAATTACTGCAAAATGGTATGAATGGACGTACCATATTGGGTAGTGCTTTATTAGAAGA -TGAATTTACACCTTTTGATGTTGTTAGACAATGCTCAGGTGTTACTTTCCAAAGTGCAGT -GAAAAGAACAATCAAGGGTACACACCACTGGTTGTTACTCACAATTTTGACTTCACTTTT -AGTTTTAGTCCAGAGTACTCAATGGTCTTTGTTCTTTTTTTTGTATGAAAATGCCTTTTT -ACCTTTTGCTATGGGTATTATTGCTATGTCTGCTTTTGCAATGATGTTTGTCAAACATAA -GCATGCATTTCTCTGTTTGTTTTTGTTACCTTCTCTTGCCACTGTAGCTTATTTTAATAT -GGTCTATATGCCTGCTAGTTGGGTGATGCGTATTATGACATGGTTGGATATGGTTGATAC -TAGTTTGTCTGGTTTTAAGCTAAAAGACTGTGTTATGTATGCATCAGCTGTAGTGTTACT -AATCCTTATGACAGCAAGAACTGTGTATGATGATGGTGCTAGGAGAGTGTGGACACTTAT -GAATGTCTTGACACTCGTTTATAAAGTTTATTATGGTAATGCTTTAGATCAAGCCATTTC -CATGTGGGCTCTTATAATCTCTGTTACTTCTAACTACTCAGGTGTAGTTACAACTGTCAT -GTTTTTGGCCAGAGGTATTGTTTTTATGTGTGTTGAGTATTGCCCTATTTTCTTCATAAC -TGGTAATACACTTCAGTGTATAATGCTAGTTTATTGTTTCTTAGGCTATTTTTGTACTTG -TTACTTTGGCCTCTTTTGTTTACTCAACCGCTACTTTAGACTGACTCTTGGTGTTTATGA -TTACTTAGTTTCTACACAGGAGTTTAGATATATGAATTCACAGGGACTACTCCCACCCAA -GAATAGCATAGATGCCTTCAAACTCAACATTAAATTGTTGGGTGTTGGTGGCAAACCTTG -TATCAAAGTAGCCACTGTACAGTCTAAAATGTCAGATGTAAAGTGCACATCAGTAGTCTT -ACTCTCAGTTTTGCAACAACTCAGAGTAGAATCATCATCTAAATTGTGGGCTCAATGTGT -CCAGTTACACAATGACATTCTCTTAGCTAAAGATACTACTGAAGCCTTTGAAAAAATGGT -TTCACTACTTTCTGTTTTGCTTTCCATGCAGGGTGCTGTAGACATAAACAAGCTTTGTGA -AGAAATGCTGGACAACAGGGCAACCTTACAAGCTATAGCCTCAGAGTTTAGTTCCCTTCC -ATCATATGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAGCAGGCTGTTGCTAATGGTGA -TTCTGAAGTTGTTCTTAAAAAGTTGAAGAAGTCTTTGAATGTGGCTAAATCTGAATTTGA -CCGTGATGCAGCCATGCAACGTAAGTTGGAAAAGATGGCTGATCAAGCTATGACCCAAAT -GTATAAACAGGCTAGATCTGAGGACAAGAGGGCAAAAGTTACTAGTGCTATGCAGACAAT -GCTTTTCACTATGCTTAGAAAGTTGGATAATGATGCACTCAACAACATTATCAACAATGC -AAGAGATGGTTGTGTTCCCTTGAACATAATACCTCTTACAACAGCAGCCAAACTAATGGT -TGTCATACCAGACTATAACACATATAAAAATACGTGTGATGGTACAACATTTACTTATGC -ATCAGCATTGTGGGAAATCCAACAGGTTGTAGATGCAGATAGTAAAATTGTTCAACTTAG -TGAAATTAGTATGGACAATTCACCTAATTTAGCATGGCCTCTTATTGTAACAGCTTTAAG -GGCCAATTCTGCTGTCAAATTACAGAATAATGAGCTTAGTCCTGTTGCACTACGACAGAT -GTCTTGTGCTGCCGGTACTACACAAACTGCTTGCACTGATGACAATGCGTTAGCTTACTA -CAACACAACAAAGGGAGGTAGGTTTGTACTTGCACTGTTATCCGATTTACAGGATTTGAA -ATGGGCTAGATTCCCTAAGAGTGATGGAACTGGTACTATCTATACAGAACTGGAACCACC -TTGTAGGTTTGTTACAGACACACCTAAAGGTCCTAAAGTGAAGTATTTATACTTTATTAA -AGGATTAAACAACCTAAATAGAGGTATGGTACTTGGTAGTTTAGCTGCCACAGTACGTCT -ACAAGCTGGTAATGCAACAGAAGTGCCTGCCAATTCAACTGTATTATCTTTCTGTGCTTT -TGCTGTAGATGCTGCTAAAGCTTACAAAGATTATCTAGCTAGTGGGGGACAACCAATCAC -TAATTGTGTTAAGATGTTGTGTACACACACTGGTACTGGTCAGGCAATAACAGTTACACC -GGAAGCCAATATGGATCAAGAATCCTTTGGTGGTGCATCGTGTTGTCTGTACTGCCGTTG -CCACATAGATCATCCAAATCCTAAAGGATTTTGTGACTTAAAAGGTAAGTATGTACAAAT -ACCTACAACTTGTGCTAATGACCCTGTGGGTTTTACACTTAAAAACACAGTCTGTACCGT -CTGCGGTATGTGGAAAGGTTATGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCA -GTCAGCTGATGCACAATCGTTTTTAAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACA -CCGTGCGGCACAGGCACTAGTACTGATGTCGTATACAGGGCTTTTGACATCTACAATGAT -AAAGTAGCTGGTTTTGCTAAATTCCTAAAAACTAATTGTTGTCGCTTCCAAGAAAAGGAC -GAAGATGACAATTTAATTGATTCTTACTTTGTAGTTAAGAGACACACTTTCTCTAACTAC -CAACATGAAGAAACAATTTATAATTTACTTAAGGATTGTCCAGCTGTTGCTAAACATGAC -TTCTTTAAGTTTAGAATAGACGGTGACATGGTACCACATATATCACGTCAACGTCTTACT -AAATACACAATGGCAGACCTCGTCTATGCTTTAAGGCATTTTGATGAAGGTAATTGTGAC -ACATTAAAAGAAATACTTGTCACATACAATTGTTGTGATGATGATTATTTCAATAAAAAG -GACTGGTATGATTTTGTAGAAAACCCAGATATATTACGCGTATACGCCAACTTAGGTGAA -CGTGTACGCCAAGCTTTGTTAAAAACAGTACAATTCTGTGATGCCATGCGAAATGCTGGT -ATTGTTGGTGTACTGACATTAGATAATCAAGATCTCAATGGTAACTGGTATGATTTCGGT -GATTTCATACAAACCACGCCAGGTAGTGGAGTTCCTGTTGTAGATTCTTATTATTCATTG -TTAATGCCTATATTAACCTTGACCAGGGCTTTAACTGCAGAGTCACATGTTGACACTGAC -TTAACAAAGCCTTACATTAAGTGGGATTTGTTAAAATATGACTTCACGGAAGAGAGGTTA -AAACTCTTTGACCGTTATTTTAAATATTGGGATCAGACATACCACCCAAATTGTGTTAAC -TGTTTGGATGACAGATGCATTCTGCATTGTGCAAACTTTAATGTTTTATTCTCTACAGTG -TTCCCACCTACAAGTTTTGGACCACTAGTGAGAAAAATATTTGTTGATGGTGTTCCATTT -GTAGTTTCAACTGGATACCACTTCAGAGAGCTAGGTGTTGTACATAATCAGGATGTAAAC -TTACATAGCTCTAGACTTAGTTTTAAGGAATTACTTGTGTATGCTGCTGACCCTGCTATG -CACGCTGCTTCTGGTAATCTATTACTAGATAAACGCACTACGTGCTTTTCAGTAGCTGCA -CTTACTAACAATGTTGCTTTTCAAACTGTCAAACCCGGTAATTTTAACAAAGACTTCTAT -GACTTTGCTGTGTCTAAGGGTTTCTTTAAGGAAGGAAGTTCTGTTGAATTAAAACACTTC -TTCTTTGCTCAGGATGGTAATGCTGCTATCAGCGATTATGACTACTATCGTTATAATCTA -CCAACAATGTGTGATATCAGACAACTACTATTTGTAGTTGAAGTTGTTGATAAGTACTTT -GATTGTTACGATGGTGGCTGTATTAATGCTAACCAAGTCATCGTCAACAACCTAGACAAA -TCAGCTGGTTTTCCATTTAATAAATGGGGTAAGGCTAGACTTTATTATGATTCAATGAGT -TATGAGGATCAAGATGCACTTTTCGCATATACAAAACGTAATGTCATCCCTACTATAACT -CAAATGAATCTTAAGTATGCCATTAGTGCAAAGAATAGAGCTCGCACCGTAGCTGGTGTC -TCTATCTGTAGTACTATGACCAATAGACAGTTTCATCAAAAATTATTGAAATCAATAGCC -GCCACTAGAGGAGCTACTGTAGTAATTGGAACAAGCAAATTCTATGGTGGTTGGCACAAC -ATGTTAAAAACTGTTTATAGTGATGTAGAAAACCCTCACCTTATGGGTTGGGATTATCCT -AAATGTGATAGAGCCATGCCTAACATGCTTAGAATTATGGCCTCACTTGTTCTTGCTCGC -AAACATACAACGTGTTGTAGCTTGTCACACCGTTTCTATAGATTAGCTAATGAGTGTGCT -CAAGTATTGAGTGAAATGGTCATGTGTGGCGGTTCACTATATGTTAAACCAGGTGGAACC -TCATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTTTTAACATTTGTCAAGCTGTC -ACGGCCAATGTTAATGCACTTTTATCTACTGATGGTAACAAAATTGCCGATAAGTATGTC -CGCAATTTACAACACAGACTTTATGAGTGTCTCTATAGAAATAGAGATGTTGACACAGAC -TTTGTGAATGAGTTTTACGCATATTTGCGTAAACATTTCTCAATGATGATACTCTCTGAC -GATGCTGTTGTGTGTTTCAATAGCACTTATGCATCTCAAGGTCTAGTGGCTAGCATAAAG -AACTTTAAGTCAGTTCTTTATTATCAAAACAATGTTTTTATGTCTGAAGCAAAATGTTGG -ACTGAGACTGACCTTACTAAAGGACCTCATGAATTTTGCTCTCAACATACAATGCTAGTT -AAACAGGGTGATGATTATGTGTACCTTCCTTACCCAGATCCATCAAGAATCCTAGGGGCC -GGCTGTTTTGTAGATGATATCGTAAAAACAGATGGTACACTTATGATTGAACGGTTCGTG -TCTTTAGCTATAGATGCTTACCCACTTACTAAACATCCTAATCAGGAGTATGCTGATGTC -TTTCATTTGTACTTACAATACATAAGAAAGCTACATGATGAGTTAACAGGACACATGTTA -GACATGTATTCTGTTATGCTTACTAATGATAACACTTCAAGGTATTGGGAACCTGAGTTT -TATGAGGCTATGTACACACCGCATACAGTCTTACAGGCTGTTGGGGCTTGTGTTCTTTGC -AATTCACAGACTTCATTAAGATGTGGTGCTTGCATACGTAGACCATTCTTATGTTGTAAA -TGCTGTTACGACCATGTCATATCAACATCACATAAATTAGTCTTGTCTGTTAATCCGTAT -GTTTGCAATGCTCCAGGTTGTGATGTCACAGATGTGACTCAACTTTACTTAGGAGGTATG -AGCTATTATTGTAAATCACATAAACCACCCATTAGTTTTCCATTGTGTGCTAATGGACAA -GTTTTTGGTTTATATAAAAATACATGTGTTGGTAGCGATAATGTTACTGACTTTAATGCA -ATTGCAACATGTGACTGGACAAATGCTGGTGATTACATTTTAGCTAACACCTGTACTGAA -AGACTCAAGCTTTTTGCAGCAGAAACGCTCAAAGCTACTGAGGAGACATTTAAACTGTCT -TATGGTATTGCTACTGTACGTGAAGTGCTGTCTGACAGAGAATTACATCTTTCATGGGAA -GTTGGTAAACCTAGACCACCACTTAACCGAAATTATGTCTTTACTGGTTATCGTGTAACT -AAAAACAGTAAAGTACAAATAGGAGAGTACACCTTTGAAAAAGGTGACTATGGTGATGCT -GTTGTTTACCGAGGTACAACAACTTACAAATTAAATGTTGGTGATTATTTTGTGCTGACA -TCACATACAGTAATGCCATTAAGTGCACCTACACTAGTGCCACAAGAGCACTATGTTAGA -ATTACTGGCTTATACCCAACACTCAATATCTCAGATGAGTTTTCTAGCAATGTTGCAAAT -TATCAAAAGGTTGGTATGCAAAAGTATTCTACACTCCAGGGACCACCTGGTACTGGTAAG -AGTCATTTTGCTATTGGCCTAGCTCTCTACTACCCTTCTGCTCGCATAGTGTATACAGCT -TGCTCTCATGCCGCTGTTGATGCACTATGTGAGAAGGCATTAAAATATTTGCCTATAGAT -AAATGTAGTAGAATTATACCTGCACGTGCTCGTGTAGAGTGTTTTGATAAATTCAAAGTG -AATTCAACATTAGAACAGTATGTCTTTTGTACTGTAAATGCATTGCCTGAGACGACAGCA -GATATAGTTGTCTTTGATGAAATTTCAATGGCCACAAATTATGATTTGAGTGTTGTCAAT -GCCAGATTACGTGCTAAGCACTATGTGTACATTGGCGACCCTGCTCAATTACCTGCACCA -CGCACATTGCTAACTAAGGGCACACTAGAACCAGAATATTTCAATTCAGTGTGTAGACTT -ATGAAAACTATAGGTCCAGACATGTTCCTCGGAACTTGTCGGCGTTGTCCTGCTGAAATT -GTTGACACTGTGAGTGCTTTGGTTTATGATAATAAGCTTAAAGCACATAAAGACAAATCA -GCTCAATGCTTTAAAATGTTTTATAAGGGTGTTATCACGCATGATGTTTCATCTGCAATT -AACAGGCCACAAATAGGCGTGGTAAGAGAATTCCTTACACGTAACCCTGCTTGGAGAAAA -GCTGTCTTTATTTCACCTTATAATTCACAGAATGCTGTAGCCTCAAAGATTTTGGGACTA -CCAACTCAAACTGTTGATTCATCACAGGGCTCAGAATATGACTATGTCATATTCACTCAA -ACCACTGAAACAGCTCACTCTTGTAATGTAAACAGATTTAATGTTGCTATTACCAGAGCA -AAAGTAGGCATACTTTGCATAATGTCTGATAGAGACCTTTATGACAAGTTGCAATTTACA -AGTCTTGAAATTCCACGTAGGAATGTGGCAACTTTACAAGCTGAAAATGTAACAGGACTC -TTTAAAGATTGTAGTAAGGTAATCACTGGGTTACATCCTACACAGGCACCTACACACCTC -AGTGTTGACACTAAATTCAAAACTGAAGGTTTATGTGTTGACATACCTGGCATACCTAAG -GACATGACCTATAGAAGACTCATCTCTATGATGGGTTTTAAAATGAATTATCAAGTTAAT -GGTTACCCTAACATGTTTATCACCCGCGAAGAAGCTATAAGACATGTACGTGCATGGATT -GGCTTCGATGTCGAGGGGTGTCATGCTACTAGAGAAGCTGTTGGTACCAATTTACCTTTA -CAGCTAGGTTTTTCTACAGGTGTTAACCTAGTTGCTGTACCTACAGGTTATGTTGATACA -CCTAATAATACAGATTTTTCCAGAGTTAGTGCTAAACCACCGCCTGGAGATCAATTTAAA -CACCTCATACCACTTATGTACAAAGGACTTCCTTGGAATGTAGTGCGTATAAAGATTGTA -CAAATGTTAAGTGACACACTTAAAAATCTCTCTGACAGAGTCGTATTTGTCTTATGGGCA -CATGGCTTTGAGTTGACATCTATGAAGTATTTTGTGAAAATAGGACCTGAGCGCACCTGT -TGTCTATGTGATAGACGTGCCACATGCTTTTCCACTGCTTCAGACACTTATGCCTGTTGG -CATCATTCTATTGGATTTGATTACGTCTATAATCCGTTTATGATTGATGTTCAACAATGG -GGTTTTACAGGTAACCTACAAAGCAACCATGATCTGTATTGTCAAGTCCATGGTAATGCA -CATGTAGCTAGTTGTGATGCAATCATGACTAGGTGTCTAGCTGTCCACGAGTGCTTTGTT -AAGCGTGTTGACTGGACTATTGAATATCCTATAATTGGTGATGAACTGAAGATTAATGCG -GCTTGTAGAAAGGTTCAACACATGGTTGTTAAAGCTGCATTATTAGCAGACAAATTCCCA -GTTCTTCACGACATTGGTAACCCTAAAGCTATTAAGTGTGTACCTCAAGCTGATGTAGAA -TGGAAGTTCTATGATGCACAGCCTTGTAGTGACAAAGCTTATAAAATAGAAGAATTATTC -TATTCTTATGCCACACATTCTGACAAATTCACAGATGGTGTATGCCTATTTTGGAATTGC -AATGTCGATAGATATCCTGCTAATTCCATTGTTTGTAGATTTGACACTAGAGTGCTATCT -AACCTTAACTTGCCTGGTTGTGATGGTGGCAGTTTGTATGTAAATAAACATGCATTCCAC -ACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTAC -TCTGACAGTCCATGTGAGTCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCA -CTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGTGCTGTCTGTAGACATCAT -GCTAATGAGTACAGATTGTATCTCGATGCTTATAACATGATGATCTCAGCTGGCTTTAGC -TTGTGGGTTTACAAACAATTTGATACTTATAACCTCTGGAACACTTTTACAAGACTTCAG -AGTTTAGAAAATGTGGCTTTTAATGTTGTAAATAAGGGACACTTTGATGGACAACAGGGT -GAAGTACCAGTTTCTATCATTAATAACACTGTTTACACAAAAGTTGATGGTGTTGATGTA -GAATTGTTTGAAAATAAAACAACATTACCTGTTAATGTAGCATTTGAGCTTTGGGCTAAG -CGCAACATTAAACCAGTACCAGAGGTGAAAATACTCAATAATTTGGGTGTGGACATTGCT -GCTAATACTGTGATCTGGGACTACAAAAGAGATGCTCCAGCACATATATCTACTATTGGT -GTTTGTTCTATGACTGACATAGCCAAGAAACCAACTGAAACGATTTGTGCACCACTCACT -GTCTTTTTTGATGGTAGAGTTGATGGTCAAGTAGACTTATTTAGAAATGCCCGTAATGGT -GTTCTTATTACAGAAGGTAGTGTTAAAGGTTTACAACCATCTGTAGGTCCCAAACAAGCT -AGTCTTAATGGAGTCACATTAATTGGAGAAGCCGTAAAAACACAGTTCAATTATTATAAG -AAAGTTGATGGTGTTGTCCAACAATTACCTGAAACTTACTTTACTCAGAGTAGAAATTTA -CAAGAATTTAAACCCAGGAGTCAAATGGAAATTGATTTCTTAGAATTAGCTATGGATGAA -TTCATTGAACGGTATAAATTAGAAGGCTATGCCTTCGAACATATCGTTTATGGAGATTTT -AGTCATAGTCAGTTAGGTGGTTTACATCTACTGATTGGACTAGCTAAACGTTTTAAGGAA -TCACCTTTTGAATTAGAAGATTTTATTCCTATGGACAGTACAGTTAAAAACTATTTCATA -ACAGATGCGCAAACAGGTTCATCTAAGTGTGTGTGTTCTGTTATTGATTTATTACTTGAT -GATTTTGTTGAAATAATAAAATCCCAAGATTTATCTGTAGTTTCTAAGGTTGTCAAAGTG -ACTATTGACTATACAGAAATTTCATTTATGCTTTGGTGTAAAGATGGCCATGTAGAAACA -TTTTACCCAAAATTACAATCTAGTCAAGCGTGGCAACCGGGTGTTGCTATGCCTAATCTT -TACAAAATGCAAAGAATGCTATTAGAAAAGTGTGACCTTCAAAATTATGGTGATAGTGCA -ACATTACCTAAAGGCATAATGATGAATGTCGCAAAATATACTCAACTGTGTCAATATTTA -AACACATTAACATTAGCTGTACCCTATAATATGAGAGTTATACATTTTGGTGCTGGTTCT -GATAAAGGAGTTGCACCAGGTACAGCTGTTTTAAGACAGTGGTTGCCTACGGGTACGCTG -CTTGTCGATTCAGATCTTAATGACTTTGTCTCTGATGCAGATTCAACTTTGATTGGTGAT -TGTGCAACTGTACATACAGCTAATAAATGGGATCTCATTATTAGTGATATGTACGACCCT -AAGACTAAAAATGTTACAAAAGAAAATGACTCTAAAGAGGGTTTTTTCACTTACATTTGT -GGGTTTATACAACAAAAGCTAGCTCTTGGAGGTTCCGTGGCTATAAAGATAACAGAACAT -TCTTGGAATGCTGATCTTTATAAGCTCATGGGACACTTCGCATGGTGGACAGCCTTTGTT -ACTAATGTGAATGCGTCATCATCTGAAGCATTTTTAATTGGATGTAATTATCTTGGCAAA -CCACGCGAACAAATAGATGGTTATGTCATGCATGCAAATTACATATTTTGGAGGAATACA -AATCCAATTCAGTTGTCTTCCTATTCTTTATTTGACATGAGTAAATTTCCCCTTAAATTA -AGGGGTACTGCTGTTATGTCTTTAAAAGAAGGTCAAATCAATGATATGATTTTATCTCTT -CTTAGTAAAGGTAGACTTATAATTAGAGAAAACAACAGAGTTGTTATTTCTAGTGATGTT -CTTGTTAACAACTAAACGAACAATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAG -TCAGTGTGTTAATCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCAC -ACGTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGA -CTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCATGCTATACATGTCTCTGGGAC -CAATGGTACTAAGAGGTTTGATAACCCTGTCCTACCATTTAATGATGGTGTTTATTTTGC -TTCCACTGAGAAGTCTAACATAATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAA -GACCCAGTCCCTACTTATTGTTAATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATT -TCAATTTTGTAATGATCCATTTTTGGGTGTTTATTACCACAAAAACAACAAAAGTTGGAT -GGAAAGTGAGTTCAGAGTTTATTCTAGTGCGAATAATTGCACTTTTGAATATGTCTCTCA -GCCTTTTCTTATGGACCTTGAAGGAAAACAGGGTAATTTCAAAAATCTTAGGGAATTTGT -GTTTAAGAATATTGATGGTTATTTTAAAATATATTCTAAGCACACGCCTATTAATTTAGT -GCGTGATCTCCCTCAGGGTTTTTCGGCTTTAGAACCATTGGTAGATTTGCCAATAGGTAT -TAACATCACTAGGTTTCAAACTTTACTTGCTTTACATAGAAGTTATTTGACTCCTGGTGA -TTCTTCTTCAGGTTGGACAGCTGGTGCTGCAGCTTATTATGTGGGTTATCTTCAACCTAG -GACTTTTCTATTAAAATATAATGAAAATGGAACCATTACAGATGCTGTAGACTGTGCACT -TGACCCTCTCTCAGAAACAAAGTGTACGTTGAAATCCTTCACTGTAGAAAAAGGAATCTA -TCAAACTTCTAACTTTAGAGTCCAACCAACAGAATCTATTGTTAGATTTCCTAATATTAC -AAACTTGTGCCCTTTTGGTGAAGTTTTTAACGCCACCAGATTTGCATCTGTTTATGCTTG -GAACAGGAAGAGAATCAGCAACTGTGTTGCTGATTATTCTGTCCTATATAATTCCGCATC -ATTTTCCACTTTTAAGTGTTATGGAGTGTCTCCTACTAAATTAAATGATCTCTGCTTTAC -TAATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGG -GCAAACTGGAAAGATTGCTGATTATAATTATAAATTACCAGATGATTTTACAGGCTGCGT -TATAGCTTGGAATTCTAACAATCTTGATTCTAAGGTTGGTGGTAATTATAATTACCTGTA -TAGATTGTTTAGGAAGTCTAATCTCAAACCTTTTGAGAGAGATATTTCAACTGAAATCTA -TCAGGCCGGTAGCACACCTTGTAATGGTGTTGAAGGTTTTAATTGTTACTTTCCTTTACA -ATCATATGGTTTCCAACCCACTAATGGTGTTGGTTACCAACCATACAGAGTAGTAGTACT -TTCTTTTGAACTTCTACATGCACCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTT -GGTTAAAAACAAATGTGTCAATTTCAACTTCAATGGTTTAACAGGCACAGGTGTTCTTAC -TGAGTCTAACAAAAAGTTTCTGCCTTTCCAACAATTTGGCAGAGACATTGCTGACACTAC -TGATGCTGTCCGTGATCCACAGACACTTGAGATTCTTGACATTACACCATGTTCTTTTGG -TGGTGTCAGTGTTATAACACCAGGAACAAATACTTCTAACCAGGTTGCTGTTCTTTATCA -GGATGTTAACTGCACAGAAGTCCCTGTTGCTATTCATGCAGATCAACTTACTCCTACTTG -GCGTGTTTATTCTACAGGTTCTAATGTTTTTCAAACACGTGCAGGCTGTTTAATAGGGGC -TGAACATGTCAACAACTCATATGAGTGTGACATACCCATTGGTGCAGGTATATGCGCTAG -TTATCAGACTCAGACTAATTCTCCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATCAT -TGCCTACACTATGTCACTTGGTGCAGAAAATTCAGTTGCTTACTCTAATAACTCTATTGC -CATACCCACAAATTTTACTATTAGTGTTACCACAGAAATTCTACCAGTGTCTATGACCAA -GACATCAGTAGATTGTACAATGTACATTTGTGGTGATTCAACTGAATGCAGCAATCTTTT -GTTGCAATATGGCAGTTTTTGTACACAATTAAACCGTGCTTTAACTGGAATAGCTGTTGA -ACAAGACAAAAACACCCAAGAAGTTTTTGCACAAGTCAAACAAATTTACAAAACACCACC -AATTAAAGATTTTGGTGGTTTTAATTTTTCACAAATATTACCAGATCCATCAAAACCAAG -CAAGAGGTCATTTATTGAAGATCTACTTTTCAACAAAGTGACACTTGCAGATGCTGGCTT -CATCAAACAATATGGTGATTGCCTTGGTGATATTGCTGCTAGAGACCTCATTTGTGCACA -AAAGTTTAACGGCCTTACTGTTTTGCCACCTTTGCTCACAGATGAAATGATTGCTCAATA -CACTTCTGCACTGTTAGCGGGTACAATCACTTCTGGTTGGACCTTTGGTGCAGGTGCTGC -ATTACAAATACCATTTGCTATGCAAATGGCTTATAGGTTTAATGGTATTGGAGTTACACA -GAATGTTCTCTATGAGAACCAAAAATTGATTGCCAACCAATTTAATAGTGCTATTGGCAA -AATTCAAGACTCACTTTCTTCCACAGCAAGTGCACTTGGAAAACTTCAAGATGTGGTCAA -CCAAAATGCACAAGCTTTAAACACGCTTGTTAAACAACTTAGCTCCAATTTTGGTGCAAT -TTCAAGTGTTTTAAATGATATCCTTTCACGTCTTGACAAAGTTGAGGCTGAAGTGCAAAT -TGATAGGTTGATCACAGGCAGACTTCAAAGTTTGCAGACATATGTGACTCAACAATTAAT -TAGAGCTGCAGAAATCAGAGCTTCTGCTAATCTTGCTGCTACTAAAATGTCAGAGTGTGT -ACTTGGACAATCAAAAAGAGTTGATTTTTGTGGAAAGGGCTATCATCTTATGTCCTTCCC -TCAGTCAGCACCTCATGGTGTAGTCTTCTTGCATGTGACTTATGTCCCTGCACAAGAAAA -GAACTTCACAACTGCTCCTGCCATTTGTCATGATGGAAAAGCACACTTTCCTCGTGAAGG -TGTCTTTGTTTCAAATGGCACACACTGGTTTGTAACACAAAGGAATTTTTATGAACCACA -AATCATTACTACAGACAACACATTTGTGTCTGGTAACTGTGATGTTGTAATAGGAATTGT -CAACAACACAGTTTATGATCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGA -TAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGGTGACATCTCTGGCATTAA -TGCTTCAGTTGTAAACATTCAAAAAGAAATTGACCGCCTCAATGAGGTTGCCAAGAATTT -AAATGAATCTCTCATCGATCTCCAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCC -ATGGTACATTTGGCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTAT -GCTTTGCTGTATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTG -CTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACAC -ATAAACGAACTTATGGATTTGTTTATGAGAATCTTCACAATTGGAACTGTAACTTTGAAG -CAAGGTGAAATCAAGGATGCTACTCCTTCAGATTTTGTTCGCGCTACTGCAACGATACCG -ATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCACTTCTTGCTGTTTTT -CAGAGCGCTTCCAAAATCATAACCCTCAAAAAGAGATGGCAACTAGCACTCTCCAAGGGT -GTTCACTTTGTTTGCAACTTGCTGTTGTTGTTTGTAACAGTTTACTCACACCTTTTGCTC -GTTGCTGCTGGCCTTGAAGCCCCTTTTCTCTATCTTTATGCTTTAGTCTACTTCTTGCAG -AGTATAAACTTTGTAAGAATAATAATGAGGCTTTGGCTTTGCTGGAAATGCCGTTCCAAA -AACCCATTACTTTATGATGCCAACTATTTTCTTTGCTGGCATACTAATTGTTACGACTAT -TGTATACCTTACAATAGTGTAACTTCTTCAATTGTCATTACTTCAGGTGATGGCACAACA -AGTCCTATTTCTGAACATGACTACCAGATTGGTGGTTATACTGAAAAATGGGAATCTGGA -GTAAAAGACTGTGTTGTATTACACAGTTACTTCACTTCAGACTATTACCAGCTGTACTCA -ACTCAATTGAGTACAGACACTGGTGTTGAACATGTTACCTTCTTCATCTACAATAAAATT -GTTGATGAGCCTGAAGAACATGTCCAAATTCACACAATCGACGGTTCATCCGGAGTTGTT -AATCCAGTAATGGAACCAATTTATGATGAACCGACGACGACTACTAGCGTGCCTTTGTAA -GCACAAGCTGATGAGTACGAACTTATGTACTCATTCGTTTCGGAAGAGACAGGTACGTTA -ATAGTTAATAGCGTACTTCTTTTTCTTGCTTTCGTGGTATTCTTGCTAGTTACACTAGCC -ATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTTGTA -AAACCTTCTTTTTACGTTTACTCTCGTGTTAAAAATCTGAATTCTTCTAGAGTTCCTGAT -CTTCTGGTCTAAACGAACTAAATATTATATTAGTTTTTCTGTTTGGAACTTTAATTTTAG -CCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTCCTTGAACAAT -GGAACCTAGTAATAGGTTTCCTATTCCTTACATGGATTTGTCTTCTACAATTTGCCTATG -CCAACAGGAATAGGTTTTTGTATATAATTAAGTTAATTTTCCTCTGGCTGTTATGGCCAG -TAACTTTAGCTTGTTTTGTGCTTGCTGCTGTTTACAGAATAAATTGGATCACCGGTGGAA -TTGCTATCGCAATGGCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTT -TCAGACTGTTTGCGCGTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAACATTCTTC -TCAACGTGCCACTCCATGGCACTATTCTGACCAGACCGCTTCTAGAAAGTGAACTCGTAA -TCGGAGCTGTGATCCTTCGTGGACATCTTCGTATTGCTGGACACCATCTAGGACGCTGTG -ACATCAAGGACCTGCCTAAAGAAATCACTGTTGCTACATCACGAACGCTTTCTTATTACA -AATTGGGAGCTTCGCAGCGTGTAGCAGGTGACTCAGGTTTTGCTGCATACAGTCGCTACA -GGATTGGCAACTATAAATTAAACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGC -TTGTACAGTAAGTGACAACAGATGTTTCATCTCGTTGACTTTCAGGTTACTATAGCAGAG -ATATTACTAATTATTATGAGGACTTTTAAAGTTTCCATTTGGAATCTTGATTACATCATA -AACCTCATAATTAAAAATTTATCTAAGTCACTAACTGAGAATAAATATTCTCAATTAGAT -GAAGAGCAACCAATGGAGATTGATTAAACGAACATGAAAATTATTCTTTTCTTGGCACTG -ATAACACTCGCTACTTGTGAGCTTTATCACTACCAAGAGTGTGTTAGAGGTACAACAGTA -CTTTTAAAAGAACCTTGCTCTTCTGGAACATACGAGGGCAATTCACCATTTCATCCTCTA -GCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGAC -GGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGA -CAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTT -ATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGATTGAACTTTCATTAATTGACT -TCTATTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTATCTTTT -GGTTCTCACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAAT -TTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTAC -AGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATT -CTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGG -ATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCT -GTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTT -CGTTCTATGAAGACTTTTTAGAGTATCATGACGTTCGTGTTGTTTTAGATTTCATCTAAA -CGAACAAACTAAAATGTCTGATAATGGACCCCAAAATCAGCGAAATGCACCCCGCATTAC -GTTTGGTGGACCCTCAGATTCAACTGGCAGTAACCAGAATGGAGAACGCAGTGGGGCGCG -ATCAAAACAACGTCGGCCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCT -CACTCAACATGGCAAGGAAGACCTTAAATTCCCTCGAGGACAAGGCGTTCCAATTAACAC -CAATAGCAGTCCAGATGACCAAATTGGCTACTACCGAAGAGCTACCAGACGAATTCGTGG -TGGTGACGGTAAAATGAAAGATCTCAGTCCAAGATGGTATTTCTACTACCTAGGAACTGG -GCCAGAAGCTGGACTTCCCTATGGTGCTAACAAAGACGGCATCATATGGGTTGCAACTGA -GGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGCAATCCTGCTAACAATGCTGC -AATCGTGCTACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAAGGGAG -CAGAGGCGGCAGTCAAGCCTCTTCTCGTTCCTCATCACGTAGTCGCAACAGTTCAAGAAA -TTCAACTCCAGGCAGCAGTAGGGGAACTTCTCCTGCTAGAATGGCTGGCAATGGCGGTGA -TGCTGCTCTTGCTTTGCTGCTGCTTGACAGATTGAACCAGCTTGAGAGCAAAATGTCTGG -TAAAGGCCAACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCTTCTAA -GAAGCCTCGGCAAAAACGTACTGCCACTAAAGCATACAATGTAACACAAGCTTTCGGCAG -ACGTGGTCCAGAACAAACCCAAGGAAATTTTGGGGACCAGGAACTAATCAGACAAGGAAC -TGATTACAAACATTGGCCGCAAATTGCACAATTTGCCCCCAGCGCTTCAGCGTTCTTCGG -AATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGC -CATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCA -TATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGC -TGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCC -TGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTC -AACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGC -TTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGC -ACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTA -GGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGT 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varskip-0317-1_56_LEFT 1 + -MN908947.3 22480 22510 varskip-0317-1_55_RIGHT 0 - -MN908947.3 22749 22776 varskip-0317-1_57_LEFT 0 + -MN908947.3 22879 22907 varskip-0317-1_56_RIGHT 1 - -MN908947.3 23122 23144 varskip-0317-1_58_LEFT 1 + -MN908947.3 23288 23310 varskip-0317-1_57_RIGHT 0 - -MN908947.3 23545 23567 varskip-0317-1_59_LEFT 0 + -MN908947.3 23681 23708 varskip-0317-1_58_RIGHT 1 - -MN908947.3 23979 24002 varskip-0317-1_60_LEFT 1 + -MN908947.3 24112 24134 varskip-0317-1_59_RIGHT 0 - -MN908947.3 24375 24397 varskip-0317-1_61_LEFT 0 + -MN908947.3 24518 24541 varskip-0317-1_60_RIGHT 1 - -MN908947.3 24789 24811 varskip-0317-1_62_LEFT 1 + -MN908947.3 24924 24948 varskip-0317-1_61_RIGHT 0 - -MN908947.3 25171 25200 varskip-0317-1_63_LEFT 0 + -MN908947.3 25331 25353 varskip-0317-1_62_RIGHT 1 - -MN908947.3 25575 25600 varskip-0317-1_64_LEFT 1 + -MN908947.3 25725 25754 varskip-0317-1_63_RIGHT 0 - -MN908947.3 25970 25995 varskip-0317-1_65_LEFT_alt1 0 + -MN908947.3 26120 26143 varskip-0317-1_64_RIGHT 1 - -MN908947.3 26359 26381 varskip-0317-1_66_LEFT 1 + -MN908947.3 26497 26525 varskip-0317-1_65_RIGHT 0 - -MN908947.3 26706 26728 varskip-0317-1_67_LEFT 0 + -MN908947.3 26905 26927 varskip-0317-1_66_RIGHT 1 - -MN908947.3 27081 27103 varskip-0317-1_68_LEFT 1 + -MN908947.3 27256 27283 varskip-0317-1_67_RIGHT 0 - -MN908947.3 27485 27511 varskip-0317-1_69_LEFT_alt1 0 + -MN908947.3 27647 27671 varskip-0317-1_68_RIGHT 1 - -MN908947.3 27835 27859 varskip-0317-1_70_LEFT 1 + -MN908947.3 28051 28076 varskip-0317-1_69_RIGHT 0 - -MN908947.3 28219 28243 varskip-0317-1_71_LEFT 0 + -MN908947.3 28380 28400 varskip-0317-1_70_RIGHT 1 - -MN908947.3 28627 28649 varskip-0317-1_72_LEFT 1 + -MN908947.3 28783 28805 varskip-0317-1_71_RIGHT 0 - -MN908947.3 29062 29088 varskip-0317-1_73_LEFT 0 + -MN908947.3 29203 29225 varskip-0317-1_72_RIGHT 1 - -MN908947.3 29270 29292 varskip-0317-1_74_LEFT 1 + -MN908947.3 29617 29644 varskip-0317-1_73_RIGHT 0 - -MN908947.3 29799 29831 varskip-0317-1_74_RIGHT 1 - diff --git a/sars-cov-2/varskip/vss1a/info.yml b/sars-cov-2/varskip/vss1a/info.yml deleted file mode 100644 index 1d9ae84..0000000 --- a/sars-cov-2/varskip/vss1a/info.yml +++ /dev/null @@ -1,22 +0,0 @@ -schema_version: 0.9.0 -name: varskip-vss1a -display_name: VarSkip VSS1A -organism: sars-cov-2 -developers: -- organisation_name: New England BioLabs - home_page: https://neb.com -- organisation_name: ARTIC network - home_page: https://artic.network -vendors: -- organisation_name: New England BioLabs - home_page: https://neb.com -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/varskip/vss1a -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -notes: -- Adapted from bed + tsv at https://github.com/nebiolabs/VarSkip with help from Brad - Langhorst -primer_scheme_status: DEPRECATED -primer_checksum: primaschema:f0d4caf86103e510 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/varskip/vss1a/primer.bed b/sars-cov-2/varskip/vss1a/primer.bed deleted file mode 100644 index cf462ad..0000000 --- a/sars-cov-2/varskip/vss1a/primer.bed +++ /dev/null @@ -1,148 +0,0 @@ -MN908947.3 22 46 varskip-0317-1_01_LEFT 0 + GGTAACAAACCAACCAACTTTCGA -MN908947.3 418 443 varskip-0317-1_02_LEFT 1 + GGCTTAGTAGAAGTTGAAAAAGGCG -MN908947.3 559 581 varskip-0317-1_01_RIGHT 0 - CACCAAGTGTCTCACCACTACG -MN908947.3 841 863 varskip-0317-1_03_LEFT 0 + CCTGATGGCTACCCTCTTGAGT -MN908947.3 976 998 varskip-0317-1_02_RIGHT 1 - AACGTTCCGTGTACCAAGCAAT -MN908947.3 1277 1299 varskip-0317-1_04_LEFT 1 + AAGCCACTTGCGAATTTTGTGG -MN908947.3 1402 1424 varskip-0317-1_03_RIGHT 0 - ATTCGGCAAGACTATGCTCAGG -MN908947.3 1695 1717 varskip-0317-1_05_LEFT 0 + GGCATCTTTTTCTGCTTCCACA -MN908947.3 1821 1844 varskip-0317-1_04_RIGHT 1 - TCTGTTCACCAATATTCCAGGCA -MN908947.3 2061 2086 varskip-0317-1_06_LEFT 1 + CTACATTACAGGTGGTGTTGTTCAG -MN908947.3 2228 2250 varskip-0317-1_05_RIGHT 0 - CCACCGACAATTTCACAAGCAC -MN908947.3 2483 2508 varskip-0317-1_07_LEFT 0 + TCTTCTTAGAGGGAGAAACACTTCC -MN908947.3 2621 2643 varskip-0317-1_06_RIGHT 1 - ATTTCGAGCAACATAAGCCCGT -MN908947.3 2923 2947 varskip-0317-1_08_LEFT 1 + TCTGAATTACTTACACCACTGGGC -MN908947.3 3043 3067 varskip-0317-1_07_RIGHT 0 - ACCTTCTTCTTCATCCTCATCTGG -MN908947.3 3326 3355 varskip-0317-1_09_LEFT 0 + AGACTATTGAAGTGAATAGTTTTAGTGGT -MN908947.3 3470 3492 varskip-0317-1_08_RIGHT 1 - TTTAAGGCTCCTGCAACACCTC -MN908947.3 3753 3778 varskip-0317-1_10_LEFT 1 + AGTTTGTGTAGATACTGTTCGCACA -MN908947.3 3887 3915 varskip-0317-1_09_RIGHT 0 - TCAGTTATAAATGGCTTAACTTCCTCTT -MN908947.3 4154 4180 varskip-0317-1_11_LEFT_alt1 0 + CTGCTGTGGTTATACCTACTAAAAAG -MN908947.3 4296 4322 varskip-0317-1_10_RIGHT 1 - AGGCACTTTTACACTTTTTAAGCACT -MN908947.3 4594 4617 varskip-0317-1_12_LEFT 1 + ACTCTTGTTACAATGCCACTTGG -MN908947.3 4714 4743 varskip-0317-1_11_RIGHT 0 - GAAGAAGTAAGATAACCATTATACGCTGT -MN908947.3 5006 5028 varskip-0317-1_13_LEFT 0 + CGCAAGTTGTGGACATGTCAAT -MN908947.3 5145 5168 varskip-0317-1_12_RIGHT 1 - AGTACTCAAAAGCCTCAACACGT -MN908947.3 5340 5366 varskip-0317-1_14_LEFT 1 + ACCTGCTCTACAAGATGCTTATTACA -MN908947.3 5555 5580 varskip-0317-1_13_RIGHT_alt1 0 - CCCATGTACATAACAGCTTCTACAC -MN908947.3 5794 5817 varskip-0317-1_15_LEFT 0 + ACTTTGTATTGCATAGACGGTGC -MN908947.3 5914 5939 varskip-0317-1_14_RIGHT 1 - TTTCTGTACAAACAACACCATCCAA -MN908947.3 6217 6245 varskip-0317-1_16_LEFT 1 + TTGTTACATAAACCTATTGTTTGGCATG -MN908947.3 6341 6363 varskip-0317-1_15_RIGHT 0 - GCGTCCTCTGACTTCAGTACAT -MN908947.3 6561 6594 varskip-0317-1_17_LEFT 0 + TGTAGACAATTCTAGTCTTACTATTAAGAAACC -MN908947.3 6749 6776 varskip-0317-1_16_RIGHT 1 - AAGGCATATAATTAGTACAAACACGGT -MN908947.3 7000 7022 varskip-0317-1_18_LEFT 1 + TCAACCGCTGCTTTAGGTGTTT -MN908947.3 7124 7151 varskip-0317-1_17_RIGHT_alt1 0 - CTAAACCACTAAGACAAACACTACAAG -MN908947.3 7403 7429 varskip-0317-1_19_LEFT 0 + TGGTTAGAATGTACATCTTCTTTGCA -MN908947.3 7547 7574 varskip-0317-1_18_RIGHT 1 - AGACATAAAAGGACCTTCTAACACCAT -MN908947.3 7836 7861 varskip-0317-1_20_LEFT 1 + AGACAACCTGAGAGCTAATAACACT -MN908947.3 7984 8007 varskip-0317-1_19_RIGHT_alt1 0 - CCAACATCAGACACTAATGCCTG -MN908947.3 8245 8269 varskip-0317-1_21_LEFT 0 + TCTGACATAGAAGTTACTGGCGAT -MN908947.3 8384 8409 varskip-0317-1_20_RIGHT 1 - ACGTTCCATATCAAAGCAATGTTGT -MN908947.3 8685 8709 varskip-0317-1_22_LEFT 1 + AGGATACAAGGCTATTGATGGTGG -MN908947.3 8818 8843 varskip-0317-1_21_RIGHT_alt1 0 - TTGTTATGACTGCAGCAATCAATGG -MN908947.3 9099 9121 varskip-0317-1_23_LEFT 0 + TGAAAGTTTACGCCCTGACACA -MN908947.3 9221 9243 varskip-0317-1_22_RIGHT 1 - TCTGATCTTTCACAAGTGCCGT -MN908947.3 9478 9502 varskip-0317-1_24_LEFT 1 + GGTGAATACAGTCATGTAGTTGCC -MN908947.3 9644 9667 varskip-0317-1_23_RIGHT 0 - AGGTGTGAACATAACCATCCACT -MN908947.3 9842 9865 varskip-0317-1_25_LEFT 0 + TGCGTAGTGATGTGCTATTACCT -MN908947.3 10039 10061 varskip-0317-1_24_RIGHT 1 - AACCACTCTGCAAAACAGCTGA -MN908947.3 10269 10293 varskip-0317-1_26_LEFT 1 + TGTTCAACTCAGGGTTATTGGACA -MN908947.3 10396 10422 varskip-0317-1_25_RIGHT_alt1 0 - GATGGTGAACCATTGTAACAAGCTAA -MN908947.3 10696 10719 varskip-0317-1_27_LEFT 0 + GGAGACAGGTGGTTTCTCAATCG -MN908947.3 10816 10838 varskip-0317-1_26_RIGHT 1 - AAACGGCAATTCCAGTTTGAGC -MN908947.3 11092 11116 varskip-0317-1_28_LEFT 1 + GCCTTTTTACCTTTTGCTATGGGT -MN908947.3 11243 11268 varskip-0317-1_27_RIGHT 0 - TCCAACCATGTCATAATACGCATCA -MN908947.3 11371 11393 varskip-0317-1_29_LEFT 0 + GATGGTGCTAGGAGAGTGTGGA -MN908947.3 11647 11670 varskip-0317-1_28_RIGHT 1 - CGGTTGAGTAAACAAAAGAGGCC -MN908947.3 11824 11851 varskip-0317-1_30_LEFT_alt1 1 + AAAGTAGCCACTGTACAGTCTAAAATG -MN908947.3 11921 11943 varskip-0317-1_29_RIGHT 0 - TGGACACATTGAGCCCACAATT -MN908947.3 12201 12226 varskip-0317-1_31_LEFT 0 + GTTGAAGAAGTCTTTGAATGTGGCT -MN908947.3 12329 12353 varskip-0317-1_30_RIGHT 1 - GCATAGCACTAGTAACTTTTGCCC -MN908947.3 12632 12656 varskip-0317-1_32_LEFT 1 + CATGGCCTCTTATTGTAACAGCTT -MN908947.3 12752 12774 varskip-0317-1_31_RIGHT 0 - GCTAACGCATTGTCATCAGTGC -MN908947.3 13034 13058 varskip-0317-1_33_LEFT_alt1 0 + CAACAGAAGTGCCTGCCAATTCAA -MN908947.3 13166 13188 varskip-0317-1_32_RIGHT 1 - ATTGCCTGACCAGTACCAGTGT -MN908947.3 13479 13501 varskip-0317-1_34_LEFT 1 + GTAAGTGCAGCCCGTCTTACAC -MN908947.3 13599 13621 varskip-0317-1_33_RIGHT 0 - CGTCCTTTTCTTGGAAGCGACA -MN908947.3 13874 13901 varskip-0317-1_35_LEFT 0 + ACTTGTCACATACAATTGTTGTGATGA -MN908947.3 14009 14031 varskip-0317-1_34_RIGHT 1 - TCGCATGGCATCACAGAATTGT -MN908947.3 14290 14319 varskip-0317-1_36_LEFT 1 + ACCGTTATTTTAAATATTGGGATCAGACA -MN908947.3 14417 14444 varskip-0317-1_35_RIGHT 0 - ACAAATATTTTTCTCACTAGTGGTCCA -MN908947.3 14651 14675 varskip-0317-1_37_LEFT 0 + TGTTGCTTTTCAAACTGTCAAACC -MN908947.3 14826 14855 varskip-0317-1_36_RIGHT 1 - ACAAATAGTAGTTGTCTGATATCACACAT -MN908947.3 15064 15091 varskip-0317-1_38_LEFT 1 + TGAATCTTAAGTATGCCATTAGTGCAA -MN908947.3 15191 15217 varskip-0317-1_37_RIGHT 0 - TGCTTGTTCCAATTACTACAGTAGCT -MN908947.3 15428 15450 varskip-0317-1_39_LEFT_alt1 0 + GAGTGAAATGGTCATGTGTGGC -MN908947.3 15598 15622 varskip-0317-1_38_RIGHT 1 - AAAGTCTGTGTTGTAAATTGCGGA -MN908947.3 15862 15887 varskip-0317-1_40_LEFT 1 + GACCTCATGAATTTTGCTCTCAACA -MN908947.3 16007 16029 varskip-0317-1_39_RIGHT 0 - AGCTAAAGACACGAACCGTTCA -MN908947.3 16277 16299 varskip-0317-1_41_LEFT 0 + AAGATGTGGTGCTTGCATACGT -MN908947.3 16416 16443 varskip-0317-1_40_RIGHT 1 - GCTCATACCTCCTAAGTAAAGTTGAGT -MN908947.3 16689 16711 varskip-0317-1_42_LEFT 1 + GCTACTGTACGTGAAGTGCTGT -MN908947.3 16842 16865 varskip-0317-1_41_RIGHT 0 - ACAACAGCATCACCATAGTCACC -MN908947.3 17057 17082 varskip-0317-1_43_LEFT 0 + GCAAAAGTATTCTACACTCCAGGGA -MN908947.3 17246 17266 varskip-0317-1_42_RIGHT 1 - CAAAACAATCTACACGAGCACG -MN908947.3 17476 17500 varskip-0317-1_44_LEFT 1 + AGGGCACACTAGAACCAGAATATT -MN908947.3 17621 17646 varskip-0317-1_43_RIGHT 0 - TTGAGCTGATTTGTCTTTATGTGCT -MN908947.3 17889 17915 varskip-0317-1_45_LEFT 0 + ACAGCTCACTCTTGTAATGTAAACAG -MN908947.3 18033 18059 varskip-0317-1_44_RIGHT 1 - AGTCCTGTTACATTTTCAGCTTGTAA -MN908947.3 18311 18333 varskip-0317-1_46_LEFT 1 + CGAGGGGTGTCATGCTACTAGA -MN908947.3 18441 18463 varskip-0317-1_45_RIGHT 0 - GCGGTGGTTTAGCACTAACTCT -MN908947.3 18712 18737 varskip-0317-1_47_LEFT 0 + CCTGTTGGCATCATTCTATTGGATT -MN908947.3 18852 18876 varskip-0317-1_46_RIGHT 1 - ACACCTAGTCATGATTGCATCACA -MN908947.3 19092 19114 varskip-0317-1_48_LEFT 1 + GATGCACAGCCTTGTAGTGACA -MN908947.3 19247 19273 varskip-0317-1_47_RIGHT_alt1 0 - GCAAGTTAAGGTTAGATAGCACTCTA -MN908947.3 19488 19515 varskip-0317-1_49_LEFT 0 + TGTAGACATCATGCTAATGAGTACAGA -MN908947.3 19641 19669 varskip-0317-1_48_RIGHT 1 - CATCAAAGTGTCCCTTATTTACAACATT -MN908947.3 19885 19911 varskip-0317-1_50_LEFT_alt1 1 + AAAGAGATGCTCCAGCACATATATCT -MN908947.3 20037 20064 varskip-0317-1_49_RIGHT 0 - AACACTACCTTCTGTAATAAGAACACC -MN908947.3 20340 20366 varskip-0317-1_51_LEFT 0 + AGTCATAGTCAGTTAGGTGGTTTACA -MN908947.3 20462 20484 varskip-0317-1_50_RIGHT 1 - AGATGAACCTGTTTGCGCATCT -MN908947.3 20766 20792 varskip-0317-1_52_LEFT 1 + CCTAAAGGCATAATGATGAATGTCGC -MN908947.3 20890 20912 varskip-0317-1_51_RIGHT 0 - AAAACAGCTGTACCTGGTGCAA -MN908947.3 21194 21219 varskip-0317-1_53_LEFT_alt1 0 + TCTTTATAAGCTCATGGGACACTTC -MN908947.3 21314 21338 varskip-0317-1_52_RIGHT 1 - TTTGCATGCATGACATAACCATCT -MN908947.3 21537 21566 varskip-0317-1_54_LEFT 1 + GTTCTTGTTAACAACTAAACGAACAATGT -MN908947.3 21724 21753 varskip-0317-1_53_RIGHT 0 - CAAGTAACATTGGAAAAGAAAGGTAAGAA -MN908947.3 21926 21955 varskip-0317-1_55_LEFT 0 + ACGCTACTAATGTTGTTATTAAAGTCTGT -MN908947.3 22091 22113 varskip-0317-1_54_RIGHT 1 - CCCTGTTTTCCTTCAAGGTCCA -MN908947.3 22347 22373 varskip-0317-1_56_LEFT 1 + TGCAGCTTATTATGTGGGTTATCTTC -MN908947.3 22480 22510 varskip-0317-1_55_RIGHT 0 - AGAAGTTTGATAGATTCCTTTTTCTACAGT -MN908947.3 22749 22776 varskip-0317-1_57_LEFT 0 + TGCAGATTCATTTGTAATTAGAGGTGA -MN908947.3 22879 22907 varskip-0317-1_56_RIGHT 1 - AATTACCACCAACCTTAGAATCAAGATT -MN908947.3 23122 23144 varskip-0317-1_58_LEFT 1 + CCAGCAACTGTTTGTGGACCTA -MN908947.3 23288 23310 varskip-0317-1_57_RIGHT 0 - TCAAGTGTCTGTGGATCACGGA -MN908947.3 23545 23567 varskip-0317-1_59_LEFT 0 + TGTGACATACCCATTGGTGCAG -MN908947.3 23681 23708 varskip-0317-1_58_RIGHT 1 - TGGGTATGGCAATAGAGTTATTAGAGT -MN908947.3 23979 24002 varskip-0317-1_60_LEFT 1 + ACCAGATCCATCAAAACCAAGCA -MN908947.3 24112 24134 varskip-0317-1_59_RIGHT 0 - GGCCGTTAAACTTTTGTGCACA -MN908947.3 24375 24397 varskip-0317-1_61_LEFT 0 + TTCTTCCACAGCAAGTGCACTT -MN908947.3 24518 24541 varskip-0317-1_60_RIGHT 1 - AATTTGCACTTCAGCCTCAACTT -MN908947.3 24789 24811 varskip-0317-1_62_LEFT 1 + AACTGCTCCTGCCATTTGTCAT -MN908947.3 24924 24948 varskip-0317-1_61_RIGHT 0 - ACAACATCACAGTTACCAGACACA -MN908947.3 25171 25200 varskip-0317-1_63_LEFT 0 + GGAAAGTATGAGCAGTATATAAAATGGCC -MN908947.3 25331 25353 varskip-0317-1_62_RIGHT 1 - ACTGGCTCAGAGTCGTCTTCAT -MN908947.3 25575 25600 varskip-0317-1_64_LEFT 1 + ATCATAACCCTCAAAAAGAGATGGC -MN908947.3 25725 25754 varskip-0317-1_63_RIGHT 0 - ACAAAGTTTATACTCTGCAAGAAGTAGAC -MN908947.3 25970 25995 varskip-0317-1_65_LEFT_alt1 0 + GGAATCTGGAGTAAAAGACTGTGTT -MN908947.3 26120 26143 varskip-0317-1_64_RIGHT 1 - CGTCGATTGTGTGAATTTGGACA -MN908947.3 26359 26381 varskip-0317-1_66_LEFT 1 + TGTGTGCGTACTGCTGCAATAT -MN908947.3 26497 26525 varskip-0317-1_65_RIGHT 0 - CATGGCTAAAATTAAAGTTCCAAACAGA -MN908947.3 26706 26728 varskip-0317-1_67_LEFT 0 + TAGCTTGTTTTGTGCTTGCTGC -MN908947.3 26905 26927 varskip-0317-1_66_RIGHT 1 - TTCTAGAAGCGGTCTGGTCAGA -MN908947.3 27081 27103 varskip-0317-1_68_LEFT 1 + TAGCAGGTGACTCAGGTTTTGC -MN908947.3 27256 27283 varskip-0317-1_67_RIGHT 0 - TCCAAATGGAAACTTTAAAAGTCCTCA -MN908947.3 27485 27511 varskip-0317-1_69_LEFT_alt1 0 + AAAAGAACCTTGCTCTTCTGGAACAT -MN908947.3 27647 27671 varskip-0317-1_68_RIGHT 1 - ACTTCCTCTTGTCTGATGAACAGT -MN908947.3 27835 27859 varskip-0317-1_70_LEFT 1 + CTTTTGGTTCTCACTTGAACTGCA -MN908947.3 28051 28076 varskip-0317-1_69_RIGHT 0 - GCACAATTCAATTAAAGGTGCTGAT -MN908947.3 28219 28243 varskip-0317-1_71_LEFT 0 + AGAGTATCATGACGTTCGTGTTGT -MN908947.3 28380 28400 varskip-0317-1_70_RIGHT 1 - GGGGCCGACGTTGTTTTGAT -MN908947.3 28627 28649 varskip-0317-1_72_LEFT 1 + GCTGGACTTCCCTATGGTGCTA -MN908947.3 28783 28805 varskip-0317-1_71_RIGHT 0 - CTCTGCTCCCTTCTGCGTAGAA -MN908947.3 29062 29088 varskip-0317-1_73_LEFT 0 + GCCACTAAAGCATACAATGTAACACA -MN908947.3 29203 29225 varskip-0317-1_72_RIGHT 1 - ACATTCCGAAGAACGCTGAAGC -MN908947.3 29270 29292 varskip-0317-1_74_LEFT 1 + ACACAGGTGCCATCAAATTGGA -MN908947.3 29617 29644 varskip-0317-1_73_RIGHT 0 - TTGTGCTATGTAGTTACGAGAATTCAT -MN908947.3 29799 29831 varskip-0317-1_74_RIGHT 1 - GCACTACTAAAATTAATTTTACACATTAGGGC diff --git a/sars-cov-2/varskip/vss1a/reference.fasta b/sars-cov-2/varskip/vss1a/reference.fasta deleted file mode 100644 index 4072957..0000000 --- a/sars-cov-2/varskip/vss1a/reference.fasta +++ /dev/null @@ -1,500 +0,0 @@ ->MN908947.3 -ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT -GTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACT -CACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC -TTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTT -CGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAAC -ACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGG -AGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATGGCACTTGTGG -CTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAA -ACGTTCGGATGCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACT -CGAAGGCATTCAGTACGGTCGTAGTGGTGAGACACTTGGTGTCCTTGTCCCTCATGTGGG -CGAAATACCAGTGGCTTACCGCAAGGTTCTTCTTCGTAAGAACGGTAATAAAGGAGCTGG -TGGCCATAGTTACGGCGCCGATCTAAAGTCATTTGACTTAGGCGACGAGCTTGGCACTGA -TCCTTATGAAGATTTTCAAGAAAACTGGAACACTAAACATAGCAGTGGTGTTACCCGTGA -ACTCATGCGTGAGCTTAACGGAGGGGCATACACTCGCTATGTCGATAACAACTTCTGTGG -CCCTGATGGCTACCCTCTTGAGTGCATTAAAGACCTTCTAGCACGTGCTGGTAAAGCTTC -ATGCACTTTGTCCGAACAACTGGACTTTATTGACACTAAGAGGGGTGTATACTGCTGCCG -TGAACATGAGCATGAAATTGCTTGGTACACGGAACGTTCTGAAAAGAGCTATGAATTGCA -GACACCTTTTGAAATTAAATTGGCAAAGAAATTTGACACCTTCAATGGGGAATGTCCAAA -TTTTGTATTTCCCTTAAATTCCATAATCAAGACTATTCAACCAAGGGTTGAAAAGAAAAA -GCTTGATGGCTTTATGGGTAGAATTCGATCTGTCTATCCAGTTGCGTCACCAAATGAATG -CAACCAAATGTGCCTTTCAACTCTCATGAAGTGTGATCATTGTGGTGAAACTTCATGGCA -GACGGGCGATTTTGTTAAAGCCACTTGCGAATTTTGTGGCACTGAGAATTTGACTAAAGA -AGGTGCCACTACTTGTGGTTACTTACCCCAAAATGCTGTTGTTAAAATTTATTGTCCAGC -ATGTCACAATTCAGAAGTAGGACCTGAGCATAGTCTTGCCGAATACCATAATGAATCTGG -CTTGAAAACCATTCTTCGTAAGGGTGGTCGCACTATTGCCTTTGGAGGCTGTGTGTTCTC -TTATGTTGGTTGCCATAACAAGTGTGCCTATTGGGTTCCACGTGCTAGCGCTAACATAGG -TTGTAACCATACAGGTGTTGTTGGAGAAGGTTCCGAAGGTCTTAATGACAACCTTCTTGA -AATACTCCAAAAAGAGAAAGTCAACATCAATATTGTTGGTGACTTTAAACTTAATGAAGA -GATCGCCATTATTTTGGCATCTTTTTCTGCTTCCACAAGTGCTTTTGTGGAAACTGTGAA -AGGTTTGGATTATAAAGCATTCAAACAAATTGTTGAATCCTGTGGTAATTTTAAAGTTAC -AAAAGGAAAAGCTAAAAAAGGTGCCTGGAATATTGGTGAACAGAAATCAATACTGAGTCC -TCTTTATGCATTTGCATCAGAGGCTGCTCGTGTTGTACGATCAATTTTCTCCCGCACTCT -TGAAACTGCTCAAAATTCTGTGCGTGTTTTACAGAAGGCCGCTATAACAATACTAGATGG -AATTTCACAGTATTCACTGAGACTCATTGATGCTATGATGTTCACATCTGATTTGGCTAC -TAACAATCTAGTTGTAATGGCCTACATTACAGGTGGTGTTGTTCAGTTGACTTCGCAGTG -GCTAACTAACATCTTTGGCACTGTTTATGAAAAACTCAAACCCGTCCTTGATTGGCTTGA -AGAGAAGTTTAAGGAAGGTGTAGAGTTTCTTAGAGACGGTTGGGAAATTGTTAAATTTAT -CTCAACCTGTGCTTGTGAAATTGTCGGTGGACAAATTGTCACCTGTGCAAAGGAAATTAA -GGAGAGTGTTCAGACATTCTTTAAGCTTGTAAATAAATTTTTGGCTTTGTGTGCTGACTC -TATCATTATTGGTGGAGCTAAACTTAAAGCCTTGAATTTAGGTGAAACATTTGTCACGCA -CTCAAAGGGATTGTACAGAAAGTGTGTTAAATCCAGAGAAGAAACTGGCCTACTCATGCC -TCTAAAAGCCCCAAAAGAAATTATCTTCTTAGAGGGAGAAACACTTCCCACAGAAGTGTT -AACAGAGGAAGTTGTCTTGAAAACTGGTGATTTACAACCATTAGAACAACCTACTAGTGA -AGCTGTTGAAGCTCCATTGGTTGGTACACCAGTTTGTATTAACGGGCTTATGTTGCTCGA -AATCAAAGACACAGAAAAGTACTGTGCCCTTGCACCTAATATGATGGTAACAAACAATAC -CTTCACACTCAAAGGCGGTGCACCAACAAAGGTTACTTTTGGTGATGACACTGTGATAGA -AGTGCAAGGTTACAAGAGTGTGAATATCACTTTTGAACTTGATGAAAGGATTGATAAAGT -ACTTAATGAGAAGTGCTCTGCCTATACAGTTGAACTCGGTACAGAAGTAAATGAGTTCGC -CTGTGTTGTGGCAGATGCTGTCATAAAAACTTTGCAACCAGTATCTGAATTACTTACACC -ACTGGGCATTGATTTAGATGAGTGGAGTATGGCTACATACTACTTATTTGATGAGTCTGG -TGAGTTTAAATTGGCTTCACATATGTATTGTTCTTTCTACCCTCCAGATGAGGATGAAGA -AGAAGGTGATTGTGAAGAAGAAGAGTTTGAGCCATCAACTCAATATGAGTATGGTACTGA -AGATGATTACCAAGGTAAACCTTTGGAATTTGGTGCCACTTCTGCTGCTCTTCAACCTGA -AGAAGAGCAAGAAGAAGATTGGTTAGATGATGATAGTCAACAAACTGTTGGTCAACAAGA -CGGCAGTGAGGACAATCAGACAACTACTATTCAAACAATTGTTGAGGTTCAACCTCAATT -AGAGATGGAACTTACACCAGTTGTTCAGACTATTGAAGTGAATAGTTTTAGTGGTTATTT -AAAACTTACTGACAATGTATACATTAAAAATGCAGACATTGTGGAAGAAGCTAAAAAGGT -AAAACCAACAGTGGTTGTTAATGCAGCCAATGTTTACCTTAAACATGGAGGAGGTGTTGC -AGGAGCCTTAAATAAGGCTACTAACAATGCCATGCAAGTTGAATCTGATGATTACATAGC -TACTAATGGACCACTTAAAGTGGGTGGTAGTTGTGTTTTAAGCGGACACAATCTTGCTAA -ACACTGTCTTCATGTTGTCGGCCCAAATGTTAACAAAGGTGAAGACATTCAACTTCTTAA -GAGTGCTTATGAAAATTTTAATCAGCACGAAGTTCTACTTGCACCATTATTATCAGCTGG -TATTTTTGGTGCTGACCCTATACATTCTTTAAGAGTTTGTGTAGATACTGTTCGCACAAA -TGTCTACTTAGCTGTCTTTGATAAAAATCTCTATGACAAACTTGTTTCAAGCTTTTTGGA -AATGAAGAGTGAAAAGCAAGTTGAACAAAAGATCGCTGAGATTCCTAAAGAGGAAGTTAA -GCCATTTATAACTGAAAGTAAACCTTCAGTTGAACAGAGAAAACAAGATGATAAGAAAAT -CAAAGCTTGTGTTGAAGAAGTTACAACAACTCTGGAAGAAACTAAGTTCCTCACAGAAAA -CTTGTTACTTTATATTGACATTAATGGCAATCTTCATCCAGATTCTGCCACTCTTGTTAG -TGACATTGACATCACTTTCTTAAAGAAAGATGCTCCATATATAGTGGGTGATGTTGTTCA -AGAGGGTGTTTTAACTGCTGTGGTTATACCTACTAAAAAGGCTGGTGGCACTACTGAAAT -GCTAGCGAAAGCTTTGAGAAAAGTGCCAACAGACAATTATATAACCACTTACCCGGGTCA -GGGTTTAAATGGTTACACTGTAGAGGAGGCAAAGACAGTGCTTAAAAAGTGTAAAAGTGC -CTTTTACATTCTACCATCTATTATCTCTAATGAGAAGCAAGAAATTCTTGGAACTGTTTC -TTGGAATTTGCGAGAAATGCTTGCACATGCAGAAGAAACACGCAAATTAATGCCTGTCTG -TGTGGAAACTAAAGCCATAGTTTCAACTATACAGCGTAAATATAAGGGTATTAAAATACA -AGAGGGTGTGGTTGATTATGGTGCTAGATTTTACTTTTACACCAGTAAAACAACTGTAGC -GTCACTTATCAACACACTTAACGATCTAAATGAAACTCTTGTTACAATGCCACTTGGCTA -TGTAACACATGGCTTAAATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCC -AGCTACAGTTTCTGTTTCTTCACCTGATGCTGTTACAGCGTATAATGGTTATCTTACTTC -TTCTTCTAAAACACCTGAAGAACATTTTATTGAAACCATCTCACTTGCTGGTTCCTATAA -AGATTGGTCCTATTCTGGACAATCTACACAACTAGGTATAGAATTTCTTAAGAGAGGTGA -TAAAAGTGTATATTACACTAGTAATCCTACCACATTCCACCTAGATGGTGAAGTTATCAC -CTTTGACAATCTTAAGACACTTCTTTCTTTGAGAGAAGTGAGGACTATTAAGGTGTTTAC -AACAGTAGACAACATTAACCTCCACACGCAAGTTGTGGACATGTCAATGACATATGGACA -ACAGTTTGGTCCAACTTATTTGGATGGAGCTGATGTTACTAAAATAAAACCTCATAATTC -ACATGAAGGTAAAACATTTTATGTTTTACCTAATGATGACACTCTACGTGTTGAGGCTTT -TGAGTACTACCACACAACTGATCCTAGTTTTCTGGGTAGGTACATGTCAGCATTAAATCA -CACTAAAAAGTGGAAATACCCACAAGTTAATGGTTTAACTTCTATTAAATGGGCAGATAA -CAACTGTTATCTTGCCACTGCATTGTTAACACTCCAACAAATAGAGTTGAAGTTTAATCC -ACCTGCTCTACAAGATGCTTATTACAGAGCAAGGGCTGGTGAAGCTGCTAACTTTTGTGC -ACTTATCTTAGCCTACTGTAATAAGACAGTAGGTGAGTTAGGTGATGTTAGAGAAACAAT -GAGTTACTTGTTTCAACATGCCAATTTAGATTCTTGCAAAAGAGTCTTGAACGTGGTGTG -TAAAACTTGTGGACAACAGCAGACAACCCTTAAGGGTGTAGAAGCTGTTATGTACATGGG -CACACTTTCTTATGAACAATTTAAGAAAGGTGTTCAGATACCTTGTACGTGTGGTAAACA -AGCTACAAAATATCTAGTACAACAGGAGTCACCTTTTGTTATGATGTCAGCACCACCTGC -TCAGTATGAACTTAAGCATGGTACATTTACTTGTGCTAGTGAGTACACTGGTAATTACCA -GTGTGGTCACTATAAACATATAACTTCTAAAGAAACTTTGTATTGCATAGACGGTGCTTT -ACTTACAAAGTCCTCAGAATACAAAGGTCCTATTACGGATGTTTTCTACAAAGAAAACAG -TTACACAACAACCATAAAACCAGTTACTTATAAATTGGATGGTGTTGTTTGTACAGAAAT -TGACCCTAAGTTGGACAATTATTATAAGAAAGACAATTCTTATTTCACAGAGCAACCAAT -TGATCTTGTACCAAACCAACCATATCCAAACGCAAGCTTCGATAATTTTAAGTTTGTATG -TGATAATATCAAATTTGCTGATGATTTAAACCAGTTAACTGGTTATAAGAAACCTGCTTC -AAGAGAGCTTAAAGTTACATTTTTCCCTGACTTAAATGGTGATGTGGTGGCTATTGATTA -TAAACACTACACACCCTCTTTTAAGAAAGGAGCTAAATTGTTACATAAACCTATTGTTTG -GCATGTTAACAATGCAACTAATAAAGCCACGTATAAACCAAATACCTGGTGTATACGTTG -TCTTTGGAGCACAAAACCAGTTGAAACATCAAATTCGTTTGATGTACTGAAGTCAGAGGA -CGCGCAGGGAATGGATAATCTTGCCTGCGAAGATCTAAAACCAGTCTCTGAAGAAGTAGT -GGAAAATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGT -AGGAGACATTATACTTAAACCAGCAAATAATAGTTTAAAAATTACAGAAGAGGTTGGCCA -CACAGATCTAATGGCTGCTTATGTAGACAATTCTAGTCTTACTATTAAGAAACCTAATGA -ATTATCTAGAGTATTAGGTTTGAAAACCCTTGCTACTCATGGTTTAGCTGCTGTTAATAG -TGTCCCTTGGGATACTATAGCTAATTATGCTAAGCCTTTTCTTAACAAAGTTGTTAGTAC -AACTACTAACATAGTTACACGGTGTTTAAACCGTGTTTGTACTAATTATATGCCTTATTT -CTTTACTTTATTGCTACAATTGTGTACTTTTACTAGAAGTACAAATTCTAGAATTAAAGC -ATCTATGCCGACTACTATAGCAAAGAATACTGTTAAGAGTGTCGGTAAATTTTGTCTAGA -GGCTTCATTTAATTATTTGAAGTCACCTAATTTTTCTAAACTGATAAATATTATAATTTG -GTTTTTACTATTAAGTGTTTGCCTAGGTTCTTTAATCTACTCAACCGCTGCTTTAGGTGT -TTTAATGTCTAATTTAGGCATGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAA -CTCTACTAATGTCACTATTGCAACCTACTGTACTGGTTCTATACCTTGTAGTGTTTGTCT -TAGTGGTTTAGATTCTTTAGACACCTATCCTTCTTTAGAAACTATACAAATTACCATTTC -ATCTTTTAAATGGGATTTAACTGCTTTTGGCTTAGTTGCAGAGTGGTTTTTGGCATATAT -TCTTTTCACTAGGTTTTTCTATGTACTTGGATTGGCTGCAATCATGCAATTGTTTTTCAG -CTATTTTGCAGTACATTTTATTAGTAATTCTTGGCTTATGTGGTTAATAATTAATCTTGT -ACAAATGGCCCCGATTTCAGCTATGGTTAGAATGTACATCTTCTTTGCATCATTTTATTA -TGTATGGAAAAGTTATGTGCATGTTGTAGACGGTTGTAATTCATCAACTTGTATGATGTG -TTACAAACGTAATAGAGCAACAAGAGTCGAATGTACAACTATTGTTAATGGTGTTAGAAG -GTCCTTTTATGTCTATGCTAATGGAGGTAAAGGCTTTTGCAAACTACACAATTGGAATTG -TGTTAATTGTGATACATTCTGTGCTGGTAGTACATTTATTAGTGATGAAGTTGCGAGAGA -CTTGTCACTACAGTTTAAAAGACCAATAAATCCTACTGACCAGTCTTCTTACATCGTTGA -TAGTGTTACAGTGAAGAATGGTTCCATCCATCTTTACTTTGATAAAGCTGGTCAAAAGAC -TTATGAAAGACATTCTCTCTCTCATTTTGTTAACTTAGACAACCTGAGAGCTAATAACAC -TAAAGGTTCATTGCCTATTAATGTTATAGTTTTTGATGGTAAATCAAAATGTGAAGAATC -ATCTGCAAAATCAGCGTCTGTTTACTACAGTCAGCTTATGTGTCAACCTATACTGTTACT -AGATCAGGCATTAGTGTCTGATGTTGGTGATAGTGCGGAAGTTGCAGTTAAAATGTTTGA -TGCTTACGTTAATACGTTTTCATCAACTTTTAACGTACCAATGGAAAAACTCAAAACACT -AGTTGCAACTGCAGAAGCTGAACTTGCAAAGAATGTGTCCTTAGACAATGTCTTATCTAC -TTTTATTTCAGCAGCTCGGCAAGGGTTTGTTGATTCAGATGTAGAAACTAAAGATGTTGT -TGAATGTCTTAAATTGTCACATCAATCTGACATAGAAGTTACTGGCGATAGTTGTAATAA -CTATATGCTCACCTATAACAAAGTTGAAAACATGACACCCCGTGACCTTGGTGCTTGTAT -TGACTGTAGTGCGCGTCATATTAATGCGCAGGTAGCAAAAAGTCACAACATTGCTTTGAT -ATGGAACGTTAAAGATTTCATGTCATTGTCTGAACAACTACGAAAACAAATACGTAGTGC -TGCTAAAAAGAATAACTTACCTTTTAAGTTGACATGTGCAACTACTAGACAAGTTGTTAA -TGTTGTAACAACAAAGATAGCACTTAAGGGTGGTAAAATTGTTAATAATTGGTTGAAGCA -GTTAATTAAAGTTACACTTGTGTTCCTTTTTGTTGCTGCTATTTTCTATTTAATAACACC -TGTTCATGTCATGTCTAAACATACTGACTTTTCAAGTGAAATCATAGGATACAAGGCTAT -TGATGGTGGTGTCACTCGTGACATAGCATCTACAGATACTTGTTTTGCTAACAAACATGC -TGATTTTGACACATGGTTTAGCCAGCGTGGTGGTAGTTATACTAATGACAAAGCTTGCCC -ATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCAC -GATATTACGCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGT -TGGTAACATCTGTTACACACCATCAAAACTTATAGAGTACACTGACTTTGCAACATCAGC -TTGTGTTTTGGCTGCTGAATGTACAATTTTTAAAGATGCTTCTGGTAAGCCAGTACCATA -TTGTTATGATACCAATGTACTAGAAGGTTCTGTTGCTTATGAAAGTTTACGCCCTGACAC -ACGTTATGTGCTCATGGATGGCTCTATTATTCAATTTCCTAACACCTACCTTGAAGGTTC -TGTTAGAGTGGTAACAACTTTTGATTCTGAGTACTGTAGGCACGGCACTTGTGAAAGATC -AGAAGCTGGTGTTTGTGTATCTACTAGTGGTAGATGGGTACTTAACAATGATTATTACAG -ATCTTTACCAGGAGTTTTCTGTGGTGTAGATGCTGTAAATTTACTTACTAATATGTTTAC -ACCACTAATTCAACCTATTGGTGCTTTGGACATATCAGCATCTATAGTAGCTGGTGGTAT -TGTAGCTATCGTAGTAACATGCCTTGCCTACTATTTTATGAGGTTTAGAAGAGCTTTTGG -TGAATACAGTCATGTAGTTGCCTTTAATACTTTACTATTCCTTATGTCATTCACTGTACT -CTGTTTAACACCAGTTTACTCATTCTTACCTGGTGTTTATTCTGTTATTTACTTGTACTT -GACATTTTATCTTACTAATGATGTTTCTTTTTTAGCACATATTCAGTGGATGGTTATGTT -CACACCTTTAGTACCTTTCTGGATAACAATTGCTTATATCATTTGTATTTCCACAAAGCA -TTTCTATTGGTTCTTTAGTAATTACCTAAAGAGACGTGTAGTCTTTAATGGTGTTTCCTT -TAGTACTTTTGAAGAAGCTGCGCTGTGCACCTTTTTGTTAAATAAAGAAATGTATCTAAA -GTTGCGTAGTGATGTGCTATTACCTCTTACGCAATATAATAGATACTTAGCTCTTTATAA -TAAGTACAAGTATTTTAGTGGAGCAATGGATACAACTAGCTACAGAGAAGCTGCTTGTTG -TCATCTCGCAAAGGCTCTCAATGACTTCAGTAACTCAGGTTCTGATGTTCTTTACCAACC -ACCACAAACCTCTATCACCTCAGCTGTTTTGCAGAGTGGTTTTAGAAAAATGGCATTCCC -ATCTGGTAAAGTTGAGGGTTGTATGGTACAAGTAACTTGTGGTACAACTACACTTAACGG -TCTTTGGCTTGATGACGTAGTTTACTGTCCAAGACATGTGATCTGCACCTCTGAAGACAT -GCTTAACCCTAATTATGAAGATTTACTCATTCGTAAGTCTAATCATAATTTCTTGGTACA -GGCTGGTAATGTTCAACTCAGGGTTATTGGACATTCTATGCAAAATTGTGTACTTAAGCT -TAAGGTTGATACAGCCAATCCTAAGACACCTAAGTATAAGTTTGTTCGCATTCAACCAGG -ACAGACTTTTTCAGTGTTAGCTTGTTACAATGGTTCACCATCTGGTGTTTACCAATGTGC -TATGAGGCCCAATTTCACTATTAAGGGTTCATTCCTTAATGGTTCATGTGGTAGTGTTGG -TTTTAACATAGATTATGACTGTGTCTCTTTTTGTTACATGCACCATATGGAATTACCAAC -TGGAGTTCATGCTGGCACAGACTTAGAAGGTAACTTTTATGGACCTTTTGTTGACAGGCA -AACAGCACAAGCAGCTGGTACGGACACAACTATTACAGTTAATGTTTTAGCTTGGTTGTA -CGCTGCTGTTATAAATGGAGACAGGTGGTTTCTCAATCGATTTACCACAACTCTTAATGA -CTTTAACCTTGTGGCTATGAAGTACAATTATGAACCTCTAACACAAGACCATGTTGACAT -ACTAGGACCTCTTTCTGCTCAAACTGGAATTGCCGTTTTAGATATGTGTGCTTCATTAAA -AGAATTACTGCAAAATGGTATGAATGGACGTACCATATTGGGTAGTGCTTTATTAGAAGA -TGAATTTACACCTTTTGATGTTGTTAGACAATGCTCAGGTGTTACTTTCCAAAGTGCAGT -GAAAAGAACAATCAAGGGTACACACCACTGGTTGTTACTCACAATTTTGACTTCACTTTT -AGTTTTAGTCCAGAGTACTCAATGGTCTTTGTTCTTTTTTTTGTATGAAAATGCCTTTTT -ACCTTTTGCTATGGGTATTATTGCTATGTCTGCTTTTGCAATGATGTTTGTCAAACATAA -GCATGCATTTCTCTGTTTGTTTTTGTTACCTTCTCTTGCCACTGTAGCTTATTTTAATAT -GGTCTATATGCCTGCTAGTTGGGTGATGCGTATTATGACATGGTTGGATATGGTTGATAC -TAGTTTGTCTGGTTTTAAGCTAAAAGACTGTGTTATGTATGCATCAGCTGTAGTGTTACT -AATCCTTATGACAGCAAGAACTGTGTATGATGATGGTGCTAGGAGAGTGTGGACACTTAT -GAATGTCTTGACACTCGTTTATAAAGTTTATTATGGTAATGCTTTAGATCAAGCCATTTC -CATGTGGGCTCTTATAATCTCTGTTACTTCTAACTACTCAGGTGTAGTTACAACTGTCAT -GTTTTTGGCCAGAGGTATTGTTTTTATGTGTGTTGAGTATTGCCCTATTTTCTTCATAAC -TGGTAATACACTTCAGTGTATAATGCTAGTTTATTGTTTCTTAGGCTATTTTTGTACTTG -TTACTTTGGCCTCTTTTGTTTACTCAACCGCTACTTTAGACTGACTCTTGGTGTTTATGA -TTACTTAGTTTCTACACAGGAGTTTAGATATATGAATTCACAGGGACTACTCCCACCCAA -GAATAGCATAGATGCCTTCAAACTCAACATTAAATTGTTGGGTGTTGGTGGCAAACCTTG -TATCAAAGTAGCCACTGTACAGTCTAAAATGTCAGATGTAAAGTGCACATCAGTAGTCTT -ACTCTCAGTTTTGCAACAACTCAGAGTAGAATCATCATCTAAATTGTGGGCTCAATGTGT -CCAGTTACACAATGACATTCTCTTAGCTAAAGATACTACTGAAGCCTTTGAAAAAATGGT -TTCACTACTTTCTGTTTTGCTTTCCATGCAGGGTGCTGTAGACATAAACAAGCTTTGTGA -AGAAATGCTGGACAACAGGGCAACCTTACAAGCTATAGCCTCAGAGTTTAGTTCCCTTCC -ATCATATGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAGCAGGCTGTTGCTAATGGTGA -TTCTGAAGTTGTTCTTAAAAAGTTGAAGAAGTCTTTGAATGTGGCTAAATCTGAATTTGA -CCGTGATGCAGCCATGCAACGTAAGTTGGAAAAGATGGCTGATCAAGCTATGACCCAAAT -GTATAAACAGGCTAGATCTGAGGACAAGAGGGCAAAAGTTACTAGTGCTATGCAGACAAT -GCTTTTCACTATGCTTAGAAAGTTGGATAATGATGCACTCAACAACATTATCAACAATGC -AAGAGATGGTTGTGTTCCCTTGAACATAATACCTCTTACAACAGCAGCCAAACTAATGGT -TGTCATACCAGACTATAACACATATAAAAATACGTGTGATGGTACAACATTTACTTATGC -ATCAGCATTGTGGGAAATCCAACAGGTTGTAGATGCAGATAGTAAAATTGTTCAACTTAG -TGAAATTAGTATGGACAATTCACCTAATTTAGCATGGCCTCTTATTGTAACAGCTTTAAG -GGCCAATTCTGCTGTCAAATTACAGAATAATGAGCTTAGTCCTGTTGCACTACGACAGAT -GTCTTGTGCTGCCGGTACTACACAAACTGCTTGCACTGATGACAATGCGTTAGCTTACTA -CAACACAACAAAGGGAGGTAGGTTTGTACTTGCACTGTTATCCGATTTACAGGATTTGAA -ATGGGCTAGATTCCCTAAGAGTGATGGAACTGGTACTATCTATACAGAACTGGAACCACC -TTGTAGGTTTGTTACAGACACACCTAAAGGTCCTAAAGTGAAGTATTTATACTTTATTAA -AGGATTAAACAACCTAAATAGAGGTATGGTACTTGGTAGTTTAGCTGCCACAGTACGTCT -ACAAGCTGGTAATGCAACAGAAGTGCCTGCCAATTCAACTGTATTATCTTTCTGTGCTTT -TGCTGTAGATGCTGCTAAAGCTTACAAAGATTATCTAGCTAGTGGGGGACAACCAATCAC -TAATTGTGTTAAGATGTTGTGTACACACACTGGTACTGGTCAGGCAATAACAGTTACACC -GGAAGCCAATATGGATCAAGAATCCTTTGGTGGTGCATCGTGTTGTCTGTACTGCCGTTG -CCACATAGATCATCCAAATCCTAAAGGATTTTGTGACTTAAAAGGTAAGTATGTACAAAT -ACCTACAACTTGTGCTAATGACCCTGTGGGTTTTACACTTAAAAACACAGTCTGTACCGT -CTGCGGTATGTGGAAAGGTTATGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCA -GTCAGCTGATGCACAATCGTTTTTAAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACA -CCGTGCGGCACAGGCACTAGTACTGATGTCGTATACAGGGCTTTTGACATCTACAATGAT -AAAGTAGCTGGTTTTGCTAAATTCCTAAAAACTAATTGTTGTCGCTTCCAAGAAAAGGAC -GAAGATGACAATTTAATTGATTCTTACTTTGTAGTTAAGAGACACACTTTCTCTAACTAC -CAACATGAAGAAACAATTTATAATTTACTTAAGGATTGTCCAGCTGTTGCTAAACATGAC -TTCTTTAAGTTTAGAATAGACGGTGACATGGTACCACATATATCACGTCAACGTCTTACT -AAATACACAATGGCAGACCTCGTCTATGCTTTAAGGCATTTTGATGAAGGTAATTGTGAC -ACATTAAAAGAAATACTTGTCACATACAATTGTTGTGATGATGATTATTTCAATAAAAAG -GACTGGTATGATTTTGTAGAAAACCCAGATATATTACGCGTATACGCCAACTTAGGTGAA -CGTGTACGCCAAGCTTTGTTAAAAACAGTACAATTCTGTGATGCCATGCGAAATGCTGGT -ATTGTTGGTGTACTGACATTAGATAATCAAGATCTCAATGGTAACTGGTATGATTTCGGT -GATTTCATACAAACCACGCCAGGTAGTGGAGTTCCTGTTGTAGATTCTTATTATTCATTG -TTAATGCCTATATTAACCTTGACCAGGGCTTTAACTGCAGAGTCACATGTTGACACTGAC -TTAACAAAGCCTTACATTAAGTGGGATTTGTTAAAATATGACTTCACGGAAGAGAGGTTA -AAACTCTTTGACCGTTATTTTAAATATTGGGATCAGACATACCACCCAAATTGTGTTAAC -TGTTTGGATGACAGATGCATTCTGCATTGTGCAAACTTTAATGTTTTATTCTCTACAGTG -TTCCCACCTACAAGTTTTGGACCACTAGTGAGAAAAATATTTGTTGATGGTGTTCCATTT -GTAGTTTCAACTGGATACCACTTCAGAGAGCTAGGTGTTGTACATAATCAGGATGTAAAC -TTACATAGCTCTAGACTTAGTTTTAAGGAATTACTTGTGTATGCTGCTGACCCTGCTATG -CACGCTGCTTCTGGTAATCTATTACTAGATAAACGCACTACGTGCTTTTCAGTAGCTGCA -CTTACTAACAATGTTGCTTTTCAAACTGTCAAACCCGGTAATTTTAACAAAGACTTCTAT -GACTTTGCTGTGTCTAAGGGTTTCTTTAAGGAAGGAAGTTCTGTTGAATTAAAACACTTC -TTCTTTGCTCAGGATGGTAATGCTGCTATCAGCGATTATGACTACTATCGTTATAATCTA -CCAACAATGTGTGATATCAGACAACTACTATTTGTAGTTGAAGTTGTTGATAAGTACTTT -GATTGTTACGATGGTGGCTGTATTAATGCTAACCAAGTCATCGTCAACAACCTAGACAAA -TCAGCTGGTTTTCCATTTAATAAATGGGGTAAGGCTAGACTTTATTATGATTCAATGAGT -TATGAGGATCAAGATGCACTTTTCGCATATACAAAACGTAATGTCATCCCTACTATAACT -CAAATGAATCTTAAGTATGCCATTAGTGCAAAGAATAGAGCTCGCACCGTAGCTGGTGTC -TCTATCTGTAGTACTATGACCAATAGACAGTTTCATCAAAAATTATTGAAATCAATAGCC -GCCACTAGAGGAGCTACTGTAGTAATTGGAACAAGCAAATTCTATGGTGGTTGGCACAAC -ATGTTAAAAACTGTTTATAGTGATGTAGAAAACCCTCACCTTATGGGTTGGGATTATCCT -AAATGTGATAGAGCCATGCCTAACATGCTTAGAATTATGGCCTCACTTGTTCTTGCTCGC -AAACATACAACGTGTTGTAGCTTGTCACACCGTTTCTATAGATTAGCTAATGAGTGTGCT -CAAGTATTGAGTGAAATGGTCATGTGTGGCGGTTCACTATATGTTAAACCAGGTGGAACC -TCATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTTTTAACATTTGTCAAGCTGTC -ACGGCCAATGTTAATGCACTTTTATCTACTGATGGTAACAAAATTGCCGATAAGTATGTC -CGCAATTTACAACACAGACTTTATGAGTGTCTCTATAGAAATAGAGATGTTGACACAGAC -TTTGTGAATGAGTTTTACGCATATTTGCGTAAACATTTCTCAATGATGATACTCTCTGAC -GATGCTGTTGTGTGTTTCAATAGCACTTATGCATCTCAAGGTCTAGTGGCTAGCATAAAG -AACTTTAAGTCAGTTCTTTATTATCAAAACAATGTTTTTATGTCTGAAGCAAAATGTTGG -ACTGAGACTGACCTTACTAAAGGACCTCATGAATTTTGCTCTCAACATACAATGCTAGTT -AAACAGGGTGATGATTATGTGTACCTTCCTTACCCAGATCCATCAAGAATCCTAGGGGCC -GGCTGTTTTGTAGATGATATCGTAAAAACAGATGGTACACTTATGATTGAACGGTTCGTG -TCTTTAGCTATAGATGCTTACCCACTTACTAAACATCCTAATCAGGAGTATGCTGATGTC -TTTCATTTGTACTTACAATACATAAGAAAGCTACATGATGAGTTAACAGGACACATGTTA -GACATGTATTCTGTTATGCTTACTAATGATAACACTTCAAGGTATTGGGAACCTGAGTTT -TATGAGGCTATGTACACACCGCATACAGTCTTACAGGCTGTTGGGGCTTGTGTTCTTTGC -AATTCACAGACTTCATTAAGATGTGGTGCTTGCATACGTAGACCATTCTTATGTTGTAAA -TGCTGTTACGACCATGTCATATCAACATCACATAAATTAGTCTTGTCTGTTAATCCGTAT -GTTTGCAATGCTCCAGGTTGTGATGTCACAGATGTGACTCAACTTTACTTAGGAGGTATG -AGCTATTATTGTAAATCACATAAACCACCCATTAGTTTTCCATTGTGTGCTAATGGACAA -GTTTTTGGTTTATATAAAAATACATGTGTTGGTAGCGATAATGTTACTGACTTTAATGCA -ATTGCAACATGTGACTGGACAAATGCTGGTGATTACATTTTAGCTAACACCTGTACTGAA -AGACTCAAGCTTTTTGCAGCAGAAACGCTCAAAGCTACTGAGGAGACATTTAAACTGTCT -TATGGTATTGCTACTGTACGTGAAGTGCTGTCTGACAGAGAATTACATCTTTCATGGGAA -GTTGGTAAACCTAGACCACCACTTAACCGAAATTATGTCTTTACTGGTTATCGTGTAACT -AAAAACAGTAAAGTACAAATAGGAGAGTACACCTTTGAAAAAGGTGACTATGGTGATGCT -GTTGTTTACCGAGGTACAACAACTTACAAATTAAATGTTGGTGATTATTTTGTGCTGACA -TCACATACAGTAATGCCATTAAGTGCACCTACACTAGTGCCACAAGAGCACTATGTTAGA -ATTACTGGCTTATACCCAACACTCAATATCTCAGATGAGTTTTCTAGCAATGTTGCAAAT -TATCAAAAGGTTGGTATGCAAAAGTATTCTACACTCCAGGGACCACCTGGTACTGGTAAG -AGTCATTTTGCTATTGGCCTAGCTCTCTACTACCCTTCTGCTCGCATAGTGTATACAGCT -TGCTCTCATGCCGCTGTTGATGCACTATGTGAGAAGGCATTAAAATATTTGCCTATAGAT -AAATGTAGTAGAATTATACCTGCACGTGCTCGTGTAGAGTGTTTTGATAAATTCAAAGTG -AATTCAACATTAGAACAGTATGTCTTTTGTACTGTAAATGCATTGCCTGAGACGACAGCA -GATATAGTTGTCTTTGATGAAATTTCAATGGCCACAAATTATGATTTGAGTGTTGTCAAT -GCCAGATTACGTGCTAAGCACTATGTGTACATTGGCGACCCTGCTCAATTACCTGCACCA -CGCACATTGCTAACTAAGGGCACACTAGAACCAGAATATTTCAATTCAGTGTGTAGACTT -ATGAAAACTATAGGTCCAGACATGTTCCTCGGAACTTGTCGGCGTTGTCCTGCTGAAATT -GTTGACACTGTGAGTGCTTTGGTTTATGATAATAAGCTTAAAGCACATAAAGACAAATCA -GCTCAATGCTTTAAAATGTTTTATAAGGGTGTTATCACGCATGATGTTTCATCTGCAATT -AACAGGCCACAAATAGGCGTGGTAAGAGAATTCCTTACACGTAACCCTGCTTGGAGAAAA -GCTGTCTTTATTTCACCTTATAATTCACAGAATGCTGTAGCCTCAAAGATTTTGGGACTA -CCAACTCAAACTGTTGATTCATCACAGGGCTCAGAATATGACTATGTCATATTCACTCAA -ACCACTGAAACAGCTCACTCTTGTAATGTAAACAGATTTAATGTTGCTATTACCAGAGCA -AAAGTAGGCATACTTTGCATAATGTCTGATAGAGACCTTTATGACAAGTTGCAATTTACA -AGTCTTGAAATTCCACGTAGGAATGTGGCAACTTTACAAGCTGAAAATGTAACAGGACTC -TTTAAAGATTGTAGTAAGGTAATCACTGGGTTACATCCTACACAGGCACCTACACACCTC -AGTGTTGACACTAAATTCAAAACTGAAGGTTTATGTGTTGACATACCTGGCATACCTAAG -GACATGACCTATAGAAGACTCATCTCTATGATGGGTTTTAAAATGAATTATCAAGTTAAT -GGTTACCCTAACATGTTTATCACCCGCGAAGAAGCTATAAGACATGTACGTGCATGGATT -GGCTTCGATGTCGAGGGGTGTCATGCTACTAGAGAAGCTGTTGGTACCAATTTACCTTTA -CAGCTAGGTTTTTCTACAGGTGTTAACCTAGTTGCTGTACCTACAGGTTATGTTGATACA -CCTAATAATACAGATTTTTCCAGAGTTAGTGCTAAACCACCGCCTGGAGATCAATTTAAA -CACCTCATACCACTTATGTACAAAGGACTTCCTTGGAATGTAGTGCGTATAAAGATTGTA -CAAATGTTAAGTGACACACTTAAAAATCTCTCTGACAGAGTCGTATTTGTCTTATGGGCA -CATGGCTTTGAGTTGACATCTATGAAGTATTTTGTGAAAATAGGACCTGAGCGCACCTGT -TGTCTATGTGATAGACGTGCCACATGCTTTTCCACTGCTTCAGACACTTATGCCTGTTGG -CATCATTCTATTGGATTTGATTACGTCTATAATCCGTTTATGATTGATGTTCAACAATGG -GGTTTTACAGGTAACCTACAAAGCAACCATGATCTGTATTGTCAAGTCCATGGTAATGCA -CATGTAGCTAGTTGTGATGCAATCATGACTAGGTGTCTAGCTGTCCACGAGTGCTTTGTT -AAGCGTGTTGACTGGACTATTGAATATCCTATAATTGGTGATGAACTGAAGATTAATGCG -GCTTGTAGAAAGGTTCAACACATGGTTGTTAAAGCTGCATTATTAGCAGACAAATTCCCA -GTTCTTCACGACATTGGTAACCCTAAAGCTATTAAGTGTGTACCTCAAGCTGATGTAGAA -TGGAAGTTCTATGATGCACAGCCTTGTAGTGACAAAGCTTATAAAATAGAAGAATTATTC -TATTCTTATGCCACACATTCTGACAAATTCACAGATGGTGTATGCCTATTTTGGAATTGC -AATGTCGATAGATATCCTGCTAATTCCATTGTTTGTAGATTTGACACTAGAGTGCTATCT -AACCTTAACTTGCCTGGTTGTGATGGTGGCAGTTTGTATGTAAATAAACATGCATTCCAC -ACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTAC -TCTGACAGTCCATGTGAGTCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCA -CTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGTGCTGTCTGTAGACATCAT -GCTAATGAGTACAGATTGTATCTCGATGCTTATAACATGATGATCTCAGCTGGCTTTAGC -TTGTGGGTTTACAAACAATTTGATACTTATAACCTCTGGAACACTTTTACAAGACTTCAG -AGTTTAGAAAATGTGGCTTTTAATGTTGTAAATAAGGGACACTTTGATGGACAACAGGGT -GAAGTACCAGTTTCTATCATTAATAACACTGTTTACACAAAAGTTGATGGTGTTGATGTA -GAATTGTTTGAAAATAAAACAACATTACCTGTTAATGTAGCATTTGAGCTTTGGGCTAAG -CGCAACATTAAACCAGTACCAGAGGTGAAAATACTCAATAATTTGGGTGTGGACATTGCT -GCTAATACTGTGATCTGGGACTACAAAAGAGATGCTCCAGCACATATATCTACTATTGGT -GTTTGTTCTATGACTGACATAGCCAAGAAACCAACTGAAACGATTTGTGCACCACTCACT -GTCTTTTTTGATGGTAGAGTTGATGGTCAAGTAGACTTATTTAGAAATGCCCGTAATGGT -GTTCTTATTACAGAAGGTAGTGTTAAAGGTTTACAACCATCTGTAGGTCCCAAACAAGCT -AGTCTTAATGGAGTCACATTAATTGGAGAAGCCGTAAAAACACAGTTCAATTATTATAAG -AAAGTTGATGGTGTTGTCCAACAATTACCTGAAACTTACTTTACTCAGAGTAGAAATTTA -CAAGAATTTAAACCCAGGAGTCAAATGGAAATTGATTTCTTAGAATTAGCTATGGATGAA -TTCATTGAACGGTATAAATTAGAAGGCTATGCCTTCGAACATATCGTTTATGGAGATTTT -AGTCATAGTCAGTTAGGTGGTTTACATCTACTGATTGGACTAGCTAAACGTTTTAAGGAA -TCACCTTTTGAATTAGAAGATTTTATTCCTATGGACAGTACAGTTAAAAACTATTTCATA -ACAGATGCGCAAACAGGTTCATCTAAGTGTGTGTGTTCTGTTATTGATTTATTACTTGAT -GATTTTGTTGAAATAATAAAATCCCAAGATTTATCTGTAGTTTCTAAGGTTGTCAAAGTG -ACTATTGACTATACAGAAATTTCATTTATGCTTTGGTGTAAAGATGGCCATGTAGAAACA -TTTTACCCAAAATTACAATCTAGTCAAGCGTGGCAACCGGGTGTTGCTATGCCTAATCTT -TACAAAATGCAAAGAATGCTATTAGAAAAGTGTGACCTTCAAAATTATGGTGATAGTGCA -ACATTACCTAAAGGCATAATGATGAATGTCGCAAAATATACTCAACTGTGTCAATATTTA -AACACATTAACATTAGCTGTACCCTATAATATGAGAGTTATACATTTTGGTGCTGGTTCT -GATAAAGGAGTTGCACCAGGTACAGCTGTTTTAAGACAGTGGTTGCCTACGGGTACGCTG -CTTGTCGATTCAGATCTTAATGACTTTGTCTCTGATGCAGATTCAACTTTGATTGGTGAT -TGTGCAACTGTACATACAGCTAATAAATGGGATCTCATTATTAGTGATATGTACGACCCT -AAGACTAAAAATGTTACAAAAGAAAATGACTCTAAAGAGGGTTTTTTCACTTACATTTGT -GGGTTTATACAACAAAAGCTAGCTCTTGGAGGTTCCGTGGCTATAAAGATAACAGAACAT -TCTTGGAATGCTGATCTTTATAAGCTCATGGGACACTTCGCATGGTGGACAGCCTTTGTT -ACTAATGTGAATGCGTCATCATCTGAAGCATTTTTAATTGGATGTAATTATCTTGGCAAA -CCACGCGAACAAATAGATGGTTATGTCATGCATGCAAATTACATATTTTGGAGGAATACA -AATCCAATTCAGTTGTCTTCCTATTCTTTATTTGACATGAGTAAATTTCCCCTTAAATTA -AGGGGTACTGCTGTTATGTCTTTAAAAGAAGGTCAAATCAATGATATGATTTTATCTCTT -CTTAGTAAAGGTAGACTTATAATTAGAGAAAACAACAGAGTTGTTATTTCTAGTGATGTT -CTTGTTAACAACTAAACGAACAATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAG -TCAGTGTGTTAATCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCAC -ACGTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGA -CTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCATGCTATACATGTCTCTGGGAC -CAATGGTACTAAGAGGTTTGATAACCCTGTCCTACCATTTAATGATGGTGTTTATTTTGC -TTCCACTGAGAAGTCTAACATAATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAA -GACCCAGTCCCTACTTATTGTTAATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATT -TCAATTTTGTAATGATCCATTTTTGGGTGTTTATTACCACAAAAACAACAAAAGTTGGAT -GGAAAGTGAGTTCAGAGTTTATTCTAGTGCGAATAATTGCACTTTTGAATATGTCTCTCA -GCCTTTTCTTATGGACCTTGAAGGAAAACAGGGTAATTTCAAAAATCTTAGGGAATTTGT -GTTTAAGAATATTGATGGTTATTTTAAAATATATTCTAAGCACACGCCTATTAATTTAGT -GCGTGATCTCCCTCAGGGTTTTTCGGCTTTAGAACCATTGGTAGATTTGCCAATAGGTAT -TAACATCACTAGGTTTCAAACTTTACTTGCTTTACATAGAAGTTATTTGACTCCTGGTGA -TTCTTCTTCAGGTTGGACAGCTGGTGCTGCAGCTTATTATGTGGGTTATCTTCAACCTAG -GACTTTTCTATTAAAATATAATGAAAATGGAACCATTACAGATGCTGTAGACTGTGCACT -TGACCCTCTCTCAGAAACAAAGTGTACGTTGAAATCCTTCACTGTAGAAAAAGGAATCTA -TCAAACTTCTAACTTTAGAGTCCAACCAACAGAATCTATTGTTAGATTTCCTAATATTAC -AAACTTGTGCCCTTTTGGTGAAGTTTTTAACGCCACCAGATTTGCATCTGTTTATGCTTG -GAACAGGAAGAGAATCAGCAACTGTGTTGCTGATTATTCTGTCCTATATAATTCCGCATC -ATTTTCCACTTTTAAGTGTTATGGAGTGTCTCCTACTAAATTAAATGATCTCTGCTTTAC -TAATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGG -GCAAACTGGAAAGATTGCTGATTATAATTATAAATTACCAGATGATTTTACAGGCTGCGT -TATAGCTTGGAATTCTAACAATCTTGATTCTAAGGTTGGTGGTAATTATAATTACCTGTA -TAGATTGTTTAGGAAGTCTAATCTCAAACCTTTTGAGAGAGATATTTCAACTGAAATCTA -TCAGGCCGGTAGCACACCTTGTAATGGTGTTGAAGGTTTTAATTGTTACTTTCCTTTACA -ATCATATGGTTTCCAACCCACTAATGGTGTTGGTTACCAACCATACAGAGTAGTAGTACT -TTCTTTTGAACTTCTACATGCACCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTT -GGTTAAAAACAAATGTGTCAATTTCAACTTCAATGGTTTAACAGGCACAGGTGTTCTTAC -TGAGTCTAACAAAAAGTTTCTGCCTTTCCAACAATTTGGCAGAGACATTGCTGACACTAC -TGATGCTGTCCGTGATCCACAGACACTTGAGATTCTTGACATTACACCATGTTCTTTTGG -TGGTGTCAGTGTTATAACACCAGGAACAAATACTTCTAACCAGGTTGCTGTTCTTTATCA -GGATGTTAACTGCACAGAAGTCCCTGTTGCTATTCATGCAGATCAACTTACTCCTACTTG -GCGTGTTTATTCTACAGGTTCTAATGTTTTTCAAACACGTGCAGGCTGTTTAATAGGGGC -TGAACATGTCAACAACTCATATGAGTGTGACATACCCATTGGTGCAGGTATATGCGCTAG -TTATCAGACTCAGACTAATTCTCCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATCAT -TGCCTACACTATGTCACTTGGTGCAGAAAATTCAGTTGCTTACTCTAATAACTCTATTGC -CATACCCACAAATTTTACTATTAGTGTTACCACAGAAATTCTACCAGTGTCTATGACCAA -GACATCAGTAGATTGTACAATGTACATTTGTGGTGATTCAACTGAATGCAGCAATCTTTT -GTTGCAATATGGCAGTTTTTGTACACAATTAAACCGTGCTTTAACTGGAATAGCTGTTGA -ACAAGACAAAAACACCCAAGAAGTTTTTGCACAAGTCAAACAAATTTACAAAACACCACC -AATTAAAGATTTTGGTGGTTTTAATTTTTCACAAATATTACCAGATCCATCAAAACCAAG -CAAGAGGTCATTTATTGAAGATCTACTTTTCAACAAAGTGACACTTGCAGATGCTGGCTT -CATCAAACAATATGGTGATTGCCTTGGTGATATTGCTGCTAGAGACCTCATTTGTGCACA -AAAGTTTAACGGCCTTACTGTTTTGCCACCTTTGCTCACAGATGAAATGATTGCTCAATA -CACTTCTGCACTGTTAGCGGGTACAATCACTTCTGGTTGGACCTTTGGTGCAGGTGCTGC -ATTACAAATACCATTTGCTATGCAAATGGCTTATAGGTTTAATGGTATTGGAGTTACACA -GAATGTTCTCTATGAGAACCAAAAATTGATTGCCAACCAATTTAATAGTGCTATTGGCAA -AATTCAAGACTCACTTTCTTCCACAGCAAGTGCACTTGGAAAACTTCAAGATGTGGTCAA -CCAAAATGCACAAGCTTTAAACACGCTTGTTAAACAACTTAGCTCCAATTTTGGTGCAAT -TTCAAGTGTTTTAAATGATATCCTTTCACGTCTTGACAAAGTTGAGGCTGAAGTGCAAAT -TGATAGGTTGATCACAGGCAGACTTCAAAGTTTGCAGACATATGTGACTCAACAATTAAT -TAGAGCTGCAGAAATCAGAGCTTCTGCTAATCTTGCTGCTACTAAAATGTCAGAGTGTGT -ACTTGGACAATCAAAAAGAGTTGATTTTTGTGGAAAGGGCTATCATCTTATGTCCTTCCC -TCAGTCAGCACCTCATGGTGTAGTCTTCTTGCATGTGACTTATGTCCCTGCACAAGAAAA -GAACTTCACAACTGCTCCTGCCATTTGTCATGATGGAAAAGCACACTTTCCTCGTGAAGG -TGTCTTTGTTTCAAATGGCACACACTGGTTTGTAACACAAAGGAATTTTTATGAACCACA -AATCATTACTACAGACAACACATTTGTGTCTGGTAACTGTGATGTTGTAATAGGAATTGT -CAACAACACAGTTTATGATCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGA -TAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGGTGACATCTCTGGCATTAA -TGCTTCAGTTGTAAACATTCAAAAAGAAATTGACCGCCTCAATGAGGTTGCCAAGAATTT -AAATGAATCTCTCATCGATCTCCAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCC -ATGGTACATTTGGCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTAT -GCTTTGCTGTATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTG -CTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACAC -ATAAACGAACTTATGGATTTGTTTATGAGAATCTTCACAATTGGAACTGTAACTTTGAAG -CAAGGTGAAATCAAGGATGCTACTCCTTCAGATTTTGTTCGCGCTACTGCAACGATACCG -ATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCACTTCTTGCTGTTTTT -CAGAGCGCTTCCAAAATCATAACCCTCAAAAAGAGATGGCAACTAGCACTCTCCAAGGGT -GTTCACTTTGTTTGCAACTTGCTGTTGTTGTTTGTAACAGTTTACTCACACCTTTTGCTC -GTTGCTGCTGGCCTTGAAGCCCCTTTTCTCTATCTTTATGCTTTAGTCTACTTCTTGCAG -AGTATAAACTTTGTAAGAATAATAATGAGGCTTTGGCTTTGCTGGAAATGCCGTTCCAAA -AACCCATTACTTTATGATGCCAACTATTTTCTTTGCTGGCATACTAATTGTTACGACTAT -TGTATACCTTACAATAGTGTAACTTCTTCAATTGTCATTACTTCAGGTGATGGCACAACA -AGTCCTATTTCTGAACATGACTACCAGATTGGTGGTTATACTGAAAAATGGGAATCTGGA -GTAAAAGACTGTGTTGTATTACACAGTTACTTCACTTCAGACTATTACCAGCTGTACTCA -ACTCAATTGAGTACAGACACTGGTGTTGAACATGTTACCTTCTTCATCTACAATAAAATT -GTTGATGAGCCTGAAGAACATGTCCAAATTCACACAATCGACGGTTCATCCGGAGTTGTT -AATCCAGTAATGGAACCAATTTATGATGAACCGACGACGACTACTAGCGTGCCTTTGTAA -GCACAAGCTGATGAGTACGAACTTATGTACTCATTCGTTTCGGAAGAGACAGGTACGTTA -ATAGTTAATAGCGTACTTCTTTTTCTTGCTTTCGTGGTATTCTTGCTAGTTACACTAGCC -ATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTTGTA -AAACCTTCTTTTTACGTTTACTCTCGTGTTAAAAATCTGAATTCTTCTAGAGTTCCTGAT -CTTCTGGTCTAAACGAACTAAATATTATATTAGTTTTTCTGTTTGGAACTTTAATTTTAG -CCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTCCTTGAACAAT -GGAACCTAGTAATAGGTTTCCTATTCCTTACATGGATTTGTCTTCTACAATTTGCCTATG -CCAACAGGAATAGGTTTTTGTATATAATTAAGTTAATTTTCCTCTGGCTGTTATGGCCAG -TAACTTTAGCTTGTTTTGTGCTTGCTGCTGTTTACAGAATAAATTGGATCACCGGTGGAA -TTGCTATCGCAATGGCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTT -TCAGACTGTTTGCGCGTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAACATTCTTC -TCAACGTGCCACTCCATGGCACTATTCTGACCAGACCGCTTCTAGAAAGTGAACTCGTAA -TCGGAGCTGTGATCCTTCGTGGACATCTTCGTATTGCTGGACACCATCTAGGACGCTGTG -ACATCAAGGACCTGCCTAAAGAAATCACTGTTGCTACATCACGAACGCTTTCTTATTACA -AATTGGGAGCTTCGCAGCGTGTAGCAGGTGACTCAGGTTTTGCTGCATACAGTCGCTACA -GGATTGGCAACTATAAATTAAACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGC -TTGTACAGTAAGTGACAACAGATGTTTCATCTCGTTGACTTTCAGGTTACTATAGCAGAG -ATATTACTAATTATTATGAGGACTTTTAAAGTTTCCATTTGGAATCTTGATTACATCATA -AACCTCATAATTAAAAATTTATCTAAGTCACTAACTGAGAATAAATATTCTCAATTAGAT -GAAGAGCAACCAATGGAGATTGATTAAACGAACATGAAAATTATTCTTTTCTTGGCACTG -ATAACACTCGCTACTTGTGAGCTTTATCACTACCAAGAGTGTGTTAGAGGTACAACAGTA -CTTTTAAAAGAACCTTGCTCTTCTGGAACATACGAGGGCAATTCACCATTTCATCCTCTA -GCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGAC -GGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGA -CAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTT -ATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGATTGAACTTTCATTAATTGACT -TCTATTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTATCTTTT -GGTTCTCACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAAT -TTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTAC -AGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATT -CTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGG -ATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCT -GTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTT -CGTTCTATGAAGACTTTTTAGAGTATCATGACGTTCGTGTTGTTTTAGATTTCATCTAAA -CGAACAAACTAAAATGTCTGATAATGGACCCCAAAATCAGCGAAATGCACCCCGCATTAC -GTTTGGTGGACCCTCAGATTCAACTGGCAGTAACCAGAATGGAGAACGCAGTGGGGCGCG -ATCAAAACAACGTCGGCCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCT -CACTCAACATGGCAAGGAAGACCTTAAATTCCCTCGAGGACAAGGCGTTCCAATTAACAC -CAATAGCAGTCCAGATGACCAAATTGGCTACTACCGAAGAGCTACCAGACGAATTCGTGG -TGGTGACGGTAAAATGAAAGATCTCAGTCCAAGATGGTATTTCTACTACCTAGGAACTGG -GCCAGAAGCTGGACTTCCCTATGGTGCTAACAAAGACGGCATCATATGGGTTGCAACTGA -GGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGCAATCCTGCTAACAATGCTGC -AATCGTGCTACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAAGGGAG -CAGAGGCGGCAGTCAAGCCTCTTCTCGTTCCTCATCACGTAGTCGCAACAGTTCAAGAAA -TTCAACTCCAGGCAGCAGTAGGGGAACTTCTCCTGCTAGAATGGCTGGCAATGGCGGTGA -TGCTGCTCTTGCTTTGCTGCTGCTTGACAGATTGAACCAGCTTGAGAGCAAAATGTCTGG -TAAAGGCCAACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCTTCTAA -GAAGCCTCGGCAAAAACGTACTGCCACTAAAGCATACAATGTAACACAAGCTTTCGGCAG -ACGTGGTCCAGAACAAACCCAAGGAAATTTTGGGGACCAGGAACTAATCAGACAAGGAAC -TGATTACAAACATTGGCCGCAAATTGCACAATTTGCCCCCAGCGCTTCAGCGTTCTTCGG -AATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGC -CATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCA -TATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGC -TGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCC -TGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTC -AACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGC -TTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGC -ACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTA -GGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGT -ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAAT -TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAA -AAAAAAAAAAAAAAAAAAAAAAA diff --git a/sars-cov-2/varskip/vss1a/scheme.bed b/sars-cov-2/varskip/vss1a/scheme.bed deleted file mode 100644 index 48675b3..0000000 --- a/sars-cov-2/varskip/vss1a/scheme.bed +++ /dev/null @@ -1,148 +0,0 @@ -MN908947.3 22 46 varskip-0317-1_01_LEFT 0 + -MN908947.3 418 443 varskip-0317-1_02_LEFT 1 + -MN908947.3 559 581 varskip-0317-1_01_RIGHT 0 - -MN908947.3 841 863 varskip-0317-1_03_LEFT 0 + -MN908947.3 976 998 varskip-0317-1_02_RIGHT 1 - -MN908947.3 1277 1299 varskip-0317-1_04_LEFT 1 + -MN908947.3 1402 1424 varskip-0317-1_03_RIGHT 0 - -MN908947.3 1695 1717 varskip-0317-1_05_LEFT 0 + -MN908947.3 1821 1844 varskip-0317-1_04_RIGHT 1 - -MN908947.3 2061 2086 varskip-0317-1_06_LEFT 1 + -MN908947.3 2228 2250 varskip-0317-1_05_RIGHT 0 - -MN908947.3 2483 2508 varskip-0317-1_07_LEFT 0 + -MN908947.3 2621 2643 varskip-0317-1_06_RIGHT 1 - -MN908947.3 2923 2947 varskip-0317-1_08_LEFT 1 + -MN908947.3 3043 3067 varskip-0317-1_07_RIGHT 0 - -MN908947.3 3326 3355 varskip-0317-1_09_LEFT 0 + -MN908947.3 3470 3492 varskip-0317-1_08_RIGHT 1 - -MN908947.3 3753 3778 varskip-0317-1_10_LEFT 1 + -MN908947.3 3887 3915 varskip-0317-1_09_RIGHT 0 - -MN908947.3 4154 4180 varskip-0317-1_11_LEFT_alt1 0 + -MN908947.3 4296 4322 varskip-0317-1_10_RIGHT 1 - -MN908947.3 4594 4617 varskip-0317-1_12_LEFT 1 + -MN908947.3 4714 4743 varskip-0317-1_11_RIGHT 0 - -MN908947.3 5006 5028 varskip-0317-1_13_LEFT 0 + -MN908947.3 5145 5168 varskip-0317-1_12_RIGHT 1 - -MN908947.3 5340 5366 varskip-0317-1_14_LEFT 1 + -MN908947.3 5555 5580 varskip-0317-1_13_RIGHT_alt1 0 - -MN908947.3 5794 5817 varskip-0317-1_15_LEFT 0 + -MN908947.3 5914 5939 varskip-0317-1_14_RIGHT 1 - -MN908947.3 6217 6245 varskip-0317-1_16_LEFT 1 + -MN908947.3 6341 6363 varskip-0317-1_15_RIGHT 0 - -MN908947.3 6561 6594 varskip-0317-1_17_LEFT 0 + -MN908947.3 6749 6776 varskip-0317-1_16_RIGHT 1 - -MN908947.3 7000 7022 varskip-0317-1_18_LEFT 1 + -MN908947.3 7124 7151 varskip-0317-1_17_RIGHT_alt1 0 - -MN908947.3 7403 7429 varskip-0317-1_19_LEFT 0 + -MN908947.3 7547 7574 varskip-0317-1_18_RIGHT 1 - -MN908947.3 7836 7861 varskip-0317-1_20_LEFT 1 + -MN908947.3 7984 8007 varskip-0317-1_19_RIGHT_alt1 0 - -MN908947.3 8245 8269 varskip-0317-1_21_LEFT 0 + -MN908947.3 8384 8409 varskip-0317-1_20_RIGHT 1 - -MN908947.3 8685 8709 varskip-0317-1_22_LEFT 1 + -MN908947.3 8818 8843 varskip-0317-1_21_RIGHT_alt1 0 - -MN908947.3 9099 9121 varskip-0317-1_23_LEFT 0 + -MN908947.3 9221 9243 varskip-0317-1_22_RIGHT 1 - -MN908947.3 9478 9502 varskip-0317-1_24_LEFT 1 + -MN908947.3 9644 9667 varskip-0317-1_23_RIGHT 0 - -MN908947.3 9842 9865 varskip-0317-1_25_LEFT 0 + -MN908947.3 10039 10061 varskip-0317-1_24_RIGHT 1 - -MN908947.3 10269 10293 varskip-0317-1_26_LEFT 1 + -MN908947.3 10396 10422 varskip-0317-1_25_RIGHT_alt1 0 - -MN908947.3 10696 10719 varskip-0317-1_27_LEFT 0 + -MN908947.3 10816 10838 varskip-0317-1_26_RIGHT 1 - -MN908947.3 11092 11116 varskip-0317-1_28_LEFT 1 + -MN908947.3 11243 11268 varskip-0317-1_27_RIGHT 0 - -MN908947.3 11371 11393 varskip-0317-1_29_LEFT 0 + -MN908947.3 11647 11670 varskip-0317-1_28_RIGHT 1 - -MN908947.3 11824 11851 varskip-0317-1_30_LEFT_alt1 1 + -MN908947.3 11921 11943 varskip-0317-1_29_RIGHT 0 - -MN908947.3 12201 12226 varskip-0317-1_31_LEFT 0 + -MN908947.3 12329 12353 varskip-0317-1_30_RIGHT 1 - -MN908947.3 12632 12656 varskip-0317-1_32_LEFT 1 + -MN908947.3 12752 12774 varskip-0317-1_31_RIGHT 0 - -MN908947.3 13034 13058 varskip-0317-1_33_LEFT_alt1 0 + -MN908947.3 13166 13188 varskip-0317-1_32_RIGHT 1 - -MN908947.3 13479 13501 varskip-0317-1_34_LEFT 1 + -MN908947.3 13599 13621 varskip-0317-1_33_RIGHT 0 - -MN908947.3 13874 13901 varskip-0317-1_35_LEFT 0 + -MN908947.3 14009 14031 varskip-0317-1_34_RIGHT 1 - -MN908947.3 14290 14319 varskip-0317-1_36_LEFT 1 + -MN908947.3 14417 14444 varskip-0317-1_35_RIGHT 0 - -MN908947.3 14651 14675 varskip-0317-1_37_LEFT 0 + -MN908947.3 14826 14855 varskip-0317-1_36_RIGHT 1 - -MN908947.3 15064 15091 varskip-0317-1_38_LEFT 1 + -MN908947.3 15191 15217 varskip-0317-1_37_RIGHT 0 - -MN908947.3 15428 15450 varskip-0317-1_39_LEFT_alt1 0 + -MN908947.3 15598 15622 varskip-0317-1_38_RIGHT 1 - -MN908947.3 15862 15887 varskip-0317-1_40_LEFT 1 + -MN908947.3 16007 16029 varskip-0317-1_39_RIGHT 0 - -MN908947.3 16277 16299 varskip-0317-1_41_LEFT 0 + -MN908947.3 16416 16443 varskip-0317-1_40_RIGHT 1 - -MN908947.3 16689 16711 varskip-0317-1_42_LEFT 1 + -MN908947.3 16842 16865 varskip-0317-1_41_RIGHT 0 - -MN908947.3 17057 17082 varskip-0317-1_43_LEFT 0 + -MN908947.3 17246 17266 varskip-0317-1_42_RIGHT 1 - -MN908947.3 17476 17500 varskip-0317-1_44_LEFT 1 + -MN908947.3 17621 17646 varskip-0317-1_43_RIGHT 0 - -MN908947.3 17889 17915 varskip-0317-1_45_LEFT 0 + -MN908947.3 18033 18059 varskip-0317-1_44_RIGHT 1 - -MN908947.3 18311 18333 varskip-0317-1_46_LEFT 1 + -MN908947.3 18441 18463 varskip-0317-1_45_RIGHT 0 - -MN908947.3 18712 18737 varskip-0317-1_47_LEFT 0 + -MN908947.3 18852 18876 varskip-0317-1_46_RIGHT 1 - -MN908947.3 19092 19114 varskip-0317-1_48_LEFT 1 + -MN908947.3 19247 19273 varskip-0317-1_47_RIGHT_alt1 0 - -MN908947.3 19488 19515 varskip-0317-1_49_LEFT 0 + -MN908947.3 19641 19669 varskip-0317-1_48_RIGHT 1 - -MN908947.3 19885 19911 varskip-0317-1_50_LEFT_alt1 1 + -MN908947.3 20037 20064 varskip-0317-1_49_RIGHT 0 - -MN908947.3 20340 20366 varskip-0317-1_51_LEFT 0 + -MN908947.3 20462 20484 varskip-0317-1_50_RIGHT 1 - -MN908947.3 20766 20792 varskip-0317-1_52_LEFT 1 + -MN908947.3 20890 20912 varskip-0317-1_51_RIGHT 0 - -MN908947.3 21194 21219 varskip-0317-1_53_LEFT_alt1 0 + -MN908947.3 21314 21338 varskip-0317-1_52_RIGHT 1 - -MN908947.3 21537 21566 varskip-0317-1_54_LEFT 1 + -MN908947.3 21724 21753 varskip-0317-1_53_RIGHT 0 - -MN908947.3 21926 21955 varskip-0317-1_55_LEFT 0 + -MN908947.3 22091 22113 varskip-0317-1_54_RIGHT 1 - -MN908947.3 22347 22373 varskip-0317-1_56_LEFT 1 + -MN908947.3 22480 22510 varskip-0317-1_55_RIGHT 0 - -MN908947.3 22749 22776 varskip-0317-1_57_LEFT 0 + -MN908947.3 22879 22907 varskip-0317-1_56_RIGHT 1 - -MN908947.3 23122 23144 varskip-0317-1_58_LEFT 1 + -MN908947.3 23288 23310 varskip-0317-1_57_RIGHT 0 - -MN908947.3 23545 23567 varskip-0317-1_59_LEFT 0 + -MN908947.3 23681 23708 varskip-0317-1_58_RIGHT 1 - -MN908947.3 23979 24002 varskip-0317-1_60_LEFT 1 + -MN908947.3 24112 24134 varskip-0317-1_59_RIGHT 0 - -MN908947.3 24375 24397 varskip-0317-1_61_LEFT 0 + -MN908947.3 24518 24541 varskip-0317-1_60_RIGHT 1 - -MN908947.3 24789 24811 varskip-0317-1_62_LEFT 1 + -MN908947.3 24924 24948 varskip-0317-1_61_RIGHT 0 - -MN908947.3 25171 25200 varskip-0317-1_63_LEFT 0 + -MN908947.3 25331 25353 varskip-0317-1_62_RIGHT 1 - -MN908947.3 25575 25600 varskip-0317-1_64_LEFT 1 + -MN908947.3 25725 25754 varskip-0317-1_63_RIGHT 0 - -MN908947.3 25970 25995 varskip-0317-1_65_LEFT_alt1 0 + -MN908947.3 26120 26143 varskip-0317-1_64_RIGHT 1 - -MN908947.3 26359 26381 varskip-0317-1_66_LEFT 1 + -MN908947.3 26497 26525 varskip-0317-1_65_RIGHT 0 - -MN908947.3 26706 26728 varskip-0317-1_67_LEFT 0 + -MN908947.3 26905 26927 varskip-0317-1_66_RIGHT 1 - -MN908947.3 27081 27103 varskip-0317-1_68_LEFT 1 + -MN908947.3 27256 27283 varskip-0317-1_67_RIGHT 0 - -MN908947.3 27485 27511 varskip-0317-1_69_LEFT_alt1 0 + -MN908947.3 27647 27671 varskip-0317-1_68_RIGHT 1 - -MN908947.3 27835 27859 varskip-0317-1_70_LEFT 1 + -MN908947.3 28051 28076 varskip-0317-1_69_RIGHT 0 - -MN908947.3 28219 28243 varskip-0317-1_71_LEFT 0 + -MN908947.3 28380 28400 varskip-0317-1_70_RIGHT 1 - -MN908947.3 28627 28649 varskip-0317-1_72_LEFT 1 + -MN908947.3 28783 28805 varskip-0317-1_71_RIGHT 0 - -MN908947.3 29062 29088 varskip-0317-1_73_LEFT 0 + -MN908947.3 29203 29225 varskip-0317-1_72_RIGHT 1 - -MN908947.3 29270 29292 varskip-0317-1_74_LEFT 1 + -MN908947.3 29617 29644 varskip-0317-1_73_RIGHT 0 - -MN908947.3 29799 29831 varskip-0317-1_74_RIGHT 1 - diff --git a/sars-cov-2/varskip/vss2a/info.yml b/sars-cov-2/varskip/vss2a/info.yml deleted file mode 100644 index 6072406..0000000 --- a/sars-cov-2/varskip/vss2a/info.yml +++ /dev/null @@ -1,22 +0,0 @@ -schema_version: 0.9.0 -name: varskip-vss2a -display_name: VarSkip VSS2A -organism: sars-cov-2 -developers: -- organisation_name: New England BioLabs - home_page: https://neb.com -- organisation_name: ARTIC network - home_page: https://artic.network -vendors: -- organisation_name: New England BioLabs - home_page: https://neb.com -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/varskip/vss2a -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -notes: -- Adapted from bed + tsv at https://github.com/nebiolabs/VarSkip with help from Brad - Langhorst -derived_from: varskip-vss1a -primer_checksum: primaschema:2666515f9715280a -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/varskip/vss2a/primer.bed b/sars-cov-2/varskip/vss2a/primer.bed deleted file mode 100644 index bbd4afd..0000000 --- a/sars-cov-2/varskip/vss2a/primer.bed +++ /dev/null @@ -1,148 +0,0 @@ -MN908947.3 22 46 varskip-0317-1_01_LEFT 0 + GGTAACAAACCAACCAACTTTCGA -MN908947.3 418 443 varskip-0317-1_02_LEFT 1 + GGCTTAGTAGAAGTTGAAAAAGGCG -MN908947.3 559 581 varskip-0317-1_01_RIGHT 0 - CACCAAGTGTCTCACCACTACG -MN908947.3 841 863 varskip-0317-1_03_LEFT 0 + CCTGATGGCTACCCTCTTGAGT -MN908947.3 976 998 varskip-0317-1_02_RIGHT 1 - AACGTTCCGTGTACCAAGCAAT -MN908947.3 1277 1299 varskip-0317-1_04_LEFT 1 + AAGCCACTTGCGAATTTTGTGG -MN908947.3 1402 1424 varskip-0317-1_03_RIGHT 0 - ATTCGGCAAGACTATGCTCAGG -MN908947.3 1695 1717 varskip-0317-1_05_LEFT 0 + GGCATCTTTTTCTGCTTCCACA -MN908947.3 1821 1844 varskip-0317-1_04_RIGHT 1 - TCTGTTCACCAATATTCCAGGCA -MN908947.3 2061 2086 varskip-0317-1_06_LEFT 1 + CTACATTACAGGTGGTGTTGTTCAG -MN908947.3 2228 2250 varskip-0317-1_05_RIGHT 0 - CCACCGACAATTTCACAAGCAC -MN908947.3 2483 2508 varskip-0317-1_07_LEFT 0 + TCTTCTTAGAGGGAGAAACACTTCC -MN908947.3 2621 2643 varskip-0317-1_06_RIGHT 1 - ATTTCGAGCAACATAAGCCCGT -MN908947.3 2923 2947 varskip-0317-1_08_LEFT 1 + TCTGAATTACTTACACCACTGGGC -MN908947.3 3043 3067 varskip-0317-1_07_RIGHT 0 - ACCTTCTTCTTCATCCTCATCTGG -MN908947.3 3326 3355 varskip-0317-1_09_LEFT 0 + AGACTATTGAAGTGAATAGTTTTAGTGGT -MN908947.3 3470 3492 varskip-0317-1_08_RIGHT 1 - TTTAAGGCTCCTGCAACACCTC -MN908947.3 3753 3778 varskip-0317-1_10_LEFT 1 + AGTTTGTGTAGATACTGTTCGCACA -MN908947.3 3887 3915 varskip-0317-1_09_RIGHT 0 - TCAGTTATAAATGGCTTAACTTCCTCTT -MN908947.3 4154 4180 varskip-0317-1_11_LEFT 0 + CTGCTGTGGTTATACCTACTAAAAAG -MN908947.3 4296 4322 varskip-0317-1_10_RIGHT 1 - AGGCACTTTTACACTTTTTAAGCACT -MN908947.3 4594 4617 varskip-0317-1_12_LEFT 1 + ACTCTTGTTACAATGCCACTTGG -MN908947.3 4714 4743 varskip-0317-1_11_RIGHT 0 - GAAGAAGTAAGATAACCATTATACGCTGT -MN908947.3 5006 5028 varskip-0317-1_13_LEFT 0 + CGCAAGTTGTGGACATGTCAAT -MN908947.3 5145 5168 varskip-0317-1_12_RIGHT 1 - AGTACTCAAAAGCCTCAACACGT -MN908947.3 5340 5366 varskip-0317-1_14_LEFT 1 + ACCTGCTCTACAAGATGCTTATTACA -MN908947.3 5555 5580 varskip-0317-1_13_RIGHT 0 - CCCATGTACATAACAGCTTCTACAC -MN908947.3 5794 5817 varskip-0317-1_15_LEFT 0 + ACTTTGTATTGCATAGACGGTGC -MN908947.3 5987 6011 varskip-0317-1_14_RIGHT 1 - GTACAAGATCAATTGGTTGCTCTG -MN908947.3 6217 6245 varskip-0317-1_16_LEFT 1 + TTGTTACATAAACCTATTGTTTGGCATG -MN908947.3 6341 6363 varskip-0317-1_15_RIGHT 0 - GCGTCCTCTGACTTCAGTACAT -MN908947.3 6561 6594 varskip-0317-1_17_LEFT 0 + TGTAGACAATTCTAGTCTTACTATTAAGAAACC -MN908947.3 6749 6776 varskip-0317-1_16_RIGHT 1 - AAGGCATATAATTAGTACAAACACGGT -MN908947.3 7000 7022 varskip-0317-1_18_LEFT 1 + TCAACCGCTGCTTTAGGTGTTT -MN908947.3 7124 7151 varskip-0317-1_17_RIGHT 0 - CTAAACCACTAAGACAAACACTACAAG -MN908947.3 7403 7429 varskip-0317-1_19_LEFT 0 + TGGTTAGAATGTACATCTTCTTTGCA -MN908947.3 7547 7574 varskip-0317-1_18_RIGHT 1 - AGACATAAAAGGACCTTCTAACACCAT -MN908947.3 7851 7883 varskip-0317-1_20_LEFT 1 + TAATAACACTAAAGGTTCATTGCCTATTAATG -MN908947.3 7984 8007 varskip-0317-1_19_RIGHT 0 - CCAACATCAGACACTAATGCCTG -MN908947.3 8245 8269 varskip-0317-1_21_LEFT 0 + TCTGACATAGAAGTTACTGGCGAT -MN908947.3 8348 8370 varskip-0317-1_20_RIGHT 1 - TGCGCATTAATATGACGCGCAC -MN908947.3 8685 8709 varskip-0317-1_22_LEFT 1 + AGGATACAAGGCTATTGATGGTGG -MN908947.3 8818 8843 varskip-0317-1_21_RIGHT 0 - TTGTTATGACTGCAGCAATCAATGG -MN908947.3 9099 9121 varskip-0317-1_23_LEFT 0 + TGAAAGTTTACGCCCTGACACA -MN908947.3 9221 9243 varskip-0317-1_22_RIGHT 1 - TCTGATCTTTCACAAGTGCCGT -MN908947.3 9478 9502 varskip-0317-1_24_LEFT 1 + GGTGAATACAGTCATGTAGTTGCC -MN908947.3 9644 9667 varskip-0317-1_23_RIGHT 0 - AGGTGTGAACATAACCATCCACT -MN908947.3 9842 9865 varskip-0317-1_25_LEFT 0 + TGCGTAGTGATGTGCTATTACCT -MN908947.3 10039 10061 varskip-0317-1_24_RIGHT 1 - AACCACTCTGCAAAACAGCTGA -MN908947.3 10269 10293 varskip-0317-1_26_LEFT 1 + TGTTCAACTCAGGGTTATTGGACA -MN908947.3 10396 10422 varskip-0317-1_25_RIGHT 0 - GATGGTGAACCATTGTAACAAGCTAA -MN908947.3 10696 10719 varskip-0317-1_27_LEFT 0 + GGAGACAGGTGGTTTCTCAATCG -MN908947.3 10816 10838 varskip-0317-1_26_RIGHT 1 - AAACGGCAATTCCAGTTTGAGC -MN908947.3 11092 11116 varskip-0317-1_28_LEFT 1 + GCCTTTTTACCTTTTGCTATGGGT -MN908947.3 11243 11268 varskip-0317-1_27_RIGHT 0 - TCCAACCATGTCATAATACGCATCA -MN908947.3 11371 11393 varskip-0317-1_29_LEFT 0 + GATGGTGCTAGGAGAGTGTGGA -MN908947.3 11647 11670 varskip-0317-1_28_RIGHT 1 - CGGTTGAGTAAACAAAAGAGGCC -MN908947.3 11824 11851 varskip-0317-1_30_LEFT 1 + AAAGTAGCCACTGTACAGTCTAAAATG -MN908947.3 11921 11943 varskip-0317-1_29_RIGHT 0 - TGGACACATTGAGCCCACAATT -MN908947.3 12201 12226 varskip-0317-1_31_LEFT 0 + GTTGAAGAAGTCTTTGAATGTGGCT -MN908947.3 12329 12353 varskip-0317-1_30_RIGHT 1 - GCATAGCACTAGTAACTTTTGCCC -MN908947.3 12632 12656 varskip-0317-1_32_LEFT 1 + CATGGCCTCTTATTGTAACAGCTT -MN908947.3 12752 12774 varskip-0317-1_31_RIGHT 0 - GCTAACGCATTGTCATCAGTGC -MN908947.3 13034 13058 varskip-0317-1_33_LEFT 0 + CAACAGAAGTGCCTGCCAATTCAA -MN908947.3 13166 13188 varskip-0317-1_32_RIGHT 1 - ATTGCCTGACCAGTACCAGTGT -MN908947.3 13479 13501 varskip-0317-1_34_LEFT 1 + GTAAGTGCAGCCCGTCTTACAC -MN908947.3 13599 13621 varskip-0317-1_33_RIGHT 0 - CGTCCTTTTCTTGGAAGCGACA -MN908947.3 13874 13901 varskip-0317-1_35_LEFT 0 + ACTTGTCACATACAATTGTTGTGATGA -MN908947.3 14009 14031 varskip-0317-1_34_RIGHT 1 - TCGCATGGCATCACAGAATTGT -MN908947.3 14290 14319 varskip-0317-1_36_LEFT 1 + ACCGTTATTTTAAATATTGGGATCAGACA -MN908947.3 14417 14444 varskip-0317-1_35_RIGHT 0 - ACAAATATTTTTCTCACTAGTGGTCCA -MN908947.3 14651 14675 varskip-0317-1_37_LEFT 0 + TGTTGCTTTTCAAACTGTCAAACC -MN908947.3 14826 14855 varskip-0317-1_36_RIGHT 1 - ACAAATAGTAGTTGTCTGATATCACACAT -MN908947.3 15064 15091 varskip-0317-1_38_LEFT 1 + TGAATCTTAAGTATGCCATTAGTGCAA -MN908947.3 15191 15217 varskip-0317-1_37_RIGHT 0 - TGCTTGTTCCAATTACTACAGTAGCT -MN908947.3 15428 15450 varskip-0317-1_39_LEFT 0 + GAGTGAAATGGTCATGTGTGGC -MN908947.3 15598 15622 varskip-0317-1_38_RIGHT 1 - AAAGTCTGTGTTGTAAATTGCGGA -MN908947.3 15862 15887 varskip-0317-1_40_LEFT 1 + GACCTCATGAATTTTGCTCTCAACA -MN908947.3 16007 16029 varskip-0317-1_39_RIGHT 0 - AGCTAAAGACACGAACCGTTCA -MN908947.3 16277 16299 varskip-0317-1_41_LEFT 0 + AAGATGTGGTGCTTGCATACGT -MN908947.3 16416 16443 varskip-0317-1_40_RIGHT 1 - GCTCATACCTCCTAAGTAAAGTTGAGT -MN908947.3 16689 16711 varskip-0317-1_42_LEFT 1 + GCTACTGTACGTGAAGTGCTGT -MN908947.3 16842 16865 varskip-0317-1_41_RIGHT 0 - ACAACAGCATCACCATAGTCACC -MN908947.3 17057 17082 varskip-0317-1_43_LEFT 0 + GCAAAAGTATTCTACACTCCAGGGA -MN908947.3 17244 17266 varskip-0317-1_42_RIGHT 1 - CAAAACAATCTACACGAGCACG -MN908947.3 17476 17500 varskip-0317-1_44_LEFT 1 + AGGGCACACTAGAACCAGAATATT -MN908947.3 17621 17646 varskip-0317-1_43_RIGHT 0 - TTGAGCTGATTTGTCTTTATGTGCT -MN908947.3 17889 17915 varskip-0317-1_45_LEFT 0 + ACAGCTCACTCTTGTAATGTAAACAG -MN908947.3 18033 18059 varskip-0317-1_44_RIGHT 1 - AGTCCTGTTACATTTTCAGCTTGTAA -MN908947.3 18311 18333 varskip-0317-1_46_LEFT 1 + CGAGGGGTGTCATGCTACTAGA -MN908947.3 18441 18463 varskip-0317-1_45_RIGHT 0 - GCGGTGGTTTAGCACTAACTCT -MN908947.3 18712 18737 varskip-0317-1_47_LEFT 0 + CCTGTTGGCATCATTCTATTGGATT -MN908947.3 18852 18876 varskip-0317-1_46_RIGHT 1 - ACACCTAGTCATGATTGCATCACA -MN908947.3 19098 19125 varskip-0317-1_48_LEFT 1 + CAGCCTTGTAGTGACAAAGCTTATAAA -MN908947.3 19247 19273 varskip-0317-1_47_RIGHT 0 - GCAAGTTAAGGTTAGATAGCACTCTA -MN908947.3 19488 19515 varskip-0317-1_49_LEFT 0 + TGTAGACATCATGCTAATGAGTACAGA -MN908947.3 19623 19655 varskip-0317-1_48_RIGHT 1 - TTATTTACAACATTAAAAGCCACATTTTCTAA -MN908947.3 19885 19911 varskip-0317-1_50_LEFT 1 + AAAGAGATGCTCCAGCACATATATCT -MN908947.3 20037 20064 varskip-0317-1_49_RIGHT 0 - AACACTACCTTCTGTAATAAGAACACC -MN908947.3 20340 20366 varskip-0317-1_51_LEFT 0 + AGTCATAGTCAGTTAGGTGGTTTACA -MN908947.3 20462 20484 varskip-0317-1_50_RIGHT 1 - AGATGAACCTGTTTGCGCATCT -MN908947.3 20766 20792 varskip-0317-1_52_LEFT 1 + CCTAAAGGCATAATGATGAATGTCGC -MN908947.3 20890 20912 varskip-0317-1_51_RIGHT 0 - AAAACAGCTGTACCTGGTGCAA -MN908947.3 21194 21219 varskip-0317-1_53_LEFT 0 + TCTTTATAAGCTCATGGGACACTTC -MN908947.3 21314 21338 varskip-0317-1_52_RIGHT 1 - TTTGCATGCATGACATAACCATCT -MN908947.3 21537 21566 varskip-0317-1_54_LEFT 1 + GTTCTTGTTAACAACTAAACGAACAATGT -MN908947.3 21724 21753 varskip-0317-1_53_RIGHT 0 - CAAGTAACATTGGAAAAGAAAGGTAAGAA -MN908947.3 21926 21955 varskip-0317-1_55_LEFT 0 + ACGCTACTAATGTTGTTATTAAAGTCTGT -MN908947.3 22091 22113 varskip-0317-1_54_RIGHT 1 - CCCTGTTTTCCTTCAAGGTCCA -MN908947.3 22347 22373 varskip-0317-1_56_LEFT 1 + TGCAGCTTATTATGTGGGTTATCTTC -MN908947.3 22480 22510 varskip-0317-1_55_RIGHT 0 - AGAAGTTTGATAGATTCCTTTTTCTACAGT -MN908947.3 22749 22776 varskip-0317-1_57_LEFT 0 + TGCAGATTCATTTGTAATTAGAGGTGA -MN908947.3 22853 22877 varskip-0317-1_56_RIGHT 1 - TAGAATTCCAAGCTATAACGCAGC -MN908947.3 23122 23144 varskip-0317-1_58_LEFT 1 + CCAGCAACTGTTTGTGGACCTA -MN908947.3 23288 23310 varskip-0317-1_57_RIGHT 0 - TCAAGTGTCTGTGGATCACGGA -MN908947.3 23545 23567 varskip-0317-1_59_LEFT 0 + TGTGACATACCCATTGGTGCAG -MN908947.3 23681 23708 varskip-0317-1_58_RIGHT 1 - TGGGTATGGCAATAGAGTTATTAGAGT -MN908947.3 23979 24002 varskip-0317-1_60_LEFT 1 + ACCAGATCCATCAAAACCAAGCA -MN908947.3 24103 24129 varskip-0317-1_59_RIGHT 0 - TTAAACTTTTGTGCACAAATGAGGTC -MN908947.3 24375 24397 varskip-0317-1_61_LEFT 0 + TTCTTCCACAGCAAGTGCACTT -MN908947.3 24518 24541 varskip-0317-1_60_RIGHT 1 - AATTTGCACTTCAGCCTCAACTT -MN908947.3 24789 24811 varskip-0317-1_62_LEFT 1 + AACTGCTCCTGCCATTTGTCAT -MN908947.3 24924 24948 varskip-0317-1_61_RIGHT 0 - ACAACATCACAGTTACCAGACACA -MN908947.3 25171 25200 varskip-0317-1_63_LEFT 0 + GGAAAGTATGAGCAGTATATAAAATGGCC -MN908947.3 25331 25353 varskip-0317-1_62_RIGHT 1 - ACTGGCTCAGAGTCGTCTTCAT -MN908947.3 25526 25548 varskip-0317-1_64_LEFT 1 + GCTTATTGTTGGCGTTGCACTT -MN908947.3 25725 25754 varskip-0317-1_63_RIGHT 0 - ACAAAGTTTATACTCTGCAAGAAGTAGAC -MN908947.3 25970 25995 varskip-0317-1_65_LEFT 0 + GGAATCTGGAGTAAAAGACTGTGTT -MN908947.3 26120 26143 varskip-0317-1_64_RIGHT 1 - CGTCGATTGTGTGAATTTGGACA -MN908947.3 26359 26381 varskip-0317-1_66_LEFT 1 + TGTGTGCGTACTGCTGCAATAT -MN908947.3 26497 26525 varskip-0317-1_65_RIGHT 0 - CATGGCTAAAATTAAAGTTCCAAACAGA -MN908947.3 26682 26705 varskip-0317-1_67_LEFT 0 + TCTGGCTGTTATGGCCAGTAACT -MN908947.3 26905 26927 varskip-0317-1_66_RIGHT 1 - TTCTAGAAGCGGTCTGGTCAGA -MN908947.3 27081 27103 varskip-0317-1_68_LEFT 1 + TAGCAGGTGACTCAGGTTTTGC -MN908947.3 27259 27288 varskip-0317-1_67_RIGHT 0 - AAGATTCCAAATGGAAACTTTAAAAGTCC -MN908947.3 27485 27511 varskip-0317-1_69_LEFT 0 + AAAAGAACCTTGCTCTTCTGGAACAT -MN908947.3 27647 27671 varskip-0317-1_68_RIGHT 1 - ACTTCCTCTTGTCTGATGAACAGT -MN908947.3 27835 27859 varskip-0317-1_70_LEFT 1 + CTTTTGGTTCTCACTTGAACTGCA -MN908947.3 28051 28076 varskip-0317-1_69_RIGHT 0 - GCACAATTCAATTAAAGGTGCTGAT -MN908947.3 28219 28243 varskip-0317-1_71_LEFT 0 + AGAGTATCATGACGTTCGTGTTGT -MN908947.3 28380 28400 varskip-0317-1_70_RIGHT 1 - GGGGCCGACGTTGTTTTGAT -MN908947.3 28627 28649 varskip-0317-1_72_LEFT 1 + GCTGGACTTCCCTATGGTGCTA -MN908947.3 28783 28805 varskip-0317-1_71_RIGHT 0 - CTCTGCTCCCTTCTGCGTAGAA -MN908947.3 29062 29088 varskip-0317-1_73_LEFT 0 + GCCACTAAAGCATACAATGTAACACA -MN908947.3 29203 29225 varskip-0317-1_72_RIGHT 1 - ACATTCCGAAGAACGCTGAAGC -MN908947.3 29270 29292 varskip-0317-1_74_LEFT 1 + ACACAGGTGCCATCAAATTGGA -MN908947.3 29617 29644 varskip-0317-1_73_RIGHT 0 - TTGTGCTATGTAGTTACGAGAATTCAT -MN908947.3 29799 29831 varskip-0317-1_74_RIGHT 1 - GCACTACTAAAATTAATTTTACACATTAGGGC diff --git a/sars-cov-2/varskip/vss2a/reference.fasta b/sars-cov-2/varskip/vss2a/reference.fasta deleted file mode 100644 index 4072957..0000000 --- a/sars-cov-2/varskip/vss2a/reference.fasta +++ /dev/null @@ -1,500 +0,0 @@ ->MN908947.3 -ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT -GTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACT -CACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC -TTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTT -CGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAAC -ACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGG -AGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATGGCACTTGTGG -CTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAA -ACGTTCGGATGCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACT -CGAAGGCATTCAGTACGGTCGTAGTGGTGAGACACTTGGTGTCCTTGTCCCTCATGTGGG -CGAAATACCAGTGGCTTACCGCAAGGTTCTTCTTCGTAAGAACGGTAATAAAGGAGCTGG -TGGCCATAGTTACGGCGCCGATCTAAAGTCATTTGACTTAGGCGACGAGCTTGGCACTGA -TCCTTATGAAGATTTTCAAGAAAACTGGAACACTAAACATAGCAGTGGTGTTACCCGTGA -ACTCATGCGTGAGCTTAACGGAGGGGCATACACTCGCTATGTCGATAACAACTTCTGTGG -CCCTGATGGCTACCCTCTTGAGTGCATTAAAGACCTTCTAGCACGTGCTGGTAAAGCTTC -ATGCACTTTGTCCGAACAACTGGACTTTATTGACACTAAGAGGGGTGTATACTGCTGCCG -TGAACATGAGCATGAAATTGCTTGGTACACGGAACGTTCTGAAAAGAGCTATGAATTGCA -GACACCTTTTGAAATTAAATTGGCAAAGAAATTTGACACCTTCAATGGGGAATGTCCAAA -TTTTGTATTTCCCTTAAATTCCATAATCAAGACTATTCAACCAAGGGTTGAAAAGAAAAA -GCTTGATGGCTTTATGGGTAGAATTCGATCTGTCTATCCAGTTGCGTCACCAAATGAATG -CAACCAAATGTGCCTTTCAACTCTCATGAAGTGTGATCATTGTGGTGAAACTTCATGGCA -GACGGGCGATTTTGTTAAAGCCACTTGCGAATTTTGTGGCACTGAGAATTTGACTAAAGA -AGGTGCCACTACTTGTGGTTACTTACCCCAAAATGCTGTTGTTAAAATTTATTGTCCAGC -ATGTCACAATTCAGAAGTAGGACCTGAGCATAGTCTTGCCGAATACCATAATGAATCTGG -CTTGAAAACCATTCTTCGTAAGGGTGGTCGCACTATTGCCTTTGGAGGCTGTGTGTTCTC -TTATGTTGGTTGCCATAACAAGTGTGCCTATTGGGTTCCACGTGCTAGCGCTAACATAGG -TTGTAACCATACAGGTGTTGTTGGAGAAGGTTCCGAAGGTCTTAATGACAACCTTCTTGA -AATACTCCAAAAAGAGAAAGTCAACATCAATATTGTTGGTGACTTTAAACTTAATGAAGA -GATCGCCATTATTTTGGCATCTTTTTCTGCTTCCACAAGTGCTTTTGTGGAAACTGTGAA -AGGTTTGGATTATAAAGCATTCAAACAAATTGTTGAATCCTGTGGTAATTTTAAAGTTAC -AAAAGGAAAAGCTAAAAAAGGTGCCTGGAATATTGGTGAACAGAAATCAATACTGAGTCC -TCTTTATGCATTTGCATCAGAGGCTGCTCGTGTTGTACGATCAATTTTCTCCCGCACTCT -TGAAACTGCTCAAAATTCTGTGCGTGTTTTACAGAAGGCCGCTATAACAATACTAGATGG -AATTTCACAGTATTCACTGAGACTCATTGATGCTATGATGTTCACATCTGATTTGGCTAC -TAACAATCTAGTTGTAATGGCCTACATTACAGGTGGTGTTGTTCAGTTGACTTCGCAGTG -GCTAACTAACATCTTTGGCACTGTTTATGAAAAACTCAAACCCGTCCTTGATTGGCTTGA -AGAGAAGTTTAAGGAAGGTGTAGAGTTTCTTAGAGACGGTTGGGAAATTGTTAAATTTAT -CTCAACCTGTGCTTGTGAAATTGTCGGTGGACAAATTGTCACCTGTGCAAAGGAAATTAA -GGAGAGTGTTCAGACATTCTTTAAGCTTGTAAATAAATTTTTGGCTTTGTGTGCTGACTC -TATCATTATTGGTGGAGCTAAACTTAAAGCCTTGAATTTAGGTGAAACATTTGTCACGCA -CTCAAAGGGATTGTACAGAAAGTGTGTTAAATCCAGAGAAGAAACTGGCCTACTCATGCC -TCTAAAAGCCCCAAAAGAAATTATCTTCTTAGAGGGAGAAACACTTCCCACAGAAGTGTT -AACAGAGGAAGTTGTCTTGAAAACTGGTGATTTACAACCATTAGAACAACCTACTAGTGA -AGCTGTTGAAGCTCCATTGGTTGGTACACCAGTTTGTATTAACGGGCTTATGTTGCTCGA -AATCAAAGACACAGAAAAGTACTGTGCCCTTGCACCTAATATGATGGTAACAAACAATAC -CTTCACACTCAAAGGCGGTGCACCAACAAAGGTTACTTTTGGTGATGACACTGTGATAGA -AGTGCAAGGTTACAAGAGTGTGAATATCACTTTTGAACTTGATGAAAGGATTGATAAAGT -ACTTAATGAGAAGTGCTCTGCCTATACAGTTGAACTCGGTACAGAAGTAAATGAGTTCGC -CTGTGTTGTGGCAGATGCTGTCATAAAAACTTTGCAACCAGTATCTGAATTACTTACACC -ACTGGGCATTGATTTAGATGAGTGGAGTATGGCTACATACTACTTATTTGATGAGTCTGG -TGAGTTTAAATTGGCTTCACATATGTATTGTTCTTTCTACCCTCCAGATGAGGATGAAGA -AGAAGGTGATTGTGAAGAAGAAGAGTTTGAGCCATCAACTCAATATGAGTATGGTACTGA -AGATGATTACCAAGGTAAACCTTTGGAATTTGGTGCCACTTCTGCTGCTCTTCAACCTGA -AGAAGAGCAAGAAGAAGATTGGTTAGATGATGATAGTCAACAAACTGTTGGTCAACAAGA -CGGCAGTGAGGACAATCAGACAACTACTATTCAAACAATTGTTGAGGTTCAACCTCAATT -AGAGATGGAACTTACACCAGTTGTTCAGACTATTGAAGTGAATAGTTTTAGTGGTTATTT -AAAACTTACTGACAATGTATACATTAAAAATGCAGACATTGTGGAAGAAGCTAAAAAGGT -AAAACCAACAGTGGTTGTTAATGCAGCCAATGTTTACCTTAAACATGGAGGAGGTGTTGC -AGGAGCCTTAAATAAGGCTACTAACAATGCCATGCAAGTTGAATCTGATGATTACATAGC -TACTAATGGACCACTTAAAGTGGGTGGTAGTTGTGTTTTAAGCGGACACAATCTTGCTAA -ACACTGTCTTCATGTTGTCGGCCCAAATGTTAACAAAGGTGAAGACATTCAACTTCTTAA -GAGTGCTTATGAAAATTTTAATCAGCACGAAGTTCTACTTGCACCATTATTATCAGCTGG -TATTTTTGGTGCTGACCCTATACATTCTTTAAGAGTTTGTGTAGATACTGTTCGCACAAA -TGTCTACTTAGCTGTCTTTGATAAAAATCTCTATGACAAACTTGTTTCAAGCTTTTTGGA -AATGAAGAGTGAAAAGCAAGTTGAACAAAAGATCGCTGAGATTCCTAAAGAGGAAGTTAA -GCCATTTATAACTGAAAGTAAACCTTCAGTTGAACAGAGAAAACAAGATGATAAGAAAAT -CAAAGCTTGTGTTGAAGAAGTTACAACAACTCTGGAAGAAACTAAGTTCCTCACAGAAAA -CTTGTTACTTTATATTGACATTAATGGCAATCTTCATCCAGATTCTGCCACTCTTGTTAG -TGACATTGACATCACTTTCTTAAAGAAAGATGCTCCATATATAGTGGGTGATGTTGTTCA -AGAGGGTGTTTTAACTGCTGTGGTTATACCTACTAAAAAGGCTGGTGGCACTACTGAAAT -GCTAGCGAAAGCTTTGAGAAAAGTGCCAACAGACAATTATATAACCACTTACCCGGGTCA -GGGTTTAAATGGTTACACTGTAGAGGAGGCAAAGACAGTGCTTAAAAAGTGTAAAAGTGC -CTTTTACATTCTACCATCTATTATCTCTAATGAGAAGCAAGAAATTCTTGGAACTGTTTC -TTGGAATTTGCGAGAAATGCTTGCACATGCAGAAGAAACACGCAAATTAATGCCTGTCTG -TGTGGAAACTAAAGCCATAGTTTCAACTATACAGCGTAAATATAAGGGTATTAAAATACA -AGAGGGTGTGGTTGATTATGGTGCTAGATTTTACTTTTACACCAGTAAAACAACTGTAGC -GTCACTTATCAACACACTTAACGATCTAAATGAAACTCTTGTTACAATGCCACTTGGCTA -TGTAACACATGGCTTAAATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCC -AGCTACAGTTTCTGTTTCTTCACCTGATGCTGTTACAGCGTATAATGGTTATCTTACTTC -TTCTTCTAAAACACCTGAAGAACATTTTATTGAAACCATCTCACTTGCTGGTTCCTATAA -AGATTGGTCCTATTCTGGACAATCTACACAACTAGGTATAGAATTTCTTAAGAGAGGTGA -TAAAAGTGTATATTACACTAGTAATCCTACCACATTCCACCTAGATGGTGAAGTTATCAC -CTTTGACAATCTTAAGACACTTCTTTCTTTGAGAGAAGTGAGGACTATTAAGGTGTTTAC -AACAGTAGACAACATTAACCTCCACACGCAAGTTGTGGACATGTCAATGACATATGGACA -ACAGTTTGGTCCAACTTATTTGGATGGAGCTGATGTTACTAAAATAAAACCTCATAATTC -ACATGAAGGTAAAACATTTTATGTTTTACCTAATGATGACACTCTACGTGTTGAGGCTTT -TGAGTACTACCACACAACTGATCCTAGTTTTCTGGGTAGGTACATGTCAGCATTAAATCA -CACTAAAAAGTGGAAATACCCACAAGTTAATGGTTTAACTTCTATTAAATGGGCAGATAA -CAACTGTTATCTTGCCACTGCATTGTTAACACTCCAACAAATAGAGTTGAAGTTTAATCC -ACCTGCTCTACAAGATGCTTATTACAGAGCAAGGGCTGGTGAAGCTGCTAACTTTTGTGC -ACTTATCTTAGCCTACTGTAATAAGACAGTAGGTGAGTTAGGTGATGTTAGAGAAACAAT -GAGTTACTTGTTTCAACATGCCAATTTAGATTCTTGCAAAAGAGTCTTGAACGTGGTGTG -TAAAACTTGTGGACAACAGCAGACAACCCTTAAGGGTGTAGAAGCTGTTATGTACATGGG -CACACTTTCTTATGAACAATTTAAGAAAGGTGTTCAGATACCTTGTACGTGTGGTAAACA -AGCTACAAAATATCTAGTACAACAGGAGTCACCTTTTGTTATGATGTCAGCACCACCTGC -TCAGTATGAACTTAAGCATGGTACATTTACTTGTGCTAGTGAGTACACTGGTAATTACCA -GTGTGGTCACTATAAACATATAACTTCTAAAGAAACTTTGTATTGCATAGACGGTGCTTT -ACTTACAAAGTCCTCAGAATACAAAGGTCCTATTACGGATGTTTTCTACAAAGAAAACAG -TTACACAACAACCATAAAACCAGTTACTTATAAATTGGATGGTGTTGTTTGTACAGAAAT -TGACCCTAAGTTGGACAATTATTATAAGAAAGACAATTCTTATTTCACAGAGCAACCAAT -TGATCTTGTACCAAACCAACCATATCCAAACGCAAGCTTCGATAATTTTAAGTTTGTATG -TGATAATATCAAATTTGCTGATGATTTAAACCAGTTAACTGGTTATAAGAAACCTGCTTC -AAGAGAGCTTAAAGTTACATTTTTCCCTGACTTAAATGGTGATGTGGTGGCTATTGATTA -TAAACACTACACACCCTCTTTTAAGAAAGGAGCTAAATTGTTACATAAACCTATTGTTTG -GCATGTTAACAATGCAACTAATAAAGCCACGTATAAACCAAATACCTGGTGTATACGTTG -TCTTTGGAGCACAAAACCAGTTGAAACATCAAATTCGTTTGATGTACTGAAGTCAGAGGA -CGCGCAGGGAATGGATAATCTTGCCTGCGAAGATCTAAAACCAGTCTCTGAAGAAGTAGT -GGAAAATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGT -AGGAGACATTATACTTAAACCAGCAAATAATAGTTTAAAAATTACAGAAGAGGTTGGCCA -CACAGATCTAATGGCTGCTTATGTAGACAATTCTAGTCTTACTATTAAGAAACCTAATGA -ATTATCTAGAGTATTAGGTTTGAAAACCCTTGCTACTCATGGTTTAGCTGCTGTTAATAG -TGTCCCTTGGGATACTATAGCTAATTATGCTAAGCCTTTTCTTAACAAAGTTGTTAGTAC -AACTACTAACATAGTTACACGGTGTTTAAACCGTGTTTGTACTAATTATATGCCTTATTT -CTTTACTTTATTGCTACAATTGTGTACTTTTACTAGAAGTACAAATTCTAGAATTAAAGC -ATCTATGCCGACTACTATAGCAAAGAATACTGTTAAGAGTGTCGGTAAATTTTGTCTAGA -GGCTTCATTTAATTATTTGAAGTCACCTAATTTTTCTAAACTGATAAATATTATAATTTG -GTTTTTACTATTAAGTGTTTGCCTAGGTTCTTTAATCTACTCAACCGCTGCTTTAGGTGT -TTTAATGTCTAATTTAGGCATGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAA -CTCTACTAATGTCACTATTGCAACCTACTGTACTGGTTCTATACCTTGTAGTGTTTGTCT -TAGTGGTTTAGATTCTTTAGACACCTATCCTTCTTTAGAAACTATACAAATTACCATTTC -ATCTTTTAAATGGGATTTAACTGCTTTTGGCTTAGTTGCAGAGTGGTTTTTGGCATATAT -TCTTTTCACTAGGTTTTTCTATGTACTTGGATTGGCTGCAATCATGCAATTGTTTTTCAG -CTATTTTGCAGTACATTTTATTAGTAATTCTTGGCTTATGTGGTTAATAATTAATCTTGT -ACAAATGGCCCCGATTTCAGCTATGGTTAGAATGTACATCTTCTTTGCATCATTTTATTA -TGTATGGAAAAGTTATGTGCATGTTGTAGACGGTTGTAATTCATCAACTTGTATGATGTG -TTACAAACGTAATAGAGCAACAAGAGTCGAATGTACAACTATTGTTAATGGTGTTAGAAG -GTCCTTTTATGTCTATGCTAATGGAGGTAAAGGCTTTTGCAAACTACACAATTGGAATTG -TGTTAATTGTGATACATTCTGTGCTGGTAGTACATTTATTAGTGATGAAGTTGCGAGAGA -CTTGTCACTACAGTTTAAAAGACCAATAAATCCTACTGACCAGTCTTCTTACATCGTTGA -TAGTGTTACAGTGAAGAATGGTTCCATCCATCTTTACTTTGATAAAGCTGGTCAAAAGAC -TTATGAAAGACATTCTCTCTCTCATTTTGTTAACTTAGACAACCTGAGAGCTAATAACAC -TAAAGGTTCATTGCCTATTAATGTTATAGTTTTTGATGGTAAATCAAAATGTGAAGAATC -ATCTGCAAAATCAGCGTCTGTTTACTACAGTCAGCTTATGTGTCAACCTATACTGTTACT -AGATCAGGCATTAGTGTCTGATGTTGGTGATAGTGCGGAAGTTGCAGTTAAAATGTTTGA -TGCTTACGTTAATACGTTTTCATCAACTTTTAACGTACCAATGGAAAAACTCAAAACACT -AGTTGCAACTGCAGAAGCTGAACTTGCAAAGAATGTGTCCTTAGACAATGTCTTATCTAC -TTTTATTTCAGCAGCTCGGCAAGGGTTTGTTGATTCAGATGTAGAAACTAAAGATGTTGT -TGAATGTCTTAAATTGTCACATCAATCTGACATAGAAGTTACTGGCGATAGTTGTAATAA -CTATATGCTCACCTATAACAAAGTTGAAAACATGACACCCCGTGACCTTGGTGCTTGTAT -TGACTGTAGTGCGCGTCATATTAATGCGCAGGTAGCAAAAAGTCACAACATTGCTTTGAT -ATGGAACGTTAAAGATTTCATGTCATTGTCTGAACAACTACGAAAACAAATACGTAGTGC -TGCTAAAAAGAATAACTTACCTTTTAAGTTGACATGTGCAACTACTAGACAAGTTGTTAA -TGTTGTAACAACAAAGATAGCACTTAAGGGTGGTAAAATTGTTAATAATTGGTTGAAGCA -GTTAATTAAAGTTACACTTGTGTTCCTTTTTGTTGCTGCTATTTTCTATTTAATAACACC -TGTTCATGTCATGTCTAAACATACTGACTTTTCAAGTGAAATCATAGGATACAAGGCTAT -TGATGGTGGTGTCACTCGTGACATAGCATCTACAGATACTTGTTTTGCTAACAAACATGC -TGATTTTGACACATGGTTTAGCCAGCGTGGTGGTAGTTATACTAATGACAAAGCTTGCCC -ATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCAC -GATATTACGCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGT -TGGTAACATCTGTTACACACCATCAAAACTTATAGAGTACACTGACTTTGCAACATCAGC -TTGTGTTTTGGCTGCTGAATGTACAATTTTTAAAGATGCTTCTGGTAAGCCAGTACCATA -TTGTTATGATACCAATGTACTAGAAGGTTCTGTTGCTTATGAAAGTTTACGCCCTGACAC -ACGTTATGTGCTCATGGATGGCTCTATTATTCAATTTCCTAACACCTACCTTGAAGGTTC -TGTTAGAGTGGTAACAACTTTTGATTCTGAGTACTGTAGGCACGGCACTTGTGAAAGATC -AGAAGCTGGTGTTTGTGTATCTACTAGTGGTAGATGGGTACTTAACAATGATTATTACAG -ATCTTTACCAGGAGTTTTCTGTGGTGTAGATGCTGTAAATTTACTTACTAATATGTTTAC -ACCACTAATTCAACCTATTGGTGCTTTGGACATATCAGCATCTATAGTAGCTGGTGGTAT -TGTAGCTATCGTAGTAACATGCCTTGCCTACTATTTTATGAGGTTTAGAAGAGCTTTTGG -TGAATACAGTCATGTAGTTGCCTTTAATACTTTACTATTCCTTATGTCATTCACTGTACT -CTGTTTAACACCAGTTTACTCATTCTTACCTGGTGTTTATTCTGTTATTTACTTGTACTT -GACATTTTATCTTACTAATGATGTTTCTTTTTTAGCACATATTCAGTGGATGGTTATGTT -CACACCTTTAGTACCTTTCTGGATAACAATTGCTTATATCATTTGTATTTCCACAAAGCA -TTTCTATTGGTTCTTTAGTAATTACCTAAAGAGACGTGTAGTCTTTAATGGTGTTTCCTT -TAGTACTTTTGAAGAAGCTGCGCTGTGCACCTTTTTGTTAAATAAAGAAATGTATCTAAA -GTTGCGTAGTGATGTGCTATTACCTCTTACGCAATATAATAGATACTTAGCTCTTTATAA -TAAGTACAAGTATTTTAGTGGAGCAATGGATACAACTAGCTACAGAGAAGCTGCTTGTTG -TCATCTCGCAAAGGCTCTCAATGACTTCAGTAACTCAGGTTCTGATGTTCTTTACCAACC -ACCACAAACCTCTATCACCTCAGCTGTTTTGCAGAGTGGTTTTAGAAAAATGGCATTCCC -ATCTGGTAAAGTTGAGGGTTGTATGGTACAAGTAACTTGTGGTACAACTACACTTAACGG -TCTTTGGCTTGATGACGTAGTTTACTGTCCAAGACATGTGATCTGCACCTCTGAAGACAT -GCTTAACCCTAATTATGAAGATTTACTCATTCGTAAGTCTAATCATAATTTCTTGGTACA -GGCTGGTAATGTTCAACTCAGGGTTATTGGACATTCTATGCAAAATTGTGTACTTAAGCT -TAAGGTTGATACAGCCAATCCTAAGACACCTAAGTATAAGTTTGTTCGCATTCAACCAGG -ACAGACTTTTTCAGTGTTAGCTTGTTACAATGGTTCACCATCTGGTGTTTACCAATGTGC -TATGAGGCCCAATTTCACTATTAAGGGTTCATTCCTTAATGGTTCATGTGGTAGTGTTGG -TTTTAACATAGATTATGACTGTGTCTCTTTTTGTTACATGCACCATATGGAATTACCAAC -TGGAGTTCATGCTGGCACAGACTTAGAAGGTAACTTTTATGGACCTTTTGTTGACAGGCA -AACAGCACAAGCAGCTGGTACGGACACAACTATTACAGTTAATGTTTTAGCTTGGTTGTA -CGCTGCTGTTATAAATGGAGACAGGTGGTTTCTCAATCGATTTACCACAACTCTTAATGA -CTTTAACCTTGTGGCTATGAAGTACAATTATGAACCTCTAACACAAGACCATGTTGACAT -ACTAGGACCTCTTTCTGCTCAAACTGGAATTGCCGTTTTAGATATGTGTGCTTCATTAAA -AGAATTACTGCAAAATGGTATGAATGGACGTACCATATTGGGTAGTGCTTTATTAGAAGA -TGAATTTACACCTTTTGATGTTGTTAGACAATGCTCAGGTGTTACTTTCCAAAGTGCAGT -GAAAAGAACAATCAAGGGTACACACCACTGGTTGTTACTCACAATTTTGACTTCACTTTT -AGTTTTAGTCCAGAGTACTCAATGGTCTTTGTTCTTTTTTTTGTATGAAAATGCCTTTTT -ACCTTTTGCTATGGGTATTATTGCTATGTCTGCTTTTGCAATGATGTTTGTCAAACATAA -GCATGCATTTCTCTGTTTGTTTTTGTTACCTTCTCTTGCCACTGTAGCTTATTTTAATAT -GGTCTATATGCCTGCTAGTTGGGTGATGCGTATTATGACATGGTTGGATATGGTTGATAC -TAGTTTGTCTGGTTTTAAGCTAAAAGACTGTGTTATGTATGCATCAGCTGTAGTGTTACT -AATCCTTATGACAGCAAGAACTGTGTATGATGATGGTGCTAGGAGAGTGTGGACACTTAT -GAATGTCTTGACACTCGTTTATAAAGTTTATTATGGTAATGCTTTAGATCAAGCCATTTC -CATGTGGGCTCTTATAATCTCTGTTACTTCTAACTACTCAGGTGTAGTTACAACTGTCAT -GTTTTTGGCCAGAGGTATTGTTTTTATGTGTGTTGAGTATTGCCCTATTTTCTTCATAAC -TGGTAATACACTTCAGTGTATAATGCTAGTTTATTGTTTCTTAGGCTATTTTTGTACTTG -TTACTTTGGCCTCTTTTGTTTACTCAACCGCTACTTTAGACTGACTCTTGGTGTTTATGA -TTACTTAGTTTCTACACAGGAGTTTAGATATATGAATTCACAGGGACTACTCCCACCCAA -GAATAGCATAGATGCCTTCAAACTCAACATTAAATTGTTGGGTGTTGGTGGCAAACCTTG -TATCAAAGTAGCCACTGTACAGTCTAAAATGTCAGATGTAAAGTGCACATCAGTAGTCTT -ACTCTCAGTTTTGCAACAACTCAGAGTAGAATCATCATCTAAATTGTGGGCTCAATGTGT -CCAGTTACACAATGACATTCTCTTAGCTAAAGATACTACTGAAGCCTTTGAAAAAATGGT -TTCACTACTTTCTGTTTTGCTTTCCATGCAGGGTGCTGTAGACATAAACAAGCTTTGTGA -AGAAATGCTGGACAACAGGGCAACCTTACAAGCTATAGCCTCAGAGTTTAGTTCCCTTCC -ATCATATGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAGCAGGCTGTTGCTAATGGTGA -TTCTGAAGTTGTTCTTAAAAAGTTGAAGAAGTCTTTGAATGTGGCTAAATCTGAATTTGA -CCGTGATGCAGCCATGCAACGTAAGTTGGAAAAGATGGCTGATCAAGCTATGACCCAAAT -GTATAAACAGGCTAGATCTGAGGACAAGAGGGCAAAAGTTACTAGTGCTATGCAGACAAT -GCTTTTCACTATGCTTAGAAAGTTGGATAATGATGCACTCAACAACATTATCAACAATGC -AAGAGATGGTTGTGTTCCCTTGAACATAATACCTCTTACAACAGCAGCCAAACTAATGGT -TGTCATACCAGACTATAACACATATAAAAATACGTGTGATGGTACAACATTTACTTATGC -ATCAGCATTGTGGGAAATCCAACAGGTTGTAGATGCAGATAGTAAAATTGTTCAACTTAG -TGAAATTAGTATGGACAATTCACCTAATTTAGCATGGCCTCTTATTGTAACAGCTTTAAG -GGCCAATTCTGCTGTCAAATTACAGAATAATGAGCTTAGTCCTGTTGCACTACGACAGAT -GTCTTGTGCTGCCGGTACTACACAAACTGCTTGCACTGATGACAATGCGTTAGCTTACTA -CAACACAACAAAGGGAGGTAGGTTTGTACTTGCACTGTTATCCGATTTACAGGATTTGAA -ATGGGCTAGATTCCCTAAGAGTGATGGAACTGGTACTATCTATACAGAACTGGAACCACC -TTGTAGGTTTGTTACAGACACACCTAAAGGTCCTAAAGTGAAGTATTTATACTTTATTAA -AGGATTAAACAACCTAAATAGAGGTATGGTACTTGGTAGTTTAGCTGCCACAGTACGTCT -ACAAGCTGGTAATGCAACAGAAGTGCCTGCCAATTCAACTGTATTATCTTTCTGTGCTTT -TGCTGTAGATGCTGCTAAAGCTTACAAAGATTATCTAGCTAGTGGGGGACAACCAATCAC -TAATTGTGTTAAGATGTTGTGTACACACACTGGTACTGGTCAGGCAATAACAGTTACACC -GGAAGCCAATATGGATCAAGAATCCTTTGGTGGTGCATCGTGTTGTCTGTACTGCCGTTG -CCACATAGATCATCCAAATCCTAAAGGATTTTGTGACTTAAAAGGTAAGTATGTACAAAT -ACCTACAACTTGTGCTAATGACCCTGTGGGTTTTACACTTAAAAACACAGTCTGTACCGT -CTGCGGTATGTGGAAAGGTTATGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCA -GTCAGCTGATGCACAATCGTTTTTAAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACA -CCGTGCGGCACAGGCACTAGTACTGATGTCGTATACAGGGCTTTTGACATCTACAATGAT -AAAGTAGCTGGTTTTGCTAAATTCCTAAAAACTAATTGTTGTCGCTTCCAAGAAAAGGAC -GAAGATGACAATTTAATTGATTCTTACTTTGTAGTTAAGAGACACACTTTCTCTAACTAC -CAACATGAAGAAACAATTTATAATTTACTTAAGGATTGTCCAGCTGTTGCTAAACATGAC -TTCTTTAAGTTTAGAATAGACGGTGACATGGTACCACATATATCACGTCAACGTCTTACT -AAATACACAATGGCAGACCTCGTCTATGCTTTAAGGCATTTTGATGAAGGTAATTGTGAC -ACATTAAAAGAAATACTTGTCACATACAATTGTTGTGATGATGATTATTTCAATAAAAAG -GACTGGTATGATTTTGTAGAAAACCCAGATATATTACGCGTATACGCCAACTTAGGTGAA -CGTGTACGCCAAGCTTTGTTAAAAACAGTACAATTCTGTGATGCCATGCGAAATGCTGGT -ATTGTTGGTGTACTGACATTAGATAATCAAGATCTCAATGGTAACTGGTATGATTTCGGT -GATTTCATACAAACCACGCCAGGTAGTGGAGTTCCTGTTGTAGATTCTTATTATTCATTG -TTAATGCCTATATTAACCTTGACCAGGGCTTTAACTGCAGAGTCACATGTTGACACTGAC -TTAACAAAGCCTTACATTAAGTGGGATTTGTTAAAATATGACTTCACGGAAGAGAGGTTA -AAACTCTTTGACCGTTATTTTAAATATTGGGATCAGACATACCACCCAAATTGTGTTAAC -TGTTTGGATGACAGATGCATTCTGCATTGTGCAAACTTTAATGTTTTATTCTCTACAGTG -TTCCCACCTACAAGTTTTGGACCACTAGTGAGAAAAATATTTGTTGATGGTGTTCCATTT -GTAGTTTCAACTGGATACCACTTCAGAGAGCTAGGTGTTGTACATAATCAGGATGTAAAC -TTACATAGCTCTAGACTTAGTTTTAAGGAATTACTTGTGTATGCTGCTGACCCTGCTATG -CACGCTGCTTCTGGTAATCTATTACTAGATAAACGCACTACGTGCTTTTCAGTAGCTGCA -CTTACTAACAATGTTGCTTTTCAAACTGTCAAACCCGGTAATTTTAACAAAGACTTCTAT -GACTTTGCTGTGTCTAAGGGTTTCTTTAAGGAAGGAAGTTCTGTTGAATTAAAACACTTC -TTCTTTGCTCAGGATGGTAATGCTGCTATCAGCGATTATGACTACTATCGTTATAATCTA -CCAACAATGTGTGATATCAGACAACTACTATTTGTAGTTGAAGTTGTTGATAAGTACTTT -GATTGTTACGATGGTGGCTGTATTAATGCTAACCAAGTCATCGTCAACAACCTAGACAAA -TCAGCTGGTTTTCCATTTAATAAATGGGGTAAGGCTAGACTTTATTATGATTCAATGAGT -TATGAGGATCAAGATGCACTTTTCGCATATACAAAACGTAATGTCATCCCTACTATAACT -CAAATGAATCTTAAGTATGCCATTAGTGCAAAGAATAGAGCTCGCACCGTAGCTGGTGTC -TCTATCTGTAGTACTATGACCAATAGACAGTTTCATCAAAAATTATTGAAATCAATAGCC -GCCACTAGAGGAGCTACTGTAGTAATTGGAACAAGCAAATTCTATGGTGGTTGGCACAAC -ATGTTAAAAACTGTTTATAGTGATGTAGAAAACCCTCACCTTATGGGTTGGGATTATCCT -AAATGTGATAGAGCCATGCCTAACATGCTTAGAATTATGGCCTCACTTGTTCTTGCTCGC -AAACATACAACGTGTTGTAGCTTGTCACACCGTTTCTATAGATTAGCTAATGAGTGTGCT -CAAGTATTGAGTGAAATGGTCATGTGTGGCGGTTCACTATATGTTAAACCAGGTGGAACC -TCATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTTTTAACATTTGTCAAGCTGTC -ACGGCCAATGTTAATGCACTTTTATCTACTGATGGTAACAAAATTGCCGATAAGTATGTC -CGCAATTTACAACACAGACTTTATGAGTGTCTCTATAGAAATAGAGATGTTGACACAGAC -TTTGTGAATGAGTTTTACGCATATTTGCGTAAACATTTCTCAATGATGATACTCTCTGAC -GATGCTGTTGTGTGTTTCAATAGCACTTATGCATCTCAAGGTCTAGTGGCTAGCATAAAG -AACTTTAAGTCAGTTCTTTATTATCAAAACAATGTTTTTATGTCTGAAGCAAAATGTTGG -ACTGAGACTGACCTTACTAAAGGACCTCATGAATTTTGCTCTCAACATACAATGCTAGTT -AAACAGGGTGATGATTATGTGTACCTTCCTTACCCAGATCCATCAAGAATCCTAGGGGCC -GGCTGTTTTGTAGATGATATCGTAAAAACAGATGGTACACTTATGATTGAACGGTTCGTG -TCTTTAGCTATAGATGCTTACCCACTTACTAAACATCCTAATCAGGAGTATGCTGATGTC -TTTCATTTGTACTTACAATACATAAGAAAGCTACATGATGAGTTAACAGGACACATGTTA -GACATGTATTCTGTTATGCTTACTAATGATAACACTTCAAGGTATTGGGAACCTGAGTTT -TATGAGGCTATGTACACACCGCATACAGTCTTACAGGCTGTTGGGGCTTGTGTTCTTTGC -AATTCACAGACTTCATTAAGATGTGGTGCTTGCATACGTAGACCATTCTTATGTTGTAAA -TGCTGTTACGACCATGTCATATCAACATCACATAAATTAGTCTTGTCTGTTAATCCGTAT -GTTTGCAATGCTCCAGGTTGTGATGTCACAGATGTGACTCAACTTTACTTAGGAGGTATG -AGCTATTATTGTAAATCACATAAACCACCCATTAGTTTTCCATTGTGTGCTAATGGACAA -GTTTTTGGTTTATATAAAAATACATGTGTTGGTAGCGATAATGTTACTGACTTTAATGCA -ATTGCAACATGTGACTGGACAAATGCTGGTGATTACATTTTAGCTAACACCTGTACTGAA -AGACTCAAGCTTTTTGCAGCAGAAACGCTCAAAGCTACTGAGGAGACATTTAAACTGTCT -TATGGTATTGCTACTGTACGTGAAGTGCTGTCTGACAGAGAATTACATCTTTCATGGGAA -GTTGGTAAACCTAGACCACCACTTAACCGAAATTATGTCTTTACTGGTTATCGTGTAACT -AAAAACAGTAAAGTACAAATAGGAGAGTACACCTTTGAAAAAGGTGACTATGGTGATGCT -GTTGTTTACCGAGGTACAACAACTTACAAATTAAATGTTGGTGATTATTTTGTGCTGACA -TCACATACAGTAATGCCATTAAGTGCACCTACACTAGTGCCACAAGAGCACTATGTTAGA -ATTACTGGCTTATACCCAACACTCAATATCTCAGATGAGTTTTCTAGCAATGTTGCAAAT -TATCAAAAGGTTGGTATGCAAAAGTATTCTACACTCCAGGGACCACCTGGTACTGGTAAG -AGTCATTTTGCTATTGGCCTAGCTCTCTACTACCCTTCTGCTCGCATAGTGTATACAGCT -TGCTCTCATGCCGCTGTTGATGCACTATGTGAGAAGGCATTAAAATATTTGCCTATAGAT -AAATGTAGTAGAATTATACCTGCACGTGCTCGTGTAGAGTGTTTTGATAAATTCAAAGTG -AATTCAACATTAGAACAGTATGTCTTTTGTACTGTAAATGCATTGCCTGAGACGACAGCA -GATATAGTTGTCTTTGATGAAATTTCAATGGCCACAAATTATGATTTGAGTGTTGTCAAT -GCCAGATTACGTGCTAAGCACTATGTGTACATTGGCGACCCTGCTCAATTACCTGCACCA -CGCACATTGCTAACTAAGGGCACACTAGAACCAGAATATTTCAATTCAGTGTGTAGACTT -ATGAAAACTATAGGTCCAGACATGTTCCTCGGAACTTGTCGGCGTTGTCCTGCTGAAATT -GTTGACACTGTGAGTGCTTTGGTTTATGATAATAAGCTTAAAGCACATAAAGACAAATCA -GCTCAATGCTTTAAAATGTTTTATAAGGGTGTTATCACGCATGATGTTTCATCTGCAATT -AACAGGCCACAAATAGGCGTGGTAAGAGAATTCCTTACACGTAACCCTGCTTGGAGAAAA -GCTGTCTTTATTTCACCTTATAATTCACAGAATGCTGTAGCCTCAAAGATTTTGGGACTA -CCAACTCAAACTGTTGATTCATCACAGGGCTCAGAATATGACTATGTCATATTCACTCAA -ACCACTGAAACAGCTCACTCTTGTAATGTAAACAGATTTAATGTTGCTATTACCAGAGCA -AAAGTAGGCATACTTTGCATAATGTCTGATAGAGACCTTTATGACAAGTTGCAATTTACA -AGTCTTGAAATTCCACGTAGGAATGTGGCAACTTTACAAGCTGAAAATGTAACAGGACTC -TTTAAAGATTGTAGTAAGGTAATCACTGGGTTACATCCTACACAGGCACCTACACACCTC -AGTGTTGACACTAAATTCAAAACTGAAGGTTTATGTGTTGACATACCTGGCATACCTAAG -GACATGACCTATAGAAGACTCATCTCTATGATGGGTTTTAAAATGAATTATCAAGTTAAT -GGTTACCCTAACATGTTTATCACCCGCGAAGAAGCTATAAGACATGTACGTGCATGGATT -GGCTTCGATGTCGAGGGGTGTCATGCTACTAGAGAAGCTGTTGGTACCAATTTACCTTTA -CAGCTAGGTTTTTCTACAGGTGTTAACCTAGTTGCTGTACCTACAGGTTATGTTGATACA -CCTAATAATACAGATTTTTCCAGAGTTAGTGCTAAACCACCGCCTGGAGATCAATTTAAA -CACCTCATACCACTTATGTACAAAGGACTTCCTTGGAATGTAGTGCGTATAAAGATTGTA -CAAATGTTAAGTGACACACTTAAAAATCTCTCTGACAGAGTCGTATTTGTCTTATGGGCA -CATGGCTTTGAGTTGACATCTATGAAGTATTTTGTGAAAATAGGACCTGAGCGCACCTGT -TGTCTATGTGATAGACGTGCCACATGCTTTTCCACTGCTTCAGACACTTATGCCTGTTGG -CATCATTCTATTGGATTTGATTACGTCTATAATCCGTTTATGATTGATGTTCAACAATGG -GGTTTTACAGGTAACCTACAAAGCAACCATGATCTGTATTGTCAAGTCCATGGTAATGCA -CATGTAGCTAGTTGTGATGCAATCATGACTAGGTGTCTAGCTGTCCACGAGTGCTTTGTT -AAGCGTGTTGACTGGACTATTGAATATCCTATAATTGGTGATGAACTGAAGATTAATGCG -GCTTGTAGAAAGGTTCAACACATGGTTGTTAAAGCTGCATTATTAGCAGACAAATTCCCA -GTTCTTCACGACATTGGTAACCCTAAAGCTATTAAGTGTGTACCTCAAGCTGATGTAGAA -TGGAAGTTCTATGATGCACAGCCTTGTAGTGACAAAGCTTATAAAATAGAAGAATTATTC -TATTCTTATGCCACACATTCTGACAAATTCACAGATGGTGTATGCCTATTTTGGAATTGC -AATGTCGATAGATATCCTGCTAATTCCATTGTTTGTAGATTTGACACTAGAGTGCTATCT -AACCTTAACTTGCCTGGTTGTGATGGTGGCAGTTTGTATGTAAATAAACATGCATTCCAC -ACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTAC -TCTGACAGTCCATGTGAGTCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCA -CTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGTGCTGTCTGTAGACATCAT -GCTAATGAGTACAGATTGTATCTCGATGCTTATAACATGATGATCTCAGCTGGCTTTAGC -TTGTGGGTTTACAAACAATTTGATACTTATAACCTCTGGAACACTTTTACAAGACTTCAG -AGTTTAGAAAATGTGGCTTTTAATGTTGTAAATAAGGGACACTTTGATGGACAACAGGGT -GAAGTACCAGTTTCTATCATTAATAACACTGTTTACACAAAAGTTGATGGTGTTGATGTA -GAATTGTTTGAAAATAAAACAACATTACCTGTTAATGTAGCATTTGAGCTTTGGGCTAAG -CGCAACATTAAACCAGTACCAGAGGTGAAAATACTCAATAATTTGGGTGTGGACATTGCT -GCTAATACTGTGATCTGGGACTACAAAAGAGATGCTCCAGCACATATATCTACTATTGGT -GTTTGTTCTATGACTGACATAGCCAAGAAACCAACTGAAACGATTTGTGCACCACTCACT -GTCTTTTTTGATGGTAGAGTTGATGGTCAAGTAGACTTATTTAGAAATGCCCGTAATGGT -GTTCTTATTACAGAAGGTAGTGTTAAAGGTTTACAACCATCTGTAGGTCCCAAACAAGCT -AGTCTTAATGGAGTCACATTAATTGGAGAAGCCGTAAAAACACAGTTCAATTATTATAAG -AAAGTTGATGGTGTTGTCCAACAATTACCTGAAACTTACTTTACTCAGAGTAGAAATTTA -CAAGAATTTAAACCCAGGAGTCAAATGGAAATTGATTTCTTAGAATTAGCTATGGATGAA -TTCATTGAACGGTATAAATTAGAAGGCTATGCCTTCGAACATATCGTTTATGGAGATTTT -AGTCATAGTCAGTTAGGTGGTTTACATCTACTGATTGGACTAGCTAAACGTTTTAAGGAA -TCACCTTTTGAATTAGAAGATTTTATTCCTATGGACAGTACAGTTAAAAACTATTTCATA -ACAGATGCGCAAACAGGTTCATCTAAGTGTGTGTGTTCTGTTATTGATTTATTACTTGAT -GATTTTGTTGAAATAATAAAATCCCAAGATTTATCTGTAGTTTCTAAGGTTGTCAAAGTG -ACTATTGACTATACAGAAATTTCATTTATGCTTTGGTGTAAAGATGGCCATGTAGAAACA -TTTTACCCAAAATTACAATCTAGTCAAGCGTGGCAACCGGGTGTTGCTATGCCTAATCTT -TACAAAATGCAAAGAATGCTATTAGAAAAGTGTGACCTTCAAAATTATGGTGATAGTGCA -ACATTACCTAAAGGCATAATGATGAATGTCGCAAAATATACTCAACTGTGTCAATATTTA -AACACATTAACATTAGCTGTACCCTATAATATGAGAGTTATACATTTTGGTGCTGGTTCT -GATAAAGGAGTTGCACCAGGTACAGCTGTTTTAAGACAGTGGTTGCCTACGGGTACGCTG -CTTGTCGATTCAGATCTTAATGACTTTGTCTCTGATGCAGATTCAACTTTGATTGGTGAT -TGTGCAACTGTACATACAGCTAATAAATGGGATCTCATTATTAGTGATATGTACGACCCT -AAGACTAAAAATGTTACAAAAGAAAATGACTCTAAAGAGGGTTTTTTCACTTACATTTGT -GGGTTTATACAACAAAAGCTAGCTCTTGGAGGTTCCGTGGCTATAAAGATAACAGAACAT -TCTTGGAATGCTGATCTTTATAAGCTCATGGGACACTTCGCATGGTGGACAGCCTTTGTT -ACTAATGTGAATGCGTCATCATCTGAAGCATTTTTAATTGGATGTAATTATCTTGGCAAA -CCACGCGAACAAATAGATGGTTATGTCATGCATGCAAATTACATATTTTGGAGGAATACA -AATCCAATTCAGTTGTCTTCCTATTCTTTATTTGACATGAGTAAATTTCCCCTTAAATTA -AGGGGTACTGCTGTTATGTCTTTAAAAGAAGGTCAAATCAATGATATGATTTTATCTCTT -CTTAGTAAAGGTAGACTTATAATTAGAGAAAACAACAGAGTTGTTATTTCTAGTGATGTT -CTTGTTAACAACTAAACGAACAATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAG -TCAGTGTGTTAATCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCAC -ACGTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGA -CTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCATGCTATACATGTCTCTGGGAC -CAATGGTACTAAGAGGTTTGATAACCCTGTCCTACCATTTAATGATGGTGTTTATTTTGC -TTCCACTGAGAAGTCTAACATAATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAA -GACCCAGTCCCTACTTATTGTTAATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATT -TCAATTTTGTAATGATCCATTTTTGGGTGTTTATTACCACAAAAACAACAAAAGTTGGAT -GGAAAGTGAGTTCAGAGTTTATTCTAGTGCGAATAATTGCACTTTTGAATATGTCTCTCA -GCCTTTTCTTATGGACCTTGAAGGAAAACAGGGTAATTTCAAAAATCTTAGGGAATTTGT -GTTTAAGAATATTGATGGTTATTTTAAAATATATTCTAAGCACACGCCTATTAATTTAGT -GCGTGATCTCCCTCAGGGTTTTTCGGCTTTAGAACCATTGGTAGATTTGCCAATAGGTAT -TAACATCACTAGGTTTCAAACTTTACTTGCTTTACATAGAAGTTATTTGACTCCTGGTGA -TTCTTCTTCAGGTTGGACAGCTGGTGCTGCAGCTTATTATGTGGGTTATCTTCAACCTAG -GACTTTTCTATTAAAATATAATGAAAATGGAACCATTACAGATGCTGTAGACTGTGCACT -TGACCCTCTCTCAGAAACAAAGTGTACGTTGAAATCCTTCACTGTAGAAAAAGGAATCTA -TCAAACTTCTAACTTTAGAGTCCAACCAACAGAATCTATTGTTAGATTTCCTAATATTAC -AAACTTGTGCCCTTTTGGTGAAGTTTTTAACGCCACCAGATTTGCATCTGTTTATGCTTG -GAACAGGAAGAGAATCAGCAACTGTGTTGCTGATTATTCTGTCCTATATAATTCCGCATC -ATTTTCCACTTTTAAGTGTTATGGAGTGTCTCCTACTAAATTAAATGATCTCTGCTTTAC -TAATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGG -GCAAACTGGAAAGATTGCTGATTATAATTATAAATTACCAGATGATTTTACAGGCTGCGT -TATAGCTTGGAATTCTAACAATCTTGATTCTAAGGTTGGTGGTAATTATAATTACCTGTA -TAGATTGTTTAGGAAGTCTAATCTCAAACCTTTTGAGAGAGATATTTCAACTGAAATCTA -TCAGGCCGGTAGCACACCTTGTAATGGTGTTGAAGGTTTTAATTGTTACTTTCCTTTACA -ATCATATGGTTTCCAACCCACTAATGGTGTTGGTTACCAACCATACAGAGTAGTAGTACT -TTCTTTTGAACTTCTACATGCACCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTT -GGTTAAAAACAAATGTGTCAATTTCAACTTCAATGGTTTAACAGGCACAGGTGTTCTTAC -TGAGTCTAACAAAAAGTTTCTGCCTTTCCAACAATTTGGCAGAGACATTGCTGACACTAC -TGATGCTGTCCGTGATCCACAGACACTTGAGATTCTTGACATTACACCATGTTCTTTTGG -TGGTGTCAGTGTTATAACACCAGGAACAAATACTTCTAACCAGGTTGCTGTTCTTTATCA -GGATGTTAACTGCACAGAAGTCCCTGTTGCTATTCATGCAGATCAACTTACTCCTACTTG -GCGTGTTTATTCTACAGGTTCTAATGTTTTTCAAACACGTGCAGGCTGTTTAATAGGGGC -TGAACATGTCAACAACTCATATGAGTGTGACATACCCATTGGTGCAGGTATATGCGCTAG -TTATCAGACTCAGACTAATTCTCCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATCAT -TGCCTACACTATGTCACTTGGTGCAGAAAATTCAGTTGCTTACTCTAATAACTCTATTGC -CATACCCACAAATTTTACTATTAGTGTTACCACAGAAATTCTACCAGTGTCTATGACCAA -GACATCAGTAGATTGTACAATGTACATTTGTGGTGATTCAACTGAATGCAGCAATCTTTT -GTTGCAATATGGCAGTTTTTGTACACAATTAAACCGTGCTTTAACTGGAATAGCTGTTGA -ACAAGACAAAAACACCCAAGAAGTTTTTGCACAAGTCAAACAAATTTACAAAACACCACC -AATTAAAGATTTTGGTGGTTTTAATTTTTCACAAATATTACCAGATCCATCAAAACCAAG -CAAGAGGTCATTTATTGAAGATCTACTTTTCAACAAAGTGACACTTGCAGATGCTGGCTT -CATCAAACAATATGGTGATTGCCTTGGTGATATTGCTGCTAGAGACCTCATTTGTGCACA -AAAGTTTAACGGCCTTACTGTTTTGCCACCTTTGCTCACAGATGAAATGATTGCTCAATA -CACTTCTGCACTGTTAGCGGGTACAATCACTTCTGGTTGGACCTTTGGTGCAGGTGCTGC -ATTACAAATACCATTTGCTATGCAAATGGCTTATAGGTTTAATGGTATTGGAGTTACACA -GAATGTTCTCTATGAGAACCAAAAATTGATTGCCAACCAATTTAATAGTGCTATTGGCAA -AATTCAAGACTCACTTTCTTCCACAGCAAGTGCACTTGGAAAACTTCAAGATGTGGTCAA -CCAAAATGCACAAGCTTTAAACACGCTTGTTAAACAACTTAGCTCCAATTTTGGTGCAAT -TTCAAGTGTTTTAAATGATATCCTTTCACGTCTTGACAAAGTTGAGGCTGAAGTGCAAAT -TGATAGGTTGATCACAGGCAGACTTCAAAGTTTGCAGACATATGTGACTCAACAATTAAT -TAGAGCTGCAGAAATCAGAGCTTCTGCTAATCTTGCTGCTACTAAAATGTCAGAGTGTGT -ACTTGGACAATCAAAAAGAGTTGATTTTTGTGGAAAGGGCTATCATCTTATGTCCTTCCC -TCAGTCAGCACCTCATGGTGTAGTCTTCTTGCATGTGACTTATGTCCCTGCACAAGAAAA -GAACTTCACAACTGCTCCTGCCATTTGTCATGATGGAAAAGCACACTTTCCTCGTGAAGG -TGTCTTTGTTTCAAATGGCACACACTGGTTTGTAACACAAAGGAATTTTTATGAACCACA -AATCATTACTACAGACAACACATTTGTGTCTGGTAACTGTGATGTTGTAATAGGAATTGT -CAACAACACAGTTTATGATCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGA -TAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGGTGACATCTCTGGCATTAA -TGCTTCAGTTGTAAACATTCAAAAAGAAATTGACCGCCTCAATGAGGTTGCCAAGAATTT -AAATGAATCTCTCATCGATCTCCAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCC -ATGGTACATTTGGCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTAT -GCTTTGCTGTATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTG -CTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACAC -ATAAACGAACTTATGGATTTGTTTATGAGAATCTTCACAATTGGAACTGTAACTTTGAAG -CAAGGTGAAATCAAGGATGCTACTCCTTCAGATTTTGTTCGCGCTACTGCAACGATACCG -ATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCACTTCTTGCTGTTTTT -CAGAGCGCTTCCAAAATCATAACCCTCAAAAAGAGATGGCAACTAGCACTCTCCAAGGGT -GTTCACTTTGTTTGCAACTTGCTGTTGTTGTTTGTAACAGTTTACTCACACCTTTTGCTC -GTTGCTGCTGGCCTTGAAGCCCCTTTTCTCTATCTTTATGCTTTAGTCTACTTCTTGCAG -AGTATAAACTTTGTAAGAATAATAATGAGGCTTTGGCTTTGCTGGAAATGCCGTTCCAAA -AACCCATTACTTTATGATGCCAACTATTTTCTTTGCTGGCATACTAATTGTTACGACTAT -TGTATACCTTACAATAGTGTAACTTCTTCAATTGTCATTACTTCAGGTGATGGCACAACA -AGTCCTATTTCTGAACATGACTACCAGATTGGTGGTTATACTGAAAAATGGGAATCTGGA -GTAAAAGACTGTGTTGTATTACACAGTTACTTCACTTCAGACTATTACCAGCTGTACTCA -ACTCAATTGAGTACAGACACTGGTGTTGAACATGTTACCTTCTTCATCTACAATAAAATT -GTTGATGAGCCTGAAGAACATGTCCAAATTCACACAATCGACGGTTCATCCGGAGTTGTT -AATCCAGTAATGGAACCAATTTATGATGAACCGACGACGACTACTAGCGTGCCTTTGTAA -GCACAAGCTGATGAGTACGAACTTATGTACTCATTCGTTTCGGAAGAGACAGGTACGTTA -ATAGTTAATAGCGTACTTCTTTTTCTTGCTTTCGTGGTATTCTTGCTAGTTACACTAGCC -ATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTTGTA -AAACCTTCTTTTTACGTTTACTCTCGTGTTAAAAATCTGAATTCTTCTAGAGTTCCTGAT -CTTCTGGTCTAAACGAACTAAATATTATATTAGTTTTTCTGTTTGGAACTTTAATTTTAG -CCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTCCTTGAACAAT -GGAACCTAGTAATAGGTTTCCTATTCCTTACATGGATTTGTCTTCTACAATTTGCCTATG -CCAACAGGAATAGGTTTTTGTATATAATTAAGTTAATTTTCCTCTGGCTGTTATGGCCAG -TAACTTTAGCTTGTTTTGTGCTTGCTGCTGTTTACAGAATAAATTGGATCACCGGTGGAA -TTGCTATCGCAATGGCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTT -TCAGACTGTTTGCGCGTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAACATTCTTC -TCAACGTGCCACTCCATGGCACTATTCTGACCAGACCGCTTCTAGAAAGTGAACTCGTAA -TCGGAGCTGTGATCCTTCGTGGACATCTTCGTATTGCTGGACACCATCTAGGACGCTGTG -ACATCAAGGACCTGCCTAAAGAAATCACTGTTGCTACATCACGAACGCTTTCTTATTACA -AATTGGGAGCTTCGCAGCGTGTAGCAGGTGACTCAGGTTTTGCTGCATACAGTCGCTACA -GGATTGGCAACTATAAATTAAACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGC -TTGTACAGTAAGTGACAACAGATGTTTCATCTCGTTGACTTTCAGGTTACTATAGCAGAG -ATATTACTAATTATTATGAGGACTTTTAAAGTTTCCATTTGGAATCTTGATTACATCATA -AACCTCATAATTAAAAATTTATCTAAGTCACTAACTGAGAATAAATATTCTCAATTAGAT -GAAGAGCAACCAATGGAGATTGATTAAACGAACATGAAAATTATTCTTTTCTTGGCACTG -ATAACACTCGCTACTTGTGAGCTTTATCACTACCAAGAGTGTGTTAGAGGTACAACAGTA -CTTTTAAAAGAACCTTGCTCTTCTGGAACATACGAGGGCAATTCACCATTTCATCCTCTA -GCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGAC -GGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGA -CAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTT -ATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGATTGAACTTTCATTAATTGACT -TCTATTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTATCTTTT -GGTTCTCACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAAT -TTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTAC -AGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATT -CTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGG -ATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCT -GTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTT -CGTTCTATGAAGACTTTTTAGAGTATCATGACGTTCGTGTTGTTTTAGATTTCATCTAAA -CGAACAAACTAAAATGTCTGATAATGGACCCCAAAATCAGCGAAATGCACCCCGCATTAC -GTTTGGTGGACCCTCAGATTCAACTGGCAGTAACCAGAATGGAGAACGCAGTGGGGCGCG -ATCAAAACAACGTCGGCCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCT -CACTCAACATGGCAAGGAAGACCTTAAATTCCCTCGAGGACAAGGCGTTCCAATTAACAC -CAATAGCAGTCCAGATGACCAAATTGGCTACTACCGAAGAGCTACCAGACGAATTCGTGG -TGGTGACGGTAAAATGAAAGATCTCAGTCCAAGATGGTATTTCTACTACCTAGGAACTGG -GCCAGAAGCTGGACTTCCCTATGGTGCTAACAAAGACGGCATCATATGGGTTGCAACTGA -GGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGCAATCCTGCTAACAATGCTGC -AATCGTGCTACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAAGGGAG -CAGAGGCGGCAGTCAAGCCTCTTCTCGTTCCTCATCACGTAGTCGCAACAGTTCAAGAAA -TTCAACTCCAGGCAGCAGTAGGGGAACTTCTCCTGCTAGAATGGCTGGCAATGGCGGTGA -TGCTGCTCTTGCTTTGCTGCTGCTTGACAGATTGAACCAGCTTGAGAGCAAAATGTCTGG -TAAAGGCCAACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCTTCTAA -GAAGCCTCGGCAAAAACGTACTGCCACTAAAGCATACAATGTAACACAAGCTTTCGGCAG -ACGTGGTCCAGAACAAACCCAAGGAAATTTTGGGGACCAGGAACTAATCAGACAAGGAAC -TGATTACAAACATTGGCCGCAAATTGCACAATTTGCCCCCAGCGCTTCAGCGTTCTTCGG -AATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGC -CATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCA -TATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGC -TGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCC -TGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTC -AACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGC -TTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGC -ACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTA -GGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGT -ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAAT -TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAA -AAAAAAAAAAAAAAAAAAAAAAA diff --git a/sars-cov-2/varskip/vss2a/scheme.bed b/sars-cov-2/varskip/vss2a/scheme.bed deleted file mode 100644 index 10ba175..0000000 --- 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varskip-0317-1_67_RIGHT 0 - -MN908947.3 27485 27511 varskip-0317-1_69_LEFT 0 + -MN908947.3 27647 27671 varskip-0317-1_68_RIGHT 1 - -MN908947.3 27835 27859 varskip-0317-1_70_LEFT 1 + -MN908947.3 28051 28076 varskip-0317-1_69_RIGHT 0 - -MN908947.3 28219 28243 varskip-0317-1_71_LEFT 0 + -MN908947.3 28380 28400 varskip-0317-1_70_RIGHT 1 - -MN908947.3 28627 28649 varskip-0317-1_72_LEFT 1 + -MN908947.3 28783 28805 varskip-0317-1_71_RIGHT 0 - -MN908947.3 29062 29088 varskip-0317-1_73_LEFT 0 + -MN908947.3 29203 29225 varskip-0317-1_72_RIGHT 1 - -MN908947.3 29270 29292 varskip-0317-1_74_LEFT 1 + -MN908947.3 29617 29644 varskip-0317-1_73_RIGHT 0 - -MN908947.3 29799 29831 varskip-0317-1_74_RIGHT 1 - diff --git a/sars-cov-2/varskip/vss2b/info.yml b/sars-cov-2/varskip/vss2b/info.yml deleted file mode 100644 index 62b2658..0000000 --- a/sars-cov-2/varskip/vss2b/info.yml +++ /dev/null @@ -1,22 +0,0 @@ -schema_version: 0.9.0 -name: varskip-vss2b -display_name: VarSkip VSS2B -organism: sars-cov-2 -developers: -- organisation_name: New England BioLabs - home_page: https://neb.com -- organisation_name: ARTIC network - home_page: https://artic.network -vendors: -- organisation_name: New England BioLabs - home_page: https://neb.com -amplicon_size: 400 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/varskip/vss2a -citations: -- https://doi.org/10.1101%2F2020.09.04.283077 -notes: -- Adapted from bed + tsv at https://github.com/nebiolabs/VarSkip with help from Brad - Langhorst -derived_from: varskip-vss2a -primer_checksum: primaschema:e4242c52aff32c59 -reference_checksum: primaschema:7d5621cd3b3e498d diff --git a/sars-cov-2/varskip/vss2b/primer.bed b/sars-cov-2/varskip/vss2b/primer.bed deleted file mode 100644 index 0621c00..0000000 --- a/sars-cov-2/varskip/vss2b/primer.bed +++ /dev/null @@ -1,150 +0,0 @@ -MN908947.3 22 46 varskip-0317-1_01_LEFT 0 + GGTAACAAACCAACCAACTTTCGA -MN908947.3 418 443 varskip-0317-1_02_LEFT 1 + GGCTTAGTAGAAGTTGAAAAAGGCG -MN908947.3 559 581 varskip-0317-1_01_RIGHT 0 - CACCAAGTGTCTCACCACTACG -MN908947.3 841 863 varskip-0317-1_03_LEFT 0 + CCTGATGGCTACCCTCTTGAGT -MN908947.3 976 998 varskip-0317-1_02_RIGHT 1 - AACGTTCCGTGTACCAAGCAAT -MN908947.3 1277 1299 varskip-0317-1_04_LEFT 1 + AAGCCACTTGCGAATTTTGTGG -MN908947.3 1402 1424 varskip-0317-1_03_RIGHT 0 - ATTCGGCAAGACTATGCTCAGG -MN908947.3 1695 1717 varskip-0317-1_05_LEFT 0 + GGCATCTTTTTCTGCTTCCACA -MN908947.3 1821 1844 varskip-0317-1_04_RIGHT 1 - TCTGTTCACCAATATTCCAGGCA -MN908947.3 2061 2086 varskip-0317-1_06_LEFT 1 + CTACATTACAGGTGGTGTTGTTCAG -MN908947.3 2228 2250 varskip-0317-1_05_RIGHT 0 - CCACCGACAATTTCACAAGCAC -MN908947.3 2483 2508 varskip-0317-1_07_LEFT 0 + TCTTCTTAGAGGGAGAAACACTTCC -MN908947.3 2621 2643 varskip-0317-1_06_RIGHT 1 - ATTTCGAGCAACATAAGCCCGT -MN908947.3 2923 2947 varskip-0317-1_08_LEFT 1 + TCTGAATTACTTACACCACTGGGC -MN908947.3 3043 3067 varskip-0317-1_07_RIGHT 0 - ACCTTCTTCTTCATCCTCATCTGG -MN908947.3 3326 3355 varskip-0317-1_09_LEFT 0 + AGACTATTGAAGTGAATAGTTTTAGTGGT -MN908947.3 3470 3492 varskip-0317-1_08_RIGHT 1 - TTTAAGGCTCCTGCAACACCTC -MN908947.3 3753 3778 varskip-0317-1_10_LEFT 1 + AGTTTGTGTAGATACTGTTCGCACA -MN908947.3 3887 3915 varskip-0317-1_09_RIGHT 0 - TCAGTTATAAATGGCTTAACTTCCTCTT -MN908947.3 4154 4180 varskip-0317-1_11_LEFT 0 + CTGCTGTGGTTATACCTACTAAAAAG -MN908947.3 4296 4322 varskip-0317-1_10_RIGHT 1 - AGGCACTTTTACACTTTTTAAGCACT -MN908947.3 4594 4617 varskip-0317-1_12_LEFT 1 + ACTCTTGTTACAATGCCACTTGG -MN908947.3 4714 4743 varskip-0317-1_11_RIGHT 0 - GAAGAAGTAAGATAACCATTATACGCTGT -MN908947.3 5006 5028 varskip-0317-1_13_LEFT 0 + CGCAAGTTGTGGACATGTCAAT -MN908947.3 5145 5168 varskip-0317-1_12_RIGHT 1 - AGTACTCAAAAGCCTCAACACGT -MN908947.3 5340 5366 varskip-0317-1_14_LEFT 1 + ACCTGCTCTACAAGATGCTTATTACA -MN908947.3 5555 5580 varskip-0317-1_13_RIGHT 0 - CCCATGTACATAACAGCTTCTACAC -MN908947.3 5794 5817 varskip-0317-1_15_LEFT 0 + ACTTTGTATTGCATAGACGGTGC -MN908947.3 5987 6011 varskip-0317-1_14_RIGHT 1 - GTACAAGATCAATTGGTTGCTCTG -MN908947.3 6217 6245 varskip-0317-1_16_LEFT 1 + TTGTTACATAAACCTATTGTTTGGCATG -MN908947.3 6341 6363 varskip-0317-1_15_RIGHT 0 - GCGTCCTCTGACTTCAGTACAT -MN908947.3 6561 6594 varskip-0317-1_17_LEFT 0 + TGTAGACAATTCTAGTCTTACTATTAAGAAACC -MN908947.3 6749 6776 varskip-0317-1_16_RIGHT 1 - AAGGCATATAATTAGTACAAACACGGT -MN908947.3 7000 7022 varskip-0317-1_18_LEFT 1 + TCAACCGCTGCTTTAGGTGTTT -MN908947.3 7124 7151 varskip-0317-1_17_RIGHT 0 - CTAAACCACTAAGACAAACACTACAAG -MN908947.3 7403 7429 varskip-0317-1_19_LEFT 0 + TGGTTAGAATGTACATCTTCTTTGCA -MN908947.3 7547 7574 varskip-0317-1_18_RIGHT 1 - AGACATAAAAGGACCTTCTAACACCAT -MN908947.3 7851 7883 varskip-0317-1_20_LEFT 1 + TAATAACACTAAAGGTTCATTGCCTATTAATG -MN908947.3 7984 8007 varskip-0317-1_19_RIGHT 0 - CCAACATCAGACACTAATGCCTG -MN908947.3 8245 8269 varskip-0317-1_21_LEFT 0 + TCTGACATAGAAGTTACTGGCGAT -MN908947.3 8348 8370 varskip-0317-1_20_RIGHT 1 - TGCGCATTAATATGACGCGCAC -MN908947.3 8685 8709 varskip-0317-1_22_LEFT 1 + AGGATACAAGGCTATTGATGGTGG -MN908947.3 8818 8843 varskip-0317-1_21_RIGHT 0 - TTGTTATGACTGCAGCAATCAATGG -MN908947.3 9099 9121 varskip-0317-1_23_LEFT 0 + TGAAAGTTTACGCCCTGACACA -MN908947.3 9221 9243 varskip-0317-1_22_RIGHT 1 - TCTGATCTTTCACAAGTGCCGT -MN908947.3 9478 9502 varskip-0317-1_24_LEFT 1 + GGTGAATACAGTCATGTAGTTGCC -MN908947.3 9644 9667 varskip-0317-1_23_RIGHT 0 - AGGTGTGAACATAACCATCCACT -MN908947.3 9842 9865 varskip-0317-1_25_LEFT 0 + TGCGTAGTGATGTGCTATTACCT -MN908947.3 10039 10061 varskip-0317-1_24_RIGHT 1 - AACCACTCTGCAAAACAGCTGA -MN908947.3 10269 10293 varskip-0317-1_26_LEFT 1 + TGTTCAACTCAGGGTTATTGGACA -MN908947.3 10396 10422 varskip-0317-1_25_RIGHT 0 - GATGGTGAACCATTGTAACAAGCTAA -MN908947.3 10696 10719 varskip-0317-1_27_LEFT 0 + GGAGACAGGTGGTTTCTCAATCG -MN908947.3 10816 10838 varskip-0317-1_26_RIGHT 1 - AAACGGCAATTCCAGTTTGAGC -MN908947.3 11092 11116 varskip-0317-1_28_LEFT 1 + GCCTTTTTACCTTTTGCTATGGGT -MN908947.3 11243 11268 varskip-0317-1_27_RIGHT 0 - TCCAACCATGTCATAATACGCATCA -MN908947.3 11371 11393 varskip-0317-1_29_LEFT 0 + GATGGTGCTAGGAGAGTGTGGA -MN908947.3 11647 11670 varskip-0317-1_28_RIGHT 1 - CGGTTGAGTAAACAAAAGAGGCC -MN908947.3 11824 11851 varskip-0317-1_30_LEFT 1 + AAAGTAGCCACTGTACAGTCTAAAATG -MN908947.3 11921 11943 varskip-0317-1_29_RIGHT 0 - TGGACACATTGAGCCCACAATT -MN908947.3 12201 12226 varskip-0317-1_31_LEFT 0 + GTTGAAGAAGTCTTTGAATGTGGCT -MN908947.3 12329 12353 varskip-0317-1_30_RIGHT 1 - GCATAGCACTAGTAACTTTTGCCC -MN908947.3 12632 12656 varskip-0317-1_32_LEFT 1 + CATGGCCTCTTATTGTAACAGCTT -MN908947.3 12752 12774 varskip-0317-1_31_RIGHT 0 - GCTAACGCATTGTCATCAGTGC -MN908947.3 13034 13058 varskip-0317-1_33_LEFT 0 + CAACAGAAGTGCCTGCCAATTCAA -MN908947.3 13166 13188 varskip-0317-1_32_RIGHT 1 - ATTGCCTGACCAGTACCAGTGT -MN908947.3 13479 13501 varskip-0317-1_34_LEFT 1 + GTAAGTGCAGCCCGTCTTACAC -MN908947.3 13599 13621 varskip-0317-1_33_RIGHT 0 - CGTCCTTTTCTTGGAAGCGACA -MN908947.3 13874 13901 varskip-0317-1_35_LEFT 0 + ACTTGTCACATACAATTGTTGTGATGA -MN908947.3 14009 14031 varskip-0317-1_34_RIGHT 1 - TCGCATGGCATCACAGAATTGT -MN908947.3 14290 14319 varskip-0317-1_36_LEFT 1 + ACCGTTATTTTAAATATTGGGATCAGACA -MN908947.3 14417 14444 varskip-0317-1_35_RIGHT 0 - ACAAATATTTTTCTCACTAGTGGTCCA -MN908947.3 14651 14675 varskip-0317-1_37_LEFT 0 + TGTTGCTTTTCAAACTGTCAAACC -MN908947.3 14826 14855 varskip-0317-1_36_RIGHT 1 - ACAAATAGTAGTTGTCTGATATCACACAT -MN908947.3 15064 15091 varskip-0317-1_38_LEFT 1 + TGAATCTTAAGTATGCCATTAGTGCAA -MN908947.3 15191 15217 varskip-0317-1_37_RIGHT 0 - TGCTTGTTCCAATTACTACAGTAGCT -MN908947.3 15428 15450 varskip-0317-1_39_LEFT 0 + GAGTGAAATGGTCATGTGTGGC -MN908947.3 15598 15622 varskip-0317-1_38_RIGHT 1 - AAAGTCTGTGTTGTAAATTGCGGA -MN908947.3 15862 15887 varskip-0317-1_40_LEFT 1 + GACCTCATGAATTTTGCTCTCAACA -MN908947.3 16007 16029 varskip-0317-1_39_RIGHT 0 - AGCTAAAGACACGAACCGTTCA -MN908947.3 16277 16299 varskip-0317-1_41_LEFT 0 + AAGATGTGGTGCTTGCATACGT -MN908947.3 16416 16443 varskip-0317-1_40_RIGHT 1 - GCTCATACCTCCTAAGTAAAGTTGAGT -MN908947.3 16689 16711 varskip-0317-1_42_LEFT 1 + GCTACTGTACGTGAAGTGCTGT -MN908947.3 16842 16865 varskip-0317-1_41_RIGHT 0 - ACAACAGCATCACCATAGTCACC -MN908947.3 17057 17082 varskip-0317-1_43_LEFT 0 + GCAAAAGTATTCTACACTCCAGGGA -MN908947.3 17244 17266 varskip-0317-1_42_RIGHT 1 - CAAAACAATCTACACGAGCACG -MN908947.3 17476 17500 varskip-0317-1_44_LEFT 1 + AGGGCACACTAGAACCAGAATATT -MN908947.3 17621 17646 varskip-0317-1_43_RIGHT 0 - TTGAGCTGATTTGTCTTTATGTGCT -MN908947.3 17889 17915 varskip-0317-1_45_LEFT 0 + ACAGCTCACTCTTGTAATGTAAACAG -MN908947.3 18033 18059 varskip-0317-1_44_RIGHT 1 - AGTCCTGTTACATTTTCAGCTTGTAA -MN908947.3 18311 18333 varskip-0317-1_46_LEFT 1 + CGAGGGGTGTCATGCTACTAGA -MN908947.3 18441 18463 varskip-0317-1_45_RIGHT 0 - GCGGTGGTTTAGCACTAACTCT -MN908947.3 18712 18737 varskip-0317-1_47_LEFT 0 + CCTGTTGGCATCATTCTATTGGATT -MN908947.3 18852 18876 varskip-0317-1_46_RIGHT 1 - ACACCTAGTCATGATTGCATCACA -MN908947.3 19098 19125 varskip-0317-1_48_LEFT 1 + CAGCCTTGTAGTGACAAAGCTTATAAA -MN908947.3 19247 19273 varskip-0317-1_47_RIGHT 0 - GCAAGTTAAGGTTAGATAGCACTCTA -MN908947.3 19488 19515 varskip-0317-1_49_LEFT 0 + TGTAGACATCATGCTAATGAGTACAGA -MN908947.3 19623 19655 varskip-0317-1_48_RIGHT 1 - TTATTTACAACATTAAAAGCCACATTTTCTAA -MN908947.3 19885 19911 varskip-0317-1_50_LEFT 1 + AAAGAGATGCTCCAGCACATATATCT -MN908947.3 20010 20038 varskip-0317-1_49_RIGHT_ALT1 0 - CATTACGGGCATTTCTAAATAAGTCTAC -MN908947.3 20037 20064 varskip-0317-1_49_RIGHT 0 - AACACTACCTTCTGTAATAAGAACACC -MN908947.3 20340 20366 varskip-0317-1_51_LEFT 0 + AGTCATAGTCAGTTAGGTGGTTTACA -MN908947.3 20462 20484 varskip-0317-1_50_RIGHT 1 - AGATGAACCTGTTTGCGCATCT -MN908947.3 20766 20792 varskip-0317-1_52_LEFT 1 + CCTAAAGGCATAATGATGAATGTCGC -MN908947.3 20890 20912 varskip-0317-1_51_RIGHT 0 - AAAACAGCTGTACCTGGTGCAA -MN908947.3 21194 21219 varskip-0317-1_53_LEFT 0 + TCTTTATAAGCTCATGGGACACTTC -MN908947.3 21314 21338 varskip-0317-1_52_RIGHT 1 - TTTGCATGCATGACATAACCATCT -MN908947.3 21537 21566 varskip-0317-1_54_LEFT 1 + GTTCTTGTTAACAACTAAACGAACAATGT -MN908947.3 21724 21753 varskip-0317-1_53_RIGHT 0 - CAAGTAACATTGGAAAAGAAAGGTAAGAA -MN908947.3 21926 21955 varskip-0317-1_55_LEFT 0 + ACGCTACTAATGTTGTTATTAAAGTCTGT -MN908947.3 22091 22113 varskip-0317-1_54_RIGHT 1 - CCCTGTTTTCCTTCAAGGTCCA -MN908947.3 22347 22373 varskip-0317-1_56_LEFT 1 + TGCAGCTTATTATGTGGGTTATCTTC -MN908947.3 22480 22510 varskip-0317-1_55_RIGHT 0 - AGAAGTTTGATAGATTCCTTTTTCTACAGT -MN908947.3 22742 22773 varskip-0317-1_57_LEFT_ALT2 0 + ATGTCTATGCAGATTCATTTGTAATTAGAGG -MN908947.3 22749 22776 varskip-0317-1_57_LEFT 0 + TGCAGATTCATTTGTAATTAGAGGTGA -MN908947.3 22853 22877 varskip-0317-1_56_RIGHT 1 - TAGAATTCCAAGCTATAACGCAGC -MN908947.3 23122 23144 varskip-0317-1_58_LEFT 1 + CCAGCAACTGTTTGTGGACCTA -MN908947.3 23288 23310 varskip-0317-1_57_RIGHT 0 - TCAAGTGTCTGTGGATCACGGA -MN908947.3 23545 23567 varskip-0317-1_59_LEFT 0 + TGTGACATACCCATTGGTGCAG -MN908947.3 23681 23708 varskip-0317-1_58_RIGHT 1 - TGGGTATGGCAATAGAGTTATTAGAGT -MN908947.3 23979 24002 varskip-0317-1_60_LEFT 1 + ACCAGATCCATCAAAACCAAGCA -MN908947.3 24103 24129 varskip-0317-1_59_RIGHT 0 - TTAAACTTTTGTGCACAAATGAGGTC -MN908947.3 24375 24397 varskip-0317-1_61_LEFT 0 + TTCTTCCACAGCAAGTGCACTT -MN908947.3 24518 24541 varskip-0317-1_60_RIGHT 1 - AATTTGCACTTCAGCCTCAACTT -MN908947.3 24789 24811 varskip-0317-1_62_LEFT 1 + AACTGCTCCTGCCATTTGTCAT -MN908947.3 24924 24948 varskip-0317-1_61_RIGHT 0 - ACAACATCACAGTTACCAGACACA -MN908947.3 25171 25200 varskip-0317-1_63_LEFT 0 + GGAAAGTATGAGCAGTATATAAAATGGCC -MN908947.3 25331 25353 varskip-0317-1_62_RIGHT 1 - ACTGGCTCAGAGTCGTCTTCAT -MN908947.3 25526 25548 varskip-0317-1_64_LEFT 1 + GCTTATTGTTGGCGTTGCACTT -MN908947.3 25725 25754 varskip-0317-1_63_RIGHT 0 - ACAAAGTTTATACTCTGCAAGAAGTAGAC -MN908947.3 25970 25995 varskip-0317-1_65_LEFT 0 + GGAATCTGGAGTAAAAGACTGTGTT -MN908947.3 26120 26143 varskip-0317-1_64_RIGHT 1 - CGTCGATTGTGTGAATTTGGACA -MN908947.3 26359 26381 varskip-0317-1_66_LEFT 1 + TGTGTGCGTACTGCTGCAATAT -MN908947.3 26497 26525 varskip-0317-1_65_RIGHT 0 - CATGGCTAAAATTAAAGTTCCAAACAGA -MN908947.3 26682 26705 varskip-0317-1_67_LEFT 0 + TCTGGCTGTTATGGCCAGTAACT -MN908947.3 26905 26927 varskip-0317-1_66_RIGHT 1 - TTCTAGAAGCGGTCTGGTCAGA -MN908947.3 27081 27103 varskip-0317-1_68_LEFT 1 + TAGCAGGTGACTCAGGTTTTGC -MN908947.3 27259 27288 varskip-0317-1_67_RIGHT 0 - AAGATTCCAAATGGAAACTTTAAAAGTCC -MN908947.3 27485 27511 varskip-0317-1_69_LEFT 0 + AAAAGAACCTTGCTCTTCTGGAACAT -MN908947.3 27647 27671 varskip-0317-1_68_RIGHT 1 - ACTTCCTCTTGTCTGATGAACAGT -MN908947.3 27835 27859 varskip-0317-1_70_LEFT 1 + CTTTTGGTTCTCACTTGAACTGCA -MN908947.3 28051 28076 varskip-0317-1_69_RIGHT 0 - GCACAATTCAATTAAAGGTGCTGAT -MN908947.3 28219 28243 varskip-0317-1_71_LEFT 0 + AGAGTATCATGACGTTCGTGTTGT -MN908947.3 28380 28400 varskip-0317-1_70_RIGHT 1 - GGGGCCGACGTTGTTTTGAT -MN908947.3 28627 28649 varskip-0317-1_72_LEFT 1 + GCTGGACTTCCCTATGGTGCTA -MN908947.3 28783 28805 varskip-0317-1_71_RIGHT 0 - CTCTGCTCCCTTCTGCGTAGAA -MN908947.3 29062 29088 varskip-0317-1_73_LEFT 0 + GCCACTAAAGCATACAATGTAACACA -MN908947.3 29203 29225 varskip-0317-1_72_RIGHT 1 - ACATTCCGAAGAACGCTGAAGC -MN908947.3 29270 29292 varskip-0317-1_74_LEFT 1 + ACACAGGTGCCATCAAATTGGA -MN908947.3 29617 29644 varskip-0317-1_73_RIGHT 0 - TTGTGCTATGTAGTTACGAGAATTCAT -MN908947.3 29799 29831 varskip-0317-1_74_RIGHT 1 - GCACTACTAAAATTAATTTTACACATTAGGGC diff --git a/sars-cov-2/varskip/vss2b/reference.fasta b/sars-cov-2/varskip/vss2b/reference.fasta deleted file mode 100644 index 4072957..0000000 --- a/sars-cov-2/varskip/vss2b/reference.fasta +++ /dev/null @@ -1,500 +0,0 @@ ->MN908947.3 -ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT -GTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACT -CACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC -TTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTT -CGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAAC -ACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGG -AGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATGGCACTTGTGG -CTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAA -ACGTTCGGATGCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACT -CGAAGGCATTCAGTACGGTCGTAGTGGTGAGACACTTGGTGTCCTTGTCCCTCATGTGGG -CGAAATACCAGTGGCTTACCGCAAGGTTCTTCTTCGTAAGAACGGTAATAAAGGAGCTGG -TGGCCATAGTTACGGCGCCGATCTAAAGTCATTTGACTTAGGCGACGAGCTTGGCACTGA -TCCTTATGAAGATTTTCAAGAAAACTGGAACACTAAACATAGCAGTGGTGTTACCCGTGA -ACTCATGCGTGAGCTTAACGGAGGGGCATACACTCGCTATGTCGATAACAACTTCTGTGG -CCCTGATGGCTACCCTCTTGAGTGCATTAAAGACCTTCTAGCACGTGCTGGTAAAGCTTC -ATGCACTTTGTCCGAACAACTGGACTTTATTGACACTAAGAGGGGTGTATACTGCTGCCG -TGAACATGAGCATGAAATTGCTTGGTACACGGAACGTTCTGAAAAGAGCTATGAATTGCA -GACACCTTTTGAAATTAAATTGGCAAAGAAATTTGACACCTTCAATGGGGAATGTCCAAA -TTTTGTATTTCCCTTAAATTCCATAATCAAGACTATTCAACCAAGGGTTGAAAAGAAAAA -GCTTGATGGCTTTATGGGTAGAATTCGATCTGTCTATCCAGTTGCGTCACCAAATGAATG -CAACCAAATGTGCCTTTCAACTCTCATGAAGTGTGATCATTGTGGTGAAACTTCATGGCA -GACGGGCGATTTTGTTAAAGCCACTTGCGAATTTTGTGGCACTGAGAATTTGACTAAAGA -AGGTGCCACTACTTGTGGTTACTTACCCCAAAATGCTGTTGTTAAAATTTATTGTCCAGC -ATGTCACAATTCAGAAGTAGGACCTGAGCATAGTCTTGCCGAATACCATAATGAATCTGG -CTTGAAAACCATTCTTCGTAAGGGTGGTCGCACTATTGCCTTTGGAGGCTGTGTGTTCTC -TTATGTTGGTTGCCATAACAAGTGTGCCTATTGGGTTCCACGTGCTAGCGCTAACATAGG -TTGTAACCATACAGGTGTTGTTGGAGAAGGTTCCGAAGGTCTTAATGACAACCTTCTTGA -AATACTCCAAAAAGAGAAAGTCAACATCAATATTGTTGGTGACTTTAAACTTAATGAAGA -GATCGCCATTATTTTGGCATCTTTTTCTGCTTCCACAAGTGCTTTTGTGGAAACTGTGAA -AGGTTTGGATTATAAAGCATTCAAACAAATTGTTGAATCCTGTGGTAATTTTAAAGTTAC -AAAAGGAAAAGCTAAAAAAGGTGCCTGGAATATTGGTGAACAGAAATCAATACTGAGTCC -TCTTTATGCATTTGCATCAGAGGCTGCTCGTGTTGTACGATCAATTTTCTCCCGCACTCT -TGAAACTGCTCAAAATTCTGTGCGTGTTTTACAGAAGGCCGCTATAACAATACTAGATGG -AATTTCACAGTATTCACTGAGACTCATTGATGCTATGATGTTCACATCTGATTTGGCTAC -TAACAATCTAGTTGTAATGGCCTACATTACAGGTGGTGTTGTTCAGTTGACTTCGCAGTG -GCTAACTAACATCTTTGGCACTGTTTATGAAAAACTCAAACCCGTCCTTGATTGGCTTGA -AGAGAAGTTTAAGGAAGGTGTAGAGTTTCTTAGAGACGGTTGGGAAATTGTTAAATTTAT -CTCAACCTGTGCTTGTGAAATTGTCGGTGGACAAATTGTCACCTGTGCAAAGGAAATTAA -GGAGAGTGTTCAGACATTCTTTAAGCTTGTAAATAAATTTTTGGCTTTGTGTGCTGACTC -TATCATTATTGGTGGAGCTAAACTTAAAGCCTTGAATTTAGGTGAAACATTTGTCACGCA -CTCAAAGGGATTGTACAGAAAGTGTGTTAAATCCAGAGAAGAAACTGGCCTACTCATGCC -TCTAAAAGCCCCAAAAGAAATTATCTTCTTAGAGGGAGAAACACTTCCCACAGAAGTGTT -AACAGAGGAAGTTGTCTTGAAAACTGGTGATTTACAACCATTAGAACAACCTACTAGTGA -AGCTGTTGAAGCTCCATTGGTTGGTACACCAGTTTGTATTAACGGGCTTATGTTGCTCGA -AATCAAAGACACAGAAAAGTACTGTGCCCTTGCACCTAATATGATGGTAACAAACAATAC -CTTCACACTCAAAGGCGGTGCACCAACAAAGGTTACTTTTGGTGATGACACTGTGATAGA -AGTGCAAGGTTACAAGAGTGTGAATATCACTTTTGAACTTGATGAAAGGATTGATAAAGT -ACTTAATGAGAAGTGCTCTGCCTATACAGTTGAACTCGGTACAGAAGTAAATGAGTTCGC -CTGTGTTGTGGCAGATGCTGTCATAAAAACTTTGCAACCAGTATCTGAATTACTTACACC -ACTGGGCATTGATTTAGATGAGTGGAGTATGGCTACATACTACTTATTTGATGAGTCTGG -TGAGTTTAAATTGGCTTCACATATGTATTGTTCTTTCTACCCTCCAGATGAGGATGAAGA -AGAAGGTGATTGTGAAGAAGAAGAGTTTGAGCCATCAACTCAATATGAGTATGGTACTGA -AGATGATTACCAAGGTAAACCTTTGGAATTTGGTGCCACTTCTGCTGCTCTTCAACCTGA -AGAAGAGCAAGAAGAAGATTGGTTAGATGATGATAGTCAACAAACTGTTGGTCAACAAGA -CGGCAGTGAGGACAATCAGACAACTACTATTCAAACAATTGTTGAGGTTCAACCTCAATT -AGAGATGGAACTTACACCAGTTGTTCAGACTATTGAAGTGAATAGTTTTAGTGGTTATTT -AAAACTTACTGACAATGTATACATTAAAAATGCAGACATTGTGGAAGAAGCTAAAAAGGT -AAAACCAACAGTGGTTGTTAATGCAGCCAATGTTTACCTTAAACATGGAGGAGGTGTTGC -AGGAGCCTTAAATAAGGCTACTAACAATGCCATGCAAGTTGAATCTGATGATTACATAGC -TACTAATGGACCACTTAAAGTGGGTGGTAGTTGTGTTTTAAGCGGACACAATCTTGCTAA -ACACTGTCTTCATGTTGTCGGCCCAAATGTTAACAAAGGTGAAGACATTCAACTTCTTAA -GAGTGCTTATGAAAATTTTAATCAGCACGAAGTTCTACTTGCACCATTATTATCAGCTGG -TATTTTTGGTGCTGACCCTATACATTCTTTAAGAGTTTGTGTAGATACTGTTCGCACAAA -TGTCTACTTAGCTGTCTTTGATAAAAATCTCTATGACAAACTTGTTTCAAGCTTTTTGGA -AATGAAGAGTGAAAAGCAAGTTGAACAAAAGATCGCTGAGATTCCTAAAGAGGAAGTTAA -GCCATTTATAACTGAAAGTAAACCTTCAGTTGAACAGAGAAAACAAGATGATAAGAAAAT -CAAAGCTTGTGTTGAAGAAGTTACAACAACTCTGGAAGAAACTAAGTTCCTCACAGAAAA -CTTGTTACTTTATATTGACATTAATGGCAATCTTCATCCAGATTCTGCCACTCTTGTTAG -TGACATTGACATCACTTTCTTAAAGAAAGATGCTCCATATATAGTGGGTGATGTTGTTCA -AGAGGGTGTTTTAACTGCTGTGGTTATACCTACTAAAAAGGCTGGTGGCACTACTGAAAT -GCTAGCGAAAGCTTTGAGAAAAGTGCCAACAGACAATTATATAACCACTTACCCGGGTCA -GGGTTTAAATGGTTACACTGTAGAGGAGGCAAAGACAGTGCTTAAAAAGTGTAAAAGTGC -CTTTTACATTCTACCATCTATTATCTCTAATGAGAAGCAAGAAATTCTTGGAACTGTTTC -TTGGAATTTGCGAGAAATGCTTGCACATGCAGAAGAAACACGCAAATTAATGCCTGTCTG -TGTGGAAACTAAAGCCATAGTTTCAACTATACAGCGTAAATATAAGGGTATTAAAATACA -AGAGGGTGTGGTTGATTATGGTGCTAGATTTTACTTTTACACCAGTAAAACAACTGTAGC -GTCACTTATCAACACACTTAACGATCTAAATGAAACTCTTGTTACAATGCCACTTGGCTA -TGTAACACATGGCTTAAATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCC -AGCTACAGTTTCTGTTTCTTCACCTGATGCTGTTACAGCGTATAATGGTTATCTTACTTC -TTCTTCTAAAACACCTGAAGAACATTTTATTGAAACCATCTCACTTGCTGGTTCCTATAA -AGATTGGTCCTATTCTGGACAATCTACACAACTAGGTATAGAATTTCTTAAGAGAGGTGA -TAAAAGTGTATATTACACTAGTAATCCTACCACATTCCACCTAGATGGTGAAGTTATCAC -CTTTGACAATCTTAAGACACTTCTTTCTTTGAGAGAAGTGAGGACTATTAAGGTGTTTAC -AACAGTAGACAACATTAACCTCCACACGCAAGTTGTGGACATGTCAATGACATATGGACA -ACAGTTTGGTCCAACTTATTTGGATGGAGCTGATGTTACTAAAATAAAACCTCATAATTC -ACATGAAGGTAAAACATTTTATGTTTTACCTAATGATGACACTCTACGTGTTGAGGCTTT -TGAGTACTACCACACAACTGATCCTAGTTTTCTGGGTAGGTACATGTCAGCATTAAATCA -CACTAAAAAGTGGAAATACCCACAAGTTAATGGTTTAACTTCTATTAAATGGGCAGATAA -CAACTGTTATCTTGCCACTGCATTGTTAACACTCCAACAAATAGAGTTGAAGTTTAATCC -ACCTGCTCTACAAGATGCTTATTACAGAGCAAGGGCTGGTGAAGCTGCTAACTTTTGTGC -ACTTATCTTAGCCTACTGTAATAAGACAGTAGGTGAGTTAGGTGATGTTAGAGAAACAAT -GAGTTACTTGTTTCAACATGCCAATTTAGATTCTTGCAAAAGAGTCTTGAACGTGGTGTG -TAAAACTTGTGGACAACAGCAGACAACCCTTAAGGGTGTAGAAGCTGTTATGTACATGGG -CACACTTTCTTATGAACAATTTAAGAAAGGTGTTCAGATACCTTGTACGTGTGGTAAACA -AGCTACAAAATATCTAGTACAACAGGAGTCACCTTTTGTTATGATGTCAGCACCACCTGC -TCAGTATGAACTTAAGCATGGTACATTTACTTGTGCTAGTGAGTACACTGGTAATTACCA -GTGTGGTCACTATAAACATATAACTTCTAAAGAAACTTTGTATTGCATAGACGGTGCTTT -ACTTACAAAGTCCTCAGAATACAAAGGTCCTATTACGGATGTTTTCTACAAAGAAAACAG -TTACACAACAACCATAAAACCAGTTACTTATAAATTGGATGGTGTTGTTTGTACAGAAAT -TGACCCTAAGTTGGACAATTATTATAAGAAAGACAATTCTTATTTCACAGAGCAACCAAT -TGATCTTGTACCAAACCAACCATATCCAAACGCAAGCTTCGATAATTTTAAGTTTGTATG -TGATAATATCAAATTTGCTGATGATTTAAACCAGTTAACTGGTTATAAGAAACCTGCTTC -AAGAGAGCTTAAAGTTACATTTTTCCCTGACTTAAATGGTGATGTGGTGGCTATTGATTA -TAAACACTACACACCCTCTTTTAAGAAAGGAGCTAAATTGTTACATAAACCTATTGTTTG -GCATGTTAACAATGCAACTAATAAAGCCACGTATAAACCAAATACCTGGTGTATACGTTG -TCTTTGGAGCACAAAACCAGTTGAAACATCAAATTCGTTTGATGTACTGAAGTCAGAGGA -CGCGCAGGGAATGGATAATCTTGCCTGCGAAGATCTAAAACCAGTCTCTGAAGAAGTAGT -GGAAAATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGT -AGGAGACATTATACTTAAACCAGCAAATAATAGTTTAAAAATTACAGAAGAGGTTGGCCA -CACAGATCTAATGGCTGCTTATGTAGACAATTCTAGTCTTACTATTAAGAAACCTAATGA -ATTATCTAGAGTATTAGGTTTGAAAACCCTTGCTACTCATGGTTTAGCTGCTGTTAATAG -TGTCCCTTGGGATACTATAGCTAATTATGCTAAGCCTTTTCTTAACAAAGTTGTTAGTAC -AACTACTAACATAGTTACACGGTGTTTAAACCGTGTTTGTACTAATTATATGCCTTATTT -CTTTACTTTATTGCTACAATTGTGTACTTTTACTAGAAGTACAAATTCTAGAATTAAAGC -ATCTATGCCGACTACTATAGCAAAGAATACTGTTAAGAGTGTCGGTAAATTTTGTCTAGA -GGCTTCATTTAATTATTTGAAGTCACCTAATTTTTCTAAACTGATAAATATTATAATTTG -GTTTTTACTATTAAGTGTTTGCCTAGGTTCTTTAATCTACTCAACCGCTGCTTTAGGTGT -TTTAATGTCTAATTTAGGCATGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAA -CTCTACTAATGTCACTATTGCAACCTACTGTACTGGTTCTATACCTTGTAGTGTTTGTCT -TAGTGGTTTAGATTCTTTAGACACCTATCCTTCTTTAGAAACTATACAAATTACCATTTC -ATCTTTTAAATGGGATTTAACTGCTTTTGGCTTAGTTGCAGAGTGGTTTTTGGCATATAT -TCTTTTCACTAGGTTTTTCTATGTACTTGGATTGGCTGCAATCATGCAATTGTTTTTCAG -CTATTTTGCAGTACATTTTATTAGTAATTCTTGGCTTATGTGGTTAATAATTAATCTTGT -ACAAATGGCCCCGATTTCAGCTATGGTTAGAATGTACATCTTCTTTGCATCATTTTATTA -TGTATGGAAAAGTTATGTGCATGTTGTAGACGGTTGTAATTCATCAACTTGTATGATGTG -TTACAAACGTAATAGAGCAACAAGAGTCGAATGTACAACTATTGTTAATGGTGTTAGAAG -GTCCTTTTATGTCTATGCTAATGGAGGTAAAGGCTTTTGCAAACTACACAATTGGAATTG -TGTTAATTGTGATACATTCTGTGCTGGTAGTACATTTATTAGTGATGAAGTTGCGAGAGA -CTTGTCACTACAGTTTAAAAGACCAATAAATCCTACTGACCAGTCTTCTTACATCGTTGA -TAGTGTTACAGTGAAGAATGGTTCCATCCATCTTTACTTTGATAAAGCTGGTCAAAAGAC -TTATGAAAGACATTCTCTCTCTCATTTTGTTAACTTAGACAACCTGAGAGCTAATAACAC -TAAAGGTTCATTGCCTATTAATGTTATAGTTTTTGATGGTAAATCAAAATGTGAAGAATC -ATCTGCAAAATCAGCGTCTGTTTACTACAGTCAGCTTATGTGTCAACCTATACTGTTACT -AGATCAGGCATTAGTGTCTGATGTTGGTGATAGTGCGGAAGTTGCAGTTAAAATGTTTGA -TGCTTACGTTAATACGTTTTCATCAACTTTTAACGTACCAATGGAAAAACTCAAAACACT -AGTTGCAACTGCAGAAGCTGAACTTGCAAAGAATGTGTCCTTAGACAATGTCTTATCTAC -TTTTATTTCAGCAGCTCGGCAAGGGTTTGTTGATTCAGATGTAGAAACTAAAGATGTTGT -TGAATGTCTTAAATTGTCACATCAATCTGACATAGAAGTTACTGGCGATAGTTGTAATAA -CTATATGCTCACCTATAACAAAGTTGAAAACATGACACCCCGTGACCTTGGTGCTTGTAT -TGACTGTAGTGCGCGTCATATTAATGCGCAGGTAGCAAAAAGTCACAACATTGCTTTGAT -ATGGAACGTTAAAGATTTCATGTCATTGTCTGAACAACTACGAAAACAAATACGTAGTGC -TGCTAAAAAGAATAACTTACCTTTTAAGTTGACATGTGCAACTACTAGACAAGTTGTTAA -TGTTGTAACAACAAAGATAGCACTTAAGGGTGGTAAAATTGTTAATAATTGGTTGAAGCA -GTTAATTAAAGTTACACTTGTGTTCCTTTTTGTTGCTGCTATTTTCTATTTAATAACACC -TGTTCATGTCATGTCTAAACATACTGACTTTTCAAGTGAAATCATAGGATACAAGGCTAT -TGATGGTGGTGTCACTCGTGACATAGCATCTACAGATACTTGTTTTGCTAACAAACATGC -TGATTTTGACACATGGTTTAGCCAGCGTGGTGGTAGTTATACTAATGACAAAGCTTGCCC -ATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCAC -GATATTACGCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGT -TGGTAACATCTGTTACACACCATCAAAACTTATAGAGTACACTGACTTTGCAACATCAGC -TTGTGTTTTGGCTGCTGAATGTACAATTTTTAAAGATGCTTCTGGTAAGCCAGTACCATA -TTGTTATGATACCAATGTACTAGAAGGTTCTGTTGCTTATGAAAGTTTACGCCCTGACAC -ACGTTATGTGCTCATGGATGGCTCTATTATTCAATTTCCTAACACCTACCTTGAAGGTTC -TGTTAGAGTGGTAACAACTTTTGATTCTGAGTACTGTAGGCACGGCACTTGTGAAAGATC -AGAAGCTGGTGTTTGTGTATCTACTAGTGGTAGATGGGTACTTAACAATGATTATTACAG -ATCTTTACCAGGAGTTTTCTGTGGTGTAGATGCTGTAAATTTACTTACTAATATGTTTAC -ACCACTAATTCAACCTATTGGTGCTTTGGACATATCAGCATCTATAGTAGCTGGTGGTAT -TGTAGCTATCGTAGTAACATGCCTTGCCTACTATTTTATGAGGTTTAGAAGAGCTTTTGG -TGAATACAGTCATGTAGTTGCCTTTAATACTTTACTATTCCTTATGTCATTCACTGTACT -CTGTTTAACACCAGTTTACTCATTCTTACCTGGTGTTTATTCTGTTATTTACTTGTACTT -GACATTTTATCTTACTAATGATGTTTCTTTTTTAGCACATATTCAGTGGATGGTTATGTT -CACACCTTTAGTACCTTTCTGGATAACAATTGCTTATATCATTTGTATTTCCACAAAGCA -TTTCTATTGGTTCTTTAGTAATTACCTAAAGAGACGTGTAGTCTTTAATGGTGTTTCCTT -TAGTACTTTTGAAGAAGCTGCGCTGTGCACCTTTTTGTTAAATAAAGAAATGTATCTAAA -GTTGCGTAGTGATGTGCTATTACCTCTTACGCAATATAATAGATACTTAGCTCTTTATAA -TAAGTACAAGTATTTTAGTGGAGCAATGGATACAACTAGCTACAGAGAAGCTGCTTGTTG -TCATCTCGCAAAGGCTCTCAATGACTTCAGTAACTCAGGTTCTGATGTTCTTTACCAACC -ACCACAAACCTCTATCACCTCAGCTGTTTTGCAGAGTGGTTTTAGAAAAATGGCATTCCC -ATCTGGTAAAGTTGAGGGTTGTATGGTACAAGTAACTTGTGGTACAACTACACTTAACGG -TCTTTGGCTTGATGACGTAGTTTACTGTCCAAGACATGTGATCTGCACCTCTGAAGACAT -GCTTAACCCTAATTATGAAGATTTACTCATTCGTAAGTCTAATCATAATTTCTTGGTACA -GGCTGGTAATGTTCAACTCAGGGTTATTGGACATTCTATGCAAAATTGTGTACTTAAGCT -TAAGGTTGATACAGCCAATCCTAAGACACCTAAGTATAAGTTTGTTCGCATTCAACCAGG -ACAGACTTTTTCAGTGTTAGCTTGTTACAATGGTTCACCATCTGGTGTTTACCAATGTGC -TATGAGGCCCAATTTCACTATTAAGGGTTCATTCCTTAATGGTTCATGTGGTAGTGTTGG -TTTTAACATAGATTATGACTGTGTCTCTTTTTGTTACATGCACCATATGGAATTACCAAC -TGGAGTTCATGCTGGCACAGACTTAGAAGGTAACTTTTATGGACCTTTTGTTGACAGGCA -AACAGCACAAGCAGCTGGTACGGACACAACTATTACAGTTAATGTTTTAGCTTGGTTGTA -CGCTGCTGTTATAAATGGAGACAGGTGGTTTCTCAATCGATTTACCACAACTCTTAATGA -CTTTAACCTTGTGGCTATGAAGTACAATTATGAACCTCTAACACAAGACCATGTTGACAT -ACTAGGACCTCTTTCTGCTCAAACTGGAATTGCCGTTTTAGATATGTGTGCTTCATTAAA -AGAATTACTGCAAAATGGTATGAATGGACGTACCATATTGGGTAGTGCTTTATTAGAAGA -TGAATTTACACCTTTTGATGTTGTTAGACAATGCTCAGGTGTTACTTTCCAAAGTGCAGT -GAAAAGAACAATCAAGGGTACACACCACTGGTTGTTACTCACAATTTTGACTTCACTTTT -AGTTTTAGTCCAGAGTACTCAATGGTCTTTGTTCTTTTTTTTGTATGAAAATGCCTTTTT -ACCTTTTGCTATGGGTATTATTGCTATGTCTGCTTTTGCAATGATGTTTGTCAAACATAA -GCATGCATTTCTCTGTTTGTTTTTGTTACCTTCTCTTGCCACTGTAGCTTATTTTAATAT -GGTCTATATGCCTGCTAGTTGGGTGATGCGTATTATGACATGGTTGGATATGGTTGATAC -TAGTTTGTCTGGTTTTAAGCTAAAAGACTGTGTTATGTATGCATCAGCTGTAGTGTTACT -AATCCTTATGACAGCAAGAACTGTGTATGATGATGGTGCTAGGAGAGTGTGGACACTTAT -GAATGTCTTGACACTCGTTTATAAAGTTTATTATGGTAATGCTTTAGATCAAGCCATTTC -CATGTGGGCTCTTATAATCTCTGTTACTTCTAACTACTCAGGTGTAGTTACAACTGTCAT -GTTTTTGGCCAGAGGTATTGTTTTTATGTGTGTTGAGTATTGCCCTATTTTCTTCATAAC -TGGTAATACACTTCAGTGTATAATGCTAGTTTATTGTTTCTTAGGCTATTTTTGTACTTG -TTACTTTGGCCTCTTTTGTTTACTCAACCGCTACTTTAGACTGACTCTTGGTGTTTATGA -TTACTTAGTTTCTACACAGGAGTTTAGATATATGAATTCACAGGGACTACTCCCACCCAA -GAATAGCATAGATGCCTTCAAACTCAACATTAAATTGTTGGGTGTTGGTGGCAAACCTTG -TATCAAAGTAGCCACTGTACAGTCTAAAATGTCAGATGTAAAGTGCACATCAGTAGTCTT -ACTCTCAGTTTTGCAACAACTCAGAGTAGAATCATCATCTAAATTGTGGGCTCAATGTGT -CCAGTTACACAATGACATTCTCTTAGCTAAAGATACTACTGAAGCCTTTGAAAAAATGGT -TTCACTACTTTCTGTTTTGCTTTCCATGCAGGGTGCTGTAGACATAAACAAGCTTTGTGA -AGAAATGCTGGACAACAGGGCAACCTTACAAGCTATAGCCTCAGAGTTTAGTTCCCTTCC -ATCATATGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAGCAGGCTGTTGCTAATGGTGA -TTCTGAAGTTGTTCTTAAAAAGTTGAAGAAGTCTTTGAATGTGGCTAAATCTGAATTTGA -CCGTGATGCAGCCATGCAACGTAAGTTGGAAAAGATGGCTGATCAAGCTATGACCCAAAT -GTATAAACAGGCTAGATCTGAGGACAAGAGGGCAAAAGTTACTAGTGCTATGCAGACAAT -GCTTTTCACTATGCTTAGAAAGTTGGATAATGATGCACTCAACAACATTATCAACAATGC -AAGAGATGGTTGTGTTCCCTTGAACATAATACCTCTTACAACAGCAGCCAAACTAATGGT -TGTCATACCAGACTATAACACATATAAAAATACGTGTGATGGTACAACATTTACTTATGC -ATCAGCATTGTGGGAAATCCAACAGGTTGTAGATGCAGATAGTAAAATTGTTCAACTTAG -TGAAATTAGTATGGACAATTCACCTAATTTAGCATGGCCTCTTATTGTAACAGCTTTAAG -GGCCAATTCTGCTGTCAAATTACAGAATAATGAGCTTAGTCCTGTTGCACTACGACAGAT -GTCTTGTGCTGCCGGTACTACACAAACTGCTTGCACTGATGACAATGCGTTAGCTTACTA -CAACACAACAAAGGGAGGTAGGTTTGTACTTGCACTGTTATCCGATTTACAGGATTTGAA -ATGGGCTAGATTCCCTAAGAGTGATGGAACTGGTACTATCTATACAGAACTGGAACCACC -TTGTAGGTTTGTTACAGACACACCTAAAGGTCCTAAAGTGAAGTATTTATACTTTATTAA -AGGATTAAACAACCTAAATAGAGGTATGGTACTTGGTAGTTTAGCTGCCACAGTACGTCT -ACAAGCTGGTAATGCAACAGAAGTGCCTGCCAATTCAACTGTATTATCTTTCTGTGCTTT -TGCTGTAGATGCTGCTAAAGCTTACAAAGATTATCTAGCTAGTGGGGGACAACCAATCAC -TAATTGTGTTAAGATGTTGTGTACACACACTGGTACTGGTCAGGCAATAACAGTTACACC -GGAAGCCAATATGGATCAAGAATCCTTTGGTGGTGCATCGTGTTGTCTGTACTGCCGTTG -CCACATAGATCATCCAAATCCTAAAGGATTTTGTGACTTAAAAGGTAAGTATGTACAAAT -ACCTACAACTTGTGCTAATGACCCTGTGGGTTTTACACTTAAAAACACAGTCTGTACCGT -CTGCGGTATGTGGAAAGGTTATGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCA -GTCAGCTGATGCACAATCGTTTTTAAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACA -CCGTGCGGCACAGGCACTAGTACTGATGTCGTATACAGGGCTTTTGACATCTACAATGAT -AAAGTAGCTGGTTTTGCTAAATTCCTAAAAACTAATTGTTGTCGCTTCCAAGAAAAGGAC -GAAGATGACAATTTAATTGATTCTTACTTTGTAGTTAAGAGACACACTTTCTCTAACTAC -CAACATGAAGAAACAATTTATAATTTACTTAAGGATTGTCCAGCTGTTGCTAAACATGAC -TTCTTTAAGTTTAGAATAGACGGTGACATGGTACCACATATATCACGTCAACGTCTTACT -AAATACACAATGGCAGACCTCGTCTATGCTTTAAGGCATTTTGATGAAGGTAATTGTGAC -ACATTAAAAGAAATACTTGTCACATACAATTGTTGTGATGATGATTATTTCAATAAAAAG -GACTGGTATGATTTTGTAGAAAACCCAGATATATTACGCGTATACGCCAACTTAGGTGAA -CGTGTACGCCAAGCTTTGTTAAAAACAGTACAATTCTGTGATGCCATGCGAAATGCTGGT -ATTGTTGGTGTACTGACATTAGATAATCAAGATCTCAATGGTAACTGGTATGATTTCGGT -GATTTCATACAAACCACGCCAGGTAGTGGAGTTCCTGTTGTAGATTCTTATTATTCATTG -TTAATGCCTATATTAACCTTGACCAGGGCTTTAACTGCAGAGTCACATGTTGACACTGAC -TTAACAAAGCCTTACATTAAGTGGGATTTGTTAAAATATGACTTCACGGAAGAGAGGTTA -AAACTCTTTGACCGTTATTTTAAATATTGGGATCAGACATACCACCCAAATTGTGTTAAC -TGTTTGGATGACAGATGCATTCTGCATTGTGCAAACTTTAATGTTTTATTCTCTACAGTG -TTCCCACCTACAAGTTTTGGACCACTAGTGAGAAAAATATTTGTTGATGGTGTTCCATTT -GTAGTTTCAACTGGATACCACTTCAGAGAGCTAGGTGTTGTACATAATCAGGATGTAAAC -TTACATAGCTCTAGACTTAGTTTTAAGGAATTACTTGTGTATGCTGCTGACCCTGCTATG -CACGCTGCTTCTGGTAATCTATTACTAGATAAACGCACTACGTGCTTTTCAGTAGCTGCA -CTTACTAACAATGTTGCTTTTCAAACTGTCAAACCCGGTAATTTTAACAAAGACTTCTAT -GACTTTGCTGTGTCTAAGGGTTTCTTTAAGGAAGGAAGTTCTGTTGAATTAAAACACTTC -TTCTTTGCTCAGGATGGTAATGCTGCTATCAGCGATTATGACTACTATCGTTATAATCTA -CCAACAATGTGTGATATCAGACAACTACTATTTGTAGTTGAAGTTGTTGATAAGTACTTT -GATTGTTACGATGGTGGCTGTATTAATGCTAACCAAGTCATCGTCAACAACCTAGACAAA -TCAGCTGGTTTTCCATTTAATAAATGGGGTAAGGCTAGACTTTATTATGATTCAATGAGT -TATGAGGATCAAGATGCACTTTTCGCATATACAAAACGTAATGTCATCCCTACTATAACT -CAAATGAATCTTAAGTATGCCATTAGTGCAAAGAATAGAGCTCGCACCGTAGCTGGTGTC -TCTATCTGTAGTACTATGACCAATAGACAGTTTCATCAAAAATTATTGAAATCAATAGCC -GCCACTAGAGGAGCTACTGTAGTAATTGGAACAAGCAAATTCTATGGTGGTTGGCACAAC -ATGTTAAAAACTGTTTATAGTGATGTAGAAAACCCTCACCTTATGGGTTGGGATTATCCT -AAATGTGATAGAGCCATGCCTAACATGCTTAGAATTATGGCCTCACTTGTTCTTGCTCGC -AAACATACAACGTGTTGTAGCTTGTCACACCGTTTCTATAGATTAGCTAATGAGTGTGCT -CAAGTATTGAGTGAAATGGTCATGTGTGGCGGTTCACTATATGTTAAACCAGGTGGAACC -TCATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTTTTAACATTTGTCAAGCTGTC -ACGGCCAATGTTAATGCACTTTTATCTACTGATGGTAACAAAATTGCCGATAAGTATGTC -CGCAATTTACAACACAGACTTTATGAGTGTCTCTATAGAAATAGAGATGTTGACACAGAC -TTTGTGAATGAGTTTTACGCATATTTGCGTAAACATTTCTCAATGATGATACTCTCTGAC -GATGCTGTTGTGTGTTTCAATAGCACTTATGCATCTCAAGGTCTAGTGGCTAGCATAAAG -AACTTTAAGTCAGTTCTTTATTATCAAAACAATGTTTTTATGTCTGAAGCAAAATGTTGG -ACTGAGACTGACCTTACTAAAGGACCTCATGAATTTTGCTCTCAACATACAATGCTAGTT -AAACAGGGTGATGATTATGTGTACCTTCCTTACCCAGATCCATCAAGAATCCTAGGGGCC -GGCTGTTTTGTAGATGATATCGTAAAAACAGATGGTACACTTATGATTGAACGGTTCGTG -TCTTTAGCTATAGATGCTTACCCACTTACTAAACATCCTAATCAGGAGTATGCTGATGTC -TTTCATTTGTACTTACAATACATAAGAAAGCTACATGATGAGTTAACAGGACACATGTTA -GACATGTATTCTGTTATGCTTACTAATGATAACACTTCAAGGTATTGGGAACCTGAGTTT -TATGAGGCTATGTACACACCGCATACAGTCTTACAGGCTGTTGGGGCTTGTGTTCTTTGC -AATTCACAGACTTCATTAAGATGTGGTGCTTGCATACGTAGACCATTCTTATGTTGTAAA -TGCTGTTACGACCATGTCATATCAACATCACATAAATTAGTCTTGTCTGTTAATCCGTAT -GTTTGCAATGCTCCAGGTTGTGATGTCACAGATGTGACTCAACTTTACTTAGGAGGTATG -AGCTATTATTGTAAATCACATAAACCACCCATTAGTTTTCCATTGTGTGCTAATGGACAA -GTTTTTGGTTTATATAAAAATACATGTGTTGGTAGCGATAATGTTACTGACTTTAATGCA -ATTGCAACATGTGACTGGACAAATGCTGGTGATTACATTTTAGCTAACACCTGTACTGAA -AGACTCAAGCTTTTTGCAGCAGAAACGCTCAAAGCTACTGAGGAGACATTTAAACTGTCT -TATGGTATTGCTACTGTACGTGAAGTGCTGTCTGACAGAGAATTACATCTTTCATGGGAA -GTTGGTAAACCTAGACCACCACTTAACCGAAATTATGTCTTTACTGGTTATCGTGTAACT -AAAAACAGTAAAGTACAAATAGGAGAGTACACCTTTGAAAAAGGTGACTATGGTGATGCT -GTTGTTTACCGAGGTACAACAACTTACAAATTAAATGTTGGTGATTATTTTGTGCTGACA -TCACATACAGTAATGCCATTAAGTGCACCTACACTAGTGCCACAAGAGCACTATGTTAGA -ATTACTGGCTTATACCCAACACTCAATATCTCAGATGAGTTTTCTAGCAATGTTGCAAAT -TATCAAAAGGTTGGTATGCAAAAGTATTCTACACTCCAGGGACCACCTGGTACTGGTAAG -AGTCATTTTGCTATTGGCCTAGCTCTCTACTACCCTTCTGCTCGCATAGTGTATACAGCT -TGCTCTCATGCCGCTGTTGATGCACTATGTGAGAAGGCATTAAAATATTTGCCTATAGAT -AAATGTAGTAGAATTATACCTGCACGTGCTCGTGTAGAGTGTTTTGATAAATTCAAAGTG -AATTCAACATTAGAACAGTATGTCTTTTGTACTGTAAATGCATTGCCTGAGACGACAGCA -GATATAGTTGTCTTTGATGAAATTTCAATGGCCACAAATTATGATTTGAGTGTTGTCAAT -GCCAGATTACGTGCTAAGCACTATGTGTACATTGGCGACCCTGCTCAATTACCTGCACCA -CGCACATTGCTAACTAAGGGCACACTAGAACCAGAATATTTCAATTCAGTGTGTAGACTT -ATGAAAACTATAGGTCCAGACATGTTCCTCGGAACTTGTCGGCGTTGTCCTGCTGAAATT -GTTGACACTGTGAGTGCTTTGGTTTATGATAATAAGCTTAAAGCACATAAAGACAAATCA -GCTCAATGCTTTAAAATGTTTTATAAGGGTGTTATCACGCATGATGTTTCATCTGCAATT -AACAGGCCACAAATAGGCGTGGTAAGAGAATTCCTTACACGTAACCCTGCTTGGAGAAAA -GCTGTCTTTATTTCACCTTATAATTCACAGAATGCTGTAGCCTCAAAGATTTTGGGACTA -CCAACTCAAACTGTTGATTCATCACAGGGCTCAGAATATGACTATGTCATATTCACTCAA -ACCACTGAAACAGCTCACTCTTGTAATGTAAACAGATTTAATGTTGCTATTACCAGAGCA -AAAGTAGGCATACTTTGCATAATGTCTGATAGAGACCTTTATGACAAGTTGCAATTTACA -AGTCTTGAAATTCCACGTAGGAATGTGGCAACTTTACAAGCTGAAAATGTAACAGGACTC -TTTAAAGATTGTAGTAAGGTAATCACTGGGTTACATCCTACACAGGCACCTACACACCTC -AGTGTTGACACTAAATTCAAAACTGAAGGTTTATGTGTTGACATACCTGGCATACCTAAG -GACATGACCTATAGAAGACTCATCTCTATGATGGGTTTTAAAATGAATTATCAAGTTAAT -GGTTACCCTAACATGTTTATCACCCGCGAAGAAGCTATAAGACATGTACGTGCATGGATT -GGCTTCGATGTCGAGGGGTGTCATGCTACTAGAGAAGCTGTTGGTACCAATTTACCTTTA -CAGCTAGGTTTTTCTACAGGTGTTAACCTAGTTGCTGTACCTACAGGTTATGTTGATACA -CCTAATAATACAGATTTTTCCAGAGTTAGTGCTAAACCACCGCCTGGAGATCAATTTAAA -CACCTCATACCACTTATGTACAAAGGACTTCCTTGGAATGTAGTGCGTATAAAGATTGTA -CAAATGTTAAGTGACACACTTAAAAATCTCTCTGACAGAGTCGTATTTGTCTTATGGGCA -CATGGCTTTGAGTTGACATCTATGAAGTATTTTGTGAAAATAGGACCTGAGCGCACCTGT -TGTCTATGTGATAGACGTGCCACATGCTTTTCCACTGCTTCAGACACTTATGCCTGTTGG -CATCATTCTATTGGATTTGATTACGTCTATAATCCGTTTATGATTGATGTTCAACAATGG -GGTTTTACAGGTAACCTACAAAGCAACCATGATCTGTATTGTCAAGTCCATGGTAATGCA -CATGTAGCTAGTTGTGATGCAATCATGACTAGGTGTCTAGCTGTCCACGAGTGCTTTGTT -AAGCGTGTTGACTGGACTATTGAATATCCTATAATTGGTGATGAACTGAAGATTAATGCG -GCTTGTAGAAAGGTTCAACACATGGTTGTTAAAGCTGCATTATTAGCAGACAAATTCCCA -GTTCTTCACGACATTGGTAACCCTAAAGCTATTAAGTGTGTACCTCAAGCTGATGTAGAA -TGGAAGTTCTATGATGCACAGCCTTGTAGTGACAAAGCTTATAAAATAGAAGAATTATTC -TATTCTTATGCCACACATTCTGACAAATTCACAGATGGTGTATGCCTATTTTGGAATTGC -AATGTCGATAGATATCCTGCTAATTCCATTGTTTGTAGATTTGACACTAGAGTGCTATCT -AACCTTAACTTGCCTGGTTGTGATGGTGGCAGTTTGTATGTAAATAAACATGCATTCCAC -ACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTAC -TCTGACAGTCCATGTGAGTCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCA -CTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGTGCTGTCTGTAGACATCAT -GCTAATGAGTACAGATTGTATCTCGATGCTTATAACATGATGATCTCAGCTGGCTTTAGC -TTGTGGGTTTACAAACAATTTGATACTTATAACCTCTGGAACACTTTTACAAGACTTCAG -AGTTTAGAAAATGTGGCTTTTAATGTTGTAAATAAGGGACACTTTGATGGACAACAGGGT -GAAGTACCAGTTTCTATCATTAATAACACTGTTTACACAAAAGTTGATGGTGTTGATGTA -GAATTGTTTGAAAATAAAACAACATTACCTGTTAATGTAGCATTTGAGCTTTGGGCTAAG -CGCAACATTAAACCAGTACCAGAGGTGAAAATACTCAATAATTTGGGTGTGGACATTGCT -GCTAATACTGTGATCTGGGACTACAAAAGAGATGCTCCAGCACATATATCTACTATTGGT -GTTTGTTCTATGACTGACATAGCCAAGAAACCAACTGAAACGATTTGTGCACCACTCACT -GTCTTTTTTGATGGTAGAGTTGATGGTCAAGTAGACTTATTTAGAAATGCCCGTAATGGT -GTTCTTATTACAGAAGGTAGTGTTAAAGGTTTACAACCATCTGTAGGTCCCAAACAAGCT -AGTCTTAATGGAGTCACATTAATTGGAGAAGCCGTAAAAACACAGTTCAATTATTATAAG -AAAGTTGATGGTGTTGTCCAACAATTACCTGAAACTTACTTTACTCAGAGTAGAAATTTA -CAAGAATTTAAACCCAGGAGTCAAATGGAAATTGATTTCTTAGAATTAGCTATGGATGAA -TTCATTGAACGGTATAAATTAGAAGGCTATGCCTTCGAACATATCGTTTATGGAGATTTT -AGTCATAGTCAGTTAGGTGGTTTACATCTACTGATTGGACTAGCTAAACGTTTTAAGGAA -TCACCTTTTGAATTAGAAGATTTTATTCCTATGGACAGTACAGTTAAAAACTATTTCATA -ACAGATGCGCAAACAGGTTCATCTAAGTGTGTGTGTTCTGTTATTGATTTATTACTTGAT -GATTTTGTTGAAATAATAAAATCCCAAGATTTATCTGTAGTTTCTAAGGTTGTCAAAGTG -ACTATTGACTATACAGAAATTTCATTTATGCTTTGGTGTAAAGATGGCCATGTAGAAACA -TTTTACCCAAAATTACAATCTAGTCAAGCGTGGCAACCGGGTGTTGCTATGCCTAATCTT -TACAAAATGCAAAGAATGCTATTAGAAAAGTGTGACCTTCAAAATTATGGTGATAGTGCA -ACATTACCTAAAGGCATAATGATGAATGTCGCAAAATATACTCAACTGTGTCAATATTTA -AACACATTAACATTAGCTGTACCCTATAATATGAGAGTTATACATTTTGGTGCTGGTTCT -GATAAAGGAGTTGCACCAGGTACAGCTGTTTTAAGACAGTGGTTGCCTACGGGTACGCTG -CTTGTCGATTCAGATCTTAATGACTTTGTCTCTGATGCAGATTCAACTTTGATTGGTGAT -TGTGCAACTGTACATACAGCTAATAAATGGGATCTCATTATTAGTGATATGTACGACCCT -AAGACTAAAAATGTTACAAAAGAAAATGACTCTAAAGAGGGTTTTTTCACTTACATTTGT -GGGTTTATACAACAAAAGCTAGCTCTTGGAGGTTCCGTGGCTATAAAGATAACAGAACAT -TCTTGGAATGCTGATCTTTATAAGCTCATGGGACACTTCGCATGGTGGACAGCCTTTGTT -ACTAATGTGAATGCGTCATCATCTGAAGCATTTTTAATTGGATGTAATTATCTTGGCAAA -CCACGCGAACAAATAGATGGTTATGTCATGCATGCAAATTACATATTTTGGAGGAATACA -AATCCAATTCAGTTGTCTTCCTATTCTTTATTTGACATGAGTAAATTTCCCCTTAAATTA -AGGGGTACTGCTGTTATGTCTTTAAAAGAAGGTCAAATCAATGATATGATTTTATCTCTT -CTTAGTAAAGGTAGACTTATAATTAGAGAAAACAACAGAGTTGTTATTTCTAGTGATGTT -CTTGTTAACAACTAAACGAACAATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAG -TCAGTGTGTTAATCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCAC -ACGTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGA -CTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCATGCTATACATGTCTCTGGGAC -CAATGGTACTAAGAGGTTTGATAACCCTGTCCTACCATTTAATGATGGTGTTTATTTTGC -TTCCACTGAGAAGTCTAACATAATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAA -GACCCAGTCCCTACTTATTGTTAATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATT -TCAATTTTGTAATGATCCATTTTTGGGTGTTTATTACCACAAAAACAACAAAAGTTGGAT -GGAAAGTGAGTTCAGAGTTTATTCTAGTGCGAATAATTGCACTTTTGAATATGTCTCTCA -GCCTTTTCTTATGGACCTTGAAGGAAAACAGGGTAATTTCAAAAATCTTAGGGAATTTGT -GTTTAAGAATATTGATGGTTATTTTAAAATATATTCTAAGCACACGCCTATTAATTTAGT -GCGTGATCTCCCTCAGGGTTTTTCGGCTTTAGAACCATTGGTAGATTTGCCAATAGGTAT -TAACATCACTAGGTTTCAAACTTTACTTGCTTTACATAGAAGTTATTTGACTCCTGGTGA -TTCTTCTTCAGGTTGGACAGCTGGTGCTGCAGCTTATTATGTGGGTTATCTTCAACCTAG -GACTTTTCTATTAAAATATAATGAAAATGGAACCATTACAGATGCTGTAGACTGTGCACT -TGACCCTCTCTCAGAAACAAAGTGTACGTTGAAATCCTTCACTGTAGAAAAAGGAATCTA -TCAAACTTCTAACTTTAGAGTCCAACCAACAGAATCTATTGTTAGATTTCCTAATATTAC -AAACTTGTGCCCTTTTGGTGAAGTTTTTAACGCCACCAGATTTGCATCTGTTTATGCTTG -GAACAGGAAGAGAATCAGCAACTGTGTTGCTGATTATTCTGTCCTATATAATTCCGCATC -ATTTTCCACTTTTAAGTGTTATGGAGTGTCTCCTACTAAATTAAATGATCTCTGCTTTAC -TAATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGG -GCAAACTGGAAAGATTGCTGATTATAATTATAAATTACCAGATGATTTTACAGGCTGCGT -TATAGCTTGGAATTCTAACAATCTTGATTCTAAGGTTGGTGGTAATTATAATTACCTGTA -TAGATTGTTTAGGAAGTCTAATCTCAAACCTTTTGAGAGAGATATTTCAACTGAAATCTA -TCAGGCCGGTAGCACACCTTGTAATGGTGTTGAAGGTTTTAATTGTTACTTTCCTTTACA -ATCATATGGTTTCCAACCCACTAATGGTGTTGGTTACCAACCATACAGAGTAGTAGTACT -TTCTTTTGAACTTCTACATGCACCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTT -GGTTAAAAACAAATGTGTCAATTTCAACTTCAATGGTTTAACAGGCACAGGTGTTCTTAC -TGAGTCTAACAAAAAGTTTCTGCCTTTCCAACAATTTGGCAGAGACATTGCTGACACTAC -TGATGCTGTCCGTGATCCACAGACACTTGAGATTCTTGACATTACACCATGTTCTTTTGG -TGGTGTCAGTGTTATAACACCAGGAACAAATACTTCTAACCAGGTTGCTGTTCTTTATCA -GGATGTTAACTGCACAGAAGTCCCTGTTGCTATTCATGCAGATCAACTTACTCCTACTTG -GCGTGTTTATTCTACAGGTTCTAATGTTTTTCAAACACGTGCAGGCTGTTTAATAGGGGC -TGAACATGTCAACAACTCATATGAGTGTGACATACCCATTGGTGCAGGTATATGCGCTAG -TTATCAGACTCAGACTAATTCTCCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATCAT -TGCCTACACTATGTCACTTGGTGCAGAAAATTCAGTTGCTTACTCTAATAACTCTATTGC -CATACCCACAAATTTTACTATTAGTGTTACCACAGAAATTCTACCAGTGTCTATGACCAA -GACATCAGTAGATTGTACAATGTACATTTGTGGTGATTCAACTGAATGCAGCAATCTTTT -GTTGCAATATGGCAGTTTTTGTACACAATTAAACCGTGCTTTAACTGGAATAGCTGTTGA -ACAAGACAAAAACACCCAAGAAGTTTTTGCACAAGTCAAACAAATTTACAAAACACCACC -AATTAAAGATTTTGGTGGTTTTAATTTTTCACAAATATTACCAGATCCATCAAAACCAAG -CAAGAGGTCATTTATTGAAGATCTACTTTTCAACAAAGTGACACTTGCAGATGCTGGCTT -CATCAAACAATATGGTGATTGCCTTGGTGATATTGCTGCTAGAGACCTCATTTGTGCACA -AAAGTTTAACGGCCTTACTGTTTTGCCACCTTTGCTCACAGATGAAATGATTGCTCAATA -CACTTCTGCACTGTTAGCGGGTACAATCACTTCTGGTTGGACCTTTGGTGCAGGTGCTGC -ATTACAAATACCATTTGCTATGCAAATGGCTTATAGGTTTAATGGTATTGGAGTTACACA -GAATGTTCTCTATGAGAACCAAAAATTGATTGCCAACCAATTTAATAGTGCTATTGGCAA -AATTCAAGACTCACTTTCTTCCACAGCAAGTGCACTTGGAAAACTTCAAGATGTGGTCAA -CCAAAATGCACAAGCTTTAAACACGCTTGTTAAACAACTTAGCTCCAATTTTGGTGCAAT -TTCAAGTGTTTTAAATGATATCCTTTCACGTCTTGACAAAGTTGAGGCTGAAGTGCAAAT -TGATAGGTTGATCACAGGCAGACTTCAAAGTTTGCAGACATATGTGACTCAACAATTAAT -TAGAGCTGCAGAAATCAGAGCTTCTGCTAATCTTGCTGCTACTAAAATGTCAGAGTGTGT -ACTTGGACAATCAAAAAGAGTTGATTTTTGTGGAAAGGGCTATCATCTTATGTCCTTCCC -TCAGTCAGCACCTCATGGTGTAGTCTTCTTGCATGTGACTTATGTCCCTGCACAAGAAAA -GAACTTCACAACTGCTCCTGCCATTTGTCATGATGGAAAAGCACACTTTCCTCGTGAAGG -TGTCTTTGTTTCAAATGGCACACACTGGTTTGTAACACAAAGGAATTTTTATGAACCACA -AATCATTACTACAGACAACACATTTGTGTCTGGTAACTGTGATGTTGTAATAGGAATTGT -CAACAACACAGTTTATGATCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGA -TAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGGTGACATCTCTGGCATTAA -TGCTTCAGTTGTAAACATTCAAAAAGAAATTGACCGCCTCAATGAGGTTGCCAAGAATTT -AAATGAATCTCTCATCGATCTCCAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCC -ATGGTACATTTGGCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTAT -GCTTTGCTGTATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTG -CTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACAC -ATAAACGAACTTATGGATTTGTTTATGAGAATCTTCACAATTGGAACTGTAACTTTGAAG -CAAGGTGAAATCAAGGATGCTACTCCTTCAGATTTTGTTCGCGCTACTGCAACGATACCG -ATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCACTTCTTGCTGTTTTT -CAGAGCGCTTCCAAAATCATAACCCTCAAAAAGAGATGGCAACTAGCACTCTCCAAGGGT -GTTCACTTTGTTTGCAACTTGCTGTTGTTGTTTGTAACAGTTTACTCACACCTTTTGCTC -GTTGCTGCTGGCCTTGAAGCCCCTTTTCTCTATCTTTATGCTTTAGTCTACTTCTTGCAG -AGTATAAACTTTGTAAGAATAATAATGAGGCTTTGGCTTTGCTGGAAATGCCGTTCCAAA -AACCCATTACTTTATGATGCCAACTATTTTCTTTGCTGGCATACTAATTGTTACGACTAT -TGTATACCTTACAATAGTGTAACTTCTTCAATTGTCATTACTTCAGGTGATGGCACAACA -AGTCCTATTTCTGAACATGACTACCAGATTGGTGGTTATACTGAAAAATGGGAATCTGGA -GTAAAAGACTGTGTTGTATTACACAGTTACTTCACTTCAGACTATTACCAGCTGTACTCA -ACTCAATTGAGTACAGACACTGGTGTTGAACATGTTACCTTCTTCATCTACAATAAAATT -GTTGATGAGCCTGAAGAACATGTCCAAATTCACACAATCGACGGTTCATCCGGAGTTGTT -AATCCAGTAATGGAACCAATTTATGATGAACCGACGACGACTACTAGCGTGCCTTTGTAA -GCACAAGCTGATGAGTACGAACTTATGTACTCATTCGTTTCGGAAGAGACAGGTACGTTA -ATAGTTAATAGCGTACTTCTTTTTCTTGCTTTCGTGGTATTCTTGCTAGTTACACTAGCC -ATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTTGTA -AAACCTTCTTTTTACGTTTACTCTCGTGTTAAAAATCTGAATTCTTCTAGAGTTCCTGAT -CTTCTGGTCTAAACGAACTAAATATTATATTAGTTTTTCTGTTTGGAACTTTAATTTTAG -CCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTCCTTGAACAAT -GGAACCTAGTAATAGGTTTCCTATTCCTTACATGGATTTGTCTTCTACAATTTGCCTATG -CCAACAGGAATAGGTTTTTGTATATAATTAAGTTAATTTTCCTCTGGCTGTTATGGCCAG -TAACTTTAGCTTGTTTTGTGCTTGCTGCTGTTTACAGAATAAATTGGATCACCGGTGGAA -TTGCTATCGCAATGGCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTT -TCAGACTGTTTGCGCGTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAACATTCTTC -TCAACGTGCCACTCCATGGCACTATTCTGACCAGACCGCTTCTAGAAAGTGAACTCGTAA -TCGGAGCTGTGATCCTTCGTGGACATCTTCGTATTGCTGGACACCATCTAGGACGCTGTG -ACATCAAGGACCTGCCTAAAGAAATCACTGTTGCTACATCACGAACGCTTTCTTATTACA -AATTGGGAGCTTCGCAGCGTGTAGCAGGTGACTCAGGTTTTGCTGCATACAGTCGCTACA -GGATTGGCAACTATAAATTAAACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGC -TTGTACAGTAAGTGACAACAGATGTTTCATCTCGTTGACTTTCAGGTTACTATAGCAGAG -ATATTACTAATTATTATGAGGACTTTTAAAGTTTCCATTTGGAATCTTGATTACATCATA -AACCTCATAATTAAAAATTTATCTAAGTCACTAACTGAGAATAAATATTCTCAATTAGAT -GAAGAGCAACCAATGGAGATTGATTAAACGAACATGAAAATTATTCTTTTCTTGGCACTG -ATAACACTCGCTACTTGTGAGCTTTATCACTACCAAGAGTGTGTTAGAGGTACAACAGTA -CTTTTAAAAGAACCTTGCTCTTCTGGAACATACGAGGGCAATTCACCATTTCATCCTCTA -GCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGAC -GGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGA -CAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTT -ATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGATTGAACTTTCATTAATTGACT -TCTATTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTATCTTTT -GGTTCTCACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAAT -TTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTAC -AGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATT -CTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGG -ATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCT -GTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTT -CGTTCTATGAAGACTTTTTAGAGTATCATGACGTTCGTGTTGTTTTAGATTTCATCTAAA -CGAACAAACTAAAATGTCTGATAATGGACCCCAAAATCAGCGAAATGCACCCCGCATTAC -GTTTGGTGGACCCTCAGATTCAACTGGCAGTAACCAGAATGGAGAACGCAGTGGGGCGCG -ATCAAAACAACGTCGGCCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCT -CACTCAACATGGCAAGGAAGACCTTAAATTCCCTCGAGGACAAGGCGTTCCAATTAACAC -CAATAGCAGTCCAGATGACCAAATTGGCTACTACCGAAGAGCTACCAGACGAATTCGTGG -TGGTGACGGTAAAATGAAAGATCTCAGTCCAAGATGGTATTTCTACTACCTAGGAACTGG -GCCAGAAGCTGGACTTCCCTATGGTGCTAACAAAGACGGCATCATATGGGTTGCAACTGA -GGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGCAATCCTGCTAACAATGCTGC -AATCGTGCTACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAAGGGAG -CAGAGGCGGCAGTCAAGCCTCTTCTCGTTCCTCATCACGTAGTCGCAACAGTTCAAGAAA -TTCAACTCCAGGCAGCAGTAGGGGAACTTCTCCTGCTAGAATGGCTGGCAATGGCGGTGA -TGCTGCTCTTGCTTTGCTGCTGCTTGACAGATTGAACCAGCTTGAGAGCAAAATGTCTGG -TAAAGGCCAACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCTTCTAA -GAAGCCTCGGCAAAAACGTACTGCCACTAAAGCATACAATGTAACACAAGCTTTCGGCAG -ACGTGGTCCAGAACAAACCCAAGGAAATTTTGGGGACCAGGAACTAATCAGACAAGGAAC -TGATTACAAACATTGGCCGCAAATTGCACAATTTGCCCCCAGCGCTTCAGCGTTCTTCGG -AATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGC -CATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCA -TATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGC -TGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCC -TGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTC -AACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGC -TTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGC -ACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTA -GGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGT -ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAAT -TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAA -AAAAAAAAAAAAAAAAAAAAAAA diff --git a/sars-cov-2/varskip/vss2b/scheme.bed b/sars-cov-2/varskip/vss2b/scheme.bed deleted file mode 100644 index 001164d..0000000 --- a/sars-cov-2/varskip/vss2b/scheme.bed +++ /dev/null @@ -1,150 +0,0 @@ -MN908947.3 22 46 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"https://github.com/pha4ge/primaschema/tree/main/schemas/mainfest_schema.json", - "title": "Primer Schemes Manifest", - "description": "A Manifest of Primer Schemes", - "type": "object", - "properties": { - "schema_version": { - "description": "The schema version of this manifest. Currently 2-0-0", - "type": "string" - }, - "metadata": { - "description": "Description of the contents of the manifest", - "type": "string" - }, - "repository": { - "description": "A URI describing the location of the live, updatable version of the schema", - "type": "string" - }, - "latest_doi": { - "description": "The Digital Object Identifier of the latest version of the manifest", - "type": "string" - }, - "license": { - "description": "The license under which the manifest is released. Should be an identifier in the SPDX license list", - "type": "string" - }, - "organisms": { - "description": "A list of organisms and their names", - "type": "array", - "uniqueItems": true, - "minItems": 1, - "items": { - "type": "object", - "properties": { - "organism": { - "description": "The canonical name of the organism (lowercase, e.g. sars-cov-2)", - "type": "string" - }, - "display_name": { - "description": "The human-friendly display name of the scheme to be shown in pick lists (e.g. SARS-CoV-2)", - "type": "string" - }, - "aliases": { - "description": "Aliases for the organism name", - "type": "array", - "items": { - "type": "string" - } - } - } - } - }, - "schemes": { - "description": "The list of schemes in this manifest", - "type": "array", - "uniqueItems": true, - "minItems": 1, - "items": { - "type": "object", - "properties": { - "family": { - "description": "The name of the scheme excluding the version", - "type": "string" - }, - "aliases": { - "description": "Aliases for the scheme name", - "type": "array", - "items": { - "type": "string" - } - }, - "organism": { - "description": "The organism that this primer scheme refers to, e.g. SARS-CoV-2", - "type": "string" - }, - "organism_aliases": { - "description": "Aliases for organism name", - "type": "array", - "items": { - "type": "string" - } - }, - "versions": { - "type": "array", - "uniqueItems": true, - "minItems": 1, - "items": { - "type": "object", - "properties": { - "version": { - "type": "string" - }, - "repository": { - "description": "Link to the directory containing the scheme. This directory should follow the PHA4GE standard for schemes", - "type": "string" - } - }, - "required": [ - "version", - "repository" - ] - } - } - }, - "required": [ - "family", - "organism", - "versions" - ] - } - } - }, - "additionalProperties": false, - "required": [ - "metadata", - "repository", - "latest_doi", - "license", - "schemes" - ] -} diff --git a/schema/organisms.yml b/schema/organisms.yml deleted file mode 100644 index f16dc7b..0000000 --- a/schema/organisms.yml +++ /dev/null @@ -1,12 +0,0 @@ -- organism: sars-cov-2 - display_name: SARS-CoV-2 - aliases: - - nCoV-2019 -- organism: mpxv - display_name: MPXV - aliases: - - Monkeypox virus -- organism: niv - display_name: NiV - aliases: - - Nipah virus diff --git a/schema/primer_scheme.yml b/schema/primer_scheme.yml deleted file mode 100644 index f793e52..0000000 --- a/schema/primer_scheme.yml +++ /dev/null @@ -1,156 +0,0 @@ -id: https://github.com/pha4ge/primer-schemes/schemas/primer-scheme -name: primer-scheme -description: Data model for tiling PCR primer scheme definitions -version: 0.9.0 -prefixes: - linkml: https://w3id.org/linkml/ - schema: http://schema.org/ - ORCID: http://identifiers.org/orcid/ - GENEPIO: http://purl.obolibrary.org/obo/GENEPIO_ - IAO: "https://bioregistry.io/reference/iao:" -default_curi_maps: - - semweb_context -imports: - - linkml:types -default_range: string - -classes: - PrimerScheme: - tree_root: true - description: "A description of an amplicon primer scheme" - slots: - - schema_version - - name - - organism - - organism_aliases - - display_name - - primer_scheme_status - - aliases - - derived_from - - developers - - vendors - - amplicon_size - - notes - - citations - - primer_checksum - - reference_checksum - - repository_url - - Vendor: - class_uri: GENEPIO:0100674 - description: "Vendor of the primers described in the amplicon scheme or a kit containing these primers" - mixins: - - Organisation - attributes: - kit_name: - slot_uri: GENEPIO:0100693 - description: "Vendor specific kit name for primer kit" - - Entity: - - Person: - description: "A natural person" - is_a: Entity - slots: - - person_name - - orcid - - Organisation: - description: "An organisation" - is_a: Entity - slots: - - organisation_name - - home_page - -slots: - schema_version: - required: true - description: The version of the schema used to create this scheme definition - name: - slot_uri: GENEPIO:0001456 - required: true - identifier: true - description: The canonical name of the primer scheme (lowercase) - pattern: "^[\\da-z0-9_.-]+$" - display_name: - description: The human-friendly display name of the primer scheme - organism: - slot_uri: GENEPIO:0100682 - required: true - description: The organism against which this primer scheme is targeted. Lowercase, e.g. sars-cov-2 - organism_aliases: - description: "Aliases for the organism that this primer scheme targets" - multivalued: true - aliases: - slot_uri: GENEPIO:0100670 - description: Aliases for primer scheme name - multivalued: true - inlined_as_list: true - developers: - slot_uri: GENEPIO:0100673 - description: Persons or organisations responsible for developing the primer scheme - required: true - multivalued: true - inlined: true - inlined_as_list: true - range: Entity - any_of: - - range: Person - - range: Organisation - vendors: - description: "Vendors where one can purchase the primers described in the amplicon scheme or a kit containing these primers" - multivalued: true - inlined_as_list: true - range: Vendor - amplicon_size: - slot_uri: GENEPIO:0001449 - description: "The length (in base pairs) of an amplicon in the primer scheme" - range: integer - minimum_value: 1 - repository_url: - slot_uri: GENEPIO:0100683 - required: true - description: "Link to repository where primer scheme BED and reference files can be found" - notes: - description: "Notes about the amplicon primer scheme" - slot_uri: GENEPIO:0100672 - multivalued: true - inlined_as_list: true - range: string - primer_scheme_status: - slot_uri: GENEPIO:0100681 - description: "The status of this primer scheme (e.g. published, deprecated)" - range: PrimerSchemeStatus - ifabsent: string(PUBLISHED) - citations: - slot_uri: IAO:0000301 - description: "URLs of publications describing the scheme (DOIs preferred when available)" - multivalued: true - inlined_as_list: true - primer_checksum: - slot_uri: GENEPIO:0100675 - description: "Checksum for the primer scheme BED file, in format checksum_type:checksum, where checksum_type is lowercase name of checksum generator e.g. primaschema" - reference_checksum: - description: "Checksum for the reference FASTA file, in format checksum_type:checksum, where checksum_type is lowercase name of checksum generator e.g. primaschema" - derived_from: - slot_uri: GENEPIO:0100671 - description: "Canonical name of the primer scheme from which this scheme was derived" - person_name: - slot_uri: schema:name - required: true - description: "The name of a natural person" - orcid: - description: "ORCID ('Open Researcher and Contributor IDentifier') of a person" - organisation_name: - required: true - description: "The name of an organisation" - home_page: - description: "A link to the home page of an organisation" - -enums: - PrimerSchemeStatus: - description: "Status of this amplicon primer scheme" - permissible_values: - PUBLISHED: - DEPRECATED: - DRAFT: diff --git a/schemes/mpxv/erasmus/2500/v1.0.0/info.yml b/schemes/mpxv/erasmus/2500/v1.0.0/info.yml new file mode 100644 index 0000000..cfffcb8 --- /dev/null +++ b/schemes/mpxv/erasmus/2500/v1.0.0/info.yml @@ -0,0 +1,16 @@ +schema_version: 1.0.0a +organism: mpxv +name: erasmus +amplicon_size: 2500 +version: v1.0.0 +developers: +- Matthijs Welkers +- Marcel Jonges +- Anton van den Ouden +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v4.1 +source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v4.1.0 +citations: +- https://www.protocols.io/view/monkeypox-virus-whole-genome-sequencing-using-comb-n2bvj6155lk5 +license: CC-BY-SA-4.0 +primer_checksum: primaschema:9acd3f5ce5711ed2 +reference_checksum: primaschema:31ff1b123bbce197 diff --git a/schemes/mpxv/erasmus/2500/v1.0.0/primer.bed b/schemes/mpxv/erasmus/2500/v1.0.0/primer.bed new file mode 100644 index 0000000..9705934 --- /dev/null +++ b/schemes/mpxv/erasmus/2500/v1.0.0/primer.bed @@ -0,0 +1,176 @@ +ON563414.3 48 70 erasmus_1_LEFT_0 1 + AAAAATGTGTGACCCACGACCG +ON563414.3 2602 2624 erasmus_1_RIGHT_0 1 - CCGGGAACTTACGCTTTCAGAT +ON563414.3 2390 2412 erasmus_2_LEFT_0 2 + TGTTCTACACCCTGATGCTCCT +ON563414.3 4829 4852 erasmus_2_RIGHT_0 2 - TCCACCCACCTTTCTTGAAATGA +ON563414.3 4588 4610 erasmus_3_LEFT_0 1 + GTTAACGATGCGCACAATCTCG +ON563414.3 7025 7047 erasmus_3_RIGHT_0 1 - TAGTGAGAGCGAGAGTGACAGT +ON563414.3 6807 6829 erasmus_4_LEFT_0 2 + GTAGCAGTAGTTGGTGCATGGT +ON563414.3 9250 9275 erasmus_4_RIGHT_0 2 - TGTGTCCTCTCCTCTTATAACATCG +ON563414.3 9083 9109 erasmus_5_LEFT_0 1 + AATAGTCTGTAGACCTTTATCGTCGT +ON563414.3 11491 11514 erasmus_5_RIGHT_0 1 - ACTGCTAGAATCCGGTTCAGATG +ON563414.3 11251 11273 erasmus_6_LEFT_0 2 + AGCGTTGACTTATGGACTCTGG +ON563414.3 13804 13826 erasmus_6_RIGHT_0 2 - TACCTATCCAACGACAGGCACT +ON563414.3 13625 13647 erasmus_7_LEFT_0 1 + CACTGTAAGCATGTCCGTACCA +ON563414.3 16063 16086 erasmus_7_RIGHT_0 1 - TGAGAACGAGCTCTTCAAACACT +ON563414.3 15861 15883 erasmus_8_LEFT_0 2 + TTGCGGACATGTTACACTCCTT +ON563414.3 18289 18311 erasmus_8_RIGHT_0 2 - ACTATGGATCCCCACCACTTGA +ON563414.3 18097 18119 erasmus_9_LEFT_0 1 + AGGCTATGTTTCGCCCATCATC +ON563414.3 20586 20610 erasmus_9_RIGHT_0 1 - GTCCTTTACGATGAGCTCAAATGT +ON563414.3 20374 20396 erasmus_10_LEFT_0 2 + TCGCCGTCATTTCTCCAAAGAA +ON563414.3 22843 22865 erasmus_10_RIGHT_0 2 - TCTGTTGTTTACCACTCAGCGG +ON563414.3 22585 22607 erasmus_11_LEFT_0 1 + TGTCACTCCATAACTACCACGC +ON563414.3 25150 25174 erasmus_11_RIGHT_0 1 - AGTTTCGTCGATAGTACTGTGTGT +ON563414.3 24887 24909 erasmus_12_LEFT_0 2 + GGAACCGTTTTCGTACCGTACT +ON563414.3 27374 27396 erasmus_12_RIGHT_0 2 - AGTCAGGTCTTGAAGGCTACCA +ON563414.3 27208 27232 erasmus_13_LEFT_0 1 + TCCTTATGAAGATGATGTTTGGCG +ON563414.3 29587 29609 erasmus_13_RIGHT_0 1 - CCCTCCTGGAGAACGACAGTTA +ON563414.3 29305 29328 erasmus_14_LEFT_0 2 + TGATCCAAACCCTTGATCTCCTC +ON563414.3 31879 31901 erasmus_14_RIGHT_0 2 - ACGGATTTCAGATGGCCATTGA +ON563414.3 31661 31683 erasmus_15_LEFT_0 1 + TGGAAGCGAATGATCCGGAAAA +ON563414.3 34161 34183 erasmus_15_RIGHT_0 1 - TCCGTGGTTTCTAGTGGGTGTA +ON563414.3 33956 33978 erasmus_16_LEFT_0 2 + GGCTGCTCCTGTTCTTGTAGTC +ON563414.3 36418 36440 erasmus_16_RIGHT_0 2 - GATAACGCCAAAATCGCTGCTC +ON563414.3 36186 36210 erasmus_17_LEFT_0 1 + ACCTTGGCTGTCTCATTCAATAGG +ON563414.3 38628 38650 erasmus_17_RIGHT_0 1 - TGAATGGCTGTCGTCAAAAGGT +ON563414.3 38411 38433 erasmus_18_LEFT_0 2 + AAATTCGCGCCCACAATTCATC +ON563414.3 40934 40956 erasmus_18_RIGHT_0 2 - TCGCCGTTTCATTTTCAACAGC +ON563414.3 40740 40765 erasmus_19_LEFT_0 1 + AGGCTTCCAAAAATTTTTCATCCGT +ON563414.3 43247 43269 erasmus_19_RIGHT_0 1 - ACGTCGCTGTAATAGACAAGGC +ON563414.3 43046 43075 erasmus_20_LEFT_0 2 + AGAAATGCCAAATCTATAAGAAAAGTCCT +ON563414.3 45479 45503 erasmus_20_RIGHT_0 2 - CCTTTATCAACAAGGAAAGCGTGT +ON563414.3 45260 45282 erasmus_21_LEFT_0 1 + CCCTAGGACGAACTACTGCCAT +ON563414.3 47687 47709 erasmus_21_RIGHT_0 1 - TTGTGCTGCTCTTATCGTCTGA +ON563414.3 47509 47536 erasmus_22_LEFT_0 2 + TCGTATTGTGGTTATATGGCTACAATT +ON563414.3 50003 50025 erasmus_22_RIGHT_0 2 - TGAATTGTTGCAACGGTTTCCA +ON563414.3 49729 49754 erasmus_23_LEFT_0 1 + AAAAACCCTAGTATTCTTCCATCGC +ON563414.3 52309 52331 erasmus_23_RIGHT_0 1 - AACGGTATGTTACGGTTTGCCA +ON563414.3 52123 52146 erasmus_24_LEFT_0 2 + TCAGTCGTTCTAACTCCTTTGCT +ON563414.3 54553 54575 erasmus_24_RIGHT_0 2 - CACGCTTCTATGTTGCCGTCTA +ON563414.3 54371 54393 erasmus_25_LEFT_0 1 + CTCGCCATTTCGACATCTGGAT +ON563414.3 56825 56847 erasmus_25_RIGHT_0 1 - CGGGACCAAATGTAGTCAAGCT +ON563414.3 56557 56581 erasmus_26_LEFT_0 2 + AGACAGAATATCGTGAACAGGTGG +ON563414.3 59133 59156 erasmus_26_RIGHT_0 2 - TGTTTCGACTGGAGAATCATCCA +ON563414.3 58940 58962 erasmus_27_LEFT_0 1 + ACGCGTTCACTATCTCCAGAGA +ON563414.3 61420 61442 erasmus_27_RIGHT_0 1 - TACGCACGCTTCTCCTACCTTA +ON563414.3 61146 61168 erasmus_28_LEFT_0 2 + TAACTCCAGGCCGTTTGTTTCC +ON563414.3 63698 63722 erasmus_28_RIGHT_0 2 - TTGTGTACCAGAACTCCACCTAAA +ON563414.3 63523 63547 erasmus_29_LEFT_0 1 + TTGACTTTTTGGTCCACTTTTCCA +ON563414.3 65943 65965 erasmus_29_RIGHT_0 1 - ATATTCGTGACACTGTGCAACG +ON563414.3 65714 65736 erasmus_30_LEFT_0 2 + CTGCCACGTTAGAGGATGACAG +ON563414.3 68146 68168 erasmus_30_RIGHT_0 2 - ACTAACGTTTCTTAGCGGAGGC +ON563414.3 67967 67989 erasmus_31_LEFT_0 1 + TCCGGACATGATGGTAAAGACC +ON563414.3 70382 70404 erasmus_31_RIGHT_0 1 - AACGAATTCTGCGTCTCGTTCA +ON563414.3 70125 70149 erasmus_32_LEFT_0 2 + CAAGACGTTAGAGACAAGAGACGT +ON563414.3 72685 72707 erasmus_32_RIGHT_0 2 - CAACGCCACAGATTTCTGGAGA +ON563414.3 72417 72439 erasmus_33_LEFT_0 1 + TAGGCTCACCGATGATCATTGG +ON563414.3 75003 75025 erasmus_33_RIGHT_0 1 - AACACAGCATCCAACTGAGCAT +ON563414.3 74810 74832 erasmus_34_LEFT_0 2 + GCTATTTAAATGGGTGCCGCAG +ON563414.3 77307 77329 erasmus_34_RIGHT_0 2 - GGTGATGATCCTTGACGGAAGA +ON563414.3 77111 77133 erasmus_35_LEFT_0 1 + ACAGGGGCAATGTTTACCACAA +ON563414.3 79597 79619 erasmus_35_RIGHT_0 1 - CTAGACGCCACGGGGTTTAAAA +ON563414.3 79386 79408 erasmus_36_LEFT_0 2 + GGCCGCCATCATGATCCTATTC +ON563414.3 81853 81875 erasmus_36_RIGHT_0 2 - TTACCGCCTTCTGGATAACCTG +ON563414.3 81588 81612 erasmus_37_LEFT_0 1 + TTGTTTCGTCAACAAGTTGGATGA +ON563414.3 84064 84089 erasmus_37_RIGHT_0 1 - CGGATACCAGAGTGATAATTTCGGT +ON563414.3 83901 83923 erasmus_38_LEFT_0 2 + AGGTGGTGGAACTCCTATTGGA +ON563414.3 86316 86338 erasmus_38_RIGHT_0 2 - CACCGCTTCGAAACCATGAAAC +ON563414.3 86062 86084 erasmus_39_LEFT_0 1 + CCGCATTGGTGTTCCGATCTTA +ON563414.3 88513 88535 erasmus_39_RIGHT_0 1 - TGAACCTGAGGCATGGAAAAGG +ON563414.3 88323 88345 erasmus_40_LEFT_0 2 + TCACGTCAGCGGCATCTAAATT +ON563414.3 90775 90800 erasmus_40_RIGHT_0 2 - TTCATGTGAAACTTTGTCCTTTCCT +ON563414.3 90609 90634 erasmus_41_LEFT_0 1 + CCACAGATTCCAATTATCAGTTGGC +ON563414.3 92985 93010 erasmus_41_RIGHT_0 1 - AGACGACTCTCCAAAGATAATTGGT +ON563414.3 92702 92724 erasmus_42_LEFT_0 2 + AGCCCGTAAATGCAATCAGTGA +ON563414.3 95299 95321 erasmus_42_RIGHT_0 2 - GCCGTTAAACCAAGCGAATACA +ON563414.3 95041 95066 erasmus_43_LEFT_0 1 + TGTACAGGTACCTCCATCATTAGGA +ON563414.3 97581 97603 erasmus_43_RIGHT_0 1 - TTGGTTGTCGACTTCCCAGTTG +ON563414.3 97373 97395 erasmus_44_LEFT_0 2 + ACGTGTACTGTATCGACCGGAT +ON563414.3 99843 99865 erasmus_44_RIGHT_0 2 - ACGGGTTCAGAAATATCGACGT +ON563414.3 99679 99702 erasmus_45_LEFT_0 1 + TCCTGAAAACGATGATGGCAATC +ON563414.3 102100 102123 erasmus_45_RIGHT_0 1 - AACTCTTCGAAGTGAGGATCGAT +ON563414.3 101884 101906 erasmus_46_LEFT_0 2 + CCAAGATCAAAAGACACGCACG +ON563414.3 104341 104363 erasmus_46_RIGHT_0 2 - TTGATGATGTGGAAGGGTCTGC +ON563414.3 104156 104178 erasmus_47_LEFT_0 1 + CTCCCGGATCACGATTTTGTCT +ON563414.3 106541 106563 erasmus_47_RIGHT_0 1 - GAACATATAGCGACGCCACCAA +ON563414.3 106293 106315 erasmus_48_LEFT_0 2 + AGATGGGCCCGTTCTCTGAATA +ON563414.3 108802 108827 erasmus_48_RIGHT_0 2 - TGTAGCTGTTGTAGACATAACGGTA +ON563414.3 108580 108602 erasmus_49_LEFT_0 1 + TTGCATCTACATCATCCGTGGA +ON563414.3 111000 111022 erasmus_49_RIGHT_0 1 - AATGGAAGCCGTGGTCAATAGC +ON563414.3 110743 110765 erasmus_50_LEFT_0 2 + GCTACTTCGTCGATGGAAACCA +ON563414.3 113303 113325 erasmus_50_RIGHT_0 2 - TCCTTAAATCTGGTGCCGTTGT +ON563414.3 113103 113125 erasmus_51_LEFT_0 1 + TCTCTGTAGTCGACGCTCTCAA +ON563414.3 115547 115570 erasmus_51_RIGHT_0 1 - ACGGCCGGAAATAGTTAAGAGAC +ON563414.3 115326 115348 erasmus_52_LEFT_0 2 + AACCAAAAAGTCACACGCTCCA +ON563414.3 117752 117774 erasmus_52_RIGHT_0 2 - TTCTATGCAGGATCTCCCGAAG +ON563414.3 117543 117565 erasmus_53_LEFT_0 1 + GTTGTATGGCATTGCGCAGAAA +ON563414.3 120022 120044 erasmus_53_RIGHT_0 1 - CAAGGATGGTGTTTGTGTTGGC +ON563414.3 119757 119779 erasmus_54_LEFT_0 2 + GAGAACATAATGCCGCCGTAGT +ON563414.3 122339 122361 erasmus_54_RIGHT_0 2 - TGACGTACATCCAGGAGAACCT +ON563414.3 122157 122179 erasmus_55_LEFT_0 1 + CTGACAATGTACTGGGCCATGT +ON563414.3 124629 124654 erasmus_55_RIGHT_0 1 - ACATCATCGGAGGATAATACGCTAA +ON563414.3 124346 124368 erasmus_56_LEFT_0 2 + CACACACGGCAGAAAAACCATC +ON563414.3 126828 126850 erasmus_56_RIGHT_0 2 - GTTCCGTTCCCATCATAGTCGT +ON563414.3 126605 126627 erasmus_57_LEFT_0 1 + TTGGGAGAACTTAAGCGGCAAG +ON563414.3 129095 129117 erasmus_57_RIGHT_0 1 - AAACGATAAGAGTGGCCGCTTG +ON563414.3 128899 128922 erasmus_58_LEFT_0 2 + GAAACGGAATCGGTAGATCGTCT +ON563414.3 131375 131397 erasmus_58_RIGHT_0 2 - CATAGCGTCTCCGGATTCCAAG +ON563414.3 131133 131155 erasmus_59_LEFT_0 1 + AAGATTGCGGCTAATTGCTTCG +ON563414.3 133667 133689 erasmus_59_RIGHT_0 1 - GAGGGAATTGACTCGCGAAAGA +ON563414.3 133459 133481 erasmus_60_LEFT_0 2 + ACTCGACGAGCTCACGTTTAAG +ON563414.3 135878 135900 erasmus_60_RIGHT_0 2 - GTTCGACGATTAACGGAGAGCA +ON563414.3 135639 135661 erasmus_61_LEFT_0 1 + ACAGAACAATTAGAGCGGCAGG +ON563414.3 138158 138182 erasmus_61_RIGHT_0 1 - ACACGATGCGACAATGTATAGACT +ON563414.3 137959 137981 erasmus_62_LEFT_0 2 + GCTTCGCGTTTAGTCTCTGGAT +ON563414.3 140456 140478 erasmus_62_RIGHT_0 2 - TCGATGCCTGTAAAGGGGAAAC +ON563414.3 140200 140228 erasmus_63_LEFT_0 1 + GACGATGATGATTGATCACTATTACACA +ON563414.3 142681 142703 erasmus_63_RIGHT_0 1 - AATCCATCCATTGCCGTCTGAT +ON563414.3 142478 142500 erasmus_64_LEFT_0 2 + ACCATCATCATAGCATGCGACT +ON563414.3 144918 144940 erasmus_64_RIGHT_0 2 - GTGTTTGGTTGCGTTATTGCCA +ON563414.3 144705 144727 erasmus_65_LEFT_0 1 + TCAATCCCAAACCCAAAACCGT +ON563414.3 147236 147258 erasmus_65_RIGHT_0 1 - CCCAGTAAGCAACTCCATAGCA +ON563414.3 147038 147060 erasmus_66_LEFT_0 2 + TAATAAGTTCGAGGATGCCGCC +ON563414.3 149497 149520 erasmus_66_RIGHT_0 2 - TTTTCCATGGACTTGTTCAACGT +ON563414.3 149268 149292 erasmus_67_LEFT_0 1 + ACTTTCGAGGTTATTGGTTGTGGA +ON563414.3 151784 151806 erasmus_67_RIGHT_0 1 - GCATACGCTACTCCAGAGAACG +ON563414.3 151501 151523 erasmus_68_LEFT_0 2 + ATGTCTCGTGGGGCATTAATCG +ON563414.3 153997 154019 erasmus_68_RIGHT_0 2 - ACCGGATTCATCGTCGTAACAA +ON563414.3 153796 153823 erasmus_69_LEFT_0 1 + TGATGCACTAACGAGAAAATTAGAAGG +ON563414.3 156278 156305 erasmus_69_RIGHT_0 1 - ACTTAAACCACCATCAAAAATCCATGT +ON563414.3 156003 156031 erasmus_70_LEFT_0 2 + AGACTAGTGTATGTGGAAATGTCATAGA +ON563414.3 158540 158567 erasmus_70_RIGHT_0 2 - TCGGATTATAGCTAAGGACTAGATTCG +ON563414.3 158363 158385 erasmus_71_LEFT_0 1 + GGTGGAGTCGTTAAAGGTGACA +ON563414.3 160847 160869 erasmus_71_RIGHT_0 1 - TGCCTTGCATGTGATAAGACCT +ON563414.3 160648 160672 erasmus_72_LEFT_0 2 + GCAAAAATCAATGGGTCGTTGGAC +ON563414.3 163064 163086 erasmus_72_RIGHT_0 2 - GTGACACCCATTCATCTGGAGA +ON563414.3 162800 162822 erasmus_73_LEFT_0 1 + ATTGGATTCACGGTGGGTCATG +ON563414.3 165277 165299 erasmus_73_RIGHT_0 1 - TCACAGACAGCATTTGGATCCA +ON563414.3 165064 165086 erasmus_74_LEFT_0 2 + TCCTTTTAGTGCTCGACAGTGT +ON563414.3 167473 167495 erasmus_74_RIGHT_0 2 - ACATTGTTTGCCACGTCTTGAT +ON563414.3 167220 167242 erasmus_75_LEFT_0 1 + ATTCGATCGTCATGGGCATAGT +ON563414.3 169693 169722 erasmus_75_RIGHT_0 1 - TGTATCTGAATCCATGTTAGTAGTAAGCA +ON563414.3 169497 169524 erasmus_76_LEFT_0 2 + TCTTCCGATATCTACAAGGATATTCCA +ON563414.3 171919 171941 erasmus_76_RIGHT_0 2 - ACGGATGATCTGCACAGAACTC +ON563414.3 171744 171767 erasmus_77_LEFT_0 1 + GTTGGGACTGACAGATGTGTTCT +ON563414.3 174051 174073 erasmus_77_RIGHT_0 1 - TGTATCGCATTCCACCCTTTCC +ON563414.3 173860 173884 erasmus_78_LEFT_0 2 + CTCATGTTCTTGTGTAATCGCAGT +ON563414.3 176270 176293 erasmus_78_RIGHT_0 2 - TGTTCTGCGTCATCTACATCTGA +ON563414.3 176075 176099 erasmus_79_LEFT_0 1 + GATAGATCAGTGGGTGTCCATGAT +ON563414.3 178532 178554 erasmus_79_RIGHT_0 1 - GTGTTGGGTACGACCGCTTATA +ON563414.3 178279 178303 erasmus_80_LEFT_0 2 + AGCGAGAGATCTAGCAACTAGAGT +ON563414.3 180885 180907 erasmus_80_RIGHT_0 2 - TCGAGTCATTTTACGCACGGTT +ON563414.3 180719 180741 erasmus_81_LEFT_0 1 + CACCTGATGGTCTGGACATACC +ON563414.3 183172 183194 erasmus_81_RIGHT_0 1 - ACTACGTCCTTTTGCCATTGCA +ON563414.3 182929 182951 erasmus_82_LEFT_0 2 + GCTCAATCTGCCAGGATCAAGT +ON563414.3 185438 185460 erasmus_82_RIGHT_0 2 - TCAATGGAGCAGGAAAATGGGT +ON563414.3 185247 185269 erasmus_83_LEFT_0 1 + CCACATTGGCTAGAGGAATGCC +ON563414.3 187651 187673 erasmus_83_RIGHT_0 1 - TGATAAGCGACGCCATTCATGT +ON563414.3 187465 187487 erasmus_84_LEFT_0 2 + GACCTCACAACACAGTGCAAGA +ON563414.3 189901 189926 erasmus_84_RIGHT_0 2 - CCAGCTAACATAAGAGCCAATCTCA +ON563414.3 189634 189660 erasmus_85_LEFT_0 1 + ACTAAATCTCCTTCATGCTCTCTCAC +ON563414.3 192197 192219 erasmus_85_RIGHT_0 1 - ACCTGCTCGGTTACTTCTGTGT +ON563414.3 191933 191959 erasmus_86_LEFT_0 2 + AAAACCATGATGTGATAAAGCTCTGT +ON563414.3 194505 194526 erasmus_86_RIGHT_0 2 - CCATTGGATGGTGCATGTGGT +ON563414.3 194280 194302 erasmus_87_LEFT_0 1 + CCAAGCTAAGCGACTACCATCT +ON563414.3 196724 196749 erasmus_87_RIGHT_0 1 - TGATGCAATTGTCTGACAACCTAGA +ON563414.3 194581 194603 erasmus_88_LEFT_0 2 + CCGGGAACTTACGCTTTCAGAT +ON563414.3 197135 197157 erasmus_88_RIGHT_0 2 - AAAAATGTGTGACCCACGACCG diff --git a/schemes/mpxv/erasmus/2500/v1.0.0/primer.svg b/schemes/mpxv/erasmus/2500/v1.0.0/primer.svg new file mode 100644 index 0000000..353408c --- /dev/null +++ b/schemes/mpxv/erasmus/2500/v1.0.0/primer.svg @@ -0,0 +1 @@ +12pool010,00020,00030,00040,00050,00060,00070,00080,00090,000100,000110,000120,000130,000140,000150,000160,000170,000180,000190,000200,000ON563414.3+-strand \ No newline at end of file diff --git a/schemes/mpxv/erasmus/2500/v1.0.0/reference.fasta b/schemes/mpxv/erasmus/2500/v1.0.0/reference.fasta new file mode 100644 index 0000000..3764866 --- /dev/null +++ b/schemes/mpxv/erasmus/2500/v1.0.0/reference.fasta @@ -0,0 +1,2820 @@ +>ON563414.3 +TTTTAGTACATTAATATTATATTTTACTATTTTATTTAGTGTCTAGAAAAAAATGTGTGACCCACGACCG +TAGGAAACTCTAGAGGGTAAGAAAAATCAATCGTTTATAGAGACCATCAGAAAGAGGTTTAATATTTTTG +TGAGACCTATCGAAGAGAGAAAGGATAAAAACTTTTTACGACTCCATCAGAAAGAGGTTTAATATTTTTG +TGAGACCCATCGAAGAGAGAAAGAGATGGTTAGTCAAGATATTTTTCTTAGTACAAAAGTCAATGTTTTA +AAATATATGGACGAGAATTAATTTGTCTGTATAAAAACTTGTGTGAAATTATGTACTAGAGAAAAAACGT +GAGCAGTGTCCCCTACATGGATTTTACAGATCATTTATATTCCAAAAATATTAACTATATACGTTTATTA +TATGATGTTAACGTGTAAATTATAAACATTATTTTATGATGCAATTGTCTGACAACCTAGATTGGTATAA +GGATGTTGATAAGCTCTACGAGAATATATTGTTGGACGTTATCGTTTACGAAATAGTTGAGACATCAGAA +AGAGGTTTAATATTTTTGTGAGACCATCGAAGAGAGAAAGAGAATAAAAATATTTTTTTTTTTTTTGTAA +AACTTTTTTATGAGACCAAGAGAATACGAATAGTGATCATATCGTATCACATATTGAAACAGAAAGAAGA +AGTAACGAGAGGTAACTTTTTGTGAATGTAGTTAAATATTTTTGTTTTGCAAACCGGAATATAGTGCCCG +GTCTTTTTTAATTCGTGGTGCGGTGTCTGAATCGTTCGATTAACCCAACTCATCCATTTTCAGATGAATA +GAGTTATCGATTCAGACACATGCTTTGAGTTTTGTTGAATCGATGAGTGAAGTATCATCGGTTGCACCTT +CAGATGCCGATCCGTCGACATACTTGAATCCATCCTTGACTTCAAGTTCAGATGATTCCTCACACATGTC +TCCGATACGTACGCTAAACTCTAGGTTCTTGACACATTTTGTATCAACGATCGTTGAACCGATGATATCT +TTGTAACTCACTTTCTTATGTGAGATGTTAGACCCAAGTACTGGATGGGTCTTGATGTCACTGTCTTTCT +CTTCTTCGCTACATCTGATGTCGATAGACATCTCACAGTCTTTGATCATAGCCAGAGCTTCTTCACGCGT +GATCGCGGGAGAGTCCTTACCTTGTCCCGGTGACACGCTGGACAATCTAGTATTCACAGTGTTTCCATCA +GAGGATTCGGAGATGGATAAAATCTTTGGGCATTTGGTGAATCCAAAGTTCATGTTAAGACCCGCACCGA +CGATAGTGTAATAAGTGGTGGGATCTCCTTTTACAACTTCTTCGGATACCTCATCATCTTCGGTCTCTGT +AACTTCCGTTACGGATTGACAAATCTTATCATTGGTCGGTGTTTGGTCTTGCTTTGTGACTTTGATAATA +ACATCGATTCCCATATGATGTTTGTTTTCTTCTTCAGTACACGAGGATGAAGATTGTTGAAGACTAGTAG +GCATAGCAGCTGCCACTAGGCACATGCATGCCAGGACAATATATTGTTTCATGATTGCTATTGATTGATT +ACTGTTCTAGATGATTCTACTTTCTTACCATATAATAAATTAGAATATATTTTCTACTTTTACGAGAAAT +TAATTATTGTATTTATTATTTATAGGTAAAAAAACTTACTATAAGTGGGTGGGATTCTGGGAATTAGTGA +TCAGTTTATGTATATCGCAACTAGCGGGCATATGGCTATTGACATCGAGAACATTACCCATATGATAAGA +GATTGTATCATTTTCGTAGTCTTGAGTATTGGTATTACTATATAGTATGTAGATGTCGACGCTAGATAGA +CAGTCGCCCACTAGAGTTACCGTCTCTGAATGCGGCATGATAGTATCATTCTTTGTTTTCGTTAACTGTT +TGGAAGATGAATCTTTGTTGTTACATTTAATCTCGAAATTCAGAGTACATATCTTTGAAGTATTCTGATA +TCTATTTTCTCCTGTAAAGAATCCTGAAGTTGCTACATTATTAAGGACAGAGAAGTATTCTGCACGAAAG +ACTGGATCACAATCTTTATGATTCATGGTAATAGTTAGTTCCGACGTTGAGATGGATTCGCTGAGACCGG +TAGTGGTCGTCCGAGTACACGATGTGTCGTTGACTGGATACAGGTTAATTTCCACATCGATATAGTTAAA +TGTATTGCTGGTTACGACGGGTTCGCATTTATCTGTGGAAGAGACGGTGTGAGAATATGTTCCGGGACCA +CACGGAGAACAGATGACGTCTCCGGTAGACGTGTATCCGGATACTCCGTATCCTATTCCACACTTTGTTT +TAGAAATACATGTTCTACACCCTGATGCTCCTTTGAGAAGACAATAATATCCTGGAGAGCATTCACAGAT +TCTATTGTGAGTCGTGTTACACGATCGCGTCTCTACCTGATTACTATCACATCTTCCGTTACAACTTAGA +CAAGCCTGTAAATGATTATTGTGAGATGTAAAGGTATCCGAACCACACGGTGTACATTGTGTATTAGTCT +TGCTATCACATAATCTGAAAGCGTAAGTTCCCGGAGGACACGATAGACAACATAGATTACGGCTTCTGTA +TTCGTTGTCTTTACACTTTCCATTGGATGGTGCATGTGGTGCTATATCTCTTCCGTTTATTATTATACAT +GAGAGAAACAATATATACGAGTATAATACGGACCTCATGATTTAATAATGTAGTAATCGTCGTCTTGTTA +CTGTTTGTTTCCTACTTCTCCAATCATATAGATTATTTTTTAAATATTTTCTTTCTATCATGGATAATAT +TTGTAATGGTTCTTTCCGTACAACATACTGTTTAGATGGTAGTCGCTTAGCTTGGTTATGATATTGCGCA +TAATTTCCGGAGGCAAATACGATAGTCTAGATTGACTATCGATGGTAGACTCTAATTTATTGAGTGCTTT +GTCGACGAGTTTACTTTTATGCTCCATCGATAGATGACACTGTTCTATGAGATCGTCGTACATGGGAAAT +GAAATGCGTTTGTCTGAATGTATGGCTTCGAGATATGTGTGATACCGAATGTCTTCTGTTCTCAATACCG +TATACAAGTCGGTGTCTGAGATTCGAATCTCTTTGAGGAGACTTATGTCACGACTACATTTTTCGATGAT +GGAATCTATCTTATCGAATGATATATTTTTCATAAATACACTTTTATAGTCCTCGTTTAAACAGAATTTA +GTATGTAGTTCCGCAAATGACTCGTCCCTTAATAGGCAGTAGGCTATTATCTTCTTTACGTAGTGATCGT +CGTAGGGAGAGAACTCCGACATCTTGTAGAACAACGATTTAATCATAGGTAGAGATACTTTCAGTCTGTG +GTGGATAATGTCATTAACGACATCCGCCTTGTATATAATGTTTCTGTTTTCAAACACCAAGTCGAATACT +GTCTTATCGTCTTTAGTCGGAAGGTTGATGTCGTATCCAATGTATACGAGGTATGAGGCAACATTGTTAT +TGCAATTCTGGAAGGCGGTATGAAGAGGAGTCATTGTATTATAGTATTCGTCTTTCTGAATGTCGAATCT +ATCTAGTAGATACCGTAGTATATTGAGAGAGCGACTTCCATATCCTTGATTATGTTTTATGAATAGATAA +AGTAGATGTTGTCCTTCTTCCTTTTGTAATTTCCCGTATTTTTGTTCGTGCCAATTGAGTAACATTATGA +GAATATGACCTGTTGCACAATCGTTCTTTATGTATTCCATGATGGGTGTACAATTAAGATTATTACGTAT +CCTCGTATCGGCTCCTCGAGATAAAAGAGCATACACCACACGAGGACTATGTTTGGTATACTGTTGAAGG +TAAGTGTGTAACGGCGTATTTCCGATTTTCGTAACCGCGTTAATGTTTGCTCCATGATCTATTATCGCGT +AGATGAATCGCTTCTCAGCTCGCATCTTAGTGTGACTCTTTGACTTGTAATAATTGCTTTCGTGGAACGC +GGATATGTGTTTACAGTAGTAATGAAGAGAAGTGAGTCCATCCTCATCGACGCAATTAGGGTCAGATCCT +TTAGTCAATAATTTGTACAGAACGTAATAGTTTAAGCTCCCATTGAATTTATATCTAAGATAACACAGCA +ATAGATCGGATGATTTACTAAAGTCATCAATGGGGTCCGTTAGTATATCAAAGATCTTGTTATCGATTGA +TAGTGAATGAATCAGATAGTGGTGTAGAGGAATATGTCCTTTTTTATCCTTGCTATCAAAGTTACGCATG +CCGTGGCGTAACAATATCTTTAATACAGATGGATTAAATCGTGTATTCATCGTATAGCAATGTAATGGAG +AGTTACCACATTTTAGTCGTTTATTCAGATCGCAGTGTTTAATAACTAATTTAAACAGATGAGATGATAT +ATCCACATCAAAGAATGCGAGATACATATGACAGACATTATTGACAGAAATGTGACCTTCATTATCACCG +TCGTCCATAAATGCGTTAGGTACGTACCACATACTATCGTTAACGATGCGCACAATCTCGTCCATTTCAT +CCATCTTCATAATGATTTACTTTTTCATAATTAGAGAAAAAGATCAAGGTATAAAAATTAGAAGTGTTAG +ACTATAAACTAACTTATGACTTAACTAACTTATGACTTAACTAACTTATGACTTAACTAACTTATGACTT +AACTAACTTATGACTTAACTAACTTATGACTTAACTAACTTATGACTTAACTAACTTATGACTATTAACT +CATTTCAAGAAAGGTGGGTGGATAGAACTCTATATGACAGCTTGTGAAACAATTAGATCCCTAATTTCTA +ATGGAAGTTTTGATAGGAGATTGTCATCAGTTGATACATTGTTTATTATCTCATCTATTAGAGCACGTCT +GTTTAGAGCTTTAGTGACCTGCTCGGTTACTTCTGTGTAAATCTTGAATCCTTTAGTGATACACTGTGTC +AAAACTGGATGTTTAGAATACCTATGTAGAATATGGGAAGCATGCTTGTTTTTGTCTCTATTATAGATTA +ACTCATACATGGTTGTATTATGAATTTTCATCTGCCTAATGTACTCCAATTCTTGTTTACAATCAATTAT +ATAATCAAAGAGTGATGATGCATACACATTACAAAGTGAATAATCTACCATCATAAAATACTTGATACAG +AGCTTTATCACATCATGGTTTTCAATTGTATTATTAAGTATAGCTAATTTTATACAGTCAATAGACAATG +GTTCTCTAAGCAATATTTCTAATATTTTAAGATGTGCTTCCCTACGGGCGATGACAGATCCCCTATCCAC +GGCCACGTCAAGACATGTATATCCATTACTCATTACTGCGTTGACATTTGCTCCATTTTCTAATAGCCAT +GATACTAAATCTATATAACCTGCATAGATAGCGCGATAAAGCAAGGTCCTTCCACCAGCATCTAGTTGAT +TGATATCTTCAATATATGGGATACAAAGCTTATAAATTTCTAATACTGTGGGTTCATCTACAAGGAATCC +CCTAGTATACTGAATTATTTTATATAGATCTAATTTAACATCATTTTCATCTGGGATACCACAATTCAAA +ATAAACTCAACAACACTACTTTCCTTTTTACATATTCCCCTAAAATAGGCATTCAAGCATTCTATTTTAT +ATATTACAGCCCCATGATCTACCATAAGATCAACAATGTCTATTTCTACATATGCATTAGATAGATAGTA +AAGTAAGAGATCTTGCACAGAATTACAATTCTTAATAATTATAGAGAAAATATCTTCCATATAATTCTTT +GACACTAATGCAGATATAATATCTTTATATGTAATATATGCAAACAGTCTATCTACTATATACTGATCAA +TATTATCTCTATGAATCCTAAAATAATCATACAGAACATCTACAGGATCACAAATTGGTTCAAGGAGAAA +TCTATCAAATATTTTCCTGTCAACAACTGGTTCTAGAACATAACAGTCAACACCTAATCCATGTTTTTTA +TAATCATCTACCAAAGATAATGACCAAAGATCGAGGTCGTCGTGAAACTGCTCATCGACAGCCATGAAAT +CTACCGACTCCATGGTGCGAATCGCACTGTCTTATTCGCCATTGATTTTCATTTTTTATAATTATGTACA +TGTTTTCCTTCTATTCTCAAGAGTCTACAAAAATATATTTTTTCGATATCTAAGTACTAAGTTTTTTTAC +TGTTTTTGTTACTGTCTTCCATTCTTCTAACTAAAGATCTGAGATAAATTATACAATCTTCGCTATCGAA +CCATTTTTGTAGTCTAAAGCCTGAAGTAATTAACCAACTGTTTTTATTAGTGGCTTTTTTCGATCTATCC +TCGTCCTCTCATCATCCTTATATTATTATCATTATTATCATAGTCTATTAAACACAAATCATCTACGTTT +ATAACAACATTCTCATTATTAATTAGTTCTGTAGAATATCTTTAATAATTTGGCTATACATCTGTTCAAT +ACTATCTATTGATGATTTCTTTTTTAAGACTTAAACTAGTTATGGTAATGACGATGAAATCGAGTAGTAA +CTTCTAATAAAGACTTGATATCATTATCATATGTTTGATCGTCATAGTTAATAGTGTGGCTAAATGGTAC +TGTTAATAAGTTTATAGACAATATCATAGTATTTTCTTTCCAGAATTAGATTATTTTTTTAAATACTGAT +CCTCACAATTCCGTGATGTAGCAGTAGTTGGTGCATGGTCTATATCGTTAAAATGTATCATATATAATAG +TTTTCTGACGTGGAGTACAGAATTTTCGATTAATGAGTTCATGGTAAGGAAGGGCAAATGCCTGTATATA +ATATACATAAGTTAATAGTTTTTTATCATATTTTCTAATACCATAATAAAAATTATCATTATTGCGTTTG +GTAGTTCTGCCCTATCATCTATATCACTGTCACTCTCGCTCTCACTATATCTTCTAAAATTACAAACAAC +TGGATATTCGATAACAGCATTTGTGTAGTTTTTGTCTTTTACAGTATATACGTTATTGTCAAAATCTAAA +CAAATATTAGCATAATACATCTATCTATAAGATCAGGATCCATGTTCGAGCATACTAGCCATGTATATTT +GTAACTTCGTCGTACAGCGTTAGATCAATAGAATAAACAATCGTGTGACGCAACTTTTTTACGATCTAGT +TGTATGAGTTTATCGTTTACATAAGCAATTAACGGCTTTAACAGATGATCTGAGTAATAATATACCTCTG +TTATACGTTTAATGTTCACGGTCTTAGTATTTTTAGATATCAATTGTGATTTACACCATATTCGACTCCC +TTGTGTGTAACGTTAGAAATTCTAAATCTATATTATCTATTACAGCGTAAAACACATTCAATATTGTATT +GTTATTTTTATATTATTTACACAATTAACAATGTATTATTAGTTTATATTACTGAATTAATAATATAAAA +TTCCCAATCTTGTCATAAACACAAAATCCATTAAAAATGTCGATAAAATATCTGATGTTGTTGTTCGCTG +CTATGATAATCAGATCATTAGCCGATAGTGGTAATGCTATCGAAACAACATCGCCAGAAATTACAAACGC +TACAACAGATATTCCAGCTATCAGATTATGTGGTCCAGAGGGAGATGGATATTGTTTACACGGTGACTGT +ATCCACGCTAGAGATATTGACGGTATGTATTGTAGATGCTCTCATGGTTATACAGGTATTAGATGTCAGC +ATGTAGTATTAGTAGACTATCAACGTTCAGGAAAACCAGACACTACAACATCATATATCCCATCTCTAGG +TATTGTGCTTGTATTAGTAGGCATTATTATTACGTGTTGTCTATTATCTGTTTATATGTTCACTCGAAGA +ACTAAACTACCTATACAAGATATGGTTGTGTTATATTTTTTATAAAATTTTTTTATGAGTATTTTTACAA +AAATGTATATGTATAAAAAAAATACTAAGTATACGATGTATCCTGTATTATTTGTATTTATCTAAACAAT +ACTTCTGCCTCTAGATGGGATACAAAAATTTTTTATTTCAGCATATTAAAGTAAAATCTAGTTACCTTGA +AAATGAATACAGTGGGTGGTTCCGTATCACCAGTAAGAACATAATAGTCGAATACAGTATCCGATTGAGA +TTTTGCATACAATACTAGTCTAGAAAGAAATTTGTAATCATCCTCTGTGACAGGAGTCCATATATCTGTA +TCATCGTCTAGTTTTTATCAGTGTCCTATGCTATATTCCTGTTATCATCATTAGTTAATGAAAATAACTC +TCGTGCTTCAGAAAAGTCAAATATTGTATCCATACATATATCTCCAAAACTATCACTTATACGTTTATCT +TTAACGAACATATACCTAGATGGTTATTTACTAACAGACATTTTTTCAAGATCTATTGACAATAACTCCT +ATAGTTTCCACATCAACCAAGTAATGATCATCTATTGTTATATAACAATAACATAACTCTTTTCCATTTT +TATCAGTATCTATATCAACGTCGTTGTAGTGAATAGTAGTCATTGATCTATTATATGAAACGGATATGTC +TAGTTAATATTTTCTTTGATTTAAAGTCTATAGTCTTTACAAACATAATATCCTTATCCGACTTTATATT +TCCTGTAGGGTGGCATAATTTTATTCTGCCTCCACAATCAGTGTTTCCAAATATATTACTAGACAATATT +CCATATAGTTATTAGTTAAGGGACCCAATTAGAACACGTACGCGCTTATTCATCATTTGGATCGTATTTC +ATAAAAGTTATTATGTTATAGATGTCAACACATTCTACATTTTTTTAATTGTCTATATAGTATTTTTCTG +ATATTTTCTATAATATCAGAATTGTCTTCCATAGGAAGTTGTATACTATTCGGAATCAGTTACATGTTTA +AATAATTCTCTGATGTCATTCCTTATACAATCAAATTCATTATTAAACAGTTTAATAGTCTGTAGACCTT +TATCGTCGTACATATCCATTGTCTTATTAGTTACGCTTATTTTTATGGGTTTTACGTTGCTTTATTATAT +TTTATAATAATGATTGTTTGACAATGTCGTAGTATAGATATATTATTAGAGGAGGTATAATTATAAAAAG +TTTCTGAGTACGATGTTATAAGAGGAGAGGACACATTAACATCATACATCAATTAACTACATTCTTATAA +CATTGTAATCAAAAGAATTGCAATTTTGATGTATAACAACTGTCAATGGAATTGTATATTACAAATTACG +GTATGTTGTAACAACAAATACCGATCGGTAATTGTCTCTGCCGCTGTAATAGAATTAATTATATATCTAT +TACACCGGCCTTGTATCATAATAAAGTTGTGGTAGTATGATCTCCATATTTATAATTTAGTACTTTGTAT +TTAGTTTTTTTGGAATCATAAAAAAAGTTTTACTAATTTAAAATTTAAAAAGTATTTACATTTTTCACTG +TTTAGTCGCGGATATGGAATTCGATCCTGTCAAAATCAATACATCATCTATAGATCATGTAACAATATTA +CAATACATAGATGAACCAAATGATATAAGACTAACAGTATGCATTATCCGAAATGTTAATAACATTACAT +ATTATATCAATATCACAAAAATAAATCCACATTTGGCTAATCGATTTCGGGCTTGGAAAAAACGTATCGC +CGGAAGGGACTATATGACTAACTTATCTAGAGATACAGGAATACAACAATCAAAACTTACTGAAACTATA +CGTAACTGTCAAAAAAATAAAAACATATATGGTCTATATATACACTACAATTTAGTTATTAATGTGGTTA +TTGATTGGATAACCGATGTGATTGTTCAATCAATATTAAGAGGGTTGGTAAATTGGTACATAGCTAATAA +TACATATACTCCAAATACACCCAATAATACTACAACCATTTCTGAGTTGGATATCATCAAAATACTGGAT +AAATACGAGGACATGTATAGAGTAAGTAAAGAAAAAGAATGTGGAATTTGCTATGAAGTTGTTTACTCAA +AACGATTAGAAAACGATAGATACTTTGGTTTATTGGATTCGTGTAATCATATATTTTGCATAACATGTAT +CAATATATGGCATAGAACACGAAGAGAAACCGGTGCGTCAGATAATTGTCCTATATGCCGTACACGTTTT +AAAAAAATAACAATGAGCAAGTTCTATAAGCTAGTTAACTAATAAATAAAAAGTTTAATTATCGACGATA +TATGTCGTTATTTTTCTCTCATATGAAAGATTAATTTGATTCTAATATAATCTTCAGTATTGGATGAATC +TCAATTCAAATTAATTCCATTAGATTAGATTAGATTAGATCATAAATAAAAATAGTAGCACGCACTACTT +CAGCCAAATATTCTTTTTTGAAACGCCATCTAGCGTAATGAGAACACAAGTGAACCTATAATGAGCAAAT +TTATTAGTATCGGTTACATGAAGGACTTTACGTAGAGTGGTGATTCCTCCATCTGTGGTACGAACGGTTT +CATCTTCTTTGATGCCACCACCCAGATGTTCTATAAACTTGGTATCCTCGTCCGATTTCATATCATTTGC +CAACCAATACATATAGCTAAACCCAGGCATACGTTCCACACATCCGGAACAATGAAATTCTCCAGAAGAT +GTTACAATGGCTAGATTTGGACATTTGGTTTCAACCGCGTTAACATATGAGTGAACACACCCATACATGA +AAGCGATGAGAAATAGGATTCTCATCTTGCCAAAATATCACTATAAAAAATTTATTTATCAATTTTAAAG +GTATAAAAAAATACTTATTGTTGCTCGAATATTTTGTATTTGATGGTATACGGAAGATTAGAAATGTAGG +TATTATCATCAACTGATTTTATGATGGTTTTATGAATTTTATTATGCTTCACTATTGCATCGGAAATAAT +ATCATATGCTTCCACGTATATTTTATTTTGTTTTGACTCATAATACGCACGTAATTCTGGATTATTGGCA +TATCGATGAATAATTTTAGCTCCATGCTCAGTAAATATTAATGAGAACATAGTGTTGCCTCCTACCATTA +TTTTTTTCATCTCATTCAATTCTTGATTGCAGAGATCTATATAATCATTATAGCGTTGACTTATGGACTC +TGGAATCTTAGACGATGTACAGTCATCTATAATCATGGTATATTTAATACATTGTTTTATAGCATAGGCA +TTATCTACGATATTAGATACTTCACTCAATGAATCAATCACACAATCTAATGTAGGTTTATGACATAATA +GCATTTTCAGCAGTTCAATGTTTCTAGATTCGTTGATGGCAATGGTTATACATGTATATCCGTTATTTGA +TCTAATGTTGACATCTGAACCGGATTCTAGCAGTAAAGATACTAGAGATTGTTTATTATATCTAACAGCC +TTGTGAAGAAGTGTTTCTCCTCGTTTGTCAATCATGTTAATGTCTTTAAGATAAGGTAGACAAATGTTTA +TAGTACTAAGAATTGGGCAAACATAAGACATGTCACAAAGACCCTTTTTGTATGTATAAGTGTAGAAATT +ATAACATCCATAGTTGGATTCACATAGGTGTCCAATCGGGATCTCTCCATCATCGAGATGATTGACGGCA +TCTCCCCCTTCCTTTTTTAGTAGATATTTCATCGTGTAAGAATCAATATTAATATTTCTAAAGTATCTGT +GTATAGCCTCTTTATTTACCACAGCTCCATATTCCAACATGCATTCCACTAGAGGGATATCGATATCGCC +GAATGTCATATACTCAATTAGTATATGTTGGAGGACATCCGAGTTCATTGTTTTCAATATCAAAGAGATG +GTTTCCTTATCATTTCTCCATAGTGGTACAATACTACACATTATTCCGTACGGCTTTCCATTCTCCAAAA +ACAATTTTACCAAATCTAAATCTACATCTTTATTGTATCTATAATCACTATTTAGATAATCAGCCATAAT +TCCTCGAGTGCAACATGTTAGATCGTCTATATATGAATAAGCCGTGTTATCTATTCCTTTCATTAACAAT +TTAACGATGTCTATATCTATATGAGATGACTTAATATAATATTGAAGAGCTGTACAATAGTTTTTATCTA +TAGAAGACGGCTTGATTCCGTGATTAATTAGACATTTAACAACTTCCGGACGCACATATGCTCTCGTATC +CGACTCTGAATACAGATGAGCGATGATATACAGATGCAATACGGTACCACAATTTCGTGGTTGATAATCA +TCATACACGTATCCGTACTCGTCATCCTCATAAAGAACACTGCATCCATTTTCTATGAACAAATCAATAA +TTTCAGGAACAGGATCATCTGTCATTACATAATTTTCTATAACTGAACGATGGTTTTCACATTTAACACT +CAAGTCAAATCCATGTTCTACCAACACCTTTATCAAGTCAACGTCTACATTTTTTGATTTCATATAGCTG +AATATATTAAAGTCATTTATGTTGCTATATCCAGTAGCTTCTAGTAGAGCCATCGCTATATCCTTATTGA +CTTTAACATGTCTACTATTTGTGTATTCTTCTATTGGGGTAAACTGTCTCCAATTTTTATGTAATGGATT +AGTGCCACTATCTAGTAGTAGTTTGACGACCTCAACATTATTACAATGCTCATTGAAAAGGTATGCGTGT +AAAGCATTATTCTTGAATTGGTTCCTGGTATCATTAGGATCTCTGTCTCTCAACATCTGTTTAAGTTCAT +CGAGAACCACCTCCTCATTTTCCAGATAGTCAAACATTTTGACTGAATAGAAGTGAATGAGCTACTGTGA +ACTCTATACACCCGCACAACTAATGTCATTAAATATCATTTTTGAATGTATTTATACCATGTCAAAAACT +TGTACAATTATTAATAAAAATAATTAGTGTTTAAATTTTACCAGTTCCAGATTTTACACCTCCGTTAACA +CCTCCATTAACCCCACTTTTTACACCACTGGACGATCCTCCTCCCCACATTCCACTGCCACTAGATGTAT +AAGTTTTAGATCCTTTATTACTACCATCATGTCCATGGATAAAGACACTCCACATGCCGCCACTACTACC +CCCTTTAGACGACATATTAATAAGACAAGTTTAACAATAAAATTAATCACGAGTACCCTACTACCAACCA +CTATTATATGATTACAGTACCTTGACTAAAGTCTCTAGTCACAAGATCAATACTACCAACCTACGCTATT +ATATGATTATAGTTTCTATTTTTATAGGAACGCGTACGAGAAAATCAAATGTCTAAGTTCTAACGGTAGT +GTTGATAAACGATTGTTATCCGCGGATACCTCATCTATCATGTTGTCTATTTTCTTACTTTGTTCTATTA +ACCTATTAGCATTATATATTATTTGATTATAAAACTTATATTGCTTATTAGCCCAATCTGTAAATATCGG +ATTATTAACATATCGTTTCTTTGTAGGTTTATTTAACTTGTACATCACTGTAAGCATGTCCGTACCATTT +ATTTTAATTTGACACATATCAGCAATTTCTTTTTCGCAGTCGGTTATATATTCTATATAAGATGGATACG +TATCACATATGTACTTATAGTCTACTAATATGAAGTACTTAATACATATTTTCAGTAACGATTTAGCCTT +ATTACCTATTAATAAGTGCCTGTCGTTGGATAGGTAATCAACTGTTTTCTTAATACATTCGATGGTTGGT +AATTTACTCAAAATAATTTCCAATATCTTAATATATATTTCTGCTATTTCTGGTATACATGCATGTGCCA +TTATAACACAAATACCAATACATGTAGACCCATATGTTGTTGTTATATTAATATCTGCGCCATTATCTAT +TAACCATTCTATTAGGTCAACACTATGCGACTCGATACAATAATAAAGTATACTACGTCCATGTTTATCT +ATTTTGTTTATATCATCGATATACGGCTTACAAATTTCTAGTATCGATAACACTTCTGACTCGTGAATAA +ATAAGGTAGGGAATAACGGCATAATATTTATTATGTTATCATCATTAACAACTACGTTTCCATTTTTTAA +AATATACTCTACAACTTTAGGATCCCTATTGTCAAATCTTTTAAAATATTTATTTATATGCTTAAATCTA +TATAATATAGCTCCTTCCCTAATCATACATTTGATAACATTGATGTACACTGTATGATAAGATACATATT +CTGACAATAGATCTTGTATAGAATCTGTATATCTTTTAAGAATTGAGGATATTATGACATTATTACGTAA +ACTATTACACAATTCTAAAATATAAAATGTATCATGGGCAGATAATAGTTTATCCACTATATAATTATCT +ATTTTATGATTTTTCTTCCTATATTGTTTACGTAAATAGATAGATAGAATATGCATTAGTTCATTACCGC +TATAGTTACTATCGAATAACACGTCAAATATTTCCCGTTTAATATCGCATTTGTCAACATAATAATAGAG +TATGGTACGTTCACGATAAGTATAATGACACATCTCGTTTTCGTGCGAAATTAAATAGTTTATCACGTCC +AAAGATGTCACATAACCATCTTGTGACCTAGTAATAATATAATAATAGAGAACTGTTTTACCCATTCTAT +TATCATAATCAGTGGTGTAGTCATAATCTAAATAATCAAACTCGTCATCCCAATTAAAATAAATATAATC +AGTACATTGAATGGGTATGATATTGTACCCATACTGTATGTTGCTACATGTAGGTATTCCTTTATCCAAT +AATAGTTTAAATACATCTATATTAGGATTTGATGTTGTCGCGTATTTCTCTACAATATTAATACCATTTT +TGATACTATTTATTTCTATACCTTTCGAAATTAGTAATTTCAATAAGTCTATATCGATGTTATCAGAACA +TAGATATTCAAATATATCAAAATCATTGATATTTTTATAGTCGACTGACGACAATAACAAAATCACAACA +TCGTTTTTGATATTATTATTTTTTTTGGTAACGTATGCCTTTAATGGAGTTTCACCATCATACTCATATA +ATGGATTTGCACCACTTTCTATTAATGATTGTGCACTACTGGCATCGATGTTAAATGTTTTACAACTATC +ATAGAGTATCTTATCGTTAACCATGATTGGTTGTTGATGTTATCACATTTTTTGGTTTCTTTCATTTCAG +TTATGTATGGATTTAGCACGTTTGGGAAGCATGAGCTCATATGATTTCAGTACTGTAGTGTCAGTACTAT +TAGTTTCGATCAGATCAATGTCTAGATCTATAGAATCAAAACACAATAGGTCAGAAGATAATGAATATCT +GTACGCTTCTTCTTGTACTGTAACTTCTGGTTTTGTTAGATGGTTGCATCGTGCTTTAACGTCAATGGTA +CAAATTTTATCCTCGCTTTGTGTATATCATATTCGTCTCTAGTATAAAATTCTATATTCAAATTATCATG +CGATGTGTGTACGCTAACGGTATCAATAAACGGAGCACAGCATTTAGTCAACAGTAATCCAAAATTTTTT +AAAGTATATCTTAACGAAAGAAGTTGTCATCGTTAGAGTGTGGTAAATCATTGTCTACGGTACTAGATCC +TCATAAGTGTATATATCTAGAGTAATATTTAATTTATCAAATGGTTGATAATATGGATGTTGTGGCAATT +TCCTAATACGGAAATAAGACATAAACACGCAATAAATCTAATTGCGGACATGTTACACTCCTTAAAAAAT +ACGAATAAACACTTTGGCTTTTAGTAAGTGTCATTTAACACTATACTCATATTAATCCATGGACTCATAA +TCTCTATACGGGATTAACGGATGTTCTATATACGGGGATGAGTAGTTCTCTTCTTTAACTTTATACTTTT +TACTAATCATATTTAGACTGATGTATGGGTAATAGTGTTTGAAGAGCTCGTTCTCATCATCAGAATAAAT +CAATATCTCTGTTTTTTTGTTATACAGATGTATTACAGCCTCATATATTACGTAATAGAACGTGTAATCT +ACCTTATTAACTTTCACCGCATAGTTGTTTGCAAATACGGTTAATCCTTTGACCTCGTCGATTTCCGACC +AATCTGGGCGTATAATGAATCTTAACTTTAATTTCTTGTAATCATTCGAAATAATTTTTAGTTTGCATCC +GTAGTTATCTCCTCTATGTAACTGTAAATTTCTCAACGCGATATCTCCATTAATAATGATGTCGAATTCG +TGTTGTATACCCATACTGAATTGATGAACTAATACCGACGGTATTAATAGTAATTTACTTTTCATCTTTA +CATACTTGGTAATAGTTTTACTATCATAAGTTTATAAATTCCACAAGCTACTATGGAATATACCAACCAT +CTTAGTATAGAACACATGTCTTAAAGTTATTAATTAATTACATGTTGTTTTATATATCGCTACGAATTTA +AACAGAGGAATCAGTTAGGAAGAAAAAATTATCTGTCATCATCATCATCTATTGGATAACATCTCTGTAT +TCTACGATAGAGTGCTATTTTAAGATGTGACAGATCCGTGTCATCAAATATATACTCCATTAAAATGATT +ATTCCGGCAGCGAACTTGATATTGGATACATCACGACCTTTGTTAATATCCACGACAATAGACAGCAATC +CCATTGTTCCATAAACAGTGAGTTTATCTTTCTTTGAAGTGATATTTTGTAGAGATCTTATAAAACTGTC +GAATGACATCGTATTTATATCTTTAGCTAAATCATATATGTTACCATCATAATATCTAACAGCATCTATC +TTAAACGTTTCCATCGCTGTAAAGACGTTTCCGATAGATGGTCTCGTTTCATCAGTCATACTGAGCCAAC +AAATGTAATCGTGTATAACATCTTTGATAGAATCAGACTCTAAAGAAAAGGAATCGGCTTTATTATACAC +ATTCATGATAAACTTAATGAAAAATGTTTTTCGTTGTTTAAGTTGGATGAATAGTATGTCTTAATAATTG +TTATTATTTCACTAATTAATATTTAGTAACGAGTACACTCTATAAAAACGAGAATGACATAACTAATCAT +AACTAGTTATCAAAGAATGTCTAGGACGCGTAATTTTTTATGGTATAGATCCTGTAAGCGTTGTCTGTAT +TCTGGAGCTATTTTCTCTATCGCATTAGTGAGTTCAGAATATGTTATAAATTTAAATCGAATAACGAACA +TAACTTTAGTAAAGTCGTCTATATTAACTCTTTTATTTTCTAGCCATCGTAATACCATGTTTAAGATAGT +ATATTCTCTAGTTACTACGATCTCATCGTTGTCTAGAATATCGCATACTGAATCTACATCCAATTTTAGA +AATTGGTCTGTGCTACATATCTCTTCTATATTATTGTTGATGTATTGTCGTAGAAAACTATTACGTAGAC +CATTTTCTTTATAAAACGAATATATAGTACTCCAATTATCTTTACCGATATATTTGCATACATAATCCAT +TCTCTCAATCACTACATCTTTAAGAGTTTGGTTGTTAAGATATTTGGCTAAACTATATAATTCTATTAGA +TCATCAACAGAATCAGTATATATTTTTCTAGATCCAAAGATGAACTCTTTGGCATCCTCTATAATATTAT +CAGAAAAGATATTTTCGTGTTTTAGTTTATCAAGATTTAACCTGTTCATATCCATGATTAACGACGTCAT +ATAACCACATAAAATAAAAATCCATTTTCATTTTTAGCACAATACTATTCATAATTGATATTGATGTAAT +ATTTTGTTACTTTGAACGTAAAGACAGTACACGGGTCCGTATCTCCAACAAGCACGTAGTAATCAAATTT +GGTGTTGTTAAACTTCGCAATATTCATCAATTTAGATAGAAACATATACTCATCATCTGTTTTAGGAATC +CATGTATTATTACCACTTTCCAACTTATCATTATCCCAGGCTATGTTTCGCCCATCATCGTTGCACAGAG +TGAATAATTCTTTTGTATTCGGTAGTTCAAATATATGATCCATGCATATATCGACAAAGCTATTGTAGAT +GTGATTTTTCCTAAATCTAATATAAAACTCGTTTACTAGCAAACATTTTCCTGATTTATCGACCAAGACA +CACATGGTTTCTAAATCTATCAAGTGGTGGGGATCCATAGTTATAACGCAGTAACATAAATTATTACCTT +CTTGACTGTCGCTAATATCTATATACTTATTGTTATCGTATTGGATTCTACATATAGATGGCTTGTATAT +CAAAGATATAGAACACATAACCAATTTATATTCTCGCTTTGTATTTTCGAATCTAAAGTTAAGAGATTTA +GAAAACATTATATCATCGGATGATGATATCACTGTTTCCAGAGTAGGATATATTAAAGTCTTTAAAGATT +TTGTCCGATTCAAATAAATCACTAAATAATATCCCATATTATCATCTGTTATAGTCGTGTCATTAAATCT +ATTATATTTTATGAAAGATATATCACTGCTCACCTCTATATTTCGTACATTTTTAAACTGTTTGTATAAT +ATCTCTCTAATACAATCAGATATATCTATTGTGTCGGTAGACGATACCGTTACATTTGAATTAATGGTGT +TCCATTTTACAACTTTTAACAAGTTGACCAATTCATTTCTAATAGTATCAAACTCTCCATGATTAAATAT +TTTAATAGTATCCATTTTATATCACTACGGACATAAACCATTGTATATTTTTTATGTTTATTAGTGTACA +CATTTTGGAAGTAAGTTCCTGGATCGGATGTCACCGCAGTAATATTGTTGATTATTTCTGACATCGACGT +ATTATATAGTTTTTTAATTCCATATCTTTTAGAAAAGTTAAACATCCTTATACAATTTGTGGAATTAATA +TTATGAATCATGGTTTTTACACATAGATCTATTACAGGCGGAACATCAATTATTATGGCAGCAACTAGTA +TCATTTCTACATTGTTTATGGTGATGTTTATCTTCTTCCAGCGCATATAGTCTAATATCGATTCAAACGC +GTGATAGTTTATACCATTCAATATAATCGCTTCATCCTTTAGATGGTGATCCTGAATGTGTTTAAAAAAT +TATACGGAGACGCCGTAATAATTTCCCCATTGATAGAAAATATCACGCTTTCCATTTTCTTGAAGTACTA +AAAGTAATTATAATATAATGTAAAGGTTTATATATTCAATATTTTTTATAAAAAAAATCATTTTGACATT +AATTCCTTTTTAAATTTCAGTCTATCATCTATAGAAACATATTCTATGAATTTATAAAATGCTTTTACGT +ATCCTATCGTAGGTGATAGAACCGCTAAAAAACCTATCGAATTTCTACAAAAGAATCTGTTATATGGTAT +AGGGAGAGTATAAAACATTAAATGTCCGTACTTATTAAAGTATTCAGTAGCCAATCCTAACTCTTTCGAA +TAATTATTAATGGCTCTTATTCTGTACGAATCTATTTTTTTGAACAATGGACCTAGTGGTATATCTTGTT +CTATGTATCTAAAATAATGTCTGACTAGATCCGTTAGTTTAATATCCGCAGTCATCTTGTCTAGAATGGC +AAATCTAACTGCGGGTTTAGGCGTAGGCGTTAGTTTAGTTTCTATATCTACATCTATGTCTTTATCTAAC +ACCAAAAATATAATAGCTAATATTTTATTACAATCATCCGGATATTCTTCTACGATCTCACTAACTAATG +TTTCTTTGGTTATACTAGTATAGTCACGATCAGACAAATAAAGAAAATCAGATGATCGATGAATAATACA +TTTAAATTCATCATCTGTAAGATTTTTGAGATGTCTCATTAAAATATTATTAGTGTCAGTTCTCATTATC +ATATATTGACAGCAGCTATTACACTTATTTTATTTTTCTGTATTTTATTACTTTTCACCATATAGATCAG +TCATTAGATCATCAAAATACTTTTCAATCATCCTAAAGAGTATGGTGAACGAATCTTCCCATCTAATTTC +TGAACGTCTACCAATGTCTCTAGCCACTTTGGCACTAATAGCGATCATTCGCTTAACATCTTCTACATTA +TTAACTGGTTGATTCAATCTATCTAGCAATGGACCGTCGGATAGCGTCATTCTCATGTTCTTAATCAATG +TACATACATCGTCATCATCTACCAATTCATCAAACAATATAAGCTTTTTAAAATCATCATTATAATAGGA +TGGATCGCCGTCATTTCTCCAAAGAATATATCTAATAAGTAGAGTCCTCATGCTTAGTAATTTAACTATT +TTAGTTAACAACTATTTTTTATGTTAAATCAATTAGTAACACCGCTATGTTTAATACTTATTCATATTTT +AGTTTTAGGATCGAGAATCAATACAAAAATTAATACATCAATTTTGGAAATACTTAGTTTCCACGTAGTC +AATGAAACATTTGAGCTCATCGTAAAGGACGTTCTCGTACAAGACGTAACTATAAATTGGTTTATATTTG +TTCAAGATAGATACAAATCCGATAACTTTTTTGACGAATTCTACGGGATTCACTTTAAAAGTGTCATACC +GGGTTCTTTTTATTCTTTTAAACAGATCGATTGTGTGATGTTGATTAGGTCTTTTACGAATTTGATACAG +AATAGCGTTTACATATCCACCATAGTAATCAATAGCCATTTGTTCGTATGTCATAAATTCTTTAATTATA +TGACACTGTGTATTATTTAGTTCGTCCTTGTTCATCATTAGGAATCTATCCAATATGGCAATTATATTAG +AACTATAACTGCGTTGTATGCGCATGTTGATGTGTCTGTTTATACAATCAATTATACTAGGATCCATACC +ACTACAATCGGGTAAAATTGTAGCATCATATACCATTTCTAGTACTTTAGATTCATTGTTATCCATTGCA +GAGGACGTCATGATCGAATCCAAAAAAATATATTATTTTTATGTTATTTTGTTAAAAATAATCATCAAAT +ACTTCGTAAGATACTCCTTCATGAACATAATCAGTTACAAAACGTTTATATGAAGTAAAGTATCTACAAT +TTTTACAAAAGTCAGGATGCATAAGTACAAAGTACGCGATAAACGGAATAATAATAGATTTATCTAGTTT +ATCTTTTTCTATCTCTTTCATAGTTATATACATGGTCTCAGAAGTCGGATTATGTAACATCAGCTTCGAT +AAAATGACTGGGTTATTTAGTCTTACACATTCGCTCATACATGTATGACCGTTAACTATAGAGTCTACAC +TAAAATGATTGAATAATAGATAGTCTACCATTGTTTCGTATTCAGATAGTACAGCGTAGTACATGGCATC +TTCACAAATTATATCATTATCTAATAGATATTTGACGCATCTTATGGATCCCACTTCAACAGCCATCTTA +AAATCGGTAGAATCATATTGCTTTCCTTTATCGTTAATAATTTCTAGAACATCATCTCTATCATAAAAGA +TACAAATATTAACTGTTTGATCAGTAATAACATTGCTAGTCGATATCAATTTGTTAATAAGATGCGCTGG +GCTCAATGTCTTAATAAGAAGTGTAAGAGGACTATCTCCAAATTTGTTTTGTTTATTAACATCCGTTGAT +GGAAGTAAAAGATTTATAATGTCTACATACTTGACTGTTTTAGAGCATACAATATGGAGAGGCGTATTTC +CATCATGATCTGGTTTTGAGGGACTAATTCCTAGTTTCATCATCCATGAGATTGTAGAAGCTTTTGGATT +GTCTGACATAAGATGTCTATGAATATGATTTTTGCCAAATTTATCCACTATCCTGGCTTCGAATCCGATA +GACATTATTTTTTTAAACACTCTTTCTGAAGGATCTGTACACGCCAACAACGGACCACATCCTTCTTCAT +CAACCGAGTTGTTAATCTTGGCTCCATACTGTACCAATAAATTTATTCTCTCTATGACTTCATCATCTGT +TCCCGAGAGATAATATAGAGGTGTTTTATTATGTTTATCACATGCGTTTGGATCTGCGCCGTGCACCAGC +AGCATCGCGACTATTCTATTATTATTAATTTTAGAAGCTATATGCAATGGATAATTTCCATCATCATCCG +TCTCATTTGGAGAGTATCCTCTATGAAGAAGTTCTTCTATAAATCGTTCATCTAGTCCTTTAATGCCACA +ATACGCATGTAGAATGTGATAATTTCCAGAGGGTTCGATAACTTGTAGCATATTCCTAAATACATCTAAA +TTTTTACTATTATATTTGGCATAAAGAGATAGATAATACTCGACCGACATAATGTTGTGTTGTCCATTAT +AGTATAAAAATTAATATTTCTATTTCTATATATTTGCAACAATTTACTCTCTATAACAAATATCATAACT +TAGTTCTTTTATGTCAAGAAGGCACTGGTTTAATTCATCTATAAATGTCACTCCATAACTACCACGCATA +CTATACTCAGAATTATGATAAAGATATTTATTCTTGGGGTGTAAGTAATGGGGATTAATCTTTGTTGGAT +CAGTCTCTAAGTTAACACATGTCACACATGATCCATTTATAGTTATATCACACGATGATGATTTATGAAT +TGATTCCGGAAGATCGCTATTGTATTTTGTAGTTCCACAATTCATTTCCATACATGTTATTGTCACACTA +ATATTATGATGAACTTTATCTAGCCGCTGAGTGGTAAACAACAGAACAGATAGTTTATTATCTTTACCAA +CACCCTCAGCCGCTGCCACAAATCTCTGATCCGTATCCATGATGGTCATGTTTACTTTTAGTCCGTATCC +AGTCAACACTATGTTAGCATTTCTGTCGATATAGCTTTCACTCATATGACACTCACCAATAATTGTAGAA +TTAATGTCGTAATTTACACCAATAGTGAGTTCGGCGACAAAGTACCAGTACCGGTAATCTTGTCGATGAG +GACATATAGTATTCTTGTATTCTACCGAATACCCGAGAGATGCGATACAAAAGAGTAAGACTAATTTGTA +AACCATCTTACTCAAAAATATGCGACAATAGGAAATCTATCTTATACACATAATTATTCTATCAATTTTA +CCAATTAGTTAGTGTAATGTTAACAAAAATGTGGGATAATTTAATAGTTTTTCCTTACACAATTGACATA +CATGAGTCTGAGTTCCTCGTTTTTGCTAATTATTTCGTCCAATTTATTATTCTTGACATCGTCAAGATCT +TTTGTATAGGAGTCAGACTTGTATTCAACATGTTTTTCTATAATCATCTTAGCTATTTCGGCATCATCCA +ATAGTACATTTTCCAGATTAACAGAATAGATATTAATGTCGTATTTGAACAGAGCCTGTAACATCTCAAT +GTCTTTATTATCTATAGCCAATTTGATGTCCGGAATGAAGAGAAGGGAATTGGTGTTTGTTGACGTCATA +TAGTCGAGCAAGAGAATCATCATATCCACGTGTCCATTTTTTATAGTGGTGTGAATACAACTAAGGAGAA +TAGCCAGATCAAAAGGAGATGGTATCTCTGAAAGAAAGTAGGAAACAATACTTACATCATTAAGCATGAC +AGCATGATAAAATGAAGTTTTCCATCCAGTTTTCCCATAGAACATCAGTCTCCAATTTTTCTTAACAAAC +AGTTTTACCGTTTGCATGTTACCACTATCAACCGCATAATACAATGCGGTGTTTCCTTTGTCATCAAATT +GTGAATCATCCATTCCACTGAATAGCAAAATCTTTACTATTTTGGTATCTTCTAATGTGGCTGCCTGATG +TAATGGAAATTCATTATCTAGAAGATTTTTCAATGCTCCAGCGTTCAACAACGTACATACTAGACGCACG +TTATTATCAGCTATTGCATAATACAAGACACTATGACCATTGATATCCGCCTTAAATGCATCTTTGCTAG +AGAGAAAGCTTTTCAGTTGCTTAGACTTCCAAGTATTAATTCGTGACAGATCCATGTCTGAAACGAGACG +CTAATTAGTGTATATTTTTTCATTTTTTATAATTTTGTCATATTGTACCAGAATTAATAATATCTCTAAT +AGATCTGATTAGTAGATATATGGCTATCGCAAAACAACATATACACATTTAATAAAAATAATATTCATTA +AGAAGATTCAGATTCCACTGTACCCATCAATATAAAATAAAATAATTATTCCTTACATCGTACCCATAAA +CAATATATTAAGTATATTCCACCTTACCCATAAACAATATAAATCCAGTAATATCATGTCTAATGATGAA +CACAAATGGTGTATTAAATTCCAGTTCTTCAGGAGATGATCTCGCCGTAGCTACCATGATAGTAGATGCC +TCCGCTACAGTTCCTTGTTCGTCTACATCTATCTTTACATTCTGAAACATTTTATAAATATATAATGGGT +CCCTAGTCATATGTTTAAACGACGCCTTATCTGGATTAAACATACTAGGAGCCATCATTTCGGCTATCGA +CTTAATATCCCTCTTGTTTTCGATAGAAAATCTAGGGAGTTTAAGATTGTACATTTTATTCCCTAATTGA +GATGACCAATATTCTAATTTTGCAGGCGTGATAGAATCTGTGAAATGGGTCATATTATCACCTATTGCCA +GGTACATACTAATATTAGCATCCTTATACAGAAGGCGCACCATATCATATTCTTCGTCATCGATTGTGAT +TGTATTTCCTTGCAATTTAGTAACTACGTTCATCATGGGAACCGTTTTCGTACCGTACTTATTAGTAAAA +CTAGCATTGTGTGTTTTAGTGATATCAAACGGATATTGCCACGTACCTTTAAAATATATAGTATTAATGA +TTGCCCATAGAGTATTATCGTCGAGCATAGTAGAATCAACTACATTAGACATACCAGATCTACGTTCTAC +TATAGAATTAATTTTATTAACCGCATCTCGTCTAAAGTTTAATCTATATAGGCCGAATCTATGATATTGT +TGATAATACGACGGTTTAATACACACAGTACTATCGACGAAACTTTGATACGTTAGATCTGTGTACGTAT +ATTTAGATGTTTTCATCTTAGCTAATCCGGATATTAATTCTGTAAATGCTGGACCCAGATCTCTTTTTCT +CAAATTCATAGTATTCAATAATTCTACTCTAGTATTACCTGATGCAGACAATAGCGACATAAACATAGAA +AACGAATACCCAAACGGTGAGAAGACAATATTATCATTATCATCCTCATCCCCATTTTGAATATTTTTAT +ACGCTAATATACCAGCATTGATAAATCCCTGCAGACGATATGCGGATACTGAACACGCTAATGATAGTAT +CAATAACGCAATCATGATTTTTATGGTATTAATAATTAACCTTATTTTTATGTTTGGTATAAAAATTATT +GATGTCTACACATCCTTTATAATCAACTCTAATCACTTTAACTTTTACAGTTTTCCCTACAAGTTTATCC +CTATATTCAACATATCTATCCATATGCATCTCTTAACACTCTGCCAAGATAGCTTCAAAGTGAGGATAGT +CAAAAAGATAAATATATAGAGTATAATCATTCTCGTATACTCTGCCCTTTATTACATCGCCCGCATTGGG +CAACGAATAACAAAATGCAAGCATCGTGTTAACGGGCTCGTAAATTGGGATAAAATTATGTTTTTATTGT +TTATCTATTTTATTCAAGAGAATATTCAGGAAGTTCCTTTTCTGGTTGTATCTCGTCGCAGTATATATCA +TTTGTACATTGTTTCATATTTTTTAATAGTCTACACCTTTTAGTAGGACTAGTATCGTACAATTCATAGC +TGTATTTTGAATTCCAATCACGTATAAAAATATCTTCCAATTGTTGACGAAGACCTAATCCATCATCCGG +TGTAATATTAATAGATGCTCCACATATATCCGTAAAGTAATTTCCTGTCCAATTTGATGTACCTATATAC +GCCGTTTTATCGGTTACCATATATTTTGCATGGTTTACCCTAGAATACGGAATGGGAGGATCAGCATCTG +GTACAATAAATAGCTTTACTTCTATATCTATGTTTTTAGATTTTAGCATAGCTATAGATCTTAAAAAGTT +TCTCATGATAAACGAAGATCGTTGCCAGCAACTAATCAATAGCTTAACGGATACTTGTCTGTCTATAGCG +GATCTTCTTAATTCATCTTCTATATAAGGCCAAAACAAAATTTTACCCGCCTTTGAATAAATAATAGGAA +TAAAGTTCATAACAGATACATAAACGAATTTACTCGCATTTCCGATACATGACAATAAAGCGGTTAAATC +ATTGGTTCTTTCCATAGTACATAATTGTTGTGGTGCAGAAGCAATAAATACAGAGTGTGGAACACCGCTT +ACGTTAATACTAAGAGGATGATCTGTATTATAATACGACGGATAAAAGTTTTTCCAATTATATGGTAGAT +TGTTAACTCCAAGATACCAGTATACCTCAAAAATTTGAGTGAGATCCGCTGCCAAGTTCCTATTATTGAA +GATCGCAATACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAATA +TGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCTAGGATATTTGTAATATCTATGTATC +GTACTTCAACTCCGGCCATTTGTAGTCTTTCAACATCCTTTAATGGTTTGTTGGATTTATTGACGGCTAC +TCTAACTCTTACTCCTCTTTTGGGTAATTGTACAATCTCGTTTAATATTACCGTGCCGAAATTCGTACCC +ACTTCATCCGATAAACTCCAATAAAAAGATGATATATCTAGTGTTTTTATGGTATTGGATAGAATTTCCC +TCCACATGTTAAATGTAGTCAAATATACTTTATCAAATTGCATACCTATAGGAATAGTCTCTGTAATCAC +TGCGATTGTATTATCCGGATTCATTTTATTTGTTAAAAAAATAATCCTATATCACTTCACTCTATTAAAA +ATCCAAGTTTCTATTTCTTTCATGACTGATTTTTTAACTTCATCCGTTTCCTTATGAAGATGATGTTTGG +CGCCTTCATAAATTTTTATTTCCCTATTACAATTTGCATGTTGCATGAAATAATATGCACCTGAAACATC +GCTAATCTCATTGTTTGTTCCCTGGAGTATGAGAGTCGGGGTGTTAATCTTGGGAATTATTTTTCTAACC +TTGTTGGTAGCCTTCAAGACCTGACTAGCAAATCCAGCCTTAATTTTTTCATGATTGACTAATGGATCGT +ATTGGTATTTATAAACTTCATCCATATCTCTAGATACTGATTCTGGACATAGCTTTCCGACTGACGCATT +TGGTGTAATGGTTCCCATAAGTTTTGCAGCTAGCAGATTCAGTCTTGGAACAGCGTCTGCATTAACTAGA +GGAGACATTAGAATCATTGCTGTAAACAAGTTTGGATTATCGCAAGCAGCTAGTATAGAAATTGTTGCTC +CCATGGAATGACCCAATAAGAAGACTGGAACTCCTGGATAAGTAGATTTAATAGTCACCACGTGCTGTAC +CACATCTCTAACATACTTACCAAAGTCATCAATCATCATTTTTTCACCATTACTTCTTCCATGGCCAATA +TGATCATGTGAGAATACTAAAATTCCTAACGATGATATGTTTTCAGCTAGTTCGTCATAACGTCCAGAAT +GTTCACCAGCTCCATGACTTATGAATACTAATGCCTTAGGATATGTAATAGGTTTCCAATATTTACAATA +TATGTAATCATTGTCCAGATTGAACATACAGTTTGTACTCATGATTCACTATATAACTATCAATATTAAC +AGTTCGTTTAATGATCATATTATTTTTATGTTTTATTGATAATTGTAAAAATATACAATTAAATCAATAT +AGAGGAAGGAGACGGTACTGTATTTTGTGAGATAGTAATGGAGACTAAATCAGATTATGAGGATGCTGTT +TTTTACTTTGTGGATGATGATGAAATATGTAGTCGCGACTCCATCATTGATCTAATAGATGAATATATCA +CGTGGAGAAATCATGTTATAGTGTTTAATAAAGATATTACCAGTTGTGGAAGACTGTACAAGGAATTGAT +AAAGTTCGATGATGTCGCTATACGGTACTATGGTATTGATAAAATTAATGAGATTGTCGAGGCTATGAGT +GAAGGAGACCACTACATCAATCTTACAGAAGTCCATGATCAGGAAAGTCTATTCGCTACCATAGGAATAT +GTGCTAAAATCACTGAACATTGGGGATACAAAAAGATTTCAGAATCTAAATTCCAATCATTGGGAAACAT +TACAGATCTGATGACCGACGATAATATAAACATCTTGATACTTTTTCTAGAAAAAAAAATGAATTGATGA +TATAAGTGTCTTCATAACGCATTATTACGTTAGCATTCTATTATCCAGTGTTAAAAAAATTATCCTATCA +TGTATTTGAGAGTCTTATATGTAGCAAACATGATAACTGCAATACCCATAATCTTTAGATATTCACGCGT +GCTATGGATGGCATTATCCCGCGGTGCGGAAATGTACGTTATATAATCTACAAAATAATCATCGCATATA +GTATGAGATAGTAGAGTAAACATTTTTATCGTTTCTACTGGGTTCATACATCGTCTACCCAATTCGGTAA +TGAATGAAATTGTCGCCAATCTTACACCCAAACCCTTGTTGTTCATTAGTATAGTATTAACTTCATTATT +TATGTCATAAACTGTAAATGATTCTGTAGATGCCATATCACACATGATATTCATGTCACTATTATAATCA +TTATTAACTTTATCACAATACGTGTTGATAATATCTACATATGATCTAGTTTTTGTGGGTAATTGTCTAT +ACAAGTCGTCTAAACGTTGTTTACTCATATAGTATTGAACAGCCATCATTACATGGTCCCGTTCCGTTGA +TAGATAATCGAGTATGTTAGTAGACTTGTCAAATCTATATACCATATTTTCTGGAAGCGGATATACATAG +TCGCGATCATCATTATCACTAGCCTCATCCTCTATATCATGTACATGTACATAATCTATGATATTATTAT +ACATAAACATCGACAACATACTATTGTCTATTATCTAAGTCCTGTTGATCCAAACCCTTGATCTCCTCTA +TCTGTACTATCTAGAGATTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTA +TTCTATCTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGCTTCCCCT +ATAATCTTCGTCTATTACACCGCCTCCTATATCAATGCCTTTTAGGGACAGACCAGACCTAGGAGCTATT +CTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACTGTCGTTCTCCAGGAGGGA +TAGTATAATCGTAAGCGCTATACAAATCATATCCGGCAGCACCCGGCGATTGCCTAGTAGGTGATTTAGC +TCTGTTAGTTTCCTTAACAAATCTAACTGGTGAGTTAATATTCATGTTGAACATAAAAAATATCATTTTA +TTTCAAAATTATTTACCATTCCATTCCATCCCATATATTCCATGAATAAGTGCGATTATTGTACACTTCT +ATAGTATCTATATACGATCCACGATAAAATCCTCCTATCAATAGCAGTTTATTATCCACTATGATCAATT +CTGGATTATCCCTCGGATAAATAGGATCATCTATCAGAGTCCATGTATTGCTGGATTCACAATAAAATTC +CGCATTTCTACCAACCAAGAATAACCTTCTACCAAACACTAACGCACATGATTTATAATGAGGATAATAA +GTGGATGGTCCAAACTGCCACTGATCATGATTGGGTAGCAAATATTCTGTAGTTGTATCAGTTTCAGAAT +GTCCTCCCATTACGTATATAACATTGTTTATGGATGCCACTGCTGGATTACATCTAGGTTTCAGAAGACT +CGGCATATTAACCCAAGCAGCATCCCCGTGGAACCAACGCTCAACAGATGTGGGATTTGGTAGACCTCCT +ACTACGTATAATTTATTGTTAGCGGGTATCCCGCTAGCATACAGTCTGGGGCTATTCATCGGAGGAATTG +GAATCCAATTGTTTGATATATAATTTACCGCTATAGCATTGTTATGTATTTCATTGTTCATCCATCCACC +GATAAGATATACTACTTCTCCAACATGAGTACTTGTACACATATGGAATATATCTATAATTTGATCCATG +TTCATAGGATACTCTATGAATGGATACTTGTATGATTTGCGTGGTTGTTTATCACAATGAAATATTATGT +TACAGTCTAGTATCCATTTTACATTATGTATACCTCTGGGAGAAAGATAATTTGACCTGATTACATTTTT +GATAAGAAGTAGCAGATTTCCTAATCTATTTCTTCGCCTCATATACCACTTAATGACAAAATCAACTACA +TAATCCTCATCTGGAACATTTAGTTCGTCGCTTTCTAGAATAAGTTTCATAGATAGATAATCAAAATTGT +CTATGATGTCATCTTCCAGTTCCAAAAAGTGTTTGGTAATAAAGTCTTTAGTATGACATAAGAGATTGGA +TAGTCCGTATTCTATACCCATCATGTAACACTCGATACAATATTCCTTTCTAAAATCTCGTAGGATAAAG +TTTATACAAGTGTAGATGATAAATTCTACAGATGTTAATATAGAAGCACGTAATAAATTGACGACGTTAT +GACTATCTATATATACCTTTCCAGTATATGAGTAAATAACTATAGAAGTTAGACTGTGAATGTCAAGGTC +TAGACAAACCCTCGTAACTGGATCTTTATTTTTTGTGTATTTTTGGCGTAAATGTGTGCAAAAGTATGGA +GATAACTTTTTCAATATCGTAGAATTGACTATTATATTACCTCCTATAGCTTCAATAATTGTTTTGAATT +TCTTAGTCGTGTACAATGCTAATATATTCTTACAGTACACAGTATTGACAAATATCGGCATTTATGTTTC +TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACC +CACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTA +ACATTGTAAATTTTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCA +TCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATAC +CGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACAT +GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGC +CACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC +AATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA +CAAGGCATCGTTTCTATGGCATTAAAGAGGTAGTTTTTTTCATTACTATCTTTAACATAAGTATCGATCA +AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT +AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC +GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAGTCATTGATATCTTTAGATA +TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTG +GATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATAGGTTCCATAACTAAATTAACAATAGTA +GTAATTTTTTTTCAGTTATCTGTATGACGACTGTACTTGGATCTTTTGTATATCGCTATCGCCGCAATCA +CTACAATAATTACAAGTATTATTGATAGCATTGTTATTACTACTATCATAATTAAATTATCGACATTCAT +GGGTGTTGAATAATCGTTATCATCATTTTGTAATTGTGACGTCATACTAGATAAATCATTTGTGAGATTG +TTGTGGGAAGCGGGCACGGAAGATGCATTATCATTATTATTTAACGCCTCCCATTCGGATTCACAAATGT +TACGCACGTTCAAAGTTTTATGGAAACTATAATTTTGTGAAAACAGATAACAAGAAAACTCGTCATCGTT +CAAATTTTTAACGATAGTAAACCGATTAAACGTCGAGCTAATTTCTAACGCTAGCGACTCTGTTGGATAT +GGGTTTCCAGATATATATCTTTTCAGTTCCCCTACGTATCTATAATCATCTGTAGGAAATGGAAGATATT +TCCATTTATCTACTGTTCCTAATATCATATGCGGTGGTGTAGAACCATTAAGCGCGAAAGATGTTATTTC +GCATCGTATTTTAACTTCGCAATAATTTCTGGTTAGATAACGCACTCTACCAGTCAAGTCAATGATATTA +GCCTTTACAGATATATTCATAGTAGTCGTAACGATGACTCCATCTTTTAGATGTGATACTCCTTTGTATG +TACCAGAATCTTCGTACCTCAAACTCGATATATTTAAACAAGTTAATGATATATTAACGCGTTTTATGAA +TGATGATATATAACCAGAAGTTTTATCCTCTGTGGCTAGCGCTATAACCTTATCATTATAATACCAACTA +GTGTAATTAATATGTGACATGACAGTGTGGGTACAAATATGTACATTATCGTCTACGTCGTATTTGATAC +ATCCGCATTCAGCCAACAAATATAAAATTACAAAAACTCTAACGACGTTTGTACACATCTTGATGCGGTT +TAATAAATGTTTTGATTTCAATTTATTGTAAAAAAAGATTCGGTTTTATACTGTTCGATATTCTCATTGC +TTATATTCTCATCTATCATCTCCACACAGTCAAATCCATGGTTAACATGTACCTCATCAACCGGTAAAAG +ACTATCGGATTCTTCTATCATCATAACTCGAGAATATTTAATTTGGTGGTCATTATTAATCAAGTCAATT +ATCTTATTTTTAACAAACGTAAGTATTTTACTCATTTTTTTATAAAAACTTTTAGAAATATACAGACTCT +ATCGTGTGTCTATATCTTCTTTTTATATCCAATGTATTTATGTCTGATTTTTCTTCATTTATCATATATA +ATGGTCCAAATTCTACACGTGCTTCGGATTCATCCAGATCATTAAGGTTCTTATAATCGCAACATCCTTC +TCTTCCATCTTCTACATCTTCCTTCTTATTCTTAGCGTCACAGAATCTACCACAGCAGGATCCCATGACG +AGAGTCACATTAAACTAATTCATTTTCAATTATAATATACTGATTAGTAATGACAATTAAAATAAAAATA +TTCTTCATAACCGGTAAGAAAGTAAAAAGTTCACATTGAAACTATGTCAGTAGTTATACATCATGAGATG +ATATACTCTATTTTGGTGGAGGATTATATGATATAATTCGTGGATAATCATTCTTAAGACACATTTCTTC +ATTCGTAAATCTTTTCACATTAAATGAGTGTCCATATTTTGCAATTTCTTCATATGATGGCGGTGTACGT +GGACGAGGCTGCTCCTGTTCTTGTAGTCGTCGACTGTCGTGTTTGCGTTTAGATCCCTCCATTATCGCGA +TCGCGTAGTGAGTACTATTTATACCTTGTAATTAAATTTTTTTATTAATTAAACGTATAAAAACGTTCCG +TATCTGTATTTAAGAGCCAGATTTCGTCTAATAGAACAAATAGCTACAGTAAAAATAACTAGAATAATCG +CTACACCCACTAGAAACCACGGATCGTAATACGGCAATCGGTTTTCGATAATAGGTGGAACGTATATTTT +ATTTAAGGACTTAACAATTGTCTGTAAACCACAATTTGCTTCCGCCGATCCTGTATTAACTATCTGTAAA +AGCATATGTTGACCGGGAGGAGCCGAACATTCTCCGATATTCAATTTTTGTATATCTATAATGTTATTAA +CCTCCGCATACGCATTACAGTTCTTTTCTAGCTTGGATACTACACTAGGTACATCATCTAAATCTATTCC +TATTTCCTCAGCGATAGCTCTTCTATCCTTTTCCGAAAGTAATGAAATCACTTCAATAAATGATTCAACC +ATGAGTGTGAAACTAAGTCGAGAATTACTCATGCATTTGTTAGTTATTCGGAGCGCGCAATTTTTAAACT +GTCCTATAACCTCTCCTATATGAATAGCACAAGTGACATTAGTAGGGATAGAATGTTGAGCTAATTTTTG +TAAATAACTATCTATAAAAAGATTATACAAAGTTTTAAACTCTTTAGTTTCTGCCATTTATCCAGTCTGA +GAAAATGTCTCTCATAATAAATTTTTCCAAGAAACTAATTGGGTGAAGAATGGAAACCTTTAATCTATAT +TTATCACAGTCTGTTTTGGTACACATGATGAATTCTTCTAATGCTGTACTAAATTCGATATCTTTTTCGA +TTTCTGGATATGTTTTTAATAAAGTATGAACAAAGAAATGGAAATCGTAATACCAGTTATGTTCAACTTT +GAAATTGTTTTTTATTTTCTTGTTAATGATTCCAGCCACTTGGGAAAAGTCAAAGTCGTTTAATGCCGAT +TTAATACGTTCATTAAAAACAAACTTTTTATTCTTTAGATGAATTATTATTGGTTCATTGGAATCAAAAA +GTAAGATATTATCGGGTTTAAGATCTGCATGTAAAAAGTTGTCACAACAGGGTAGTTCGTAGATTTTAAT +GTATAACAGAGACATCTGTAAAAAGATAAACTTTATGTATTGTACCAAAGATTTAAATCCTAATTTGATA +GCTAACTCGGTATCTACTTTATCTGCCGAATACAGTGCTAGGGGAAAAATTATAATATTTCCTCTTTCGT +ATTCGTAATTAGTTCTCTTTTCATGTTCGAAAAAGTGAAACATGCGGTTAAAATAGTTTATAACATTAAT +ATTACTGTTAATAACTGCCGGATAAAAGTGGGATAGTAATTTCACGAATTTGATACTGTCCTTTCTCTCG +TTAAACGCCTTTAGAAAAACTTTAGAAGAATATCTCAATGAGAGTTCCTGACCATCCATAGTTTGTATCA +ATAATAGCAACATATGAAGAACCCGCTTATACAGAGTATGTAAAAATGTTAATTTATAGTTTAATCCCAT +GGCCCACGCACACACGATTAATTTTTTTTCATCTCCCTTTAGATTGTTGTATAGAAATTTGGGTACTGTA +AACTCCGCCGTAGTTTCCATGGGACTATATAATTTTGTGGCCTCGAATACAAATTTTACTACATAGTTAT +CTATCTTAAAGACTATACCATATCCTCCTGTAGATATGTGATAAAAATCGTCGTTTATAGGATAAAATCG +TTTATCTTTTTGTTGGAAAAAGGATGAATTAATGTAATCATTCTCTTCTATCTTTAGTAGTGTTTCCTTA +TTAAAATTCTTAAAATAATTTAACAATCTAACTGACGGAGCCCAATTTTGGTGTAAATCTAATTGGGACA +TTATGTTGTTAAAATATAAACAGTCTCCTAATATAACAGTATCTGATAATCTATGGGGAGACATCCATTG +ATATTCAGGGGATGAATCATTGGCAACACCCATTTATTGTACAAAAAGCCCCAATTTACAAACGAAAGTC +CAGGTTTGATAGAGATAAACTATTAACTATTTTGTCTCTGTTTTTAACACCTCCACAGTTTTTAATTTCT +TTGGTAATGAAATTATTCACAATATCAGTATCTTCTTTATCTACCAGAGATTTTACTAACTTGATAACCT +TGGCTGTCTCATTCAATAGGGTAGTGATATTTGTATGTATGATATTGATATCTTTTTGAATTGTTTCTTT +TAGAAGTGATTCTTTGATGGTATCAGCATACGAATTACAATAATGCAGAAACTCAGTTAACATGCAGGAA +TTATAGTAAGCCAATTCCAATTGTTGCCTGTATTGTATTAGAGTATTAATATGCGCAATGATGTCCTTGC +GTTTCTCTGATAGAATGCGAGCAGCGATTTTGGCGTTATCATTTGACGATATTTCTGGAATGACGAATCC +TGTTTCTACTAACTTCTTGGTAGGACAAAGTGAAACAATCAAGAAAATAGCTTCTCCTCCTATTTGTGGA +AGAAATTGAACTCCTCTAGATGATCTACTGACGATAGTATCTCCTTGACAGATATTGGACCGAACTACGG +AAGTACCTGGAATGTAAAGCCCTGAAACCCCCTCATTTTTTAAGCAGATTGTTGCCGTAAATCCTGCACT +ATGCCCAAGATAGAGAGCTCCTTTGGTGAATCCATCACTATGTTTCAGTTTAACCAAGAAACAGTCAGCT +GGTCTAAAATTTCCATCTCTATCTAATACAGAATCCAACTTGATGTCAGGGACTATGACCGGTTTAATGT +TATATGTAACATTGAGTAAATCCTTAAGTTCATAATCATCGTTGTCATCAGTTATGTACGATCCAAACAA +TGTTTCTACCGGCATGGTGGATACGAAGATGCTATCCATCAGAATGTTTCCCTGATTAGTATTTTCTATA +TAGCTATTCTTCTTTAAACGATTTTCCGAATCAGTAACTATGTTCATTTTTTTAGGAGTAGGACGTCTAG +CCAGTATGGAAGAGGATTTTCTAGATACTCTCTTCAACATCTTTGATCTCAATGGAATGCAAAACCCCAT +GGTGTAACAACCAACGATAAAAATAATATTGTTTTTTCACTTTTTATAATTTTACCATCTGACTCATGGA +TTCATTAATATCTTTACAAGAGCTACTAACGTATAATTCTTTATAACTAAACTGAGATATATACACCGGA +TCTATGGTTTCCATAATTGAGTAAATGAATGCTCGGCAATAACTAATGGCAAATGTATAGAACAACGAAA +TTATACTAGAGTTGTTAAAGTTAATATTTTCTATGAGTTGTTCCAATAAATTATTTGTTGTGACTGCGTT +CAAGTCATAAATTATCTTGATACTATCCAGTAAACAGTCTTTAAGTTCTGGAATATTATCATCCCATTGT +AAAGCCCCTAGTTCGACTATCGAATATCCTGCTCTGATAGCAGTTTCAATATCGACGGACGTCAATACTG +TAATAAAGGTGGTAGTATTGTCATCATCGTGATAAACTACGGGAATATGGTCGTTAGTAGGTACCGTGAC +TTTACACAACGCGATATATAACTTTCCTTTTGTACCATTTTTAACGTAGTTGGGACGTCCTGCAGGGTAT +TGTTTTGAAGAAATGATATCGAGAACAGATTTGATACGATATTTGTTGGATTCCTGATTATTCACTATAA +TATAATCTAGACAGATAGATGATTCGATAAATAGAGAAGGTATATCGTTGGTAGGATAATACATCCCCAT +TCCAGTATTCTCGGATACTCTATTGATGACACTAGTTAAGAACATGTCTTCTATTCTAGAAAACGAAAAC +ATCCTACATGGACTCATTAAAACTTCTAACGCTCCTGATTGTGTTTCGAATGCCTCGTACAAGGATTTCA +AGGATGCCATAGATTCTTTGACCAACGATTTAGTATTGCGTTTAGCATCTGATTTTTTTATTAAATCAAA +TGGTCGGCTCTCTGGTTTACTACCCCAATGATAACAATAGTCTTGTAAAGATAAACCGCAAGAAAATTTA +TACACATCCATCCAAATAACCCTAGCACCGTCGGATGATATTAATGTATTATTATAGATTTTCCATCCAC +AGTTATTGGGCCAGTATACTGTTAGCAACGGTATATCGAATAGATTACTCATGTAACCTACTAGAATGAT +AGTTCGTGTACTAGTCATAATATCTTTAATCCAATCTAAGAAATCTAAAATTAGATCTTTTACACTATTA +AAGTTAACAAAGGTATTACCCGGGTACGTGGATATCATATATGGTATTGGTCCATTATCAGTAATGGCTC +CATAAACTGATACGGCAATGGTTTTTATATGTGTTTGATCTAATGAGGACGAAATTCGCGCCCACAATTC +ATCTCTAGATATGCATTTAATATCGAACGGTAACACATCAATCTCGGGACGCGTATATGTTTCTAAATTC +TTAATCCAAATATAATGATGACCTATATGCCCTATTATCATACTGTCAACTATAGTATACCTAGAGAACT +TTCGATACATCTGCTGTTTCCTGTAATCGTTAAATTTTACAAATCTATAACATGCTAAACCTTTTGACGA +CAGCCATTCATTAATTTCTGATATGGAATCTGTATTCTTAATACCGTATCGTTCTAAAGCCAGTGCTATA +TCTCCCTGTTCGTGGGAACGCTTTCGTATAATATCGATCAATGGATAATATGAAGTTTTTGGAGAATAAT +ATGATTCATGATCTATTTCGTCCATAAACAATCTAGACATAGGAATTGGAGGCGATGATCTTAATTTTGT +GCAATGGGTCAATCCTATAACTTCTAATATTGTAATATTCATCATCGACATAACACTATCTATGTTATCA +TCGTATATTAGTATACCACGACCTTCTTCATTTCGTGCCAAAATGATATACAGTCTTAAATAATTACGCA +ATATCTCAATAGTTTCATAATTGTTAGCTGTTTTCATCAAGGTTTGTATCCTGTTTAACATGATGGCGTT +CTATAACGTCTCTATTTTCTATTTTTAATTTTTTTAAATTTTTAACGATTTACTGTGGCTAGATACCCAA +TCTCTTTCAAATATTTTTTTAGCCTTGCTTACAAGCTGTTTATCTATACTATTAAAACTGACGAATCCGT +GATTTTGGTAATGGGTTCCGTCGAAATTTGCCGAAGTGATATGAACATATTCGTCGTCGACTATTAACAA +TTTTGTATTATTCTGAATAGTGAAAACCTTCACAGATAGATCATTTTGAACACACAACGCATCTAGACTT +CTGGCGGTTGCCATAGAATATACGTCGTTCTTATCCCAATTACCAACTAGAAGTCTGATCTTAACTCCTC +TATTAATGGCTGCTTCTATAATGGAGTTGTAAATGTCAGGCCAATAGTAGCTATTACCGTCGACACGTGT +AGTGGGAACTATGGCCAAATGTTCAATATCTATACTAGTCTTAGCCGACTTGAGTTTATCAATAACTACA +TCAGTGTCTAGATCTCTAGAATATCCCAATAGGTGTTCTGGAGAATCAGTAAAGAACACTCCACCTATAG +GATTCTTAATATGATACGCAGTGCTAACTGGCAGACAACAAGCCGCAGAGCATAAATTCAACCATGAATT +TTTTGCGCTATTAAAGGCTTTAAAAGTATCAAATCTTCTACGAAGATCTGTGGCCAGCGGAGGATAATCA +GAATATACGCCTAACGTTTTAATCGTATGTATAGATCCTCCAGTAAATGACGCGTTTCCTACATAACATC +TTTCATCATCAGACACCCAAAAACAACCGAGTAGTAGTCCCACATTATTTTTTTTATCTATATTAACGGT +TATAAAATTTATATCCGGGGAGTGACTTTGTAGCTCTCCCAGATTTCTTTTCCCTCGTTCATCTAGCAAA +ACTATTATTTTAATCCCTTTTTCAGATACCTCTTTTAGTTTATCAAAAATAAGCGCTCCCCTAGTAGTAC +TCAGAGGATTACAACAAAAAGATGCTATGTATATATATTTCTTAGCTAGAGTGATAATTTCGTTAAAACA +TTCAAATGTTGTCAAATGATCGGATCTAAAATCCATATTTTCTGGTAGTGTTTCTACCAGCCTACATTTT +GCTCCCGCAGGTACCGATGCAAATGGCCACATTTAGTTAACATAAAAACTTATATATCCTGTTCTATCAA +CGATTCTAGAATATCATCGGCTATATCGCTAAAATTTTCATCAAAGTCGACATCACAACCTAACTCAGTC +AATATATTAAGAAGTTCCATGATGTCATCTTCGTCTATTTCTATATCCGTATCCATTGTAGATTGTTGAC +CGATTATCGAGTTTAAATCATTACTAATACTCAATCCTTCAGAATACAATCTGTGTTTCATTGTAAATTT +ATAGGCGGTGTATTTAAGTTGGTAGATTTTCAATTATGTATCAATATAGCAACAGTAGTTCTTGCTCCTC +CTTGATTTTAGCATCCTCTTCATTATTTTCTTCTACGTACATAATCATGTCTAATACGTTAGACAACACA +CCGACGATGGTGGCCGCCACAGACACGAATATGACTAGACCGATGACCATTTAAAAAATACTCTCTAGCT +TTAACTTAAACTGTATCGATCATTCTTTTAGCACATGTATAATATAAAAACATTATTCTATTTCGAATTT +AGGCTTCCAAAAATTTTTCATCCGTAAACCGATAATAATATATATAGACTTGTTAATAGTCGGAATAAAT +ATATTAATGCTTAAACTATCATCATCTCCACGATTAGAGATACAATATTTACATTCTTTTTGCTGTTTCG +AAACTTTATCAATACACGTTAATACAAACCCAGGAAGGAGATATTGAAACTGAGGCTGTTGAAAATGAAA +CGGCGAATACAATAATTCAGATAATGTAAAATCATGATTCCGTATTCTGATGATATTAGAACTGCTAATG +GATGTCGATGGTATGTATCTAGGAGTATCTATTTTAACAAAGCATCGATTTGCTAATATACAATTATCCT +TTTGATTAATTGTTATTTTATTCATATTCTTAAAAGGTTTCATATTTATCAATTCTTCTACATTAAAAAT +TTCCATTTTTAATTTATCTAGCCCCGCAATACTCCTCATTACGTTTCATTTTTTGTCTAGAATACCCATT +TTGTTCATCTTGGTACATAGATTATCCAATTGAGAAGCGCATTTAGTAGTTTTGTACATTTTAAGTTTAT +TAACGAATCGTCGAAAACTAGTTATAGTTAACATTTTATTATTTGATACCCTGATATTAATACCCCTGCC +GTTACTATTATTTATAACTGATGTAACCCACGTAACATTGGAATTAATTATCGATAGTAATGCATCGACA +CTTCCAAAATTGTCTATTATAAACTCACCGATAATTTTTTTATTGCATGTTTTCATATTCATTAGGATTA +TCAAATCTTTAATCTTATTACGATTGTATGCGTTGATATTACAAGACGTCATTCTAAAAGACGGAGGATT +TCCATCAAATGCCAGACAATCACGTACAAAGTACATGGAAATAGGTTTTGTTCTATTACGCATCATAGAT +TCATATAAAACACCCGTAGAAATACTAATTTGTTTTACTCTATAAAATACTATTGCATCTATTTCATCGT +TTTGTATAACGTCTTTCCAAGTGTCAAATTCCAATTTTTTTTCATTGATAGTACCAAATTCTTCTATCTC +TTTAACTACTTGCATAGATAGGTAATTACAGTGATGCCTACATGCCGTTTTTTGAAACTGAATAGATGCA +TCTAGAAGCGATGCTACACTAGTCACGATCACCACTTTCATATTTAGAATATATGTATGTAAAAATATAG +TAGAATTTCATTTTGTTTTTTTCTATGCTATAAATGAATTCTCATTTTGTATCCGCACATACTCCGTTTT +ATATCAATACCAAAGAAGGAAGATATCTGGTTCTAAAAGCCGTTAAAGTATGCGATGTTAGAACTGTAGA +ATGCGAAGGAAGTAAAGCTTCCTGCGTACTCAAAGTAGATAAACCCTCATCACCCACGTGTGAGAGAAGA +CCTTCGTCCCCGTCCAGATGCGAGAGAATGAATAACCCTGGAAAACAAGTCCCGTTTATGAGAACGGACA +TGTTACAAAATATGTTTGCTGCTAATCGCGACAACGTAACGTCAAGACTTTTGAACTAAAATACAATTAT +ATCTTTTTCGATATTAATAAATCCGTGTCTCCCGGGTTTTTTATCTCTTTCAGTATGTGAATAGATAGGT +ATTTTATCTCTATTCATCATCGAATTTAAGAGATCCGATAAACATTGTTTGTATTCTCCAGATGTCAGCA +TCTGATACAACAATATATGTGCACATAAACCTCTGGCACTTATTTCATGTACCTTCCCCTTATCACTAAG +GAGAATAGTATTTGAGAAATATGTATACATGATATTATCATGTATTAGATATACAGAATTTGTAACACTC +TCGAAATCACACGATGTGTCGGCGTTAAGATCTAATATATCACTCGATAACACATTTTCATCTAGATACA +CTAGACATTTTTTAAAGCTAAAATAGTCTTTAGTAGTAACAGTAACTATGCGATTATTTTCATCGATGAT +ACATTTCATCGGCATATTATTACGCGTACCATCAAAGACTATACCATGTGTATATCTAACGTATTCTAGC +ATAGTTGCCATACGTACATTAAACTTTTCAGGATCTTTGGATAGATCTTCCAATCTATCTATTTGAGAAA +ACATTTTTATCATGTTCAATAGTTGAAACGTCGGATCCACTATATAGATATTATCTATAAAGATTTTAGG +AACTATGTTCATGGTATCCTGGCGAATATTAAAACTATCAATGATATGATTATCGTTTTCATCTTTTATC +ACCATATAGTTTCTAAGATATGGGATTTTACTTAATATAATATTATTTCCCGTAATAAATTTTATTAGAA +ATGCCAAATCTATAAGAAAAGTCCTAGAATTAGTCTGAAGAATATCTATATCACCGTACCGTATATTTGG +ATTAATTAGATATAGAGAATATGATCCGTAACATATACAACTTTTATTATGACGTCTAAGATATTCTTCC +ATCAACTTATTAACATTTTTGACTAGGGAAGATACATTATGACGTCCCATTACTTTTGCCTTGTCTATTA +CAGCGACGTTCATAGAATTTAGCATATCTCTTGCCAATTCTTCCATTGATGTTACATTATAAGAAATTTT +AGATGAAATTACATTTGGAGCTTTAATAGTAAGAACTCCTAATATATCCGTGTATGTGGTCACTAATACA +GATTGTAGTTCTATAATCGTAAATAATTTACCTATATTATATGTTTGAGTTTGTTTAGAAAAGTAGCTAA +GTATACGATCTTTTATTTCTGATGCCGATGTATCAACATCGAAAAAAAATCTTTTTTTATTCTTTTTTAC +TAACGATACGAATATGTCTTTGTTAAAAACAGTTATTTTCTGAATATTTCTAGCTTGTAATTTTAACATA +TGATATTCGTTCACACTAGGTACTCTGCCTAAATAGGTTTCTATAATCTTTAATGTAATATTAGGAAGAG +TATTCTGATCAGGATTCCTATTCATTTTGAGGATTTAAAACTCTGATTATTGTCTAATATGGTCTCAACA +CAAACTTTTTCACAGAGTGATAGAGTTTTTGATAACTCGTTTTTCTTAAGAAATATAAAACTACTGTCTC +CAGAGCTCGCTCTATCTTTTATTTTATCTAATTCGATACAAACTCCTGATACTGGTTCAGAAAGTAATTC +ATTAATTTTCAGTCCTTTATAGAAGATATTTAATATAGATAATACAAAATCTTCAGTTCTTGATATCGAT +CTGATTGATCCTAGAACTAGATATATTAATAACGTGCTCATTAGGCAGTTTATGGCAGCTTGATAATTAG +ATATAGTATATTCCAGTTCATATTTATTAGATACCGCATTGCCCAGATTTTGATATTCTATGAATTCCTC +TGAAAATAAATCCAAAATAACTAGACATTCTATTTTTTGTGGATTAGTGTACTCTCTTCCCTCTATCATG +TTCACTACTGGTGTCCACAATGATAAATATCTAGAGGGAATATAATATAGTCCATATGATGCCAATCTAG +CAATGTCGAATAACTGTAATTTTATTCTTCGCTCTTCATTATGAATTGAATCTTGAGGTATAAACCTAAC +ACAAATTATATCATTAGACTTTTCGTATGTAATGTCTTTCATGTTATAAGTTTTTAATCCTGGAATAGAA +TCTATTTTAATGAGGCTTTTAAACGCAGCGTTCTCCAACGAGTCAAAGCATAATACTCTGTTGGTTTTCT +TATATTCAATATTACGATTTTCTTCTTTGAATGGAATAGGTTTTTGAATTAGTTTATAATTACAACATAA +TAGATAAGGAAGTGTGTAAATAGTACGCGGAAAAAACATAATAGCTCCCCTGTTTTCATCCATGGTTTTA +AGTAAATGATCACTGGCTTCTTTAGTCAATGGATATTCGAACATTAACCGTTTCATCATCATTGGACAGA +ATCCATATTTCTTAATGTAAAGAGTGATCAAATCATTGTGTTTATTGTACCATCTTGTTGTAAATGTGTA +TTCGGTTATCGGATCTGCTCCTTTTTCTATTAAAGTATCGATATCGATCTCGTCTAAGAATTCAACTATA +TCGACATATTTCATTTGTATACACATAACCATTACTAACGTAGAATGTATAGGAAGAGATGTAACGGGAA +CAGGGTTTGTTGATTCGCAAACTATTCTAATACATAATTCTTCTGTTAATACGTCTTGCACGTAATCTAT +TATAGATGCCAAGATATCTATATAATTATTTTGTAAGATGATGTTAACAATGTGATCTATATAAGTAGTG +TAATAATTCATGTATTTCGATATATGTTCCAACTCTGTCTTTGTGATGTCTAGTTTCGTAATATCTATAG +CGTCCTCAAAAAATATATTCGCATATATTCCCAAGTCTTCAGTTCTATCTTCTAAAAAATCTTCAACGTA +TGGAATATAATAATCTATTTTACCTCTTCTGATGTCATTAATGATATAGTTTTTGACACTATTTTCCGTC +AATTGATTCTTATTCACTATGTCTAAAAACCGGATAGCGTCCCTAGGACGAACTACTGCCATTAATATCT +CTATTATAGCTTCTGGACATAAATCATCTATTATACCAGAATTAATGGGAACTATTCCGTATCTATCTAA +CATAGTTTTAAGAAAGTCAGAATCTAAGACCTGATGTTCATATATTGGTTCATACATGAAATGATCTCTA +TTGATGATAGTGACTATTTCATTCTCTGAAAATTGGTAACTCATTCTATACACGCTTTCCTTGTTGATAA +AGGATAGTATATACTCAATGGAATTTGTACCAACAAACTGTTCTCTTATGAATCGTATATCATCATCTGA +AATGATCATGTAAGGCATACATTTAACAATAAGAGACTTGTCTCCTGTTATCAATATACTATTCTTGTGA +TAATTTATGTGTGCGGCAAATTTGTCCACGTTCTTTAATTTTGTTATAGTAGATATCAAATCCAATGGAG +ATACAGTTCTTGGCTTAAACAGATATAGTTTTTCTGGAACGAATTCTACAACATTATTATAAAGGACTTT +GGGTATATAAGTGGGATGAAATCCTATTTTAATTAATGCGATAGCCTTGTCCTCGTGCAGATATCCAAAC +GCTTTTGTGATAGTATGGCATTCATTGTCTAGAAACGCTCTACGAATATCTGTAACAGATATCATCTTTA +GAGAATACTAGTCGCGTTAATAGTACTAAAATTTGTATTTTTTAATCTATCTCAATAAAAAATTAATATG +TATGATTCAATGTATAACTAAACTACTAACTGTTATTGATAACTAGAATCAGAATCTAATGATGACATAA +CTAAGAAGTTTATCTACAGCCAATTTAGCTGCATTATTTTTAGCATCTCGTTTAGATTTTCCATCTGCCT +TATCGAATACTCTTCCGTCAATGTCTACACAGGCATAAAATGTAGGAGAGTTACTAGGCCCCACTGATTC +AATACGAAAAGACCAATCTCTCCTAGTTATTTGACAGTACTCATTAATAACGGTGACAGGGTTAACACCT +TTCCAATAAATAATTTTTTTAACCGGAATAACATCATCAAAAGACTTATGATCCTCTCTCATTGATTTTT +CGCGGGATACATCATCTATTATAGCATCAGCATCAGAATCTGTAGGCCGTGTATCAGCATCCATTGTCGT +AGACCAACGAGGAGGAGTATCGTTGGAGCTGTAAACCATAGCACTACGTTGAAGATCATACAGAGCTTTA +TTAACTTCTCGCTTCTCCATATTAAGTTGTTTAGTTAGTTGTACAGCAGTAGCTCCTTAGTCCAATGTTT +TTAATAACCGCACACAATCTCTGTGTCAGAACGCTCGTCAATATAGATCTTAGAAATTTTTTTAGAGAGA +ACTAACGCAACTAGCAATAAAACTGATCTTATTTTATCATTTTTTTTATTCATCATCCTCTGGTGGTTCG +TCGTTCCTATCGAATGTAGCTCTGATTAACCCGTCATCTATAGGTGATGCTGGTTCTGGAGATTCTGGAG +GAGATGGATTATTATCTGGAAGAATCTCTGTTATTTCCTTGTTTTCATGTATCGATTGCGTTGTAACATT +AAGATTGCGAAATGCTCTAAATTTGGGAGGCTTAAAGTGTTGTTTACAATCTCTACACGCGTGTCTAACT +AATGGAGGTTCATCAGCGGCTCTAGTTTGAATCATCATCGGTGTAGTATTCCTACTTTTACAGTTAGGAC +ACGGTGTATTGTATTTCTCGTCGAGAACGTTAAAATAATCGTTGTAACTCACATCCTTTATTTTATCTAT +ATTGTATTCTACTCCTTTCTTAATGCATTTTATACCGAACAAGAGATAGCGAAGGAATTCTTTTTCGGTA +CCGCTAGTACCCTTAATCATATCACATAGTGTTTTATATTCTAAATGTGTGGCAATGGACGGTTTATTTC +TATACGATAGTTTGTTTTTGGAATCCTTTGAGTATTCTATACCAATATTATTCTTTGATTCGAATTTAGT +TTCTTCGATATTAGATTTTGTATTACCTATATTCTTGATGTAGTACTTTGATGATTTTTCCATGGCCCAT +TCTATTAAGTTTTCCAAGTTGGCATCATCCACATATTGTGATAGTAATTCTCGGATATCAGTAGTGACTA +CCGCCATTGATATTTGTTCATTTGATGAGTAACTACTAATGTATACATTTTCCATTTATAACACTTATGT +ATTAACTTTGTTTATTTATATTTTTTCATTATTATGTTGATATTAATAATCGTATTGTGGTTATATGGCT +ACAATTTCATAATGAGTTGAAGTCAGTGTCCTATGATCAATGACGATAGCTTTACTCTGAAAAGAAAGTA +TCAAATCGATAGTGCAGAGTCAACAATGAAAATGGATAAGACGATGACAAAGTTTCAGAATAGAGTCAAA +ATGGTAAAAGAAATAAATCAGACGATAAGAGCAGCACAAACTCATTACGAGACATTGAAACTAGGATATA +TAAAATTTAAGGGAATGATTAGGACTACTACTCTAGAAGATATAGCACCATCTATTCCAAATAATCAGAA +AACTTATAAACTATTCTCGGACATTTCAGTCATTGGCAAAGCATCACAGAATCCGAGTAAGATGATATAT +GCTCGCTGCTTTACATGTTTCCCAATTTGTTTGGAGATGACCATAGATTCATTTGTTATAGAATGCATCC +AACATTGTTCATGATATAGTTGAATCATGTATGCCTGTTCGTATGCCTGTGGCTAAGATACTGTGTAAAG +AAATGGTAAATAAATACTTTGAGAATCTTTAAGAGTGCATTGACTTTGTTAGTGAATAGGCATTCCATCT +TTCTCCAATACTAATTCAAATTGTTAAATTAATAATGGAATAGTATAAATAGTTATTAGTGATAGGATAG +TAAACATAATTATTAGAATAGTAGTGTAGTATCATAGATAACTCTCTTCTATAAAAAATGGATTTTATTC +GTAGAAAGTATCTTATATACACAGTAGAAAATAATATAGATTTTTTAAAGGATGATACATTAAGTAAAGT +AAACAATTTTACCCTCAATCATGTACTAGCTCTCAAGTATCTAGTTAGCAATTTTCCTCAACATGTTATT +ACTAAGGATGTATTAGCTAATACCAATTTTTTTGTTTTCATACATATGGTACGATGCTGTAAAGTATACG +AAGCGGTTTTACGACACGCATTTGATGCACCCACGTTGTACGTTAAAGCATTGACTAAGAATTATTTATC +GTTTAGTAACACAATACAGTCGTACAAGGAAACAGTGCATAAACTAACACAAGATGAAAAATTTTTAGAG +GTTGCCGAATACATGGACGAATTAGGAGAACTTATAGGCGTAAATTATGACTTAGTTCTTAATCCATTAT +TTCACGGAGGGGAACCCATCAAAGATATGGAAATCATTTTTTTAAAACTGTTTAAGAAAACAGACTTCAA +AGTTGTTAAAAAATTAAGTGTTATAAGATTACTTATTTGGGCATACCTAAGCAAGAAAGATACAGGCATA +GAGTTTGCGGATAATGATAGACAAGATATATATACTCTATTTCAACAAACTGGTAGAATAGTCCATAGCA +ATCTAACAGAAACGTTTAGGGATTATATCTTTCCCGGAGATAAGACTAGCTATTGGGTGTGGTTAAACGA +AAGTATAGCTAATGATGCGGATATCGTTATTAATAGACCCGCCATTACCATGTATGATAAAATTCTTAGT +TATATATACTCTGAGATAAAACAGGGACGCGTTAATAAAAACATGCTTAAGTTAGTTTATATCTTTGAGC +CTGAAAAAGATATCAGAGAACTTCTGCTAGAAATCATATATGATATTCCTGGAGATATCCTATCTATTAT +TGATGCAAAAAACGACGATTGGAAAAAATATTTTATTAGTTTTTACAAAGCTAATTTTATTAACGGTAAT +ACATTTATTAGTGATAGAACGTTTAACGATGACTTATTCAGAGTTGTTGTTCAAATAGATCCCGAATATT +TCGATAATGAACGAATTATGTCTTTATTCTATACGAGTGCTGCGGACATTAAACGATTTGATGAGTTAGA +TATTAATAACAGTTATATATCTAATATAATTTATGAGGTGAACGATATCACATTAGATACAATGGATGAT +ATGAAGAAGTGTCAAATCTTTAACGAGGATACGTTGTATTATGTTAAGGAATACAATACATACCTGTTTT +TGCACGAGTCGGATCCCATGGTCATAGAGAACGGAATACTAAAGAAACTGTCATCTATAAAATCCAAGAG +TAGACGGCTGAACTTGTTTAGCAAAAACATTTTAAAATATTATTTAGACGGACAATTGGCTCGTCTAGGT +CTTGTGTTAGATGATTATAAAGGAGACTTATTAGTTAAAATGATAAACCATCTCAAATCTGTGGAGGATG +TATCCGCATTCGTTAGATTTTCTACAGATAAAAACCCTAGTATTCTTCCATCGCTAATCAAAACTATTTT +AGCTAGTTATAATATTTCCATCATCGTCTTATTTCAAAGGTTTTTAAGAGATAATCTATATCATGTAGAA +GAATTCTTGGATAAAAGCATCCATCTAACCAAGACGGATAAGAAATATATACTTCAATTGATAAGGCACG +GTAGATCATAGAACAAACCAAATATATTATTAATAATTTGTATATACATAGATATAATTATCACATATTA +AAAAATAACACATTTTTGATAAATGGAAACCGTTGCAACAATTCAGACTCCCACCAAATTAATGAATAAA +GAAAATGCAGAAATGATTTTGGAAAAAATTGTTAATCATATAGCTATGTATATTAGTGACGAATCAATAT +ATTCAGAAAATAATCCTGAATATATTGATTTTCGTAACAGATACGGAGACTATAGATCTCTCATTATAAA +AAGTGATCACGAGTTTGTAAAGCTATGTAAAGATCATGCAGAGAAAAGTTCTCCAGAAACGCAACAAATG +ATTATCAAACACATATACGAACAATATCTTATTCCAGTATCTGAAGTACTATTAAAACCTATAATGTCCA +TGGGTGACATATTTACATATAACGGATGTAAAGACAATGAATGGATGCTAGAACAACTCTCTACCCTAAA +CTTTAACAATCTCTACACATGGAACTCATGTAGCATAGGCAATGTAACGCGTCTGTTTTATACATTTTTT +AGTTATCTGATGAAAGATAAACTAAATATATAAGTATAATCCCATTCTAATACTTTAACCTGATGTATTA +TTACCTGCATCTTATTAGAATATTAACCTAACTAAAAGACATAAAAAGCGGTAGGATATAAATATTATGG +CCGCAACCGTTCCGCGTTTTGACGATGTGTACAAAAATGCACAAAGAAGAATTCTAGATCAAGAAACATT +TTTTAGTAGAGGTCTAAGTAGACCGTTAATGAAAAACACATATCTATTTGATAATTACGCGTATGGATGG +ATACCAGAAACTGCAATTTGGAGTAGTAGATACGCAAACCTAGATGCTAGTGACTATTATCCCATTTCGT +TGGGATTACTTAAAAAGTTTGAATTTCTCATGTCTCTATATAAAGGTCCTATTCCCGTATATGAAGAAAA +AGTAAATACTGAATTCATTGCTAATGGATCTTTCTCCGGTAGATACGTATCATATCTTAGAAAGTTTTCT +GCCCTTCCAACAAACGAGTTTATTAGTTTTTTATTATTGACCTCCATCCCTATCTATAATATCTTATTCT +GGTTTAAAAACACACAGTTTGATATTACTAAACACACATTATTCAGATACGTCTATACAGATAATACCAA +ACACCTTGCGTTGGCTAGGTATATACATCAAACAGGAGACTATAAGCCTTTGTTTAGTCGTCTCAAAGAG +AATTATATATTTACTGGTCCCGTTCCAATAGGTATCAAAGATATAGATCACCCTAATCTTAGTAGAGCAA +GAAGTCCATCCGATTATGAGACATTAGCTAATATTAGTACTATATTGTACTTTACCAAGTATGATCCAGT +ATTAATGTTTTTATTGTTTTACGTACCTGGGTATTCAATTACTACAAAAATTACTCCAGCCGTAGAATAT +CTAATGGATAAACTGAATCTAACAAAGAGCGACGTACAACTGTTGTAAATTATTTTATGCTTCGTAAAAT +GTAGGTCTTGAACCAAACATTCTTTGAAAAAATGAGATGCATAAAACTTTATTATCCAATAGATTAACTA +TTTCAGACGTCAATCGTTTAAAGTAAACTTCGTAAAATATTCTTTGATTGCTGCCGAGTTTAAAACTTCT +ATCGATAATTGTTTCATATGTTTTAATATTTACAAGTTTTTTGGTCCATGGTACATTAGCTGGACAGATA +TATGCAAAATAATATCGTTCTCCAAGTTCTATAGTCTCTGGATTGTTTTTATTATATTCAGTAACCAAAT +ACATATTAGGGTTATCTGCGGATTTATAATTTGAGTGATGCATTCGACTCAACATAAATAATTCTAGAGG +AGACGATCTACTATCAAATTCGGATCGTAAATCTGTTTCTAAAGAACGGAGAATATCTATACATACCTGA +TTAGAATTCATCCGTCCTTCAGACAACATCTCAGACAGTCTGGTCTTGTATGTCTTAATCATATTCTTAT +GAAACTTGGAAACATCTCTTCTAGTTTCACTAGTACCTTTATTAATTCTCTCAGGTACAGATTTTGAATT +CGACGATGCCGAGTATTTCATCGTTGTATATTTCTTCTTCGATTGCATAATCAAATTCTTATATACCGCC +TCAAACTCTATTTTAAAATTATTAAACAATACTCTACTATTAATCAGTCGTTCTAACTCCTTTGCTATTT +CTATGGACTTATCTACATCTTGACTGTCTATCTCTGTAAACACGGAGTCGGTATCTCCATACACGCTACG +AAAACGAAATCTATAATCTATAGGCAACGATGTTTTCACAATCGGATTAATATCTCTATCGTCCATATAA +AATGGATTACTTAATGTATTGGCAAACCGTAACATACCGTTGGATAACTCTGCTCCATTTAGTACCGATT +CTAGATACAATATCATTCTACGTCCTATGGATGTGCAACTCTTAGCCGAAGCGTATGAGTATAGAGCACT +ATTTCTAAATCCCATCAGACCATATACTGAGTTGGCTACTATCTTGTACGTATATTGCATGGAATCATAG +ATGGCCTTTTCAGTTGAACTGGTAGCCTGTTTTAACATCTTTTTATATCTGGCTCTCTCTGCCAAAAATG +TTCTTAATAGTCTAGGAATGGTTCCTTCTATTGATCTATCGAAAATTGCTATTTCAGAGATGAGGTTCGG +TAGTCTAGGTTCACAATGAACCGTAATATATCTAGGAGGTGGATATTTCTGAAGCAAGAGTTGATTATTT +ATTTCTTCTTCCAATCTATTGGTACTAACAACGACACCGACTAATGTTTCCGGAGATAGATTTCCAAAGA +TACACACATTAGGATACAGACTGTTATAATCAAAGATTAATACATTATTACTAAACATTTTTTGTTTTGG +AGCAAATACCTTACCGCCTTCATAAGGAAACTTTTGTTTTGTTTCTGATCTAACTAAGATAGTTTTAGTT +TCCAACAATAGCTTTAACAGTGGACCCTTGATGATTGTACTCGCTCTATATTCGAATACCATGGATTGAG +GAAGCACATATGTTGCCGCACCAGCGTCTGTTTTTGTTTCTACTCCATAATACTCCCACAAATACTGACA +CAAACAAGCATCATGAATACAGTATCTAGCCATATCTAAAGCTATGTTTAGATTATAATCCTTATACATC +TGAGCTAAATCAATGTCATCCTTTCCGAAAGATAATTTATATATATCATTAGGTAAAGTAGGACATGATA +GTACGACTTTAAATCCATTTTCCAAAATATCTTTACGAATTACTTTACATATAATATCCTCATCAACAGT +CACGTAATTACCTGTGGTTAAAACCTTTGCAAATGTATCGGCTTTGCCTTTCGCGTCCGTAGTATCGTCA +CCGATGAACGTCATTTCTCTAACTCCTCTATTTAATACTTTACCCATGCAACTGAACGCGTTCTTGGATA +TAGAATCCAATTTGTACGAATCCAATTTTTCAGATTTTTGAATGAATGAATATAGATCGAAAAATATAGT +TCCATTATTGTTATTAACGTGAAACGTAGTATTGGCCATGCCGCATACTCCCTTATGACTAGACTGATTT +CTCTCATAAATACAGAGATGTACAGCTTCCTTTTTGTCTGGAGATCTAAAGATAATCTTCTCTCCTGTTA +ATAACTCTAGACGATTAGTAATATATCTCAGATCAAAGTTATGTCCGTTAAAGGTAACGACGTAGTCGAA +CGTTAGTTCCAACAATTGTTTAGCTATTCGTAACAAAACTATTTCAGAACATAGAACTAGTTCTCGTTCG +TAATCCATTTCCATTAGCGACTGTATCCTCAAACATCCTCTATCGACGGCTTCTTGTATTTCCTGTTCCG +TTAACATCTCTTCATTAATGAGCGTAAACAGTAATCGTTTACCACTTAAATCGATATAACAGTAACTTGT +ATGCGAGATTGGGTTAATAAATACAGAAGGAAACTTCTTATCGAAGTGACACTCTATATCTAGAAATAAG +TACGATCTTGGGATATCGAATCTAGGTATTTCTTTAGCGAAACAGTTACGTGGATCGTCACAATGATAAC +ATCCATTGTTAATCTTTGTCAAATATTGCTCGTCCAACGAGTAACATCCGTCTGGAGATATCCCGTTAGA +AATATAAAACCAACTAATATTGAAAAATTCATCCATGGTGGCATTTTGTATGCTGCGTTTCTTTGGCTCT +TCTATCAACCACATATCTGCGACGGAGCATTTTCTATCTTTAATATCTAGATTATAACTTATTGTCTCGT +CAATGTCTATAGTTCTCATCTTTCCCATCGGCCTCGCATTAAATGGAGGAGGAGATAATGACTGATATAT +TTCGTCCGTCACTACGTAATAAAAGTAATGAGGAAATCGTATAAATACGGTCTCGCCATTTCGACATCTG +GATTTCAGATATAAAAATCTGTTTTCACCGTGACTTTCAAACCAATTAATACACCTAACATCCATTTCTA +GAATTTAGAAATATATTTTCATTTAAATGAATCCCAAACATTGGGGAAGAGCCGTATGGACCATTATTTT +TATAGTACTTTCGCAAGCGGGTTTAGACGGCAACATAGAAGCGTGTAAACGAAAACTATATACTATAGTC +AGCACTCTTCCATGTCCTGCATGTAGACGACACGCGACTATCGCTATAGAGAACAATAATGTCATGTCTA +GCGATGATCTGAATTATATTTATTATTTTTTCATCAGATTATTTAACAATTTGGCATTTGATCCCAAATA +CGCAATCGATGTGTCAAAGGTTAAACCTTTATAAACTTAACCCATTATAAAACTTATGATTAGTCACGAC +TGAAATAACCGCGTGATTATTTTTTGGTATAATTCTACACGGCATGGTTTCTGTGACTATGAATTCAACA +CCTGTTATCTTAGTGAAATCTTTAACAAACAGCAAGGGTTCGTCAAAGACATAAAACTCATTGTTTACGA +TCGAAATAGACCCCCTATCACACTTAAAATAAAAAATATCCTTATCCTTTACCACCAAATAAAATTCTGA +TTGGTCAATGTGAATGTATTCACTTAACAGTTCCACAAATTTATTTATTAACTCCGAGGCACATACATCG +TCGGTATTTTTTATGACAAACTTTACTCTTCCAGCATCCGTTTCTAAAAAAATATTAACGAGTTCCATTT +ATATCATCCAATATTATTGAAATGACGTTGATGGACAGATGATATAAATAAGAAGGTACAGTACCTTTGT +CCACCATCTCCTCCAATTCATACTCTATTTTGTCATTAACTTTAATGTGTGAAAACAGTACGCCACATGC +TTCCATGACAGTGTGTAACACTTTGGATACAAAATGTTTGACATTAGTATAATTGTCCAAGACTGTCAAT +CTATAATAGATAGTAGCTATAATATATTCTATGATGGTATTGAAGAAGATGACAACCTTGGCATATTGAT +CATTTAACACAGACATGGTATCAACAAATAGCTTAAATGAAAGAGAATCAGTAATTGGAATAAGCGTCTT +CTCGATGTAGTGTCCGTATACCAACATGTCTGATATTTTGATGTATTCCATTAAATTATTTAGTTTTTTC +TTTTTATTCTCGTTAAACAGAATTTCTGTCAATGGACCCCAACATCGTTGACCTATTAAGTTTTGATTGA +TTTTTCCGTGTAAGGCGTATCTAGTCAGATCGTATAGCCTATCCAATAATCCATCGTCTGTGCGTAGATC +ACATCGTACACTTTTTAATTTTCTATAGAAGAGTGACAGACATCTGGAGCAATTACAGACAGCAATTTCT +TTATTCTCTACAGATGTAAGATACTTGAAGATATTCCTATGATGATGCAGAATTTTGGATAACACGGTAT +TGATGGTATCTGTTACCATAATTCCTTTGACTGATAGTGTCAAAGTACAAGATTTCCAATCTTTTGCAAT +TTTCAGTACCATTATCTTTGTTTTGATATCTATATCAGACAGCATGGTACGTCTGACAACACAGGGATTA +AGACGGAAAGATGAAATGATTCTCTCAACATCTTCAATAGATACCTTGCTATTTTTTTTGGCATTATCTA +TATGTGAGAGAATATCCTCTAGAGAATCAGTATCCTTTTTGATGATAGTGGATCTCAATGACATGGGACG +TCTAAACCTTCTTATTCTATCACCAGATTGCATGGTGATTTGTCTTCTTTCTTTTATCATGATGTAATCT +CTAAATTCATCGGCAAATTGTCTATATCTAAAATCATAATATGAGATGTTTACCTCTACAAATATCTGTT +CGTCCAATGTTAGAGTATCTATATCAGTTTTGTATTCCAAATTAAACATGGCAACGGATTTAATTTTATA +TTCCTCTATTAAGTCCTCGTCGATAATAACAGAATGTAGATAATCATTTAATCCATCGTACATGGTTGGA +AGATGCTCGTTGACAAAATCTTTAATTGTCTTGATGAAGGTGGGACTATATCTAACATCTTGATTAATAA +AATTTATAACATTGTCCATAGGATACTTTGTAACTAGTTTTATACACATCTCTTCATTGGTAAGTTTAGA +CAGAATATCGTGAACAGGTGGTATATTATATTCATCAGATATACGAAGAATAATGTCCAAATCTATATTG +TTTAATATATTATATAGATGTAGTGTAGCTCCTACAGGAATATCTTTAACTAAGTCAATGATTTCATCAA +CAGTTAGATCTATTTTAAAGTTAATCATATAGGCATTGATTTTTAAAAGGTATGTAGCCTTGACTACATT +CTCATTAATTAACCATTCCAAGTCACTGTGTGTAAGAAGATTATATTCTATCATAAGCTTGACTACATTT +GGTCCCGATACCATTAAAGAATTCTTATGATATAAGGAAACAGCTTTTAGGTACTCATCTACTCTACAAG +AATTTTGGAGAGCCTTAACGATATCAGTGACGTTTATTATTTCAGGAGGAAAGAACCTAACATTGAGAAT +ATCTGAATTAATAGCTTCCAGATACAGTGATTTTGGCAATAGTCCGTGTAATCCATAATCCAGTAACACG +AGCTGGTGCTTGCTAGACACCTTTTCAATGTTTAATTTTTTTGAAATAAGCTTTGATAAAGCCTTCCTCG +CAAATTCCGGATACATGAACATGTCGCCAACATGATTAAGTATTGTTTTTCATTATTTTTATATTTTCTC +AACAAGTTCTCAATACCCCAATAGATAATAGAATATCACCCAATGCGTCCATGTTGTCTATTTCCAACAG +GTCGCTATATCCACCAATAGAAGTTTTCCCAAAAAAGATTCTAGGAACAGTTCTACCACCAGTAATTTGT +TCAAAATAGTCACGCAATTCATTTTCGGGTTTAAATTCTTTAATATCTACAATTTCATACGCTCCTCTTT +TGAAACTAAACTTATTTAGAATATCCAGTGCGTTTCTACAAAAAGGACATGTAAACTTGACAAAAATTGT +CACTTTGTTATTGGCCAACCTTTGTTGTACAAATTCCTCGGCCATTTTTAATATTTAAGTGATACAAAAC +TATCTCGACTTATTTAACTCTTTAGTCGAGATATATGGACACAGATAGCTATATGATAACCAACTACAGA +AGACAAACGCTATAAAAAACATAATTACGACGAGCATATTTATAAATATTTTTATTCAGTATTACTTGAT +ATAGTAATATTAGGCACAGTCAAACATTCAACCACTCTAGATACATTAACTCTCTCATTTTCTTTAACAA +ATTCTGCAATATCTTCGTAAAAAGATTCTTGAAACTTTTTAGAATATCTATCGACTCTAGATGAAATAGC +GTTCGTCAACATACTATGTTTTGTATACATAAAGGCGCCCATTTTAACAGTTTCTAGTGACAAAATGCTA +GCGATCCTAGGATCCTTTAGAATCACATAGATTGACGATTCGTCTCTCTTAGTAACTCTAGTAAAATAAT +CATACAATCTAGTACGCGAAATAATATTATCCTTGACTTGAGGAGATCTAAACAATCTAGTTTTGAGAAC +ATCGATAAGTTCATCGGGAATTACATACATACTATCTTTAATAGAACTCTTTTCATCCAGTTGAATGGAT +TCGTCCTTAACCAACTGATTAATGAGATCTTCTATTTTATCATTTTCTAGATGATATGTATGTCCATTAA +AGTTAAATTGTGTAGCGCTTCTTTTTAGCCTAGCAGCCAATACTTTAACATCACTAATATCGATATACAA +AGGAGATGATTTATCGATGGTATTAAGAATTCGTTTTTCGACATCCGTCAAAACCAATTCCTTTTTGCCT +GTATCATCCAGTTTGCCATTCTTTGTAAAGAAATTATTTTCTACTAGACTATTAATAAGACTGATAAGGA +TTCCTCCATAATTGCACAATCCAAACTTTTTCACAAAACTAGACTTTACGAGATCTACAGGAATGCGTAC +TTCAGGTTTCTTAGCTTGTGATTTTTTCTTTTGTGGACATTTTCTAGTGACCAACTCATCTACCATTTCA +TTGATTTTAGCAGTGAAATAAGCTTTCAATGCACGGGCACTGATACTATTGAAAACGAGTTGATCTTCAA +ATTCCGCCATTTAAGTTCACCAAACAACTTTTAAATACAAATATATCAATAGTAGTAGAATAAGAACTAT +AAAAAAAATAATAATTAACCAATACCAACCCCAACAACCTGTATTATTAGTTGATGTGACAGTTTTCTCA +TCACTTAGAACAGATTTAACAATTTCTATAAAGTCTGTCAAATCATCTTCCTGAGAACCCATAAATACAC +CAAATATAGCAGCGTACAACTTATCCATTTATACATTGAATATTGGCTTTTCTTTATCGCTATCTTCATC +ATATTCATCATCAATATCAACAAGTCCCAGATTACGAACCAGATCTTCTTCTACATTTTCAGTCATTGAT +ACGCGTTCACTATCTCCAGAGAGTCCGATAACGTTAGCCACTACTTCTCTATCAATGATTAGTTTCTTGA +GCGCGAATGTAATTTTTGTTTCCGTTCCGGATCTATAGAAAACTACAGGTGTAATAATTGCCTTGGCTAA +TTGTCTTTCTCTTTTACTGAGTGATTCTAGTTCACCTTCTATAGATCTGAGAATGGATGATTCTCCAGTC +GAAACATATTCTACCATGGCTCCGTTTAATTTGTTGATGAAGATGGATTCATCCTTAAATGTTTTCTCTG +TAATAGTTTCCGCCGAAAGACTATGCAAAGAATTTGGAATGCGTTCCTTGTGTGTAATGTTTCCATAGAC +AGCTTCTAGAAGTTGATACAACATAGGACTAGCCGCGGTAACTTTTATTTTTAGAAAGTATCCATCGCTT +CTATCTTGTTTAGATTTATTTTTATAAAGTTTAGTCTCTCCTTCCAACATAATAAAAGTGGAAGTCATCT +GACTAGATAAACTATCAGTAAGTTTTATAGAGATAGATGAACAATTAGCGTATTGAGAAGCATTTAGTGT +AACGCATTCGATACATTTTGCATTAGATTTACTAATCGATTTTGCATACTCTATAACACCCGCACAAGTC +TGTAGAGAATCGCTAGATGCTGTAGGTCTTGGTGAAGTTTCAACTCTCTTCTTGATTACCTTACTCATGA +TTAAACCTAAATAATTGTACTTTGTAATATAATGATATATATTTTCACTTTATCTCATTTGAGAATAAAA +ATGTTTTTGTTAACCACTGCATGATGTACAGATTTCGGAATCGCAAACCACTTGTGGTTTTATTTTATCC +TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGAC +CGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCAT +AGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC +CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTACCA +TAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAAC +TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTA +TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG +TTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACATTCCAAAGATCATATTG +TAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAA +CTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTAT +CAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT +CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA +ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACAAACATGTTCAATGCAA +CAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT +ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA +GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATACATTTGTATC +TCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA +TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA +AGAGCTATAAATAGATCTCTTGTTCTATGTTCATCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA +TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT +GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG +ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG +CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA +CATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT +AGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT +GCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA +ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATA +TCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT +CCATCACTTCACTAAATAGTTTTTTTGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAAT +GGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT +GTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTA +AGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCG +TTTAATGACAAACATTTTTGTTGGTGTAATAAAAAAAATTATTTAATTTTTCATTAATAGGGATTTGACG +TATGTAGCGTACAAAATTATCGTTCCTGGTATATAGATAAAGAGTCCTATATATTTGAAAATCGTTACGG +TTCGATTAAACTTTAATGATTGCATTGTGAATATATCATTAGGATTTAACTCCTTGACTATCATGGCGGT +GCCAGAAATTACCATCAAAAGCATTAATACAGTTATGCAGATCGCAGTTAGAACGGTTATAGCATCCACC +ATTTATATCTAAAAATTAGATCAAAGAATATGTGACAACGTCCTAGTTGTATACTGAGAATTGACGAAAC +AATGTTTCTTACATATTTTTTTCTTATTAGTAACCGACTTAATAGTAGGAACTGGAAAACTAGACTTGAT +TATTCTATAAGTATAGATACCCTTCCAAATAATGTTCTCTTTGATAAAAGTTCCAGAAAATGTAGAATTT +TTTAAAAAGTTATCTTTTGCTATTACTAATATCGTGGTTAGACGCTTATTATTAATATGAGTGATGAAAT +CCACACCGCTTCTAGATATCGCTTTTATTTCCACATTAGATGGTAAATCCAATAGTGAAACTATCTTTTT +AGGAATGTATGGACTCGCGTTTAGAGGAGTGAACGTCTTCGGAGTAGTAAAGGATGATTCGTCAAATGAA +TAAACAATTTCACAAATGGATGTTAATGTATTAGTAGGAAATTTTTTGACGCTAGTGGAATTGAAGATTC +TAATGGATGATGTTCTACCTATTTCATCCGATAACATGTTAATTTCCAATACCAACGGTTTTAATATTTC +GATGATATACGGTAGTCTCTCTTTCGGACTTATATAGCTTATTCCACAATACGAGTCATTATATACTCCA +AAAAACAAAATAACTAGTATAAAATCTGTATCGAATGGGAAAAACGAAATTATCGATATAGGTATAGAAT +CCGGAACATTGAACGTATTAATACTTAATTCTTTTTCAGTGGTAAGAACCGATAGGTTATTGACATTGTA +TGGTTTTAAATATTCTATAACTTGAGACTTGATAGATATTAATGACGAATTGAAAATTATTTTTATCACC +ACGTGTGTTTCAGGATCATCGTCGACGCCAGTTAACCAACCGAATGGAGTAAAATAAATATCATTAATAT +ATGCTCTAGATATTAGTATTTTTATTAATCCTTTGATTATCATCTTCTCGTACGCGAATGATTCCATGAT +CAAGAGTGATTTGAGAACATCCTCCGGAGTATTAATGGGTTTAGTAAACAGTCCATCGTTGCAATAATAA +AAGTTGTCCAAGTTAAAGGATATTATGCATTCGTTTAAAGATATCACCTCATCTAACGGAGACAATTTTT +TGGTAGGTTTTAGAGACTTTGAAGCTACTTGTTTAACAAAGTTATTCATCGTCGTCTACTATTCTATTTA +ATTTTGTAGTTAATTTATCACATATCACATTAATTGACTTTTTGGTCCACTTTTCCATACGTTTATATTC +TTTTAATCCTGCGTTATCCGTTTCCGTTATATACAGGGATAGATCTTGCAAGTTAAATAGAATGCTCTTA +AATAATGTCATTTTTTTATCCGCTAAAAATTTAAAGAATGTATAAACTTTTTTCAAAGATTTAAAACTTT +TAGGTGGAGTTCTGGTACACAATATCATAAACAAACTAATAAACATCCCACATTCAGATTCCAACAATTG +ATTAACTTCCACATTAATACAGCCTATTTTCGCTCCAAATGTACATTCGAAAAATCTGAATAAAACATCA +ATATCGCAATTTGTATTATCCAATACAGAATGTCTGTGATTCGTGTTAAAACCATCGGAAAAAGAATAGA +AATAAAAATTATTATAATGGTGGAATTCAGTTGGAATATTGCCTCCGGAGTCATAAAAGGATACTAAACA +TTGTTTTTTATCGTAAATTACACATTTCCAATGAGACAAATAACAAAATCCAAACATTACAAATCTAGAG +GTAGAACTTTTAATTTTGTCTTTAAGTATATACGATAAGATATGTTTATTCATAAACGCGTCAAATTTTT +CATGAATAGCTAAGGAGTTTAAGAATCTCATGTCAAATTGTCCTATATAATCCACTTCGGATCCATAAGC +AAACTGAGAGACTAAGTTCTTAATACTTCGATTGCTCATCCAGGCTCCTCTCTCAGGCTCTATTTTCATC +TTGACGACCTTTGGATTTTCACCAGTATGTATTCCTTTACGTGATAAATCATCAATTTTCAAATCCATTT +GTGAGAAGTCTATCGCCTTAGATACTTTTTCCCGTAGTTGAGGTTTAAAGAAATACGCTAACGGTATACT +AGTAGGTAACTCAAAGACATCATATATAGAATGGTAACGCGTCGTTAACTCGTCGGTTAACTCTTTCTTT +TGATCGAGTTCATCGCTACTATTGGGTCTGCTCAGGTGCCCCGACTCTACTAGTTCCAACATCATACCGA +TAGGAATACAAGACACTTTGCCAGCGGTTGTAGATTTATCATATTTCTCCACCACATATCCGTTACAATT +TGTTAAGAATTTAGATACATCTATATTGCTACATAATCCAGCTAGTGAATATATATGACATAATAAATTG +GTAAATCCTAGTTCTGGTATTTTACTAATTACTAAATCTGTATATCTTTCCATTTATCATGGAAAAGAAT +TTACCAGATATCTTCTTTTTTCCAAACTGCGTTAATGTATTCTCTTACAAATATTCACAAGATGAATTCA +GTAATATGAGTAAAACGGAACGTGATAATTTCTCATTGGCTGTGTTTCCAGTGATAAAACATAGATGGCA +TAACGCACACGTTGTAAAACATAAAGGAATATACAAAGTTAGTACAGAAGCACGTGGAAAAAAAGTATCT +CCTCCATCACTAGGAAAACCCGCACATATAAACCTAATGTCGAAGCAATATATATATAGTGAGTATGCAA +TAAGCTTTGAATGTTATAGTTTTCTAAAATGTATAACAAATACAGAAATCAATTCGTTCGATGAGTATAT +ATTAAGAGGACTATTAGAAGCTGGTAATAGTTTACAGATATTTTCCAATTCCGTAGGTAAACGAATAGAT +ACTATAGGTGTACTAGGGAATAAGTATCCATTTAGCAAAATTCCATTGGCCTCATTAACTCCTAAAGCAC +AACGAGAGATATTTTTAGCGTGGATTTCTCATAGACCTGTAGTTTTAACTGGAGGAACCGGAGTGGGTAA +GACGTCACAGGTACCCAAGTTATTGCTTTGGTTTAATTATTTATTTGGTGGATTCTCTTCTCTAGATAAA +ATCACTGACTTTCACGAAAGACCAGTCATTCTATCTCTTCCTAGGATAGCTTTAGTTAGATTGCATAGCA +ATACCATTTTAAAATCATTGGGATTTAAGGTACTAGATGGATCTCCTATCTCTTTACGGTACGGATCTAT +ACCGGAAGAATTAATAAACAAACAACCAAAAAAATATGGAATTGTATTTTCTACCCATAAGTTATCTCTA +ACAAAACTATTTAGTTATGGCACTATTATTATAGACGAAGTTCATGAGCATGATCAAATAGGAGATATTA +TTATAGCAGTAGCGAGAAAACATCATACGAAAATAGATTCTATGTTTTTAATGACTGCCACGTTAGAGGA +TGACAGGGAACGTCTAAAAATATTTTTACCTAATCCCGCATTTATACATATTCCTGGAGATACACTGTTT +AAAATTAGCGAGGTATTTATTCATAATAAGATAAATCCATCTTCCAGAATGGCATATATAGAAGAAGAAA +AGAGAAATTTAGTTACTGCTATACAGATGTATACTCCTCCTGATGGATCATCCGGTATAGTCTTTGTGGC +ATCCGTTGCACAGTGTCACGAATATAAATCATATTTAGAAAAAAGATTACCGTATGATATGTATATTATT +CATGGTAAGGTCTTAGATATAGACGAAATATTAGAAAAAGTGTATTCATCACCTAATGTATCGATAATTA +TTTCTACTCCTTATTTGGAATCCAGCGTTACTATACGCAATGTTACACACATTTATGATATGGGTAGAGT +TTTTGTCCCCGCTCCTTTTGGAGGATCACAACAATTTATTTCTAAATCTATGAGAGATCAACGAAAAGGA +AGAGTAGGAAGAGTTAATCCTGGAACATACGTATATTTCTATGATCTGTCTTATATGAAATCTATACAGC +GAATAGATTCAGAATTTCTACATAATTATATATTGTACGCTAATAAGTTTAATCTAACACTCCCCGAAGA +TTTGTTTATAATCCCTACAAATTTGGATATTCTATGGCGTACAAAGGAATATATAGACTCGTTCGATATT +AGTACAGAAACATGGAATAAATTATTATCCAATTATTATATGAAGATGATAGAGTATGCTAAACTTTATG +TACTAAGTCCTATTCTCGCTGAGGAGTTGGATAACTTTGAGAGGACGGGAGAATTAACTAGTATTGTACA +AGAAGCCATTTTATCTCTAAATTTACAAATTAAGATTTTAAAATTTAAACATAAAGATGATGATACGTAT +ATACACTTTTGTAGAATATTATTCGGTGTCTATAACGGAACAAACGCTACTATATATTATCATAGACCTC +TAACGGGATATATGAATATGATTTCAGATACTATATTTGTTCCTGTAGATAATAACTAAAAATCAAAATC +TAATGACCACATCTTTTTTTAGAGATGAAAAATTTTCCACATCTCCTTTTGTAGACACGACTAAACATTT +TGCAGAAAAAAGTTTATTATTATTTAGATAATCGTATACTTCATCAGTGTAGATAGTAAATGTGAACAGA +TAAAAGGTATTCTTGCTCAATAGATTGGTAAATTCCATAGAATATATTAATCCTTTCTTCTTGAGATCCC +ACATCATTTCAACCAAAGACGTTTTATCCAATGATTTACCTCGTACTATACCACATACAAAACTAGATTT +TGCAGTGATGTCGTACCTGGTATTCCTACCAAACAAAATTTTACTTTTAGTTCTTTTAGAAAATTCTAAG +GTAGAATCTCTATTTGTCAATATGTCATCTATGGAATTACCACTAGCAAAAAATGATAGAAATATATATT +GATACATCGCAGCTGGTTTTGATCTACTATACTTTAAAAACGAATCAGATTCCATAATTGCTTGTATATC +ATCAGCTGAAAAACTATGTTTTACACGTATTCCTTCGGCATTTCTTTTTAATGATATATCTTGTTTAGAC +AATGATAAAGTTATCATGTCCATGAGAGACGCGTCTCCGTATCGTATAAATATTTCATTAGATGTTAGAC +GCTTCATTAGGGGTATACTTCTATAAGGTTTCTTAATTAGTCCATCATTGGTTGCGTCAAGAACTACTAT +CTGATGTTGTTGGGTATCTCTAGTGTTACACATGGCCTTACTAAAGTTTGGGTAAATAACTATGATATCT +CTATTAATTATAGATGTATATATTTCATTCGTCAAGGATATTAATATCGACTTACTATCGTCATTAATAC +GTGTAATGTAATCATATAAATCATGCGATAGCCAAGGAAAATTCAAATAGATGTTCATCATATAATCGTC +GCTATAATTCATATTAATACTTTGACATTGACTAATTTGTAATATAGCCTCGCCACGAAGAAAGCTCTCG +TATTCAGTTTCATCGATAAAGGATACCGTTAAATATAACTGGTTGCCGATAGTCTCATAGTCTATTAAGT +GGTAAGTTTCGTATAAATACAGAATCCCTAAAATATTATCTAATGTGGGATTAATCCTTACCATAACTGT +ATAAAATGGAGCCGGAGTCATAACTATTTTACCGTTTGTACTTACTGGAATAGATGAAGGAATAATCTCC +GGACATGATGGTAAAGACCCAAATGTCTGTTTGAAGAAATCCAATGTTCCAGGTCCTAATCTCTTGACAA +AAATTACGATATTCGATCCCGATATCCTTTGCATTCTATTTACCAGCATATCACGAACTATATTAAGATT +ATCTATCATGTCTATTCTCCCACCGTTATATAAATCGCCTCCGCTAAGAAACGTTAGTATATCCATACAA +TGGAATACTTCATTTCTAAAATAGTATTCGTTTTCTAATTCTTTAATGTGAAATCGTATACTAGAAAGGG +AAAAATTATCTTTGAGTTTTCCATTAGAAAAGAACCACGAAACTAATGTTCTGATTGCGTCTGACTCCGT +CGCTGAATTAATAGATTTACACCAAAAACTCATATAACTTCTAGATGTAGAAGCATTCGCTAAAAAATTA +GTAGAATCAAAGGATATAAGTAGATGTTCCAACAAGTGAGCAATTCCCAAGATTTCATCTATATCATTCT +CGAATCCGAAATTAGAAATTCCCAAGTAGATATCCTTTTTCATCCGATCATTGATGAAAATACGAACTTT +ATTCGGTAAGACGATCATTTACTAAGGAGTAAAATAGGAAGTAACGTTCGTATATCGTTATCGTCGTATA +AATTAAAGGTGTGTTTTTTGCCATTAAGAGACATTATAATTTTACCAATATTGGAATTATAATATAGGTG +TATTTGAGCACTAGAAACGGTCGATGCATCGGTAAATATAGCTGTATCTAATGTTCTAGTCGGTATTTCT +TCATTTCGCTGTCTAATGATAGCGTTTTCTCTATCTGTTTCCATTACAGCTGCCTGAAGTTTATTGGTCG +GATAATATGTAAAATAATAAGAAATACATACGAATAACAAAAATAAAATAAGATATAATAAAGATGCCAT +TTAGAGATCTAATTTTGTTCAACTTGTCCAAATTCCTACTTACAGAAGATGAGGAATCGTTGGAGATAGT +ATCTTCCTTATGTAGAGGATTTGAAATATCTTACGATGACTTAATATCGTACTTTCCAGATAGGAAATAC +CATAAATATATTTCTAAGGTATTTGAACATGTAGATTTATCGGAGGAATTAAGTATGGAATTCCATGATA +CAACTCTGAGAGATTTAGTATATCTTAGATTGTACAAGTATTCCAAGTATATACGGCCGTGTTATAAATT +AGGAGATAATCTAAAAGGTATAGTTGTTATAAAGGACAGAAATATATATATTAGAGAAGCAAATGATGAC +TTGATAGAATATCTCCTCAAGGAATACACTCCTCAGATTTATACATATTCTAATGAGCGAGTTCCCATAG +CTGGTTCAAAATTAATTCTTTGTGGATTTTCTCAAGTTACATTTATGGCGTATACAACGTCGCATATAAC +AACAAATAAAAAGGTAGATGTTCTCGTTTCCAAAAAATGTATAGATGAACTAGTCGATCCAATAAATTAT +CAAATACTTCAAAATTTATTTGATAAAGGAAGCGGAACAATAAACAAAATACTCAGGAAGATATTTTATT +CGGTAACAGGTGGCCAAACTCCATAGGTAGCTTTTTCTATTTCGGATTTTAGAATTTCCAAATTCACCAG +CGATTTATCGGTTTTGGTGAAATCCAAGGATTTATTAATGTCCACAAATGCCATTTGTTTTGTCTGTGGA +TTGTATTTGAAAATGGAAACGATGTAGTTAGATAGATGCGCGGCGAAGTTTCCTATTAGGGTTCCGCGCT +TCACGTCACCCAACATACTTGAATCACCATCCTTTAAAAAAAATGATAAGATATCAACATGGAGTATATC +ATACTCGGATTTTAATTCTTCTACTGCCTCACTGACATTTTCACAAATACTACAATACGGTTTACCGAAA +ATAATCAGTACGTTCTTCATTTATGGGTATCAAAAACTTAAAATCGTTACTGCTGGAAAATAAATCACTG +ACGATATTAGATGATAATTTATACAAAGTATACAATGGAATATTTGTGGATACAATGAGTATTTATATAG +CCGTCGCCAATTGTGTCAGAAACTTAGAAGAGTTAACTACGGTATTCATAAAATACGTAAACGGATGGGT +AAAAAAGGGAGGACATGTAACCCTTTTTATCGATAGAGGAAGTATAAAAATTAAACAAGACGTTAGAGAC +AAGAGACGTAAATATTCTAAATTAACCAAGGACAGAAAAATGTTAGAATTAGAAAAGTGTACATCCGAAA +TACAAAATGTTACCGGATTTATGGAAGAAGAAATAAAGGCAGAAATGCAATTAAAAATCGATAAACTCAC +ATTTCAAATATATTTATCTGATTATGATAACATAAAAATATCATTGAATGAGATACTAACACATTTCAAC +AATAATGAGAATGTTACATTATTTTATTGTGATGAACGAGACGCAGAATTCGTTATGTGTCTAGAGGCTA +AAACACAGTTCTCTACCACAGGAGAATGGCCGTTAATAATAAGTACCGATCAGGATACTATGCTATTCGC +GTCTGCTGATAATCATCCTAAGATGATAAAAAACTTAACTCAACTGTTTAAATTTGTTCCCTCGGCAGAG +GATAACTATTTAGCAAAATTAACTGCATTAGTGAATGGATGTGATTTCTTTCCTGGACTCTATGGGGCAT +CTATAACACCCAACAACTTAAACAAAATACAATTGTTTAGTGATTTTACAATCGATAATATAGTCACTAG +TTTGGCAATTAAAAATTATTATAGAAAGACTAACTCTACCGTAGACGTGCGTAATATTGTTACGTTTATA +AACGATTACGCTAATTTAGACGATGTCTACTCGTATATTCCTCCTTGTCAATGCACTGTTCAAGAATTTA +TATTCTCCGCATTAGATGAAAAATGGAATGAATTTAAATCATCTTATTTAGAGAGCGTGCCGTTACCCTG +CCAATTAATGTACGCATTAGAACCACGTAAGGAGATTGATGTTTCAGAAGTTAAAACTTTATCATCTTAT +ATAGATTTCGAAAATACTAAATCAGATATCGATGTTATAAAATCTATATCCTCGATTTTTGGATATTCTA +ACGAAAACTGTAACACCATAGTGTTCGGCATCTATAAGGATAATTTACTACTGAGTATAAATAATTCATT +TTACTTTAACGATAGTCTGTTAATAACCAATACTAAAAGTGATAATATAATAAATATAGGTTACTAGATT +AAAAAATGGTGTTCCAGCTCGTGTGTTCTACATGCGGCAAAGATATTTCTCACGAACGATATAAATTGAT +TATACGAAAAAAATCATTAAAGGATGTACTAGTCAGTGTAAAGAACGAATGTTGTAGGTTAAAATTATCT +ACACAAATAGAACCTCAACGTAACTTAACAGTGCAACCTCTATTGGATATAAACTAATGGATCCGGTTAA +TTTTATCAAGACATATGCGCCTAGAGGTTCTATTATTTTTATTAATTATGCCATGTCATTAACTAGTCAT +TTGAATCCATCGATAGAAAAACATGTGGGTATTTATTATGGTACGTTATTATCGGAACACTTGGTAGTTG +AATCTACCTATAGAAAAGGAGTTAGAATAGTCCCATTGGATAGATTTTTTGAAGGATATCTTAGTGCAAA +AGTATACATGTTAGAGAATATTCAAGTTATGAAAATAGCAGCTGATATGTCGTTAACTTTACTAGGTATT +CCATATGGATTTGGTCATGATAGAATGTATTGTTTTAAATTGGTAGCTGAATGTTATAAAAATGCCGGTA +TTGATACATCGTCTAAACGAATATTAGGTAAAGATATTTTTCTGAGCCAAAACTTTACAGATGATAATAG +ATGGATAAAGATATATGATTCTAATAATTTAACATTTTGGCAAATTGATTACCTTAAAGGGTGAGTTAAT +ATGCATAACTACTCCTCCGTTGTTTTTTCCCTCGTTCTTTTTCTTAACGTTGTTTGCCATCACTCTCATA +ATGTAAAGATATTCTAAAATGGTAAACTTTTGCATATCGGATGCAGAAATTGGTATAAATGTTGTAATTG +TATTATTTCCCGTCAATGGACTAGTCACAGCTCCATCAGTTTTATATCCTTTAGAGTATTTCTCACTCGT +GTCTAGCATTCTAGAGCATTCCATGATCTGTTTATCGTTGATATTGGCCGGAAAGATAGATTTTTTATTT +TTTATTATATTACTATTGGCAATTGTAGATATAACTTCTGGTAAATATTTTTCTACCTTTTCAATCTCTT +CTATTTTCAAGCCGGCTATATATTCTGCTATATTGTTACTAGTATCAATACCTTTTCTGGCTAAGAAGTC +ATATGTGGTATTCACTATATCAGTTTTAACTGGTAGTTCCATTAGCCTTTCCACTTCTGCAGAATAATTA +GAAATTGGTTCTTTACCAGAAAATCCAGCTACTATAATAGGCTCACCGATGATCATTGGCAAAATCCTAT +ATTGTACCAGATTAATGAGAGCATATTTCATTTCCAATAATTCTGCTAGTTCTTGAGACATTGATTTATT +TGATGAATCTATTTGGTTCTCTAGATACTCTACCATTTCTGCCGCATACAATAACTTGTTAGATAAAATC +AGGGTTATCAAAGTGTTTAGTGTGGCTAGAATAGTGGGCTTGCACGTATTAAAGAATGCTGTAGTATGAG +TAAACCGTTTTAACGAATTATATAGTCTCCAGAAATCTGTGGCGTTGCATACATGAACTGAATGACATCG +AAGATTGTCCAATATTTTTAATAGCTGCTCTTTGTCCATTATTTCTATATTTGACTCGCAACAATTGTAG +ATACCATTAATCACTGATTCCTTTTTCGATGCCGGACAATAGCACAATTGTTTAGCTTTGGACTCTATGT +ATTCAGAATTAATAGATATATCTCTCAATACAGATTGCACTATACATTTTGAAACTATGTCAAAAATTGT +AGAACGACGCTGTTCTGTAGCCATTTAACTTTAAATAATTTACAAAAATTTAAAATGAGCATCCGTATAA +AAATCGATAAATTGCGCCAAATTGTGGCATATTTTTCAGAGTTCAGCGAAGAAGTGTCTATAAATGTAGA +CTTGACGGATGAATTAATGTATATTTTTGCCGCCTTGGGCGGATCTGTAAACATTTGGGCCATTATACCT +CTCAGTGCATCAGTGTTCTACCGCGGAGCCGAAAATATTGTGTTTAACCTTCCAGTGTCCAAGGTAAAAT +CGTGTTTGTGTAGTTTTCACAATGATGCTATCATAAATATAGAACCTGATCTGGAAAATAATCTAGTAAA +ACTTTCTAGTTATCATGTAGTAAGTGTCGATTGTAACAAGGAACTGATGCCTATTAGGACAGATACTACT +ATTTGTCTAAGTATAGATCAAAAGAAATCTTACGTATTTAATTTTCACAAGTATGAAGAAAAATGTTGTG +GTAGAACCGTCATTCATCTAGAATGGTTGTTGGGCTTTATCAAGTGTATTAGTCAGCATCAGCATTTGGC +TATTATGTTTAAAGATGACAATATTATTATGAAGACTCCTGGTAATACTGATGCGTTTTCCAGGGAATAT +TCTATGACTGAATGTTCTCAAGAACTACAAAAGTTTTCTTTCAAAATAGCTATCTCGTCTCTCAACAAAC +TACGAGGATTCAAAAAGAGAGTCAATGTTTTTGAAACTAGAATCGTAATGGATAATGACGATAACATTCT +AGGAATGTTGTTTTCGGATAGAGTTCAATCCTTTAAGATTAACATCTTTATGGCGTTTTTAGACTAATAC +TTTCAATGAGATAAATATGGGTGGCGGAGTAAGTGTTGAGCTCCCTAAACGGGATCCACCTCCGGGAGTA +CCCACTGATGAGATGTTATTAAACGTGGATAAAATGCATGACGTGATAGCTCCCGCTAAGCTTTTAGAAT +ATGTGCATATAGGACCACTAACAAAAGATAAAGAGGATAAAGTAAAGAAAAGATATCCAGAGTTTAGATT +AGTCAACACAGGACCCGGTGGTCTTTCGGCATTATTAAGACAATCATATAATGGAACCGCACCCAATTGC +TGTCGCACTTTTAATCGTACTCATTATTGGAAGAAGGATGGAAAGATATCAGATAAGTATGAAGAGGGTG +CAGTATTAGAATCGTGTTGGCCCGACGTCCACGACACTGGAAAATGCGATGTTGATTTATTCGACTGGTG +TCAGGGGGATACGTTCGATATAAACATATGCCATCAGTGGATCGGTTCAGCCTTTAATAGGAGTGATAGA +ACTGTAGAGGGTCGACAATCGTTAATAAATCTGTATAATAAGATGCAAAGATTATGTAGTAAAGATGCTA +GTGTACCAATATGTGAATTATTTTTGCATCATTTACGCGCACACAATACAGAAGATAGTAAAGAGATGAT +CGATTATATTCTAAGACAACAGTCGGCGGACTTTAAACAGAAATATATGAGATGTAGTTATCCCACTAGA +GATAAGTTAGAAGAGTCATTAAAATATGCGGAACCTCGAGAATGTTGGGATCCAGAGTGTTCGAATGCCA +ATGTTAATTTCTTACTAACACGTAATTATAATAATTTAGGACTTTGCAATATTGTACGATGTAATACGAG +CGTGAATAACTTACAGATGGATAAAACTTCCTCATTAAGATTATCATGTGGATTAAGCAATAGTGATAGA +TTTTCTACTGTTCCCGTCAATAGAGCAAAAGTAGTTCAACATAATATTAAACATTCGTTCGACCTAAAAT +TGCATTTGATCAGTTTATTATCTCTCTTGGTAATATGGATACTAATTGTAGCTATTTAAATGGGTGCCGC +AGCAAGCATACAGACGACTGTGAATACACTCAGTGAACGTATCTCGTCTAAATTAGAACAAGAAGCGAAC +GCTAGTGCTCAAACAAAATGTGATATAGAAATCGGAAATTTTTATATCCGACAAAACCATGGATGTAACA +TCACTGTTAAAAATATGTGCTCTGCGGACGCGGATGCTCAGTTGGATGCTGTGTTATCAGCCGCTACAGA +AACATATAGTGGATTAACACCGGAACAAAAAGCATACGTACCAGCTATGTTTACTGCTGCGTTAAACATT +CAGACGAGTGTAAACACTGTTGTTAGAGATTTTGAAAATTATGTGAAACAGACTTGTAATTCTAGCGCTG +TTGTCGATAACAAATTAAAGATACAAAACGTAATTATAGATGAATGTTACGGAGCCCCAGGATCTCCAAC +AAATTTGGAATTTATTAATACAGGATCTAGCAAAGGAAATTGTGCCATTAAGGCGTTGATGCAATTGACT +ACTAAGGCCACTACTCAAATAGCACCTAGACAAGTTGCTGGTACAGGAGTTCAGTTTTATATGATTGTTA +TCGGTGTTATAATATTGGCAGCGTTGTTTATGTACTATGCCAAGCGTATGCTGTTCACATCCACCAATGA +TAAAATCAAACTTATTTTAGCCAATAAGGAAAACGTCCATTGGACTACTTACATGGACACATTCTTTAGA +ACTTCTCCGATGATTATTGCTACCACGGATATACAAAACTGAAAATATATTGATAATATTTTAATAGATT +AACATGGAAGTTATCGCTGATCGTCTAGACGATATAGTGAAACAAAATATAGCGGATGAAAAATTTGTAG +ATTTTGTTATACACGGTCTAGAGCATCAATGTCCTGCTATACTTCGACCATTAATTAGGTTGTTTATTGA +TATACTATTATTTGTTATAGTAATTTATATTTTTACGGTACGTCTAGTAAGTAGAAATTATCAAATATTG +TTGGTGTTGGTGGCGCTAGTCATCACATTAACTATTTTTTTATTACTTTATACTATAATAGTACTAGACT +GACTTCTAACAAACATCTCACCTGCCATAAATAAATGCTTGATATTAAAGTCTTCTATTTCTAACACTAT +TCCATCTGTGGAAAATAATACTCTGACATTATCGCTAATTGATACATCGGTAAGTGATATGCCTATAAAG +TAATAATCTTCTTTGGGCACATATACCAGTGTACCAGGTTCTAACAACCTATTTACTGGTGCTCCTGTAG +CATACTTTTTTTTTACCTTGAGAATATCCATTGTTTGCTTGGTCAATAGTGATATGTGATTTTTTATCAA +CCACTCAAAAAAGTAATTGGAGTGTTCATATCCTCTACGGGCTATTGTCTCATGACCGTGTATGAAATTT +AAGTAACACGACTGTGGTAGATTTGTTCTATAGAGCCGGTTGCCGCAAATAGATAGAACTACCAATATGT +CTGTACAAATGTTAAACATTAATTGATTAACAGAAAAAACAATGTTCGTTCTGGGAATAGAAACCAGATT +AAAACAAAATTCATTAGAATATATGCCACGTTTATACATGGAATATAAAATAACTACAGTTTGAAAAATA +ACAGTATCATTTAAACATTTAACTTGCGGGGTTAATCTCACAACTTTACTGTTTTTGAACTGTTCAAAAT +ATAGCATAGATCCATGAGAAATACGTTTAGCCGCCTTTAATAGAGGAAATCCAACCGCCTTTCTGGATCT +CACCAACGACGATAGTTCTGACCAGCAACTCATTTCTTCATCATCCACCTGTTTTAACATATAATAGGCA +GGAGATAGATATCCATCATTGCAATATTCCTTCTCGTAGGCACACAATCTAATATTGATAAAATCTCCAT +TCTCTTCTCTGTATTTATTATCTTGTCTCGGTGGCTGATTAGGCTGTGGTCTATCGTTGTTGAATCTATT +TTGGTCATTAAATCTTTCATTTCTTCCTGGTATATTTCTATCACCTCGTTTGGTTGGATTTTTGTCTATA +TTATCGTTTGTAACATCGGTACGGGTATTCATTTATCACAAAAAAAACTTCTCTAAATGAGTCTACTACT +AGAAAACCTCATCGAAGAAGATACCATATTTTTTGCAGGAAGTATATCTGAGTATGATGATTTACAAATG +GTTATTGCTGGTGCAAAATCCAAATTTCCAAGATCTATGCTTTCTATTTTTAATATAGTACCTAGAACGA +TGTCAAAATATGAGTTGGAGTTGATTCATAACGAGAATATCACAGGGGCAATGTTTACCACAATGTATAA +TATAAGAAACAATTTGGGTCTAGGCGATGATAAACTAACTATTGAAGCCATTGAAAACTATTTCTTGGAT +CCTAACAATGAGGTTATGCCTCTTATCATTAATAATACGGATATGACTACCGTCATTCCTAAAAAAAGTG +GTAGGAGAAAGAATAAGAACATGGTTATCTTCCGTCAAGGATCATCACCTATCTTGTGTATTTTCGAAAC +TCGTAAAAAGATTAATATTTATAAAGAAAATATGGAATCCGTATCGACTAAGTATACACCTATCGGAGAC +AACAAGGCTTTGATATCTAAATATGCGGGAATTAATATCCTGAATGTGTATTCTCCTTCCACGTCCATGA +GATTGAATGCCATTTACGGATTCACCAATAAAAATAAACTAGAGAAACTTAGTACTAATAAGGAACTAGA +ATCGTATAGTTCTAGCCCTCTTCAAGAACCCATTAGGTTAAATGATTTTCTGGGACTATTGGAATGTGTT +AAAAAGAATATTCCTCTAACAGATATTCCGACAAAGGATTGATTACTATAAATGGAGAATGTTCCTAATG +TATACTTTAATCCTGTGTTTATAGAGCCCACGTTTAAACATTCTTTATTAAGTGTTTATAAACACAGATT +AATAGTTTTATTTGAAGTATTCGTTGTATTCATTCTAATATATGTATTTTTTAGATCTGAATTAAATATG +TTCTTCATGCCTAAACGAAAAATACCCGATCCTATTGATAGATTACGACGTGCTAATCTAGCGTGTGAAG +ACGATAAATTAATGATCTATGGATTACCATGGATAACAACTCAAACATCTGCGTTATCAATAAATAGTAA +ACCGATAGTGTATAAAGATTGTGCAAAGCTTTTGCGATCAATAAATGGATCACAACCAGTATCTCTTAAC +GATGTTCTTCGCAGATGATGATTCATTTTTTAAGTATTTTGCTAGTCAAGATGATGAATCTTCATTATCT +GATATATTGCAAATCACTCAATATCTAGACTTTCTGTTATTATTATTGATCCAATCAAAAAATAAATTAG +AAGCTGTGGGTCATTGTTATGAATCTCTTTCAGAGGAATACAGACAATTGACAAAATTCACAGACTCTCA +AGATTTTAAAAAACTGTTTAACAAGGTCCCTATTGTTACAGATGGAAGGGTCAAACTTAATAAAGGATAT +TTGTTCGACTTTGTGATTAGTTTGATGCGATTCAAAAAAGAATCAGCTCTAGCTACCACCGCAATAGATC +CTGTTAGATACATAGATCCTCGTCGTGATATCGCATTTTCTAACGTGATGGATATATTAAAGTCGAATAA +AGTTGAAAAATAATTAATTCTTTATTGTTATCATGAACGGCGGACATATTCAGTTGATAATCGGCCCCAT +GTTTTCAGGTAAAAGTACAGAATTAATTAGACGAGTTAGACGTTATCAAATAGCTCAATATAAATGTGTG +ACTATAAAATATTCTAACGATAATAGATACGGAACGGGACTATGGACACATGATAAGAATAATTTTGCAG +CATTGGAAGTAACTAAACTATGTGATGTCTTGGAAGCAATTACAGATTTCTCCGTGATAGGTATAGATGA +AGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA +GCCGCGCTCGATGGGACATTTCAACGTAGACCGTTTAATAATATTTTGAATCTTATTCCATTATCTGAAA +TGGTGGTAAAACTAACTGCAGTGTGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACGATTAGGTAC +AGAAACCGAGATAGAAATAATAGGAGGTAATGATATGTATCAATCTGTGTGTAGAAAGTGTTACATCGAC +TCATAATATTATATTTTTTATCTAAAAAACTAAAAATAAACATTGATTAAATTTTAATATAATACTTAAA +AATGGATGTTGTGTCGTTAGATAAACCGTTTATGTATTTTGAGGAAATTGATAATGAGTTAGATTACGAA +CCAGAAAGTGCAAATGAGGTCGCAAAAAAACTGCCGTATCAAGGACAGTTAAAACTATTACTAGGAGAAT +TATTTTTTCTTAGTAAGTTACAGCGACACGGTATATTAGATGGCGCCACCGTAGTGTATATAGGATCTGC +TCCAGGTACACATATACGTTATTTGAGAGATCATTTCTATAATTTAGGAGTGATCATCAAATGGATGCTA +ATTGACGGCCGCCATCATGATCCTATTCTAAATGGATTGCGTGATGTGACTCTAGTGACTCGGTTTGTTG +ATGAGGAATATCTACGATCCATCAAAAAACAACTACATCCTTCTAAGATTATTTTAATTTCTGATGTGCG +ATCCAAACGAGGAGGAAATGAACCTAGTACTGCGGATTTACTAAGTAATTATGCTCTACAAAATGTCATG +ATTAGTATTTTAAACCCCGTGGCGTCTAGTCTTAAATGGAGATGCCCGTTTCCAGATCAATGGATCAAGG +ACTTTTATATCCCACACGGTAATAAAATGTTACAACCTTTTGCTCCTTCATATTCAGCTGAAATGAGATT +ATTAAGTATTTATACCGGTGAGAATATGAGACTGACTCGAGTTACCAAATCAGACGCTGTAAATTATGAA +AAAAAGATGTATTACCTTAATAAGATAGTCCGCAACAAAGTAGTTATTAACTTTGATTATCCTAATCAGG +AATATGACTATTTTCACATGTACTTTATGTTGAGGACCGTATACTGCAATAAAACATTTCCTACTACTAA +AGCAAAGATACTATTTCTACAACAATCTATATTTCGTTTCTTAAATATTCCAACGACATCAACTGAAAAA +GTTAGTCATGAACCAATACAACGTAAAATATCTAGCAAAGATTCTATGTCTAAAAACAGAAATAGCAAGA +GATCCGTACGCGGTAATAAATAGAAACGTACTACTGAGATATACTACCGATATAGAGTATAATGATTTAG +TTACTTTAATAACCGTTAGACATAAAATTGATTCTATGAAAACTGTGTTTCAGGTATTTAACGAATCATC +CATAAATTATACTCCGGTTGATGATGATTATGGAGAACCAATCATTATAACATCGTATCTTCAAAAAGGT +CATAACAAGTTTCCTGTAAATTTTCTATACATAGATGTGGTAATATCTGACTTATTTCCTAGCTTTGTTA +GACTAGATACTACAGAAACTAATATAGTTAATAGTGTACTACAAACAGGCGATGGTAAAAAGACTCTTCG +TCTTCCTAAAATGTTAGAGACGGAAATAGTTGTCAAGATTCTCTATCGTCCTAATATACCATTAAAAATT +GTTAGATTTTTCCGCAATAACATGGTAACTGGAGTAGAGATAGCCGATAGATCTGTTATTTCAGTCGCTG +ATTAATCAATTAGTAGAGATGAGATAAGAACATTATAATAATCAATAATATATCTTATATCTGTTTAGAA +AAATGCTAATATTAAAATAGCTAACGCTAGTAATCCAATCGGAAGCCATTTGATATCTATAATAGGGTAT +CTAATTTCCTGATTCAGATAGCGTACGGCTATATTCTCGGTAGCTACTCGTTTGGAATCACAGACATTAT +TTACATCTAATTTACTATCTGTAATGGAAACGTTTCCCAATGAAATGGTACAATCAGATACATTACATCT +TGATATATTTTTTTTTAAAGAGGCTGGTAACAACGCATCGCTTCGTTTACATGGCTCGTACCAACAATAA +TAGGGTAATCTTGTATCTATTCCTATCCGTACTATACTTTTATCAGGATAAATACATTTACATCGTATAT +CGTCTTTGTTAGTATCACAGAATGCATAAATTTGTTCGTCCGTCATGATAAAAATTTAAAGTGTAAATAT +AACTATTATTTTTATAGTTATAATAAAAAGGGAAATTTGATTGTATACCTTCGGTTCTTTAAAAGAAACT +GACTTGATAAAAATGGCTGTAATCTCTAAGGTTACGTATAGTCTATACGATCAAAAAGAGATTAATGCCA +CAGATATTATCATTAGTCATATTAAAAATGACGACGATATCGGTACCGTTAAAGATGGTAGACTAGGTGC +TATGGATGGGGCATTATGTAAAACTTGTGGGAAAACGGAATTGGAATGTTTCGGTCACTGGGGTAAAGTA +AGTATTTATAAAACTCATATAGTTAAGCCTGAATTTATTTCAGAAATTATTCGTTTACTGAATCATATAT +GTATTCATTGCGGATTATTGCGTTCACGAGAACCGTATTCCGACGATATTAACCTAAAAGAGTTATCGGT +ACACGCTCTTAGGAGATTAAAGGATAAAATATTATCCAAGAAAAAGTCATGTTGGAACAGCGAATGTATG +CAACCGTATCAAAAAATTACTTTTTCAAAGAAAAAGGTTTGTTTCGTCAACAAGTTGGATGATATTAACG +TTCCTAATTCTCTCATCTATCAAAAGTTAATTTCTATTCATGAAAAGTTTTGGCCATTATTAGAAATTCA +TCAATATCCAGCTAACTTATTTTATACAGACTACTTTCCCATCCCTCCGTTGATTATTAGACCGGCTATT +AGTTTTTGGATAGATAGTATACCCAAAGAGACAAATGAATTAACTTACTTATTAGGTATGATCGTTAAGA +ATTGTAACTTGAATGCTGATGAACAGGTTATCCAGAAGGCGGTAATAGAATACGATGATATTAAAATTAT +TTCTAATAACACTACCAGTATCAATTTATCATATATCACATCCGGCAAAAATAATATGATTAGAAGTTAT +ATCGTCGCTCGGCGAAAAGATCAGACCGCTAGATCCGTAATTGGTCCCAGTACATCTATCACCGTTAATG +AGGTAGGAATGCCCACATATATTAGAAATACACTTACAGAAAAGATATTTGTTAATGCCTTTACAGTGGA +TAAAGTTAAACAACTATTAGCATCAAACCAAGTTAAATTTTACTTTAATAAACGATTAAACCAATTAACA +AGAATACGTCAAGGAAAGTTTATCAAAAATAAAATACATTTATTGCCTGGTGATTGGGTAGAAGTAGCTG +TTCAAGAATATACAAGTATTATTTTTGGAAGACAACCGTCTCTACATAGATACAACGTCATCGCTTCATC +TATCAGAGCTACCGAAGGAGATACTATCAAAATATCTCCCGGAATTGCCAACTCTCAAAATGCTGATTTT +GACGGAGATGAAGAATGGATGATATTGGAGCAAAATCCTAAAGCCGTAGTTGAACAAAGTATTCTTATGT +ATCCGACAACGTTACTCAAACACGATATTCATGGAGCCCCCGTTTATGGATCTATTCAAGATGAAATCGT +AGCAGCGTATTCATTGTTTAGGATACAAGATCTTTGTTTAGATGAAGTATTGAACATCTTGGGGAAATAT +GGAAGAGAGTTCGATCCTAAAGGTAAATGTAAATTCAGCGGTAAAGATATCTATACTTACTTGATAGGTG +AAAAGATTAATTATCCGGGTCTCTTAAAGGATGGTGAAATTATTGCAAACGACGTAGATAGTAATTTTGT +TGTAGCTATGAGGCATCTGTCATTGGCTGGACTCTTATCCGATCATAAATCGAACGTGGAAGGTATCAAC +TTTATTATCAAGTCATCTTATGTTTTTAAGAGATATCTATCTATATACGGTTTTGGGGTGACATTCAAAG +ATCTGAGACCAAATTCGACGTTCACTAATAAATTGGAGGCTATCAACGTAGAAAAAATAGAACTTATCAA +AGAAGCATACGCCAAATATCTCAAAGATGTAAGAGACGGGAAAATAGTTCCATTATCTAAAGCTTTAGAG +GCGGACTACTTGGAATCCATGTTATCCAACTTGACAAATCTTAATATCAGAGAGATAGAAGAACATATGA +GACAAACGCTGATAGATGATCCAGATAATAACCTCCTGAAAATGGCCAAAGCGGGTTATAAAGTAAATCC +CACAGAACTAATGTATATTCTAGGTACTTATGGACAACAGAGGATAGATGGCGAACCAGCAGAGACTCGA +GTATTGGGTAGAGTCTTACCTTACTATCTTCCAGACTCTAAGGATCCAGAAGGAAGAGGTTATATTCTTA +ATTCTTTAACAAAAGGATTAACGGGTTCTCAATATTACTTTTTGATGCTGGTTGCAAGATCTCAATCTAC +TGATATTGTCTGTGAAACATCACGTACCGGAACACTGGCTAGAAAAATCATTAAAAAGATGGAGGATATG +GTGGTCGACGGATACGGACAAGTAGTTATAGGTAATACGCTCATCAAGTACGCAGCCAATTATACCAAAA +TTCTAGGCTCAGTATGTAAACCTGTAGATCTTATCTATCCAGATGAGTCCATGACTTGGTATTTGGAAAT +TAGTGCTTTGTGGAATAAAATAAAACAGGGATTCGTTTACTCTCAGAAACAGAAACTTGCAAAGAAGACA +TTGGCGCCGTTTAATTTCCTAGTATTCGTCAAACCCACCACTGAGGATAATGCTATTAAGGTTAAGGATC +TGTACGATATGATTCATAACGTCATTGATGATGTGAGAGAGAAATACTTCTTTACGGTATCTAATATAGA +TTTTATGGAGTATATATTCTTGACGCATCTTAATCCTTCTAGAATTAGAATTACAAAAGAAACGGCTATT +ACTATCTTTGAAAAGTTCTATGAAAAACTCAATTATACTCTAGGTGGTGGAACTCCTATTGGAATTATTT +CTGCACAGGTATTGTCTGAGAAGTTTACACAACAAGCCCTGTCCAGTTTTCACACTACTGAAAAGAGTGG +TGCTGTAAAACAAAAACTTGGTTTCAACGAGTTTAATAACTTGACTAATTTGAGTAAGAATAAGACCGAA +ATTATCACTCTGGTATCCGATGATATCTCTAAACTTCAATCTGTTAAGATTAATTTCGAATTTGTATGTT +TGGGAGAATTAAATCCAGACATCACTCTTCGAAAAGAAACAGATAGATATGTAGTAGACATAATAGTCAA +TAGATTATACATCAAGAGAGCAGAAATAACCGAATTAGTCGTCGAATATATGATTGAACGATTTATCTCC +TTTAGCGTCATTGTAAAGGAATGGGGTATGGAGACATTCATTGAGGACGAGGATAATATTAGATTTACTA +TCTACCTAAATTTCGTTGAACCGGAGGAATTGAATCTTAGTAAGTTTATGATGGTTCTTCCAGGTGCCGC +CAACAAGGGCAAGATTAGTAAATTCAAGATTCCTATCTCTGACTATACGGGATATAACGACTTCAATCAA +ACAAAAAAGCTCAATAAGATGACTGTAGAACTCATGAATCTAAAAGAATTGGGTTCTTTCGATTTGGAGA +ACGTCAACGTGTATCCTGGAGTATGGAATACATACGATATCTTTGGTATTGAGGCCGCTCGTGGATACTT +GTGCGAAGCCATGTTAAACACCTATGGAGAAGGTTTCGATTATCTGTACCAGCCTTGTGATCTTCTCGCT +AGTTTACTATGTGCTAGTTACGAACCAGAATCAGTTAATAAATTCAAGTTCGGTGCAGCTAGTACTCTTA +AGAGAGCTACGTTCGGAGATAATAAAGCATTGTTAAACGCGGCTCTTCATAAAAAGTCAGAACCTATTAA +CGATAATAGTAGCTGCCACTTTTTTAGCAAGGTCCCTAATATAGGAACTGGATATTACAAATACTTTATC +GACTTGGGTCTTCTCATGAGAATGGAAAGGAAACTATCTGATAAGATATCTTCTCAAAAGATCAAGGAGA +TAGAAGAAACAGAAGACTTTTAATTCTTATCAATAACATATTTTTCTATGATCTGTCTTTTAAACGATGG +ATTTTCCACAAATGCGCCTCTCAAGTCCCTCATAGAATGATACACGTATAAAAAATATAGCATAGGTGAT +GACTCCTTATTTTTAGACATTAGATATGCCAAAATCATAGCCCCGCTTCTATTTACTCCTGCAACACAAT +GAACCAACACGGGCTCGTTTCGTTGATCACATTTAGATAAGAAGGCGGTCACGTCGTCAAAATATTTACT +AATATCAGTAGTTGTATCATCTACCAACGGTATATGAATAATATTAATATTAGAGTTAGGTAATGTATAT +TTATCCATCGTCAAATTTAAAACATATTTGAACTTAACTTCAGATGATGGTGCATCCATAGCATTTTTAT +AATTTCCCAAATACACATTATTTGTTACTCTTGTCATTATAGTGGGAGATTTGGCTCTGTGCATATCTCC +AGTTGAACGTAGTAGTAAGTATTTATACAAACTTTTCTTATCCATTTATAACGTACAAATGGATAAAACT +ACTTTATCAGTAAACGCATGCAATTTAGAATACGTTAGAGAAAAGGCTATAGTAGGCGTACAAGCAGCCA +AGACATCAACACTTATATTTTTTGTTATTATATTGGCAATTAGTGCGCTATTACTCTGGTTTCAGACGTC +TGATAATCCAGTCTTTAATGAATTAACGAGATATATGCGAATTAAAAATACGGTTAACGATTGGAAATCA +TTAACGGATAGCAAAACAAAATTAGAAAGCGATAGAGGTAGACTTCTAGCCGCTGGTAAGGATGATATAT +TCGAATTCAAATGTGTGGATTTCGGCGCCTATTTTATAGCTATGCGATTGGATAAGAAAACATATCTGCC +GCAAGCTATTAGGCGAGGTACTGGAGACGCGTGGATGGTTAAAAAGGCGGCAAAAGTCGATCCATCTGCT +CAACAATTTTGTCAGTATTTGATAAAACACAAGTCTAATAATGTTATTACTTGTGGTAATGAGATGTTAA +ATGAATTAGGTTATAGCGGTTATTTTATGTCACCGCATTGGTGTTCCGATCTTAGTAATATGGAATAAGT +GTTAGATAAATGCGGTAACAAATGTTCCTGTAAGGAACCATAACAGTTTAGATTTAACATTAAAGATGAG +CATAAACATAATAAACAAAATTACAATCAAACCTATAACATTAATATCAAACAATCCAAAAAATGAAATC +AATGGAGTAGTAAACGTGTACATAACTCCTGGATAACGTTTAGCAGCTACCGTTCCTATTCTAGACCAAA +AATTTGGTTTCATGGTTTCGAAGCGGTGTTCTGCAACAAGACGAGGATCGTGTTCTACATATTTGGCAGA +GTTATCCATTATTTGCCTGTTAATCTTCATTTCGTTTTCGATTCTGGCTATTTCAAAATAAAATCCCGAT +GATAGACCTCCAGACTTTATAATTTCATCTACGATGTTCAGCGCCGTAGTAACTCTAATAATATAGGCGG +ATAAGCTAACATCATACCCTCCTGTATATGTAAATATGGCATGATCTTTGTCTATTACAAGCTCGGTTTT +AACTTTATTTCCTGTAATAATTTCTCTCATCTGTAGGATATCTATTTTCTTGTCATGTATTGCCTTCAAG +ACGGGACGAAGAAACGTAATATCCTCAATAACGTTATCGTTTTCTATAATAACTACATATTCTACATTTT +TATTTTCTAGCTCGGTAAAAAATTTAGAATCCCATAGGGCTAAATGTCTAGCGATATTTCTTTTCGTTTC +CTCTGTACACATAGTGTTACAAAACCCTGAAAAGAAGTGAGTATACTTGTCATCATCTCTAATATTTCCT +CCAGTCCATTGTATAAACACATAATCCTTGTAATGATCTGGATCATCATTGACTATCACAACATCTCTTT +TTTCTTGCATAACTTCATTGTCCTTCACATCATCGAACTTCTGATCATTAATATGCTCATGAACATTAGG +AAATGTTTCTGATGGAGGTCTATCAATAACTGGCACAACAATAACAGGAGTTTTCACCGCCGCCATTTAG +TTATTGAAATTAATCATATACAACTCTCTAATACGAGTTATATTTTCGTCTATCCATTGTTTCACATTGA +CATATTTCGACAAAAAGATATAAAATGCGTATTCCAATGCTTCTCTGTTTAATGAATTACTAAAATATAC +AAACACGTCACTGTCTGGTAATAAATAATATCTTAGAATATTGTAACAATTTATTTTGTATTGCACATGT +TCGTGATCTATGAGTTCTTCTTCAAATGGCATAGGATCTCCGAATCTGAAAACGTATAAATAGGAGTTAG +AATAATAATATTTGAGAGTATTGGTAATGTATAAACTCTTTAGCGGTATAATTAGTTTTTTTCTCTCGAT +TTCTATTTTTAGATGTGATGGAAAAATGACTAATTTTGTAGCATTAGTATCATGAACTCTAATCAAAATC +TTAATATCTTCGTCACATGTTAGCTCTTTGAAGTTTTTAAGAGATGCATCAGTTGGTTTTACAGATGGAG +TAGGTGCAACAATTTTTTGTTTAATGCATGCATGTATTGGAGCCATTGTCTTAACTATAATGGTGCTTGT +ATCGAAAAACTTTAATGCGGATAACGGAAGCTCTTCGCCGCGACTTTCTACGTCGTAATTGGGTTCTAAT +GCCGATCTCTGAATGGATACTAGTTTTCTAAGTTCTAATGTAATTCTCTGAAAATGTAAATCCAATTCCT +CCGGCATTATAGATGTGTATACATCGGTAAATAAAACTATAGTATCCAACGATCCCTTCTCGCAAATTCT +AGTCTTAACCAAGAAATCGTATATAACTACGGAGATGGCGTATTTAAGAGTGGATTCTTCTACCGTTTTG +TTCTTGGATTTCATATAAGAAACTATAAAGTCCGCACTACTGTTAAGAATGATCACTAACGCAACTATAT +AGTTCAAATTAAGCATCTTGGAAACATAAAATAACTCTGTAGATGATACTTGACTTTCGAATAAGTTTGC +AGACAAACGAAGAAAGAACAGACCTCTCTTAATTTCAGAAGAAAACTTTTTTTCGTATTCCTGACGTCTA +GAGTTTATATCAATAAGAAAGTTAAGAATTAGTCGGTTAATGTTGTATTTCATTACCCAAGTTTGAGATT +TCATAATATTGTCAAAAGACATGATAATATTAAAGATAAAGCGCTGACTATGAACGAAATAGCTATATGG +TTCGCTCAAGAATATAGTCTTGTTAAACGTGGAAACGATAACTGTATTTTTAATCACGTCAGCGGCATCT +AAATTAAATATAGGTATATTTATTCCACACACTCTACAATATGCCACACCATCTTCATAATAAATAAATT +CGTTAGCAAAATTATTAATTTTAGTGAAATAGTTAGCGTCAACTTTCATAGCTTCCTTCAATCTAATTTG +ATGCTCACATGGCGCGAATTCTACTCTAACATCCCTTTTCCATGCCTCAGGTTCATCGATCTCTATAATA +TCTAGTTTCTTGCGTTTCACAAACACAGGCTCGTCTCTCGCGATGAGATCTGTATAGTAACTATGTAAAT +GATAACTAGATAGAAAGATGTAGCTATATAGATGACGATCCTTTAAGAGAGGTATAATAACTTTACCCCA +ATCAGATAGACTGTTGTTATGGTCTTCGGAAAAAGAATTTTTATAAATTTTTCCAGTATTTTCTAAATAT +ACGTACTTGATATCTAAGAAATCCTTAATAATAATAGGAATGGATAATCCGTCTATTTTATAAAGAAATA +CATATCGCATATTATACTTTTTTTTGGAAATTGGAATACCGATGTGTCTACATAAATACGCAAAGTCTAA +ATATTTTTTAGAGAATCTTAGTTGGTCCAAATTCTTTTCCAAGTACGGTAATAGATTTTTCATATTGAAC +GGTATCTTCTTGATCTCTGGTTCTAATTCCGCATTAAATGATGAAACTAAGTCACTATTTTTATAACTAA +CGATTACATCACCTCTAACATCATCATTTACCAGGATACTGATCTTCTTTTGTCGTAAATACATGTCTAA +TGTGTTAAAAAAAAGATCATACAAGTTATACGTCATTTCATCTGTAGTATTCTTGTCATTGAAGGATAAA +CTCGTACTAATCTCTTCTTTAACAGTCTGTTCAAATTTATATCCTATATATGAAAAAATAGCAACCAGTG +TTTGATCATCCGCGTCAATATTCTGTTCTATCGTAGTGTATAACAATCTTATATCTTCTTCTGTGATAGT +CGATACGTTATAAAGGTTGATAACGAAAATATTTTTATTTCGTGAAATAAAGTCATTGTAGGATTTTGGA +CTTATATTCGTGTCTAGTAGATATGATTTTATTTTTGGAATGATCTCAATTAAAATAGTCTCTTTAGAGT +CCATTTAAAGTTACAAACAACTAGGAAATTGGTTTATGATGTATAATTTTTTTAGTTTTTATAGATTCTT +TATTCTATACTTAAAAAATGAAAATAAATACAAAGGTTCTTGAGGGTTGTGTTAATTGAAAGCGATAAAT +AATCATAAATTATTTCATTATCGCGATATCCGTTAAGTTTGTATCGTAATGGCGTGGTCAATTACGAATA +AAGCGGATACTAGTAGTTTCACAAAGATGGCTGAAATCAGAGCTCATCTAAGAAATAGCGCTGAAAATAA +AGATAAAAACGAGGATATTTTCCCGGAAGATGTAATAATTCCATCTACTAAGCCCAAAACCAAACGAACC +ACTACTCCTCGTAAACCAGCGGCTACTAAAAGATCAACCAAAAAGGATAAAGAAAAGGAGGAAGTGGAAG +AAGTAGTTATAGAGGAATATCATCAAACAACTGAAGAAAATTCTCCACCTCCGTCATCATCTCCTGGAGT +CGGCGACATTGTAGAAAGCGTGGCCGCTGTAGAGCTCGATGATAGCGACGGGGATGATGAACCTATGGTA +CAAGTTGAAGCTGGTAAAGTAAATCATAGTGCTAGAAGCGATCTCTCTGACCTAAAGGTGGCTACCGACA +ATATCGTTAAAGATCTTAAGAAAATTATTACTAGAATCTCTGCAGTATCGACTGTTCTAGAGGATGTTCA +AGCAGCTGGTATCTCTAGACAATTTACTTCTATGACTAAAGCTATTACAACACTATCTGATCTAGTCACC +GAGGGAAAATCTAAAGTTGTTCGTAAAAAAGTTAAAACTTGTAAGAAGTAAATGCGTGCACTTTTTTATA +AAGATGGTAAACTGTTTACCGATAATAATTTTTTAAATCCTGTATCAGACGATAATCCAGCGTATGAGGT +TTTGCAACATGTTAAAATTCCTACTCATTTAACAGATGTAGTAGTATATGAACAAACGTGGGAAGAGGCA +TTAACTAGATTAATTTTTGTGGGAAGTGATTCAAAAGGACGTAGACAATACTTTTACGGAAAAATGCATA +TACAGAATCGCAATGCTAAAAGAGATCGTATTTTTGTTAGAGTATATAACGTTATGAAACGAATTAATTG +TTTTATAAACAAAAATATAAAGAAATCGTCCACAGATTCCAATTATCAGTTGGCGGTTTTTATGTTAATG +GAAACTATGTTTTTTATTAGATTTGGTAAAATGAAATATCTTAAGGAGAATGAAACAGTAGGGTTATTAA +CACTAAAAAATAAACACATAGAAATAAGTCCCGATGAAATAGTTATCAAGTTTGTAGGAAAGGACAAAGT +TTCACATGAATTTGTTGTTCATAAGTCTAATAGACTATATAAACCGCTATTGAAACTGACTGATGATTCT +AGTCCCGAAGAATTTCTGTTCAACAAACTAAGTGAACGAAAGGTATATGAATGTATCAAACAGTTTGGTA +TTAGAATCAAGGATCTCCGAACGTATGGAGTCAATTATACGTTTTTATATAATTTTTGGACAAATGTAAA +GTCCGTATCTCCTCTTCCATCACCAAAAAAGTTGATAGCATTAACTATCAAACAAACTGCTGAAGTGGTA +GGTCATACTCCATCAATTTCAAAAAGAGCTTATATGGCAACGACTATTTTAGAAATGGTAAAGGATAAAA +ATTTTTTAGACGTAGTATCTAAAACTACGTTCGATGAATTCCTATCTATAGTCGTAGATCACGTTAAATC +ATCTACGGATGGATGATAATAGATCTTTACACAAATAATTACAAGACCGATAAATGGAAATGGATAAACG +GATGAAATCTCTCGCTATGACAGCTTTCTTCGGAGAGCTAAACACGTTAGATATTATGGCATTGATAATG +TCTATATTTAAACACCATCCAAACAATACCATTTTTTCAGTGGATAAGGATGGTCAATTTATGATTGATT +TCGAATACGATAATTATAAGGCTTCTCAATATTTGGATCTGACCCTCACTCCGATATCTGGAAATGAATG +CAAGACTCACGCATCTAGTATAGCCGAACAATTGGCGTGTGTGGATATTATTAAAGAGGATATTAGCGAA +TATATCAAAACTACTCCCCGTCTTAAACGATTTATAAAAAAATACCGCAATAGATCATATACTCGTATCA +GTCGAGATACAGAAAAGCTTAAAATAGCTCTAGCTAAAGGCATAGATTACGAATATATAAAAGACGCTTG +TTAATAAGTAAATGAAAAAAAACTAGTCGTTTATAATAAAACACAATATGGATGCCAACATAGTATCATC +TTCTACTATTGCGACGTATATAGACGCTTTAGCGAAGAATGCTTCAGAATTAGAACAGAGGTCTACCGCA +TACGAAATAAATAATGAATTGGAACTAGTATTTATTAAACCGCCATTGATTACGTTGACAAATGTAGTAA +ATATCTCCACGATTCAGGAATCGTTTATTCGATTTACCGTTACTAATAAGGAAGGTATCAAAATTAGAAC +TAAGATTCCATTATCTAAGGTACATGGTCTAGATGTAAAAAATGTGCAGTTGGTAGATGCTATAGATAAC +ATAGTTTGGGAAAAGAAATCATTAGTGACGGAAAATCGTCTTCACAAAGAATGCTTGTTGAGACTATCAA +CAGAGGAACGTCATATATTTTTGGATTACAAGAAATATGGATCCTCTATCCGACTAGAATTAGTCAATCT +TATTCAAGCAAAAACAAAAAACTTTACGATAGACTTTAAGCTAAAATATTTTCTAGGATCTGGCGCTCAA +TCTAAAAGTTCTTTATTGCACGCTATTAATCATCCAAAGTCAAGGCCTAATACATCTCTGGAAATAGAAT +TTACACCTAGAGACAATGAAACAGTTCCATATGATGAACTAATAAAGGAATTGACGACTCTCTCGCGTCA +TATATTTATGGCTTCTCCAGAGAATGTAATTCTTTCTCCACCTATTAACGCACCTATAAAGACTTTTATG +TTGCCTAAACAAGATATAGTAGGTCTGGATCTGGAAAATCTATATGCCGTAACTAAGACTGACGGCATTC +CTATAACTATCAGAGTTACATCAAAAGGGTTGTATTGTTATTTTACACATCTTGGTTATATTATTAGATA +TCCAGTTAAGAGAACAATAGATTCCGAAGTAGTAGTCTTTGGTGAGGCAGTTAAGGATAAGAACTGGACC +GTATATCTCATTAAGCTAATAGAGCCCGTAAATGCAATCAGTGATAGACTAGAAGAAAGTAAGTATGTTG +AATCTAAACTAGTGGATATTTGTGATCGGATAGTATTCAAGTCAAAGAAATACGAAGGTCCGTTTACTAC +AACTAGTGAAGTCGTCGATATGTTATCTACATATTTACCAAAGCAACCAGAAGGTGTTATTCTGTTCTAT +TCAAAGGGACCTAAATCTAACATTGATTTTAAAATCAAAAAGGAGAATACTATAGACCAAACTGCAAATG +TAGTATTTAGGTACATGTCCAGTGAACCAATTATCTTTGGAGAGTCGTCTATCTTTATAGAGTATAAGAA +ATTTACCAACGATAAAGGCTTTCCTAAAGAATATGGTTCTGGTAAGATTGTGTTATATAACGGCGTTAAT +TATCTAAATAATATCTATTGTTTGGAATATATTAATACACATAATGAAGTGGGTATTAAGTCCGTTGTTG +TACCTATTAAGTTTATAGCAGAATTCTTAGTCAATGGAGAAATACTTAAACCTAGAATCGATAAAACCAT +GAAATATATTAACTCAGAAGACTATTATGGAAATCAACATAATATCATAGTCGAACATTTAAGAGATCAA +AGCATCAAAATAGGAGATGTCTTTAACGAGGATAAACTATCGGATGTTGGACATCAATACGCTGCCAACA +ACGATAAATTTAGATTAAATCCAGAAGTTAGTTATTTTACTAATAAACGAACTAGAGGGCCGTTGGGAAT +TTTATCAAACTACGTCAAGACTCTTCTTATTTCTATGTATTGTTCCAAAACATTTTTAGACGATTCCAAC +AAACGAAAGGTATTAGCGATTGATTTTGGAAACGGTGCTGACCTGGAAAAATACTTTTATGGAGAGATTG +CGTTATTGGTAGCGACGGATCCGGATGCTGATGCTATAGCTAGAGGAAATGAAAGATACAACAAATTAAA +TTCTGGAATTAAAACCAAGTACTACAAATTTGACTACATTCAGGAAACTATTCGATCCGATACATTTGTC +TCTAGTGTCAGAGAAGTATTCTATTTTGGAAAGTTTAATATCATTGACTGGCAGTTCGCTATTCATTATT +CTTTTCATCCAAGACATTATGCTACAGTCATGAATAACTTATCCGAACTAACTGCTTCTGGAGGCAAGGT +ATTAATTACTACCATGGATGGAGACAAATTATCAAAATTAACCGATAAAAAGACTTTTATAATTCATAAG +AATCTACCTAGTAGCGAAAACTATATGTCTGTAGAAAAAATAGCTGATGATAGAATAGTGGTATATAATC +CATCAACAATGTCTACTCCAATGACTGAATACATTATCAAAAAGAACGATATAGTCAGAGTGTTTAACGA +ATACGGATTTGTTCTTGTAGATAATGTTGATTTCGCTACAATTATAGAACGAAGTAAAAAGTTTATTAAT +GGCGCATCTACAATGGAAGATAGACCGTCTACAAGAAACTTTTTCGAACTAAATAGAGGAGCCATTAAAT +GTGAAGGTTTAGATGTCGAAGACTTACTTAGTTACTATGTTGTTTATGTCTTTTCTAAGCGGTAAATAAT +AATATGGTATGGGTTCTGATATCCCCGTTCTAAATGCATTAAATAATTCCAATAGAGCGATTTTTGTTCC +TATAGGACCTTCCAACTGTGGATACTCTGTATTATTAATAGATATATTAATACTTTTGTAGGGTAACAGA +GGTTCTACGTCTTCTAAAAATAAAAGTTTTATAACATCTGGCCTGTTCATAAATAAAAACTTGGCGATTC +TATATATACTCTTATTATCAAATCTAGCCATTGTCTTATAGATGTGAGCTACTGTAGGTGTACCATTTGA +TTTTCTTTCTAATACTATATATTTCTCTCGAAGAAGTTCTTGCAGATCATCTGGGAATAAAATACTACTG +TTGAGTAAATCAGTTATTTTTTTTATATCGATATTGATGGACATTTTTATAGTTAAGGATAATAAGTATC +CCAAAGTAGATAACGACGATAACGAAGTATTTATACTTTTAGGAAATCACAATGACTTTATCAGATCAAA +ATTAACAAAATTAAAGGAGCATGTATTTTTTTCTGAATATATTGTGACTCCAGATACATATGGATCTTTA +TGCGTCGAATTAAATGGGTCTAGTTTTCAGCACGGTGGTAGATATATAGAGGTGGAGGAATTTATAGATG +CTGGAAGACAAGTTAGATGGTGTTCTACATCCAATCATATATCTGAAGATATACACACTGATAAATTTGT +CATTTATGATATTTATACGTTTGATTCGTTCAAGAATAAACGATTGGTATTTGTACAGGTACCTCCATCA +TTAGGAGATGATAGCTATTTAACTAATCCGTTATTGTCTCCGTATTATCGTAATTCAGTAGCCAGACAAA +TGGTCAATGATATGATTTTTAATCAAGATTCATTTTTAAAATATTTATTAGAACATCTGATTAGAAGCCA +CTATAGAGTTTCTAAACATATAACAATAGTTAGATACAAGGATACCGAAGAATTAAATCTAACAAGAATA +TGTTATAATAGAGATAAGTTTAAGGCGTTTGTATTCGCTTGGTTTAACGGCGTTTCGGAAAATGAAAAGG +TACTAGATACGTATAAAAAGGTATCTGATTTGATATAATGAATTCAGTGACTATATCACACGCACCATAT +ACTATTACTTATCACGATGATTGGGAACCAGTAATGAGTCAATTGGTAGAGTTTTATAACGAAGTAGCCA +GTTGGTTGCTACGCGACGAGACGTCGCCTATTCCTGATAAGTTCTTTATACAATTGAAACAGCCGCTTAG +AAATAAACGAGTATGTGTGTGTGGTATAGATCCGTATCCAAAAGATGGAACTGGTGTACCGTTCGAATCA +CCAAATTTTACAAAAAAATCAATTAAGGAGATAGCTTCATCTATATCTAGATTAACCGGAGTAATTGATT +ATAAAGGTTATAACCTTAATATAATAGACGGGGTTATACCCTGGAATTATTACTTAAGTTGTAAATTAGG +AGAAACAAAAAGTCACGCGATTTACTGGGATAAGATTTCCAAGTTACTGCTACAGCATATAACTAAACAC +GTTAGTGTTCTTTATTGTTTGGGTAAAACAGATTTCTCGAATATACGGGCAAAGTTAGAATCCCCGGTAA +CTACCATAGTGGGATATCATCCAGCGGCCAGAGACCACCAATTCGAGAAAGATCGATCATTTGAAATTAT +CAACGTTTTACTGGAATTAGACAACAAGACACCTATAAATTGGGCTCAAGGGTTTATTTATTAATGCTTT +AGTGAAATTTTAACTTGTGTTCTAAATGGATGCGGCTATTAGAGGTAATGATGTTATCTTTGTTCTTAAG +ACTATAGGTGTCCCGTCAGCATGCAGACAAAATGAAGATCCAAGATTCGTAGAAGCATTTAAATGCGACG +AGTTAGAAAGATATATTGATAATAATCCAGAATGTACACTATTCGAAAGTCTTAGGGATGAGGAAGCATA +CTCTATAGTCAGAATTTTCATGGATGTAGATTTAGACGCGTGTCTAGACGAAATAGATTATTTAACGGCT +ATTCAAGATTTTATTATCGAGGTGTCAAACTGTGTAGCTAGATTCGCATTTACAGAATGCGGTGCCATTC +ATGAAAATGTAATAAAATCCATGAGATCTAATTTTTCATTGACTAAGTCTACAAATAGAGATAAAACAAG +TTTTCATATTATCTTTTTAGACACGTATACCACTATGGATACATTGATAGCTATGAAACGAACACTATTA +GAATTAAGTAGATCATCTGAAAATCCACTAACAAGATCGATAGACACTGCCGTATATAGGAGAAAAACAA +CTCTTCGGGTTGTAGGTACTAGGAAAAATCCAAATTGCGACACTATTCATGTAATGCAACCACCTCACGA +TAATATAGAAGATTACCTATTCACTTACGTGGATATGAACAACAATAGTTATTACTTTTCTCTACAACGA +CGATTGGAGGATTTAGTTCCTGATAAGTTATGGGAACCAGGGTTTATTTCGTTCGAAGACGCTATAAAAA +GAGTTTCAAAAATATTCATTAATTCTATAATAAACTTTAATGATCTCGATGAAAATAATTTTACAACGGT +ACCACTGGTCATAGATTATGTAACACCTTGTGCATTATGTAAAAAACGATCGCATAAACATCCGCATCAA +CTATCGTTGGAAAATGGTGCTATTAGAATTTACAAAACTGGTAATCCACATAGTTGTAAAGTTAAAATTG +TTCCGTTGGATGGTAATAAACTGTTTAATATTGCACAAAGAATTTTAGACACTAACTCTGTTTTATTAAC +CGAACGAGGAGACCATATAGTTTGGATTAATAATTCATGGAAATTTAACAGCGAAGAACCCTTGATAACA +AAACTAATTCTATCAATAAGACATCAACTACCTAAGGAATATTCAAGCGAATTACTCTGTCCGAGGAAAC +GAAAGACTGTAGAAGCTAACATACGAGACATGTTAGTAGATTCAGTAGAGACCGATACCTATCCGGATAA +ACTTCCGTTTAAAAATGGTGTATTGGACCTGGTAGACGGAATGTTTTACTCTGGAGATGATGCTAAAAAA +TATACGTGTACTGTATCGACCGGATTTAAATTTGACGATACAAAATTCGTCGAAGACAGTCCAGAAATGG +AAGAGTTAATGAATATCATTAACGATATCCAACCATTAACGGATGAAAATAAGAAAAATAGAGAGCTGTA +TGAAAAAACATTATCTAGTTGTTTATGTGGTGCTACCAAAGGATGTTTAACATTCTTTTTTGGAGAAACC +GCAACTGGGAAGTCGACAACCAAACGTTTGTTAAAGTCTGCTATCGGTGACCTGTTTGTCGAGACGGGTC +AAACAATTTTAACAGATGTATTGGATAAAGGACCTAATCCATTTATCGCTAATATGCATTTAAAAAGATC +TGTATTCTGTAGCGAACTACCTGATTTTGCATGTAGTGGATCAAAGAAAATTAGATCTGATAATATTAAA +AAGTTGACAGAACCTTGTGTCATTGGAAGACCGTGTTTCTCCAATAAAATTAATAATAGAAACCATGCGA +CAATCATTATCGATACTAATTACAAACCTGTCTTTGATAGGATAGATAACGCATTAATGAGAAGAATTGC +CGTCGTGCGATTCAGAACACACTTTTCTCAACCTTCTGGTAGAGAGGCTGCTGAAAATAATGACGCGTAC +GATAAAGTCAAACTATTAGACGAGGGATTAGATGGTAAAATACAGAATAATAGATATAGATTCGCATTTC +TATACTTGTTGGTTAAATGGTACAAAAAATATCATATTCCTATTATGAAACTATATCCTACACCGGAAGA +GATTCCGGACTTTGCATTCTATCTCAAAATAGGTACTCTGTTGGTATCTAGCTCTGTAAAGCATATTCCA +TTAATGACGGACCTCTCCAAAAAGGGATATATATTGTACGATAATGTGGTTACTCTTCCGTTGACTACTT +TCCAACAGAAAATATCCAAGTATTTTAATTCTAGACTATTTGGACACGATATAGAGAGCTTCATCAATAG +ACATAAGAAATTTGCCAATGTTAGTGATGAATATCTGCAATATATATTCATAGAGGATATTTCATCTCCG +TAAATATATGCCATATATTTATAGAATATATCACATATCTAAATGAATACCGGAATCATAGATTTATTTG +ATAATCATGTTGATAGTATACCAACTATATTACCTCATCAGTTAGCTACTTTAGATTATCTAGTTAGAAC +TATCATAGATGAGAACAGAAGCGTGTTATTGTTCCATATTATGGGATCGGGTAAAACAATAATCGCTTTG +TTGTTCGCCTTGGTAGCTTCCAGATTTAAAAAGGTTTACATTTTAGTACCGAACATCAACATCTTAAAAA +TTTTCAATTATAATATGGGTGTAGCTATGAACTTGTTTAATGACGAATTCATAGCTGAGAATATCTTTAT +TCATTCCACAACAAGTTTTTATTCTCTTAATTATAACGATAACGTCATTAATTATAACGGATTAAGTCGC +TACAATAACTCTATTTTTATCGTTGATGAGGCACATAATATTTTTGGGAATAATACTGGAGAACTTATGA +CCGTGATAAAAAATAAAAACAAGATTCCTTTTCTACTATTGTCTGGATCTCCCATTACTAACACACCTAA +TACGCTGGGTCATATTATAGATTTAATGTCCGAAGAGACGATAGATTTTGGTGAGATTATTAGTCGTGGT +AAGAAAGTAATTCAGACACTTCTTAACGAACGCGGAGTGAATGTACTCAAGGATTTGCTTAAAGGAAGAA +TATCATATTACGAAATGCCGGACAAAGATCTACCAACAATAAGATATCACGGACGTAAATTTCTAGATAC +TCGAGTAGTATATTGTCACATGTCTAAACTTCAAGAGAAAGATTATATGATTACTAGACGGCAGCTATGT +TATCATGAAATGTTTGATAAAAATATGTATAACGTGTCAATGGCAGTATTGGGACAACTTAATCTGATGA +ATAATTTAGATACGTTATTTCAGGAACAGGATAAGGAATTGTACCCAAATCTGAAAATAAATAATGGAGT +GTTATACGGTGAAGAATTGGTAACGTTAAACATTAGTTCCAAATTTAAGTACTTTATCAATCGGATACAG +ACACTCAAGGGAAAACACTTTATATACTTCTCTAATTCTACATATGGTGGATTGGTAATTAAATATATCA +TGCTCAGTAATGGATATTCTGAATATAATGGTTCTCAGGGAACTAATCCACATATGATAAACGGCAAACC +AAAAACATTTGCTATCGTTACTAGTAAAATGAAATCGTCTTTAGAGGATCTATTAGATGTGTATAATTCT +CCTGAAAACGATGATGGCAATCAATTGATGTTTTTGTTTTCGTCAAACATTATGTCTGAATCCTATACTC +TGAAAGAGGTAAGGCATATTTGGTTTATGACTATCCCGGATACTTTTTCTCAATACAACCAAATTCTTGG +ACGATCTATTAGAAAATTCTCTTACGTCGATATTTCTGAACCCGTTAATGTATATCTTTTAGCAGCCGTA +TATTCAGATTTCAATGACGAAGTGACGTCATTAAACGATTATACACAGGATGAATTGATTAATGTTTTAC +CCTTTGACATCAAAAAGCTGTTGTATCTAAAATTTAAGACTAAAGAAACGAATAGAATATACTCTATTCT +TCAAGAGATGTCTGAAACGTATTCTCTTCCACCACATCCATCAATTGTAAAAGTTTTATTGGGAGAATTG +GTCAGACAATTTTTTTATAATAATTCTCGTATTAAGTATAACGACTCCAAGTTACTTAAAATGGTTACAT +CAGTTATAAAAAATAAAGAAGACGCTAGGAATTACATAGATGATATTGTAAACGGTCACTTCTTTGTATC +GAATAAAGTATTTGATAAATCTCTTTTATACAAATACGAAAACGATATTATTACAGTACCGTTTAGACTT +TCCTACGAACCATTTGTTTGGGGAGTTAACTTTCGTAAAGAATATAATGTGGTATCTTCTCCATAAAACT +GATGAGATATATAAAGAAATAAATGTCGAGCTTTGTTACCAATGGATATCTTCCAGTTACATTGGAACCA +CATGAGTTGACGTTAGACATAAAAACTAATATTAGGAATGCCGTATATAAGGCGTATCTCCATAGAGAAA +TTAGTGGTAAAATGGCCAAGAAAATAGAAATTCGTGAAGACGTGGAATTACCTCTCGGTGAAATAGTTAA +TAATTCTGTAGTTATAAACGTTCCGTGTGTAATAACCTACGCATATTATCACGTTGGGGATATAGTCAGA +GGAACATTAAACATCGAAGATGAATCAAATGTAACTATTCAATGTGGAGATTTAATCTGTAAACTAAGTA +GAGATTCGGGTACTGTATCATTTAGCGATTCAAAGTACTGCTTTTTTCGAAATGGTAATGCGTATGATAA +CGGCATCGAAGTCTCCGCCGTTCTAATGGAGGCTCAACAAGGTACCGAATCTAGTTTTGTTTTTCTCGCG +AATATCGTTGACTCATAAGAAAGAGAATAGCGGTGAGTATAAATACGAATACTATGGCAATAATTGCGAA +TGTTTTATTCCCTTCGATATATTTTTGATAATATGAAAAACATGCCTCTCTCAAATCAGACAACCATTTC +ATAAAATAGTTCTCTCGCACTGGTGAGGTGGTTGCAGCTCGTATAATCTCCCCAGAATAATATACTTGCG +TGTCGTCGTTCAATTTATACGGATTTCTATAATTCTCTGTTATATAATGAGGTTTACCCTCATGATTAGA +CGACGACAATAGTGTTCTGAATTTAGATAGTTGATCAGAATGAATGTTTATTGGTGTTGGAAAAATTATC +CATGCTGCGTCTGCAGAGTGGTTGATAGTTGTTCCTAGATATGTAAAATAATCCAACGTACTAGGTAGCA +AATTGTCTAGATAAAATACTGAATCAAATGGCGCAGACATATTAGCGGATCTAATGGAATCCAATTGATT +GACTATCTTTTGAAAATATACATTTTTATGATCTGATACTTGTAAGAATATAGCAATAATGATAATTCCA +TCATCGTGTTTTTTTGCCTCTTCATAAGAACTATATTTTTTCTTATTCCAATGAACCAGATTAATCTCTC +CAGAGTATTTGTATACATCTATCAAGTGATTGGATCCATAATCGTCTTCCTTTCCCCAATATATATGTAT +TGTTGATAACACATATTCATTGGGGAGAAACCCTCCACTTATATATCCTCCTTTAAAATTAATCCTTACT +AGTTTTCCAGTATTCTGGATAGTGGTTGGTTTCGACTCATTATAATGTATGTCTAACGTCTTCAATCGCG +CGTCAGAAATTGCTTTTTTAGTTTCTATATTAATAGGAGATAGTTGTTGAGGCATAGTAAAAATGAAATG +ATAACTGTCTAGAAATAGCTCTTAGTATGGGATTTACAATGGATGAGGAAGTGATATTTGAAACTCCTAG +AGAATTAATATCTATTAAACGAATAAAAGATATTCCAAGATCAAAAGACACGCACGTGTTTGCTGCGTGT +ATAACAAGTGACGGATATCCGTTAATAGGAGCTAGAAGAACTTCATTCGCATTCCAGGCGATATTATCTC +AACAAAATTCAGATTCTATCTTTAGAGTATCCACTAAACTATTACGGTTTATGTACTACAATGAACTAAG +AGAAATCTTTAGACGGTTGAGAAAAGGTTCTATCAACAATATCGATCCTCACTTCGAAGAGTTAATATTA +TTGGGTGGTAAACTAGATAAAAAGGAATCTATTAAAGATTGTTTAAGAAGAGAATTAAAAGAGGAAAGTG +ATGAACATATAACAGTAAAAGAATTCGGAAATGTAATTCTAAAACTTACAACGAGTGATAAATTATTTAA +TAAAGTATATATAGGTTATTGCATGGCATGTTTTATTAATCAATCGTTGGAGGATTTATCACATACTAGT +ATTTACAATGTAGAAATTAGAAAGATTAAATCGTTAAATGATTGTATTAACGACGATAAATACGAATATC +TGTCTTATATTTATAATATACTAATTAATAGTAAATGAGCTTTTACAGATCTAGTATAATTAGTCAGATT +ATTAAGTATAATAGACGACTAGCTAAGTCTATTATTTGCGAGGATGACTCTCAAATTATTACACTCACGG +CATTCGTTAACCAATGCCTATGGTGTCATAAACGAGTATCCGTGTCCGCTATTTTATTAACTACTGATAA +CAAAATATTAGTATGTAACAGACGAGATAGTTTTCTCTATTCTGAAATAATTAGAACTAGAAACATGTAT +AGAAAGAAACGATTATTTCTGAATTATTCCAATTATTTGAACAAACAGGAAAGAAGTATACTATCGTCAT +TTTTTTCTCTAGATCCAGCTACTGCTGATAATGATAGAATAAACGCTATTTATCCGGGTGGTATACCCAA +AAGGGGTGAGAACGTTCCAGAGTGTTTATCCAGGGAAATCAAAGAAGAAGTTAATATAGACAATTCTTTT +GTATTCATAGACACTCGTTTTTTTATTCATGGTATCATAGAAGATACCATTATTAACAAATTTTTTGAGG +TAATTTTCTTTGTTGGACGAATATCTCTAACGAGTGATCAAATTATTGATACCTTTAAAAGTAATCATGA +AATAAAGGATCTAATATTTTTAGATCCAAATTCAGGTAATGGACTCCAATACGAAATTGCAAAATATGCT +CTAGATACTGCAAAACTTAAATGTTACGGTCATAGAGGATGTTATTATGAATCATTAAAAAAATTAACTG +AGGATGATTGATTAGAAAATATAAATTAATTTACCATCGTGTATTTTTATAACGGGATTGTCTGGCATAT +CATGTAGATAGTTACCGTCTACATCGTATACTCTACCATCTACGCCTTTAAATCCTCTATTTATTGATAT +TAATCTATTAGAATTGGAATACCAAATATTAGTACCCTCAATTAGTTTATTGGTAATATTTTTTTTAGAC +GATAGATCGATGGCTCTTGAAACCAAGGTTTTCCAACCGGACTCATTGTCTATCGGTGAGAAGTCTTTTT +CATTAGCATGAATCCATTCTAATGATGTATGTTTAAACACTCTAAACAATTGTACAAATTCTTTTGATTT +GTTTTGAATGATTTCAAATAGGTCTTCGTCTACAGTAGGCATACCATTAGATAATCTAGCCATTATAAAG +TGCACGTTTACATATCTACGTTCTGGAGGAGTAAGAACGTGACTATTGAGACGAATGGCTCTTCCTACTA +TCTGACGAAGAGACGCCTCGTTCCATGTCATATCTAAAATGAAGATATCATTGATTGAGAAGAAACTAAT +ACCCTCGCCTCCGCTAGAAGAGAATACGCATGTTTTAATGCATTCTCCGTTAGTGTTTGATTCTTGGTTA +AACTCAGCCACCGCCTTGATTCTAGTATCTTTTGTTCTAGATGAGAACTCTATATTAGAGATACCAAAGA +CTTTGAAATATAGTAATAAGATTTCTATTCCTGACTGATTAACAAATGGTTCAAAGACTAGACATTTACC +ATGGGATGCTAATATTCCCAAACATACATCTATAAATTTGACGCTTTTCTCTTTTAATTCAGTAAATAGA +GAGATATCAGCCGCAATAGCATCCCCTCCCAATAGTTCTCCCTTTTTAAAGGTGTCTAATGCGGATTTAG +AAAATTCTCTATCTCTTAATGAATTTTTAAAATCATTATATAGGGTTGCTATCTCTTGTGCGTATTCTCC +CGGATCACGATTTTGTCTTTCAGGAAAGCTATCGAATGTAAACGTAGTAGCCATACGTCTCAGAATTCTA +AATGATGATATACCAGTTTTTATTTCTGCGAGTTTAGCCTTTTGATAAATCTCTTCTTGCTTTTTTGACA +TATTAACGTATCGCATTAATACTGTTTTCTTAGCGAATGATGCAGACCCTTCCACATCATCAAAAATAGA +AAACTCGTTATTAACTATGTACGAACATAGGCCTCCTAGTTTGGAGACTAATTCTTTTTCATCGACTAGA +CGTTTATTCTCAAATAGCGATTGGTGTTGTAAGGATCCTGGTCGCAGTAAGTTAACCAACATGGTGAATT +CTTGCACACTATTAACGATAGGTGTAGCCGATAAACAAATCATCTTATGGTTTTTTAACGCAATGGTCTT +AGATAAAAAATTATATACTGACCGAGTAGGACGGATCTTACCATCTTCTTTGATTAATGATTTAGAAATG +AAGTTATGACATTCATCAATGATGACGCATATTCTACTCTTGGAATTAATAGTTTTGATATTAGTAAAAA +ATTTATTTCTAAAATTTTGATCATCGTAATTAATAAAAATACAATCCTTCGTTATCTCTGGAGCGTATCT +GAGTATAGTGTTTATCCAAGGATCTTCTATCAAAGCCTTTTTTACCAATAAGATAATTGCCCAATTCGTA +TAAATATCCTTAAGATGTTTGAGAATATATACAGTAGTCATTGTTTTACCGACACCTGTTTCATGGAACA +ATAAAAGAGAATGCATACTGTCTAATCCTAAGAAAACTCTTGCTACAAAATGTTGATAATCCTTGAGGCG +TACTACGTCTGACCCCATCATTTCAACGGGCATATTAGTAGTTCTGCGTAAGGCATAATCGATATAGGCC +GCGTGTGATTTACTCATTTATGAGTGATAAGTAATAACTATGTTTTAAAAATCACAGCAGTAGTTTAACT +AGCCTTCTCTGATGTTTGTTTTCGATACTTTTTGAATCAGAAGTCATACTAGAATAAAGCAGCGAGTGAA +CGTAATAGAGAGCTTCGTATACTCTATTCGAAAACTCTAAGAACTTATTAATGAATTCCGTATCCACTGG +ATCGTTTAAAATACTAAATTGAACAGTGTTCACATCCTTCCAAGACGAAGACTTAGTGACGGACTTAACA +TGAGACATAAATAAATCCAAATTTTTTTTATAAACATCACTAGCCACCATAATGGCGCTATCTTTCAACC +AACTATCGCTTACGCATTTTAACAGTCTAACATTTTTAAAGAGACTACAATATATTCTCATAGTATCGAT +TACACCTCTACCGAATAGAGTGGGAAGTTTAATAATACAATATTTTTCGTTTACAAAATCAAATAATGGT +CGAAACACGTCGAAGGTTAACATCTTATAATCGCTAATGTATAGATTGTTTTCAGTGAGATGATTATTAG +ATTTAATAGCATCTCGTTCACGTTTGAACAGTTTATTGCGTGCGCTGAGGTCGGCAACTACGGCATCCGC +TCTAGTACTCCTCCCATAATACTTTACGCTATTAATCTTTAAAATTTCATAGACTTTATCTAGATCGCTT +TCTGGTAACATGATATCATGTGTAAAAAGTTTTAACATGTCGGTCGGCATTCTATTTAGATCATTAACTC +TAGAAATCTGAAGAAAGTAATTAGCTCCATATTCCAGACTAGGTAATGGGCTTTTACCTAAAGACAAGTT +AAGTTCTGGCAATGTTTCATAAAATGGAAGAAGGACATGTGTCCCCTCCCGGATATTTTTTACAATTTCA +TCCATTTACAACTCTATAGTTTGTTTTCATTATTATTAGTTATTATCTCCCATAATCTTGGTAATACTTA +CACCTTGATCATAAGATACCTTATACAGGTCATTACATACAACTACCAATTGTTTTTGTACATAATAGAT +TGGATGATTGATATCCATGGTGGAATAAACTACTCGAACAGATAGTTTATCTTTCCCCCTAGATACATTG +GCCGTAATAGTTGTCGGCCTAAAGAATATCTTTGGTGTAAAGTTAAAAGTTAGGGTTCTTGTTCCATTAT +TGCTTTTTGTCAGTAGTTCGTTATAAATTCTCGAGATGGGCCCGTTCTCTGAATATAGAACATCATTTCC +AAATCTAACTTCTAGTCTAGAAATAATATCGGTCTTATTTTTAAAATCTATTCCCTTGATGAATGGATCG +TTAATAAACAAATCCTTGGCCTTTGATTCGGCTGATCTATTATCTCCGTTATAGACGTTACGTTGACTAG +TCCAAAGACTTACAGGAATAGATGTATCGATGATGTTGATAGTATGTGATATGTGAGCAAAGACTGTTCT +CTTGGTGGCGTCGCTATATGTTCCAGTAATGGCGGAAAACTTTTTAGAAATGTTATATATAAAAGAATTT +TTTCGGGTTCCAAACATTAACAGATTAGTATGAAGATAAACACTCATATTATCAGGAACATTATCAATTT +TTACATAAACATCGGCATCTTGAATAGAAACAACACCATCTTCTGGAACCTCTACGATCTCGGCAGATTC +CGGATAACCAGTCGGTGGACCATCACTAACAATAACTAGATCATCCAACAATCTACTCACATATGCGTCT +ATATAATCTTTTTCATCTTGTGAGTACCCTGGATACGAAATAAATTTGTTATCAGTATTTCCATAATAAG +GTTTAGTATAAACAGAGAGAGATGTTGCTGCATGAACTTCGGTTACTGTCGCCGTTGGTTGGTTTATTTG +ACCTATTACTCTCCTAGGTTTCTCTATAAATGATGGTTTAATTTGTACATTCTTAACCATATATCCAATA +AAGCTCAATTCAGGAACATAAACAAATTCTTTGTTGAACGTTTCAAAGTCGAACGAAGAGTCACGAATAA +CGATATCGGATACTGGATTGAAGGTCACCGTTACGGTAATTTTTGAATCGGATAGTTTAAGACTACTGAA +TGTATCTTCCACATCAAACGGAGTTTTAATATAAACGTATACTGTAGATGGTTCTTTAATAGTGTCATTA +GGAGTTAGGCCAATAGAAATATCATTAAGTTCACTAGAATATCCAGAATGTTTCAAAGCAATTGTATTAT +TGATACAATTATTATATAATTCTTCGCCCTCAATTTCCCAAATAACACCGTTACACGAAGAGACAGATAC +ATGATTAATACATTTATATCCAACATATGGCACGTAACCGAATCTTCCCATACCTTTAACTTCTGGAAGT +TCCAAACTCAGAACCAAATGATTAAGCGCAGTAATATACTGATCCCTAATTTCGAAGCTAGCGATAGCCT +GATTGTCTGGCCCATCGTTTGTCATAACTCCGGATAGAGAAATATATTGCGGCATATATAAAGTTGGAAT +TTGACTATCAACTGCGAAGACATTAGACCGTTTAATAAAGTCATCCCCACCGATCAAAGAATTAATGATA +GTATTATTCATTTTCTATTTAAAATGGAAAAAGCTTACAATAAACTCCGTAGAGAAATATCTATAATTTG +TGAGTTTTCCTTAAAGTAACAGCTTCCGTAAACACCGTCTTTATCTCTTAGTAAGTTTATTGTATTTATG +ACCTTTTCCTTATCTTCATAGAATACTAAAGGCAATAAAGAAATTTTTGGTTCTTCTCTAAGAGCTACGT +GAGACTTAACCATAGACGCCAACGAATCCCTACATATTTTAGAACAGAAATACCCAACTTCACCACCCTT +GAATGTCTCAATACTAATAGGTCTAAAAACCAAATCTTGATTACAAAACCAACACTTATCAATTACACTA +TTTGTCTTAATAGACATATCTGCCATAGATTTATAATACTTTGGTAGTATACAAGCGAGTGCTTCTTCTT +TAGCGGGCTTAAAGACTGCTTTAGGTGCTGAAATAACCACATCTGGAAGACTTACTCGCTTAGCCATTTA +ATTACGGAACTATTTTTTTATACTTCTAATGAACAAGTAGAAAACCTCTCATCTACAAAAACATACTCGT +GTCCATAATCCTCTACCATAGTAACACGTTTTTTAGATCTCATATGTGCTAAAAAGTTTTCCCATACTAA +TTGGTTACTATTATTTTTCGTATAATTTTTAACAGTTTGAGGTTTTAGATTTTTAGTTACAGAAGTGATA +TCGAATATTTTATCCAAAAAGAATGAGTAATTAATTGTCTTAGAAGGAGTGTTTTCTTGGCAAAAGAATA +CCAAGTGCTTAAATATTTCTACTACTTCATTAATCTTTTCTGTACTCAGATTCAGTTTCTCATCTTTTAC +TTGATTGATTATTTCAAAGACTAACTTATAATCCTTTTTATTTATTCTCTCGTTAGCCTTAAGAAAACTA +GATACAAAATTTGCATCTACATCATCCGTGGATATTTGATTTTTTTCCATGATATCCAATAGTTCCGAGA +TAATTTCTCCAGAACATTGATGAGACAATAATCTCCGCAATACATTTCTCAAATGAATAAGTTTATTAGA +CACGTGGAAGTTTGACTTTTTTTGTACCTTTGTACATTTTTGAAATACAGACTCGCAAAAAATACAATAT +TCATATCCTTGTTCAGATACTATACCGTTATGTCTACAACAGCTACATAATCGTAGATTCATGTTAACAC +TCTACGTATCTCGTCGTCCAATATTTTATATAAAAACATTTTATTTCTAGACGTTGTCAGAAAATCCTGT +AATATTTTTAGTTTTTTTGGTTGTGAATAAAGTATCGCCCTAATAATATTGGTACCGTCTTCCGACAATA +TAGTAGTTAAATTATCCGAGCATGTAGAAGAACACCGCTTAGGCGGATTCAGTACAATGTTATATTTTTC +GTACCAACTCATTTAAATATCATAATCTAAAATAGTTCTGTAATATGTCTAGCGCTAATATATTGATCAT +AATCCTGTGCATAAATTAAGATACAACAATGTCTTGAAATCATCGACATGGCTTCTTCCATAGTTAGAAG +ATCATCGTCAAAGTTAGCAACGTGATTCATCAACATTTGCTGTTTTGAGGCAGCAAATACTGAACCATCA +CCATTCAACCATTCATAAAAACCATCGTCTGAATCCATTGATAATTTCTTGTACTGGTTTTTGAGAGCTC +GCATCAATCTAGCATTTCTAGCTCCCGGATTGAAAACAGAAAGAGGATCGTACATCCAAGGTCCATTTTC +TGTAAATAGAATCGTATAATGTCCCTTCAAGAAGATATCAGACGATCCACAATCAAAGAATTGGTCTCCG +AGTTTGTAACAGACTGCGGACTTTAACCTATACATGATACCGTTTAGCATGATTTCTGGTGATACGTCAA +TCGGAGTATCATCTATTAGAGATCTAAAGCCGGTGTAACATTCTCCGCCAAACATATTCTTATTCTGACG +TCGTTCTACATAAAACATCATTGCTCCATTAACGATAACAGGTGAATGAACAGCACTACCCATCACATTA +GTTCCCAATGGATCAATGTGTGTAACTCCAGAACATCTTCCATAGCCTATGTTAGGAGGAGCGAACACCA +CTCTTCCACTATTGCCATCGAATGCCATAGAATAAATATCCTTGGAATTGATAGAAATCGGACTGTCGGA +TGTTGTTATCATCTTCATAGGATTAACAACGATGTATGGTGCAGCCTGAAGTTTCATATCGTAACTGATG +CCGTTCATAGGTCTAGCCACAGAAACCAACGTAGGTCTAAATCCAACTATAGACAAAATAGAAGCTAATA +TCTGTTCCTCATCTGTCATAACTTGAGAGCATCCAGTATGAATAATCTTCATTAGATGGGGATCTACCGC +ATCATCATCGTTACAATAAAAAATTCCCATTCTAATGTTCATAATTGCTTTTCTAATCATGGTATGAATG +TTTGCTCTCTGAATCTCTGTGGAAATTAGATCTGATACACCTGTAATCACTATCGGATTATCCTCCGTAA +GACGATTAACCAACAACATATAATTATAAGACTTTACTCTTCTAAATTCATAAAGTTGCTGGATTAGACT +ATATGTGTCTCCATGTACATACGCGTTCTCGAGCGCAGGAAGTTTAATACCGAATAGTGCCATCAGAATA +GGATGAATGTAGTAATTAGTTTCTGGTTTTCTATAAATAAAAGACAAATCTTGTGAACTAGACATATCGG +TAAAATGCATGGATTGGAATCGTGTAGTCGACAGAAGAATATGATGATTAGATGGAGAGTATATTTTATC +TAACTCTTTGAGTTGGTCACCGATTCTAGGACTAGCTCGAGAATGAATAAGTACTAAGGGATGAGTACAT +TTCACAGAAACACTGGCGTTGTTCAACGTACTCTTTACATGGGAAAGGAGTTGAAATAGCTCGTTTCTAT +TTGTCCTGACAATATTTAGTTTATTCATAATATTAAGCATATCCTGAATAGTAAAGTTAGATGTGTCATA +CTTGTTAGTAGTTAGATATTTAGCAATTGCATTCCCATCATTTCTCAATCTCGTACTCCAATCATGTGTG +GATGCTACTTCGTCGATGGAAACCATACAATCCTTTTTGATAGGCTGTTGAGATTGATCATTTCCTGTAC +GTTTAGGTTTGGTACGTTGATTTCTAGCCCCTGCTGATATAAAGTCATCGTCTACAATTTGGGATAATGA +ATTACATACACTACAAGACAAAGATTTATCAGAAGTGTGAATATGATCTTCATCTACCAAAGAAAGAGTT +TGATTAGTATAACTAGATTTTAGTCCCGCGTTAGATGTTAAAAAAACATCGCTATTGACCACGGCTTCCA +TTATTTATATTCGTAGTTTTTACTCGAAAGCGTGATTTTAATATCCAATCTTATTACTTTTGGAATCGTT +CAAAACCTTTGACTAGTTGTAGAATTTGATCTATTGCCCTACGCGTATACTCCCTTGCATCATATACGTT +CGTCACCAGATCGTTTGTTTCGGCCTGAAGTTGACGCATATCTTTTTCAACACTCGACATGAGATCCTTA +AGGGTCATATCGTCTAGATTTTGTTGAGATGCTGCTCCTGGATTTGGATTTTGTTGTGCTGTTGTACATA +CTGTACCACCAGTAGGTGTAGGAGTACATACAGTGGCCACAATAGGAGGTTGAAGAGGTGTAACCGTTGG +AGTAGTACAAGAAATACTTCCATCCGATTGTTGTGTACATGTGGTTGTTGGTAACGTCTGAGAAGGTTGG +GTAGATGGCGGTGTCGTCATCTTTTGATCTTTATTAAATTTAGAGATAATATCCTGAACAGTATTGCTCG +GCGTCAACGCTGGAAGGAGTGTACTCGCCGGCGCATCAGTATCTGTAGACAACCAATCAAAAAGATTAGA +CATATCAGATGATGTATTAGTTTGTTGACGTGGTTTTAGTACAGGAGCAGTACTACTAGGTAGAAGAATA +GGAGCCGGTGTAGGTGTCGGAACCGGCTGTGGAGTTATATGAATAGTTGGTTGTAGCGGTTGGGTAGGCT +GTCTGCTGGCGGTCATCATATTATCTCTAGCTAGTTGTTCTCGCAACTGTCTTTGATAATACGACTCTTG +AGACTTTAGTCCTATTTCAATCGCTTCATCCTTTTTCGTATCCGGATCCTTTTCTTCAGAATAATAGATT +GACGACTTTGGTGTAGAGGATTCTGCCAGCCCCTGTGAGAACTTGTTAAAGAAGTCCATTTAAGGCTTTA +AAATTGAATTGCGATTATAAGATTAAATGGCAGACACGGACGATATTATCGACTATGAATCCGATGATCT +CACCGAATACGAGGATGATGAAGAAGATGGAGAGTCACTAGAAACTAGTGATATAGATCCCAAATCTTCT +TATAAGATTGTAGAATCAACATCCACTCATATAGAAGATGCGCATTCCAATCTTAAACATATAGGGAATC +ATATATCTGCTCTTAAACGACGCTATACTAGACGTATAAGTCTATTTGAAATAGCGGGTATAATAGCAGA +AAGCTATAACTTGCTTCAACGAGGAAGATTACCTCTAGTTTCAGAATTTTCTGACGAAACGATGAAGCAA +AATATGCTACATGTAATTATACAAGAGATAGAGGAGGGTTCTTGTCCTATAGTCATCGAAAAGAACGGAG +AATTGTTGTCGGTAAACGATTTTGATAAAGATGGTCTAAAATTCCATCTAGACTATATTATCAAAATTTG +GAAACTTCAAAAACGATATTAGAATTTATACGAATATCGTTCTCTAAATGTCACAATCAAGTCTCTCATA +TTCAGCAGTTTATTGTCGTACTTTATATCGTGTTCATTAACGATATTTTGCAAAATAGTAATGATTCTAT +CTTCCTTCGATAGATATTCTTCAGAGATTATTGTCTTATATTCTTTCTTGTTATCCGATATGAATTTGAT +AAGACTTTGAACATTATTAATACCCGTCTGTTTAATTTTTTCTATAGATATTTTAGTTTTGGTAGATTCT +ATGGTGTCTGTTAATAGGCATCCAACATCGACATTCGACGTCAATTGTCTATAAATCAGAGTATAAATTT +TAGAAATAACATTAGCAAATTGTTGTGCGTTGATGTCGTTATTCTGAAACAGTATGATTTTAGGTAGCAT +TTTCTTAACAAAGAGAACGTATTTATTGTTACTCAGTTGAACAGATGATATATCCAGATTACTAACGCAT +CTGATTCCATATACCAAACTTTCAGAAGAAATGGTGTACAATTGTTTGTATTCATTCAATGTCTCCTTTT +CAGAAATTAGTTTAGAGTCGAATACTGCAATAATTTTCAAGAGATAGTTTTCATCAGATAAGATTTTATT +TAGTGTAGATATGATAAAACTATTGTTTTGTTGGAGAACTTGATACGCCGCATTCTCTGTAGTCGACGCT +CTCAAATGGGAAACAATCTCTATTATTTTTTTGGAATCGGATACTATATCTTCGGTATCTTGACGCAGTC +TAGTATACATAGAGTTAAGAGAAATTAGAGTTTGTACATTAAGCAACATGTCTCTAAATGTGGCTACAAA +CTTTTCTTTTTCCACATCATCTAGTTTATTATATACCGATTTCACAACGGCACCAGATTTAAGGAACCAG +AATGAAAAACTCTGATAACTACAATATTTCATCATAGTTACGATTTTATCATCTTCTATAGTTGGTGTGA +TAACACATACCTTTTTCTCCAAGACTGGAACCAACGTCATAAAAATGTTTAAATCAAAATCCATATCAAC +ATCTGATGCGCTAAGACCAGTCTCGCGTTCAAGATTATCTTTACTAATGGTGACGAACTCATCGTATAGA +ACTCTAAGTTTGTCCATTATTTATTTACAGATTTAGTTGTTTAATTTATTTGTGCTCTTCCAGAGTTGGG +ATAGTATTTTTCTAACGTCGGTATTATATTATTAGGATCTACGTTCATATGTATCATAATATTAATCATC +CACGTTTTGATAAATCTATCTTTAGCTTCTGAAATAACGTATTTAAACAAAGGAGAAAAATATTTAGTTA +CGGCATCAGACGCGATAACATTTTTTGTAAATGTAACGTATTTAGACGACAGATCTTCGTTAAAAAGTTT +TCCATCTATGTAGAATCCATCGGTTGTTAACACCATTCCCGCGTCAGAGTGAATAGGAGTTTGAATAGTT +TGTTTTGGAAATAGATCCTTCAATAACTTATAGTTGGGTGGGAAAAAATCGATTTTATCACTAGACTCTT +TCTTTTTTACTATCATTACCTCATGAACTATTTCTTGAATGAGTATATGTATTTTCTTTCCTATATCGGT +CGCGTTCATTGGAAAATATATCATGTCGTTAACTATAAGAATATTTTTATCCTCGTTTACAAACTGAATA +ATATCAGATATAGTTCGTAAACGAACTATATCATCACCAGCACAACATCTAACTATATGATATCCACTAG +TTTCCTTTAGCCGTTTATTATCTTGTTCCATATTAGCAGTCATTCCATCATTTAAGAAGGCGTCAAAGAT +AATAGGGAGAAATGACATTTTGGATTCTGTTACGACTTTACCAAAATTAAGGATATACGGACTTACTATC +TTTTTCTCAACGTCGATTTGATGAACACACGATGAAAATGTACTTCGATGAGATTGATCATGTAGAAAAC +AACAAGGGATACAATATTTCCGCATATCATGAAATATATTAAGAAATCCCACTTTATTATATTTCCCCAA +AGGATCAATGCATGTAAACATTATACCGTTATCATTAATAAAGACTTCTTTCTCATCGGATCTGTAAAAG +TTGTTACTGATTTTTTTCATTCCAGGATCTAGATAATTAATAATAATGGGTTTTCTATTCTTATTCTTTG +TATTTTGACATATCCTAGACCAGTAAACAGTTTCCACTTTGGTAAAATCAGAAGACTTTTGAACGCTATT +AAACATGGCATTAATGGCAATAACTAAAAATGTAAAATATTTTTCTATGTTAGGAATATGGTTTTTCACT +TTAATAGATATATGGTTTTTTGCCAAAATGATAGATATTTTTTTATCCGATGATAGTAAAATATTATTAG +TCGCCGTCTCTATAAAAATGAAGCTAGTCTCGATATCCAATTTTATTCTAGAATTGATAGGAGTCGCCAA +ATGTACCTTATACGTTATATCTCCCTTGATGCGTTCCATTTGTGTATCTATATCGGACACAAGATCTGTA +AATAGTTTTACGTTATTAATCATCACGGTATCGCCATCGCTAGATAATGCTAATGTACTATCCAAGTCCC +AAATGGAGAGATTTAACTGTTCATCGTTTAGAATAAAATGATTACCTGTCATATTAATAAAGTGTTCATC +GTATCTAGATAACAACGACTTATAATTAATGTCCAAGTCTTGAACTCGCTGAATGATCTTTTTTAACCCA +GTTAGTTTTAGATTGGTACGAAATATATTGTTAAACTTTGATTCTACAGTAATGTCCAAATCTAGTTGTG +GAAATACTTCCATCAACATTGTTTCAAACTTGATAATATTATTATCTACATCTTCGTACGATCCAAATTC +CGGAATAGATGTATCGCACGCTCTGGCCACCCAGATAACCAAAAAGTCACACGCTCCAGAATATACATTG +TATAAAAAGCTATCGTTTTTTAGTAGTGTTTTTTTCTGAGTATATACGAAAGGATTAAAAATAGTATTAT +CAACGTAACTATATTCCAAATTATTCTTATGAGAATAGATAATAATATCGTCCTTAATATCTAACAAATT +TCCTAAATATCCCTTTAATTGAGTCATTCGAAGCGTTAATAAAATATGTCTCTTAACTATTTCCGGCCGT +TGTATATTTAAATGACTTCGTAAGAAATAATATATAGGCGACTTCTCATCTATGTAATCATATGGAGTGA +GATATAGGGCTCGTTCTACCTCCTGCCCCTTACCCACCTGTAATACCAATTGCGGACTCACTATATATCG +CATATTTATATCGTGGGGTAAAGTGAAAATCTACTACCGATGATGTAAGTCTTACAATGTTCGAACCAGT +ACCAGATCTTAATTTGGAGGCCTCCGTAGAACTAGGGGAGGTAAATATAGATCAAACAACACCTATGATA +AAGGAGAATAGCGGTTTTATATCCCGTAGTAGACGTCTATTCGCCCATAGATCTAAGGATGATGAGAGAA +AACTAGCACTACGATTCTTTTTACAAAGACTTTATTTTTTAGATCATAGAGAGATTCATTATTTGTTCAG +ATGCGTCGACGCTGTAAAAGACGTCACTATTACCAAAAAAAATAACATTATCGTGGCGCCTTATATAGCA +CTTTTAACTATCGCATCAAAAGGATGCAAACTTACAGAAACAATGATTGAAGCATTCTTTCCAGAACTAT +ATAATGAACATAGTAAGAAATTCAAATTCAACTCTCAAGTATCCATCATCCAAGAAAAACTCGGATACCA +GTCTGGAAACTATCACGTTTATGATTTTGAACCGTATTACTCTACAGTAGCTCTGGCTATTCGAGATGAA +CATTCATCTGGCATTTTTAATATCCGTCAAGAGAGTTATCTTGTAAGTTCATTATCTGAAATAACATATA +GATTTTATCTAATTAATCTAAAATCTGATCTTGTTCAATGGAGTGCTAGTACGGGCGCTGTAATTAATCA +AATGGTAAATACTGTATTGATTACAGTGTATGAAAAATTACAACTGGCCATAGAAAATGATTCACAATTT +ACATGTTCATTGGCTGTGGAATCAGAACTTCCAATAAAATTACTTAAAGATAGAAATGAATTATTTACAA +AATTCATTAACGAGTTAAAAAAGACCAGTTCATTCAAGATAAGCAAACGTGATAAGGATACGCTATTAAA +ACATTTTACTTATGACTGGAGTTAGAATTTATAGACGACACATTTCGTTTATCATTGTTACTATTACTAT +CATTATTAGTATTCTTCTTGTCATCTTGTTCAGAAATATACAGCAATGCTATACCTAATACTAAATACAT +TATCATGCTTGCAATGGCTCTAACAACAACGAACCAAAATGAATTTGGTCGTAGCTTTTGTTCACAAAAA +TACATAAAGAAATGTCTACATAAATCTATGGCGCCATTGGCTACTTGAAATAGCGCCAGTCCTCCTACAG +ATTTTAATATAGCTGTATAACATGACATTTATTCATCATCAAAAGAGACAGAGTCACCATCTGTCATATT +TAGATTTTTTTTCATGTGTTCAAAGTATCCTCTACTCATTTCATTATAATAGTTTATCATGCTTAGAATT +TTAGGACGGATCAATGAGTAAGACTTGACTAGATCGTCAGTAGTAATTTGTGCATCATCTATTCTGCATC +CGCTTCGTCGAATAATGTATAGCATCGCTTTGAGATTCTCCATAGCTATCAAGTCTTTATATAATGACAT +GGAAATATCTGTGAATGCTTTATACTTCTCCAACATCGATGCCTTAACATCATCACATACTTTAGCATTG +AAAATACGTTCTATTGTGTAGATGGATGTAGCAAGATTTTTAAACAACAATGCCATCTTACATGATGATT +GTCTCAAGTCTCCAATCGTTTGTTTAGAACGATTAGCTACAGAGTCCAATGCTTGGCTAACTAGCATATT +ATTATCTTTAGAAATTGTATTCTTCAATGAGGCGTTTATCATATCTGTGATTTCGTTAGTCATATTACAG +TCTGACTGGGTTGTAATGTTATCCAACATATCACCTATGGATACGGTACACGTACCAGCATTTGTAATAA +TCCTATCTAAGATGTTGTATGGCATTGCGCAGAAAATATCTTCTCCTGTAATATCTCCACTCTCGATAAA +TCTACTCAGATTATTCTTAAATGCCTTATTCTCTGGAGAAAAGATATCAGTGTCCATCATTTCATTAATA +GTATACGCAGAAAAGATACCACGAGTATCAATTCTATCCAAGATACTTATCGGTTCCGAGTCACAGATAA +TTGTTTCCTCTCCTTCGGGAGATCCTGCATAGAAATATCTAGGACAATAGTTTCTATACTGTCTGTAACT +CTGATAATCTCTAAAGTCACTAACTGATACCATGAAATTGAGAAGATCAAACGCTGAAGTAATCAATTTT +TCTGCCTCGTTTTTACTACAACTAGTTTTCATCAATGTAGTGACGATGTATTGTTTAGTTACTCTTGGTC +TAATACTGATGATAGAGATATTATTGCTTCCCATAATGGATCTTCTAGTAGTCACCTTAAAGCCCATTGA +TGCGAATAGCAGATAGATAAAGTCTTGGTATGACTCCTTTCTAATATAGTACGGACTACCTTTGTCACCC +AACTTTATACCCACATAAGCCATAACAACCTCTTTAATAGCCGTTTCATGAGGTTTATCAGCCATGAGCC +TGAGTAGTTGAAAGAATCGCATGAATCCCGTCTCAGAAAGTCCTATATGCATGATAGATTTATCTTTCCT +GGGAAACTCTCGTATAGTTATAGATGAAATACTCTTCAAAGTTTCTGAAATAAGATTAGTAACAGTCTTA +CCTCCGACTACTCTGGGTAACAAACATACTCTAATAGGTGTTTTCTCTGCGGAGATAATATCAGAAAGGA +TAGAGCAATAAGTAGTATTATTGTGATTATAAAGACCGAATACATAACAGGTAGAATTTATAAACATCAT +GTCCTGAAGGGTTTTAGACTTGTATTCCTCGTAATCTATACCGTCCCAAAACATGGATTTGGTAACTTTG +ATAGCCGTAGATCTTTGTTCCTTCGCTAACAGGTTAAAGAAATTAATAAAGAATTTGTTGTTTCTATTTA +TGTCCACAAATTGCACGTTTGGAAGCGCCACGGTTACATTCACTGCAGCATTTTGAGGATCGCGAGTATG +AAGTACGATGTTATTGTTTACTGGTATATCTGGAAAGAAATCTACCAGTCTAGGAATAAGAGATTGATAT +CGCATAGAAATAGTAAAGTTTATAATCTCATCATTGAAGATTACTCTGTTACCATTGTAATAAATTGGTA +CTCTATCATAATCATCGACAAAGTACTGTTCATACATGATGAGATGTTTATATGTTGGCATAGTAGTGAG +ATCGACGTTTGGTAATGGCAATGTATTAAGATTAACTCCATAATGTCTAGCAGCATCTGCGATGTTATAA +GTGATGTCAAAGCGGGGTTGATCTTGTGCTGTTATATATTGTCTAACACCTATAAGATTATCAAAATCTT +GTCTGCTTAATACACCGTTAACAATTTTTGCCTTGAATTCTTTTATTGGTGCATTAATAACATCCTTATA +GAGGATGTTAAACAAATAAGTATTATCAAAGTTAAGATCTGGGTATTTCTTTTCTGCTAGAACATCCATT +GAGTCGGAGCCATCTGGTTTAATATAACCACCGATAAATCTAGCTCTGTATTCTGTATCCGTCAATCTAA +TATTAAGAAGGTGTTGAGTGAAAGGTGGAAGATCGTAAAAGCTGTGAGTATTAATAATAGGGTTAGTTTC +CGAACTAATGTTAATTGGATGATTAATAATATTTATATTTCCAGCGTTAAGTGTAACATTAAACAGTTTT +AATTCACGTGACGTGGTATCAATTAAATAATTAATGCCCAATTTGGATATAGTAGCCTGAAGCTCATCTT +GTTTAGTTACGGATCCTAATGAGTTATTAAGAAATACATCGAACGGATGAACGAAGGTTGTTTTAAGTTG +GTCACATACTTTGTAATCTAGACATAGATGTGGAAGAACGGTAGAAACTATACGAAATAGATATTCAGAG +TCCTCTAATTGATCAAGAGTAACTATTGACTTAATAGGCATCATTTATTTAGTATTAAATGACGACCGTA +CCAGTGACAGATATACAAAACGACTTAATTACAGAGTTTTCAGAAGATAATTATCCATCTAACAAAAATT +ATGAAATAACTCTTCGCCAAATGTCTATTCTAACTCACGTTAACAACGTGGTAGATAGAGAACATAATGC +CGCCGTAGTGTCATCTCCAGAGGAAATATCATCACAACTTAATGAAGATCTATTTCCAGATGATGATTCA +CCGGCCACTATTATCGAACGAGTACAACCTCATACTACTATTATTGACGATACGCCACCTCCTACTTTTC +GTAGAGAGTTATTGATATCGGAACAACGTCAACAACGAGAAAAAAGATTTAATATTACAGTATCAAAAAA +TTCTGAAGCAATAATGGAATCTAGATCTATGATAACTTCTATGCCAACACAAACACCATCCTTGGGAGTA +GTTTATGATAAAGATAAAAGAATTCAGATGCTAGAGGATGAAGTGGTTAATCTTAGAAATCAACGATCTA +ATACAAAATCATCTGATAATTTAGATAATTTTACCAGAATACTATTTGGTAAGACTCCGTATAAATCAAC +CGAAGTTAATAAGCGTATAGCCATCGTTAATTATGCAAATTTGAACGGGTCCCCCTTATCAGTCGAGGAC +TTGGATGTCTGTTCGGAGGATGAAATAGATAGAATCTATAAAACGATTAAACAATATCACGAAAGTAGAA +AACGAAAAATTATCGTCACTAACGTGATTATTATTGTCATAAACATTATTGAGCAGGCATTGCTAAAACT +CGGATTTGAAGAAATCAAAGGACTGAGTACCGATATCACTTCAGAAATTATCGATGTGGAGATCGGAGAT +GACTGCGATGCTGTAGCATCAAAACTAGGAATCGGTAACAGTCCGGTTCTTAATATTGTATTGTTTATAC +TCAAGATATTCGTTAAACGAATTAAAATTATTTAATTTAATACATTCCCATATCCAGACAACAATCGTCT +GGATTAATCTGTTCCTGTCGTCTCATACCGGACGACATATTAATCTTTTTATTAGTGGGCATCTTTTTAG +ATGGTTTCTTTTTCCCAGCATTAACTGATTCGATACCTAGAAGATCGTGATTGATTTCTCCGACCATTCC +ACGAACTTCTAATTGGCCGTCTCTAACGGTACCATAAACTATTTTACCAGCATTAGTAACAGCTTGGACA +ATCTGACCATCCATTGCGTTGAATGATGTAGTTGCTGTTGTTCTACGTCTAGGAGCACCAGAGGTATTTT +TAGAGCTCTTGGATGTTGATGTAGAAGACGAGGATTTTGATTTTGGTTTACATGTAATACATTTTGAACT +CTTTGATTTTGTATCACATGCACCGGCAGTCACATCTGTTTGAGAATTAAGATTATTGTTGCCTCCTTTG +ACGGCTGCATCTCCACCGATCTGCGCTAGTAGATTTTTAAGCTGTGGTGTAATCTTATTAACTGTTTCAA +TATAATCATCGTAACTACTTCTAACGGCTAAATTTTTTTTATCCGCCATTTAGAAGCTAAAAATATTTTT +ATTTATGCAGAAGATTTAACTAGATTATACAATGAACTAATATGATCCTTTTCTAGATTATTTACGAACT +TGGTATTTCTTGTTTCTGGAGGAGGAGAATTTAAATTCGGACTTGGATTCGGATTTTGTGGGTTCTTGAT +CTTATTATACAGCGTGTATAGGATGGTGACGGTAACTGCTACACAAATACCGATCAACAGAAGAATACCA +ATCATTTATTGACAATAACTTCACTATGATCAAGTATGTAATAATCATCTTTTCACTAAGTAAGTAGTAA +TAATGATTCAACAATGACACGATATATGGACGATAATAATTTAGTTCATGGAAATATCGCTATGATTGGT +GTGAATGACTCCGCTAACTCTGTGGGGTGCACAGTGCTTTCCCCACATAGAATAAATTAGCATTCCGACT +GTGATAATAATACCAAGTATAAACGCCATAATACTCAATACTTTCCATGTACGAGTGGGACTGGTAGACT +TACTAAAGTCAATAAAGGCGAAGATACACGAAAGAATCAAAAGAATGATTCCAGCGATTAGCACGCCAGA +AAAATAATTTCCAATCATAAGCATCATGTCCATTTAACTAATAAAAATTTTAAATCGCCGAATAAACAAA +GTGGAATATAAACCATATAAAAACAATAGTTTGTACTGCAAAAATAATATCTATTTTTGTTTTCGAAGAT +ATGGTAAAATTAAATAGTAGTACACAGCATGTTATAACTAACAGCAGCAACGGCTCGTAATTACTTATCA +TTTACTAGACGAAAAGGTGGTGGGATATTTTCTTGCTCAAATAATACGAATATATCACCCATCCATTTTA +TACGATGTTTATATACTCTAATCTTTAATAGATCTATAGATGACGGGTTTACCAATAATATAGATTTTAT +CGATTCATCTAATTTAAACCCTTCCTTAAACGTGAATGATCTATTATCTGGCATAATGATGACCCTACCT +GATGAATCTGACAATGTACTGGGCCATGTAGAATAAATTATCAACGAATTATCGTCTACGAACATTTATA +TCATTTGTTTTAATTTTAGGACGTGAATAAATAGATATAAAATAGAAAATAACAGATATTACAACCAGTG +TTATGGACGCACCCAACCATGTAGGCAGTTTTATTTTATCGTTTACTACAGGTTCTCCTGGATGTACGTC +ACCAACTGCAGACGTAGTTCTAGTACAATTAGACGTAAGTTCCGCTTGGGAATTTTTTAACGCTAAAGAG +TTAACGTTGATCGTACACCCAACGTATTTACATCTAGTTCTTTGAACATCTTGATTATAATATAACCATT +TTCTATCTCTAGATTCGTCAGTGCACTCATGTAACCAACATACCCTAGGTCCTAAATATTTATCTCCGGA +ATTAGATTTTGGATAATTCGCGCACCAACAATTTCTATTTCCTTTATGGTCGTTACAAAAGACGTATAAT +GCCGTATCCCCAAAAGTAAAATAATCAGGACGAATAATTCTAATAAACTCAGAACAATATCTCGCATCCA +TATGTTTGGAGCAAATATCGGAATAAGTAGACATAGCCGGTTTCCGTTTTACACGTAACCATTCTAAACA +ATTGGGGTTTCCAGGATCGTTTCTACAAAAACCAGTCATGAAATCGTCACAATGTTCTGTCTTGTAATTA +TTATTAAATATTTTTGGACAGTGTTTGGTATTTGTCTTAGAACAACATTTTGCCACGCTATCACTATCAC +CCAGGAGATAATCCTTTTTTATAAAATGACATCGTTGCCCGGATGCTATATAATCAGTAGCATATTTTAA +ATCCTTAATATATTCAGGAGTTACCTCGTTCTGATAATAGATTAATGATCCAGGACGAAATTTGAAAGAA +CTACATGGTTCTCCATGAATTAATACATATTGTTTAGCAAATTCAGGAACTATAAAACTACTACAATGAT +CTATCGACATACCATCTATCAAACAAAATTTGGGTTTAATTTCTCCTGGAGACGTTTCATAATAATACAT +ATAACTTTCTTCGGCAAACCTAACAGCTCTATTATATTCAGGATAATTAAAATCTAATACCATATATTTG +TCTCGTATATCTGCTATTCCTGTCTCTATTTTGATTCTATTAAGAGTAACAGCTGCCCCCATTCTTAATA +ATCATCAGTATTTAAACTGTTAAATGTTGGTATATCAACATCTATCTTATTTCCCGCAGTATAAGGTTTG +TTGCAGGTATACTGTTCAGGAATGGGTACATTTATACTTCTTTTATAGTCCTGTCTTTCGATGTTCATCA +CAAATGCAAAGAACAGAATAAACAAAATAATGTAAGAAATAATATTAAATATCTGTGAATTCGTAAATAC +ATTGATTGCCATAATAATTACAGCAGCTACAATACACACAATAGACATTCCCACAGTGTTGCCATTACCT +CCACGATACATTTGAGTTACTAAGCAATAGGTAATAACTAAGCTAGTAAGAGGCAATAGAAAAGATGAGA +TAAATATCATCAATATAGAGATTAGAGGAGGGCTATATAGAGCCAAGACGAACAAAATCAAACCGAGTAA +CGTTCTAACATCATTATTTTTGAAGATTCCCAAATAATCATTCATTATTCCTCCATAATCGTTTTGCATC +ATACCCCCATCTTTAGGCATAAACGATTGCTGCTGTTCCTCTGTAAATAAATCTTTATCAAGCACTCCAG +CACCCGCAGAGAAGTCATCAAGCATATTGTAATATCTTAAATAACTCATTTATATATTAAAAAATGTCAC +TATTAAAGATGGAGTATAATCTTTATGCCGAACTAAAAAAAATGACTTGTGGTCAGACCATAAGTCTTTT +TAATGAAGACGGCGATTTCGTAGAAGTTGAACCAGGATCATCCTTTAAGTTTCTAATACCTAAGGGATTT +TACTCCTCTCCTTGTGTAAAGACGAGTCTAGTATTCAAGACATTAACAACGACCGATAATAAAATTACTA +GTATCAATCCAACAAATGCGCCAAAGTTATATCCTCTTCAACGCAAAGTCGTATCTGAAGTAGTTTCTAA +TATGAGGAAAATGATCGAATTAAAACGTCCTCTATACATCACTCTTCACTTGGCATGTGGATTTGGTAAG +ACTATTACCACGTGTTATCTTATGACCACACACGGCAGAAAAACCATCATTTGCGTACCCAATAAAATGT +TAATACATCAATGGAAGACACAGGTAGAGGCAGTCGGATTGGAACATAAGATATCTATAGATGGAGTTAG +TAGTCTATTAAAGGAACTAAAGACTCAAAGTCCGGATGTATTAATCGTAGTCAGTAGACATCTGACAAAC +GATGCATTTTGTAAATATATCAATAAGCATTATGATTTGTTTATCTTGGATGAATCACATACGTATAATC +TGATGAACAATACAGCAGTTACAAGATTTTTAGCGTATTATCCTCCGATGATGTGTTATTTTTTAACTGC +TACACCTAGACCAGCTAACCAAATTTATTGTAATAGTATTATTAATATTGCCAAGTTATCCGATCTAAAA +AAAACTATCTATATAGTAGATAGTTTTTTTGAGCCATATTCCACAGACAATATTAGAAATATGGTAAAAC +GACTAGATGGACCATCTAATAAATATCATATATATACCGAGAAGTTATTATCTGTAGACGAGCCTAGAAA +CCAACTTATTCTTGATACCCTGGTAGAAGAATTCAAGTCAGGAACTATTAATAGAATTTTAGTTATTACT +AAACTACGTGAACATATGGTATTCTTCTACAAACGATTATTAGATCTTTTCGGAGCAGAGGTTGTATTTA +TAGGAGACGCCCAAAATAGACGTACTCCAGATATGGTCAAATCGATTAAGGAACTAAATAGATTTATATT +CGTATCCACCTTATTTTATTCCGGCACTGGTTTAGATATTCCGAGTTTGGATTCTTTGTTCATTTGCTCG +GCAGTAATCAACAATATGCAAATAGAGCAATTACTAGGGAGGGTATGTCGAGAAACAGAACTATTAGATA +GGACGGTATATGTATTTCCTAACACATCCATCAAAAAAATAAAGTACATGATAGGAAATTTCGTGCAACG +AATTATTAGTCTGTCTGTAGATAAACTCGGATTTAAACAAGAAAGTTATCAGAAACATCAGGAATCTGAA +CCCGCTTCCGTACCAACATCCTCCAGAGAAGAACGTGTATTAAATAGAATATTTAACTCGCAAAATCGTT +AAGAAGTTTAAGAGACGATCCACATGCTGAGCAGGCCAGTGTATTACCCCTCATAGTATTAATATAATCC +AATGATACTTTTGTGATGTCGGAAATCTTAACCAATTTAGACTGACAGGCAGAACACGTCATACAATCAT +CATCGTCATCGATAACTGTAGTCTTGGGCTTCTTTTTGCGACTCTTCATTCCGGAACGCATATTGGTGCT +ATCCATTTAGGTAGTAAAAAATAAGTCAGAATATGCCCTATAACACGATCGTGCAAAACCTGGTATATCG +TCTCTATCTTTATCACAATATAGTGTATCAACATCTTTATTATTGACCTCGTTTATCTTGGAACATGGAA +TGGGAACATTTTTGTTAACGGCCACCTTTGCCTTAATTCCAGATGTTGTAAAATTATAACTAAACAGTCT +ATCATCGACACAAATGAAATTCTTGTTTAGACGTTTGTAGTTTACGTATGCGGCTCGTTCTCGTCTCATT +TTTTCAGATATTGCAGGTACTATAATATTAAAAATAAGAATGAAATAACATAGGATTAAAAATAAAGTTA +TCATGACTTCTAGTGCTGATTTAACTAACTTAAAAGAATTACTTAGTCTGTACAAAAGTTTGAGATTTTC +AGATTCTGTGGCTATAGAGAAGTATAATTCTTTGGTAGAATGGGGAACATCTACTTACTGGAAAATAGGC +GTACAAAAGGTAACTAATGTCGAGACGTCCATATCTGATTATTATGATGAGGTAAAAAATAAACCGTTTA +ATATTGATCCGGGGTATTATATTTTCTTACCAGTATATTTTGGAAGCGTCTTTATTTATTCAAAGGGTAA +AAATATGGTAGAACTTGGATCTGGAAACTCTTTTCAAATACCGGATGAGATTCGAAGTGCGTGTAACAAA +GTATTAGATAGTGATAACGGAATAGACTTTCTGAGATTTGTTTTGTTAAACAATAGATGGATAATGGAAG +ACGCTATATCAAAATACCAGTCTCCAGTTAATATATTTAAACTAGCTAGTGAGTACGGATTAAACATACC +CAACTATTTAGAAATTGAAATAGAGGAAGACACATTATTTGACGATGAGTTATACTCTATTATGGAACGC +TCTTTCGATGATACATTTCCAAAAATATCTATATCGTATATTAAGTTGGGAGAACTTAAGCGGCAAGTTG +TAGACTTTTTCAAATTCTCATTCATGTATATTGAGTCAATCAAGGTAGATCGTATAGGAGATAATATTTT +TATTCCTAGCGTTATAACAAAATCAGGAAAAAAGATATTAGTAAAAGATGTAGACCATTTAATACGATCC +AAGGTTAGAGAACATACATTTGTAAAAGTAAAAAAGAAAAACACATTTTCCATTTTATACGACTATGATG +GGAACGGAACAGAAACTAGAGGAGAAGTAATAAAACGAATTATAGACACTATAGGACGAGACTATTATGT +TAATGGAAAGTATTTCTCTAAGGTTGGTATTGCAGGCTTAAAGCAATTGACTAATAAATTAGATATTAAT +GAGTGTGCAACTGTCGATGAGTTAGTTGATGAGATTAATAAATCCGGAACTGTAAAACGAAAAATAAAAA +ACCAATCAGTATTTGATTTAAGCAGAGAATGTTTGGGATATCCAGAAGCGGATTTTATAACGTTAGTTAA +TAACATGCGGTTCAAAATAGAAAATTGTAAGGTTGTAAATTTCAATATTGAAAATACTAATTGTTTAAAT +AACCCGAGTATTGAAACTATATATGGAAACTTCAACCAGTTCGTCTCAATCTTTAATACCGTTACCGATG +TCAAAAAAAGATTATTCGAGTGAAATAATATGCGCCTTTGATATAGGTGCAAAAAATCCTGCCAGAACTG +TTTTAGAAGTCAAGGATAACTCCGTTAGGGTATTGGATATATCAAAATTAGACTGGAGTTCTGATTGGGA +AAGGCGCATAGCTCAAGATTTGTCACAATATGAATACACTACAGTTCTTCTAGAACGTCAGCCTAGAAGG +TCACCGTACGTCAAATTTATCTATTTTATTAAAGGCTTTTTATATCATACATCTGCTGCCAAAGTTATTT +GCGTCTCACCTGTCATGTCTGGTAATTCATATAGAGATCGAAAAAAGAGATCTGTTGAAGCATTTCTTGA +TTGGATGGACACATTCGGATTGCGAGACTCCGTTCCGGATAGACGCAAATTAGACGATGTAGCGGATAGT +TTCAATTTGGCTATGAGATACGTATTAGATAAATGGAATACTAATTATACACCTTATAATAGGTGTAAAT +ATAGAAATTACATAAAAAAAATGTAATAACGTTAGTAACGCCATTATGGATAATCTATTTACCTTTCTAC +ATGAAATAGAAGATAGATATGCCAGAACTATTTTTAACTTTCATCTAATAAGTTGTGATGAAATAGGAGA +TATATATGGTCTTATGAAAGAACGCATTTCCTCAGAGGATATGTTTGACAATATAGTATATAATAAAGAT +ATACATCCTGCCATTAAGAAACTAGTTTATTGCGACATCCAACTTACTAAACATATTATTAATCAGAATA +CGTATCCGGTATTTAACGATTCTTCACAAGTGAAATGTTGTCATTATTTCGATATAAACTCAAATAATAG +CAATATTAGCTCTCGTACAGTAGAGATATTTGAGAGTGAAAAGTCATCTCTTGTATCATATATTAAAACT +ACCAATAAGAAGAGAAAGGTCAATTACGGCGAAATAAAGAAAACTGTACATGGAGGCACTAATGCAAATT +ACTTTTCCGGTAAAAAGTCTGATGAGTATCTGAGCACTACAGTCAGGTCCAACATTAATCAACCTTGGAT +CAAAACCATTTCTAAGAGAATGAGAGTAGATATCATTAATCACTCTATAGTAACGCGTGGAAAAAGCTCT +ATATTACAAACTATAGAAATTATTTTTACTAATAGAACATGTGTGAAAATATTCAAGGATTCTACTATGC +ACATTATTCTATCCAAGGACAAGGATGAAAAGGGATGTATAAACATGATTGATAAATTATTCTATGTATA +TTATAATTTATTTCTGTTGTTCGAGGATATCATCCAAAACGATTACTTTAAAGAAGTAGCTAATGTTGTA +AACCATGTACTCATGGCTACGGCATTAGATGAGAAATTATTCCTAATTAAGAAAATGGCTGAACACGATG +TTTATGGAGTTAGCAATTTCAAAATAGGGATGTTTAACCTGACATTTATTAAGTTGTTGGATCATACCGT +TTTCCCCTCTCTGTTAGATGAGGATAGCAAAATAAAGTTTTTTAAGGGGAAAAAGCTCAATATTGTAGCA +TTACGATCTCTGGAGGATTGTACAAATTACGTGACTAAATCCGAGAATATGATAGAAATGATGAAGGAAA +GATCGACTATTTTAAATAGCATAGATATAGAAACGGAATCGGTAGATCGTCTAAAAGAATTGCTTCTAAA +ATGAAAAAAAACACTGATTCAGAAATGGATCAACGACTCGGGTATAAGTTTTTGGTGCCTGATCCTAAAG +CCGGAGTTTTTTATAGACCGTTACATTTCCAATATGTATCGTATTCTAATTTTATATTGCATCGATTGCA +TGAAATCTTGACCGTCAAGCGGCCACTCTTATCGTTTAAGAATAATACAGAACGAATTATGATAGAAATT +AGCAATGTTAAAGTGACTCCTCCAGATTACTCACCTATAATTGCGAGTATTAAAGGTAAGAGTTATGACG +CATTAGCCACGTTCACTGTAAATATCTTTAAAGAGGTAATGACCAAAGAGGGTATATCCATCACTAAAAT +AAGTAGTTATGAGGGAAAAGATTCTCATTTGATAAAAATTCCGCTACTAATAGGATATGGGAATAAAAAT +CCACTTGATACAGCCAAGTATCTTGTTCCTAATGTCATAGGTGGAGTCTTTATCAATAAACAATCTGTCG +AAAAAGTAGGAATTAATCTAGTAGAAAAGATTACAACATGGCCAAAATTTAGGGTTGTTAAGCCAAACTC +ATTCACTTTCTCGTTTTCCTCCGTATCCCCTCCTAATGTATTACCGACAAGATATCGCCATTACAAGATA +TCTCTGGATATATCACAATTGGAAGCGTCGAATATATCATCGACAAAGACATTTATAACGGTCAATATTG +TTTTGCTGTCTCAATATTTATCTAGAGTGAGTCTAGAATTCATTAGACGTAGTTTATCATACGATATGCC +TCCAGAAGTTGTCTATCTAGTAAACGCGATAATAGATAGTGCTAAACGACTTACCGAATCTATTACTGAC +TTTAATATTGATACATACATTAATGACCTGGTGGAAGCTGAACACATTAAACAAAAATCTCAGTTAACGA +TTAACGAGTTTAAATATGAAATGCTGCATAACTTTTTACCTCATATGAACTATACACCCGATCAACTAAA +GGGATTTTATATGATATCTTTACTAAGAAAGTTTCTCTACTGTATCTACCACACTTCTAGATATCCAGAT +AGAGATTCGATGGTTTGTCATCGCATCCTAACGTACGGCAAATATTTTGAGACGTTAGCACATGATGAAT +TAGAGAATTACATAGGTAACATCCGAAACGATATCATGAACAATCACAAGAACAGAGGCACTTACGCAGT +AAACATTCATGTACTAACAACTCCTGGACTTAATCATGCATTTTCTAGTCTATTGAGTGGAAAGTTCAAA +AAGTCAGACGGTAGTTATCGAACACATCCTCACTATTCATGGATGCAGAATATTTCTATTCCTAGAAGTG +TTGGATTTTATCCGGATCAAGTAAAGATTTCAAAGATGTTTTCTGTCAGAAAATACCATCCAAGCCAATA +TCTTTACTTTTGTTCATCAGACGTTCCGGAAAGAGGTCCTCAGGTAGGTTTAGTATCTCAATTGTCTGTC +TTGAGTTCCATTACAAATATACTAACGTCTGAGTATTTGGATTTGGAAAAGAAAATTTGTGAGTATATCA +GATCATATTATAAAGATGATATAAGTTACTTTGAAACAGGATTTCCAATCACTATAGAAAATGCTCTAGT +CGCATCTCTTAATCCAAATATGATATGTGATTTTGTAACTGACTTTAGACGTAGAAAACGGATGGGATTC +TTCGGTAACTTGGAGGTAGGTATTACTTTAGTTAGGGATCACATGAATGAAATTCGCATTAATATTGGAG +CAGGAAGATTAGTCAGACCATTCTTGGTTGTGGATAACGGAGAGCTCATGATGGATGTGTGTCCGGAGTT +AGAAAGCAGATTAGACGACATGACATTCTCTGACATTCAGAAAGAGTTTCCACATGTCATCGAAATGGTA +GATATAGAACAATTTACTTTTAGTAACGTATGTGAATCGGTTCAAAAATTTAGAATGATGTCAAAGGATG +AAAGAAAGCAATACGATTTATGTGACTTTCCTGCCGAATTTAGAGATGGATATGTAGCATCTTCACTAGT +GGGAATCAATCACAATTCTGGACCCAGAGCTATTCTTGGATGTGCTCAAGCTAAACAAGCTATCTCTTGT +CTGAGTTCGGATATACGAAATAAAATAGACAATGGAATTCATTTGATGTATCCAGAGAGGCCAATTGTGA +TTAGTAAGGCTTTAGAAACTTCAAAGATTGCGGCTAATTGCTTCGGACAACATGTTACTATAGCATTAAT +GTCGTACAAAGGTATCAATCAAGAGGATGGAATTATCATCAAAAAACAATTTATTCAGAGAGGCGGTCTC +GATATTGTTACAGCCAAGAAACATCAAGTAGAAATTCCATTGGAAAACTTTAATAACAAAGAAAGAGATA +GGTCTAACGCCTATTCGAAATTAGAAAGTAATGGATTAGTTAGACTGAATGCTTTCTTGGAATCCGGAGA +CGCTATGGCAAGAAATATCTCATCAAGAACTCTTGAAGATGATTTTGCTAGAGATAATCAGATTAGCTTT +GATGTTTCCGAGAAATATACAGATATGTACAAATCTCGCGTTGAACGAGTACAAGTAGAACTTACTGACA +AAGTTAAGGTGCGAGTATTAACCATGAAAGAAAGAAGACCCATTCTAGGAGACAAATTTACTACTAGAAC +GAGTCAAAAGGGAACAGTCGCGTATATCGCAGATGAAACGGAACTTCCGTACGACGAAAATGGTATCACA +CCAGATGTCATTATTAATTCTACATCCATCTTCTCTAGAAAAACTATATCTATGTTGATAGAAGTTATTT +TAACAGCCGCATATTCTACTAAGCCGTACAACAATAAGGGAGAAAACCGACCTGTCTGTTTTCCTAGTAG +TAACGAAACATCTATCGATGCATATATGCAATTCGCTAAACAATGTTATGAGTATTCAAATCCGAAATTG +TCCGAGGAAGAATTATCGGATAAAATCTTTTGTGAAAAGATTCTCTATGATCCTGAAACGGATAAGCCTT +ATGAATCCAAAGTATTTTTTGGACCAATTTATTACTTGCGTCTGAGACATTTAACTCAGGACAAGGCAAC +CGTTAGATGTAGAGGTAAAAAGACGAAGCTCATTAGACAAGCGAATGAGGGACGAAAACGTGGAGGAGGT +ATCAAGTTTGGAGAAATGGAGAGAGACTGTTTAATAGCACATGGTGCAGCCAATACTATTACAGAAGTTT +TAAAAGACTCAGAAGAGGATTATCAAGATGTGTATATTTGTGAAAATTGTGGAGACATAGCAGCACAAAT +CAAAAGTATTAATACATGTCTTAGATGTTCAAAACTTAATCTCTCTCCTCTCTTAACAAAAATTGATACC +ACGCACGTATCTAAAGTATTTCTTACTCAAATGAACGCCAGAGGCGTAAAAGTTAAATTAGATTTCGAAC +GAAGGCCTCCTTCGTTTTATAAACCATTAGATAAAGTTGATCTTAAACCGTCTTTTCTGGTATAATATTG +TTTAGTAGATACTCATCAAGATAAGCTAATTCACTAAACATATTATCGGATTCGGTATTGTTACTCGAGA +ATAGAGTTCGTTATGCTCCTGATATTCGGAAATCTGTGGAGTTTCAGGTTTTGGTGGAAGTGTAACTGCT +ACTTGGTGGGATACTGAAGGATATTTCAGAGAGTTGTGGATGTTCGGGTTCGACATCCACCGATGGTGTC +ACGCCACTAATCGGTTCGGTAACGTCTGTGGATGGAGGTGCTACTTCTACAGAACCTGTAGCCTCAGTTG +TCAACGGAGATACATATTCAATGCGCGGAAATGTATAATTTGGTAATGGTTTCTCATGTGGATCTTAAGA +AGAAGAGGTAAGATATCTACGAAAGATACCGATCACGTTTCTAGTTCTCTTTTGTAGAACTTTAACTTTT +TCTTTCTCAGCATCTAGTTGATATTCCGACCTCTTCACGTTTCGCATGGGTTACCTCCGCAGTTTTTACA +AGCGATTTCACGTTCCAGATCACGTTCAGCCTTCATACGTCTCTCCCTCTCTCTATCGAGTTTATCAGAG +CAGTCTTTCTGAAGGCGATCGAACTCCATAAATTTCTCCAACGCTTTGATTGTTTCCATAGATTTCCGAA +GTTTAGCTTCTAGGACGGCGATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAATTCACGGGGTACAA +CCGTTTCCATTACCACCATCTCTATGTTTCTTTTCTAGATCGGCAATCTTTCTCAACATTTCATCCCCAT +ACCTTTTCATTCCTCGAGTCTATTGTCGTCGAAATATCGTTCCAGCTCCTTTTCGACCTCAATAACTTTA +GCACGTTGTTTCATCAAGCTCTCTCTTGTAGTACTATCATTTTTATCTGATTCCCTGACACGTTTAAGAT +CTTCATGTAATTGAGTCAGCTCTTGACGCAATCTCTTAACTAACTTCCTCTCTTGCTTCTTCGTCATAGT +ACTTACAATCACTATGGGATCCATTGTTACCACGTCTGTACTCGACGAGCTCACGTTTAAGAGATTCAAT +TTCCAGTTTGTATCGGTCCATGTCTCCATTGCTACACCACCATTAGATTTACAGGCTGCTAGTTGTCGTT +CGAGATCAGAAATACGTGTTTTCTTGGAATGGATTTCGTCGATGTACTTGTCATGATTGGCATCGAAACA +CTTATTAAGTTCTTTTTTTCAATTCTACGATTTTATTTCTTTCGCGAGTCAATTCCCTCCTGTAGTAACT +ATCAGTTTTGTCAGATTCACGCTCTCTACGTAGACTTTCTTGTAAGTTACTAATTTGTTCCCTGGCATTA +CCGAGTTCAGTTTTATATGCCGAATAGAGTTCTGATTCATCCTTTGAGAAGATCTCTAGCGATCGTTCAA +GATCCCTGATTCTAGTCTTTAGCCTATTTACCTCCTCAGAAGATGCTCCGTTACCGTTTTTACAATCGTT +AAGATGTCTATCAAGATCCATGATTCTATCTCTTTTCCATATCAGCATTGATTTCATTATTACGTTCGCA +GTCGTTCAACTGTATTTCAAGATCTGAGATTCTAGATTGTAATCTCTGTAGCATTTCCACGGCATTCACT +CAGTTGTCTTTCAAGATCTGAGATTCTAGATTGGAGTCTGCTAATCTCTGTAAGATTTCCTCCTCCGCTC +TCGATGCAGTCGGTCAACTTATTCTCTAGTTCTCTAATACGCGAACGCAGTGCATCAACTTCTTGTGTGT +CTTCTTGATTGCGTGTGCATTCATCGAGTCTAGATTCGAGATCTCTAACGTGACGTCGTTCTTCCTCAAG +TTCTCTGTGTACTACAGAAAGCGTGTCCCTATCTTGTTGATATTTAGCAATTTCTGATTCTAGAGTACTG +ATTCTACTCACGTATGTACTAATAGTTGTCTTAGCCTTATCAAGATCCTCCTTGTATTTGTCACATTCCT +TGATATCCATACGAAGTCTGGACAGTTCCCATTCGACATTACGACGTTTATCGATTTCAGCTCGGAGATC +GTCGTCGCGTTGTTTTAGCCACATACGACTAAGTTCAAGTTCTCGTTGACAAGATCCATCTACTTTTCCA +TCCCTAATAGTATCCAGTTCCTTTTCTAGTTCTGACCGCATTTCTCGTTCCATATCAAGAGATTCTCTCA +ATTCTCGTATAGTCTTCTTATCAATTTCTGATGAATCTGAACCATCATCTGTCCCATTTTGTTGCATATC +CCTGAGTTCTTTGATCTCTGTTGTAAGTCTGTCGATTCTTTCGGTTTTATAAACAGAATCCCTTTCCAAA +GTCCTAATCTTACTGAGTTTATCATTAAGTTCTTCATTCAATTCAGTGAGTTTTCTCTTGGCTTCTTCCA +AGTCTGTTTTAAACTCTCCATCATTTCCGCATTCTTCCTCGCATTTATCTAACCATTCAATTAGTTTATT +AATAACTAGTTGGTAATCAGCGATTCCTATAGCCGTTCTTGTATTTGTGGGAACATAATTAGGATCTTCT +AATGGATTGTATGGCTTGATAGCATCATCTTTATCATTATTAGGTGGGGGATGGACAACCTTAATTGGTT +GGTCCTCCTTATCTCCTCCAGTAGCATGTGGTTCTTCAATACCAGTATTAGTAATAGGCTTAGACAAATG +CTTGTCGTACGCGGGCACTTCCTCATCCATCAAGTATTTATAATCGGGTTCTGTTTCAGAATATTCTTTT +CTAAGAGACGCGACTTCAGGAGTTAGTAGAAGAACTCTGTTTCTGTATCTATCAACGCTGGAATCGATAC +TCAAGTTAAGGATAGCGAATACCTCATCGTCATCATCCGTATCTTCTGAAACGCCATCATATGACATTTC +ATGAAGTCTAACGTATTGATAAACAGAATCAGATTTAGTATTAAACAGATCCTTGACCTTTTTAGTAAAT +GCATATGTATATTTTAGATCTCCAGATTTCATAATATGATCGCATGCCTTAAATGTCAATGCTTCCATGA +TATAGTCTGGAACACTAATGGGTGACGAAAAAGATACAGCACCATATGCTACGTTGATAAATAGATCTGA +ACCACTAAGTAGATAATGATTAATGTTAAGGAAGAGGAAATATTCAGTATATAGATATGCCTTAGCATCA +TATCTTGTACTAAACACGCTAAACAGTTTATTGATGTGATCAATTTCCAACAGAACAATTAGAGCGGCAG +GAATACCAACAAACATATTACCACATCCGTATTTTCTATGAATATCACATATCATATTAAAAAATCTTGA +TAGAAGAGCGAATATCTCGTCTGACTTAATGAGATGTAGTTCAGCAGCATAAGTCATAACTGTAAATAGA +ACATACTTTCCTGTAGTGTTGATTCTAGACTCCACATCAACACCATTATTAAAAATAGTTTTATATACAT +CTTTAATCTGCTCTCCGTTAATCGTCGAACGTTCTAGTATACGGAAACACTTTGATTTCTTATCTGTAGT +TAATGACTTAGTGATATCACGAAGAATATTACGAATTACATTTCTTGTTTTTCTTGAGAGACCTGATTCA +GAACTCAACTCATCGTTCCATAGTTTTTCTACCTCAGTGGCGAAATCTTTGGAGTGTTTGGTACATTTTT +TAATAAGGTTCGTGACCTCCATTTATTATAAAAAATTTTTATTCAAAACTTAACTACAATCGGGTAATTA +TAAGATCGTAGATCTCCCATGTGGTGGAATACTACCATCTATCGCATGTTGATGGACAGTAGGTAATGGC +CATGGGAACAGTAATGTTTGCATATTTATCTTTCTTGCTAGTATTACTGTATATTGTCCCAATGTTTCAA +TGTGATGTTCTAACCTATCAACTGCCACTGTATCACAACAATAATGTCCGATGGAATTAAGATTATGATC +CAATGTGTTTAATATATGATTATCAAGTCTTATACGATCCGCGTCTTTTTTGACAGGATCAGGCTCTTCT +ACAGGAAGAAGTTTCGGCCTCTTATGATAGTCATGTCTGGGAAATGGTGGTCTAGGATGAGGATCAGGTA +TCGGAGTAGGTTTTGGATTATAATCATCATCATCATCATCATCATCATCATCATCATCATCATCTATGAT +ATCATCATCTTCGATATTTATTTTGCTATCTTGATAATGTCCTATATCAGTTGCATTTTCAGCACTCGAC +TGAATATTAGTACATTCATTGTCTATTATTAACGTATTTCTAAACCCAAAATGTATATGTTGAACATCAC +TACTATAGTTGATGAGTCTTATAGCATGAATTCGCTTATCGTTATCGGGTTTATCTTCTGTCACCTTAAC +AATTCCTTTTTTATTAAACTCTGCATAATCATAACCATTTCTATTGTTTGTTCTAATATAAACGAGTATA +GCATCATTGCTAAATTTTTCAATAGTATCAAAAACAGAATATCCTAAACCATATAATATATATTCAGGAA +CACTCAAACTAAATGTCCAGGATTCTCCTAAATACGTAAACTTTAATAGTGCTAAATCATTCAAAAATCT +ACCGCTTATAGATAGATAGTACATGAATGCGTATAGTAGTCTACCTATCTCTTTATTATGAAAACCGACA +TTACGATCATATATTTCGTGATATACATGTGACCCGTTTACGTTAAACCATAAATACATGGGTGATCCTA +TAAACATGAATTTATTTCTAATTCTCAGAGCCATAGTTAATTGACCGTGTAATATTTGTTTACATGCATA +CTTGATACGATCATTAATAAGATTTTTATCATTGCTCGTTATTTCAGAATCGTATATATAAGGAGTACCA +TCATGATTCTTACCAGATATTATACAAAATACTATATATAAAATATATTGACCCACGTTAGTAATCATGT +AAATGTTTAATGTTTTAAATTTTGTATTTAATGATCCATCATCATATGCTAGCATGGTCTTGTGATATTC +ATTCTTTAAAATATAATATTGTGTTAGCCATTGCATTGGAGCTCCTAATGGAGATTTTCTATTCTCGTCC +ATTTTAGGATATGCTTTCATAAAGTCCCTAATAACTTCGTGAATAATGTTTCTATGTTTTCTACTGATGC +ATGTATTTGCTTCGATTTTTTTATCCCATGTTTCATCTATCATAGATTTAAACGCAGTAATGCTCGCAAC +ATTAACATCTTGAACCATTGGTACAATTCCGTTCCATAAATTTATAATGTTCGCCATTTATATAACTCAT +TTTTTGAATATACTTTTAATTGAACAAAAGAGTTAAGTTACTCATATGGATGCCGTCCAGTCTGTACATC +AATCTTTTTAGCCAGAGATATCATAGCCGCTCTTAGAGTTTCAGCGTGATTTTCCAACCTAAATAGAACT +TCATCGTTGCGTTTACAACACTTTTCTATTTGTTCAAACTTTGTTGTTATATTAGTAATCTTTTTTTCCA +AATTAGTTAGCCGTTGTTTGAGAGTTTCCTCATTATCGTCTCCATAGGCTTTAACAATTGCTTCGCGTTT +AGTCTCTGGATTTTTAGCAGCCTTTGTAGAGAAAAATTCAGTTGCTGGAATTGCAAGATCGTCATCTCCG +GGGAAAAGAGTTCCGTCCATTTAAAGTACAGATTTTAGAAACTGACACTCTGTGTTATTTATATTTGGCG +CAATACATGGATTATAAATATCGATGTTAATAACATCAGAAAATGTAAAGTCTATACATTGTCGCATCGT +GTTAAATTTTCTAATGGATCTAGTATTATTGGGTCCAACTTCTGCCTGAAATCCAAATATGGAAGCGGAT +ACAAAACCGTTTCCTGGATAAACCACACATCTCCACTTTTGCTTTACATCAGAAATTGTGTCATTGACAT +CTTGAACTCTCCTATCTAATGCCGGTGTTCCACCTATAGATTTTGAATACTCGAATGCTGCATGAGTAGC +ATTGAATTCCTTAATATTGCCATAATTTTCATATATTGAGTAACTCTGGATAAAAAGTAAACACACCGCA +GCCGTCGCTACTACAATAAAAAAAATTGATAGAGAGTTCATTTATAATCTATTAGAAGCTGATAAAATTT +TTTTACACGCGTCAGACAATGCTTTAATAAATAGTTCAACATCTACTTTTGTCATATCGAACCGATGGTA +TGATTCTAACCTAGAATTACATCCGAAAAAGTTGACTATGTTCATAGTCATTAAGTCATTAACGAACAAC +ATTCCAGACTCTGGATTATAAGACGATACTGTTTCGTCACAATCACCCACCTTAATCATGTGATTATGAA +TATTGGCTATTAGAGTACCTTCTAAGAAATCTATAATATCTTTGAAACACGATTTAAAATCAAACCACGA +ATATACTTCTACGAAGAAAGTTAGTTTACCCATAGGAGAGATAACTATAAATGGAGATCTAGATACAAAA +TCCGGATCTATGATAGTTTTAACATTATTATATTCTCTATTAAATACCTCCACATCTAAAAATGTTAATT +TTGAAACTATGTCTTCGTTTATTACCGTACCTGAACTAAACGCTATAAGCTCTATTGTTTGAGAACTCTT +TAAACGATATTCTTGAAATACATGTAACAAAGTTTCCTTTAACTCGGTCGGTTTATCTACCATAGTTACA +GAATTTGTATCCTTATCTATAATATAATAATCAAAATCGTATAAAGTTATATAATTATCGTGTTCAGATT +GTGATCTTTTCAAATAGACTAAAAACCCCATTTCTCTAGTAAGTATCTTATGTATATGTTTGTAAAATAT +CTTCATGGTGGGAATATGCTCTACAGCAGTTAGCCATTCCTCATTGACAGCTGTAGATGTATTATACAAA +ACTACTCCAATGTTTAACAAGGGCCATTTTACGAGATTATTAAATCCTTGTTTGATAAATGTAGCCAATG +CGGGTTCGAGTTCAACGACGATTGAATTCTCTTCCCGTGGATGCTGCATGATGAACGACGGGATGTTGTT +GTTCTATTGATTTGGAATTCTTTTTCGACTTTTTGTTTATATTAAATATTTTAAAATTTATGGCTGATAG +TAATTCATGTACTACGGATAATGTAGACGTGTATTGCATATCGATATCTTTATTATTAGATAAATTTATC +AATAAATGTGAGAAGTTTGCCTCGTTAAGGTCTTCCATTTAAATATTATATAAATATTTGTGTTTGTATT +TTATTCGTCTTTTATGGGATAGTTTTTAACTAGTAAAGCTGTAATTACATACTTTGTCCGTAAAACATAA +ATATAAATACCCGCTTTTATCAAACGTTCCAAAAAGTCGGCAGCTGACATTTTTAACATGACATCTATTT +TAAATACACTTAGGTTTTTAGAAAAAACATCATTTTATAATTGTAACGATTCAATAACTAAAGAAAAGAT +TAAGATTAAACATAAGGGAATGTTATTTGTATTTTATAAGCCAAAGCATTCTACCGTTGTTAAATACTTG +TCTGGAGGAGGTATATATCATGATGATTTGGTTGTATTGGGGAAGGTAACAATTAATGATCTAAAGATGA +TGCTATTTTACATGGATTTATCATATCATGGAGTGACAAGTAGTGGAGCAATTTACAAATTGGGATCGTC +TATCGATAGACTTTCTCTAAATAGGACTATTGTTACAAAAGTTAATAACAATTATAACAATTATAACAAT +TATAACAATTATAATTGTTATAATAATTATAATTGTTATAATTATGATGATACATTTTTTGACGATGATG +ATTGATCACTATTACACAATTTTGTTTTTGTACTTTCTAATATAGTGTTTAGGTTCTTTTTCATATGAGA +ATATTGACTTACTAAAATATCTATGTTTAACTTTTGTTCTATAACGTCCTTATCGGCGGTATCGGTACAT +ATACGTAATTCACCTTCACAAAATACGGAGTCTTCGATAATAATAGCCAATCGATTATTGGATCTAGCTG +TCTGTATCATATTCAACATGTTTAATATATCCTTTCGTTTCCCCTTTACAGGCATCGATCGTAGCATATT +TTCCGCGTCTGAGATGGAAATGTTAAAACTGCAAAAATGCGTAATGTTAGCCCGTCCTAATATTGGTACG +TGTCTATAAGTTTGGCATAGTAGAATAATAGACGTGTTTAAATGCCTTCCAAAGTTTAAGAATTCTATTA +GAGTATTACATTTTGATAGTTTATCACCTACATCATCAAAAATAAGTAAAAAGTGTGCTGATTTTTTATG +ATTTTGTGCGACAGCAATACATTTTTCTATGTTACTTTTAGTTCGTATCAGATTATATTCTAGAGCTTCC +TGACTACTAACGAAATTAATATGATTTGGCCAAATGTATCCATCATAATCTGGGTTATAAACGGGTGTAA +ACAAGAATATATGTTTATATTTTTTAACTAGTGTAGAAAACAGAGATAGTAAATAGATAGTTTTTCCAGA +TCCAGATCCTCCTGTTAAAACCATTCTAAACGGCATTTTTAATAAATTTTCTCTTGAAAATTGTTTTTCT +TGAAAACAATTCATAATTATATTTACAGTTACTAAATTAATTTGATAATAAATCAAAATATGGAAAACTA +AGGTCGTTAGTAGGGAGGAGAACAACGAAGGCATATCGTGATATAAATAACATTTATTATCATGATGACA +CCAGAAAACGACGAAGAGCAGACATCTGTGTTCTCCGCTACTGTTTACGGAGACAAAATTCAGGGAAAGA +ATAAACGCAAACGCGTGATTGGTCTATGTATTAGAATATCTATGGTTATTTCACTACTATCTATGATTAC +CATGTCCGCGTTTCTCATAGTGCGCCTAAATCAATGCATGTCTGCTAACAAGGCTGCTATTACTGACTCC +GCTGTTGCCGTTGCTGCGGCATCATCTACTCATAGAAAGGTTGTGTCTAGCACTACACAATATGATCACA +AAGAAAGCTGTAATGGTTTATATTACCAGGGTTCTTGTTATATATTACATTCAGACTATAAGTCATTCGA +GGATGCTAAAGCAAACTGCGCTGCGGAATCATCAACACTACCCAATAAATCCGATGTCTTGACTACCTGG +CTCATTGATTATGTTGAGGATACATGGGGATCTGATGGTAATCCAATTACAAAAACTACATCCGATTATC +AAGATTCTGATGTATCACAAGAAGTTAGAAAGTATTTTTGTACATAAATAAATGAAATCGCTTAATAGAC +AAACTGTAAGTAGGTTTAGGAAGTTGTCGGTGCCGGCCGCTATAATGATGTTACTCTCAACCATTATTAG +CGGCATAGGAACATTTCTGCATTACAGAGAAGAACTGATGCCTAGTGCTTGCGCCAATGGATGGATACAA +TACGATAAACATTGTTATCTGGATACCAACATTAAAATGTCTACGGATAATGCAGTTTATCAGTGTCGCA +AATTACGAGCTAGATTGCCTAGACCTGATACTAGACATCTGAGAGTATTGTTTAGTATTTTTTATAAAGA +TTATTGGGTAAGTTTAAAAAAGACCAATGATAAATGGTTAGATATTAATAATGATAAAGATATAGATATT +AGTAAATTAACAAATTTTAAGCAACTAAACAGCACGACGGATTCTGAGGCGTGTTATATATACAAGTCTG +GAAAACTGGTTAAAACAGTATGTAAAAGTACTCAATCTGTACTATGCGTTAAAAGATTCTACAAGTGACA +ACAAAAAATGAATTAATAGTAAGTCGTTAACGTACGCCGCCATGGACGCCGCGTTTGTTATTACTCCAAT +GGGTGTGTTGACTATAACAGATACATTGTATGATGATCTCGATATCTCAATCATGGACTTTATAGGACCA +TACATTATAGGTAACATAAAAATTGTCCAAATAGATGTACGGGATATAAAATATTCCGACATGCAAAAAT +GCTACTTTAGCTATAAGGGTAAAATAGTTCCTCAGGATTCTAATGATTTGGCTAGATTCAACATTTATAG +TATTTGTACAGCATACAGATCAAAAAATACCATCATCATAGCATGCGACTATGATATCATGTTAGATATA +GAAGGTAAACATCAACCATTTTATCTATTCCCATCTATTGATGTTTTTAACGCTACAATCATAGAAGCGT +ATAATCTGTATACAGCTGGAGATTATCATCTGATCATCAATCCTTCAGATAATCTGAAAATGAAATTGTC +GTTTAATTCTTCATTTTGTATATCAGACGGCAATGGATGGATTATAATTGATGGGAAATGTAATAGTAAT +TTTTTATCATAAAAGTTGTAAAGTAAATAATAAAACAATAAATATTGAACTAGTAGTATGTTGTATATTG +AGCAATCAGAGATGATGCTGGTACCTCTTATCACGGTGACCGTAGTTGCGGGAACAATATTAGTATGTTA +TATATTATATATTTGTAGGAAAAAGATACGTACTGTCTATAATGACAATAAAATTATCATGACAAAATTA +AAAAAGATAAAGAGTCCTAATTCCAGCAAATCTAGTAAATCAACTGATAGCGAATCAGACTGGGAGGATC +ACTGTAGTGCTATGGAACAAAACAATGACGTAGATAATATTTCTAGAAATGAGATATTGAACGATGATAG +CTTCGCTGGTAGTTTAATATGGGATAACGAATCCAATATCATGGCGCCTAGCACAGAACACATTTACGAT +AGTGTTGCTGGAAGCACGCTGCTAATAAATAATGATCGTAATGAACAGACTATTTATCAGAATACTACAG +TAGTAATTAATGATACAGAGACTGTTGAAATACTTAATGAAGATACCAAACAGATTCCTAGCTATTCTTC +CAATCCTTTCGTAAATTATAATAAAACCAGTATTTGTAGCAAGTCAAATCCGTTCATTGCAGAACTCAAC +AATAAATTTAGTGATAATAATCCGTTTAGGAGAGCACATAGTGACGATTATCTTAATAAGCAACAAGATC +ATGAATACGATGATATAGAATCATCGGTTGTATCATTGGTCTGATTAGTTTCCTTTTTATAAAATTGAAG +TAATATTTAGTATTAATTACCGCCGATGCATTATACAAATATGGAGATATTCCCTGTATTCGGCATTTCT +AAAATTAGCAATTTTATTGCTAATAATGACTGTAGATATTATATAGATGTAGAGCATCAAAAAATTATAT +CTGATGAGATCAATAGACAGATGGATGAAACGGTACTTCTTACCAACATCTTAAGCGTAGAAGTTGTAAA +TGACAATGAGATGTACCATCTTATTCCCCATAGACTATCGACTATTATACTCTGTATTAGTTCTGTTGGA +GGATGTGTTATCTCTATAGATAATGACGTCAATGACAAAAATATTCTAACATTTCCCATTGATCATGCTG +TAATCATATCCCCACTGAGTAAATGTGTCGTAGTTAGCAAGGGCCCTACAACCATACTGGTTGTTAAAGC +GGATATACCCAGCAAACGATTGGTAACATCGTTTACAAACGACATACTGTATGTAAACAATCTATCACTG +ATTAATTATTTACCGTCGTCTGTATTCATTATTAGACGAGTCACCGACTATTTGGATAGACACATATGTG +ATCAGATATTTGCTAATAATAAGTGGTATTCCATTATAACTATCGACGATAAGCAATATCCTATTCCATC +AAATTGTATAGGTATGTCTTCTGCCAAGTACATAAATTCGAGCATCGAGCAAGATATTTTGATCCATGTT +TGTAACCTCGAGCATCCATTCGACTCAGTCTACAAAAAAATGCAGTCGTACAATTCTCTACCTATCAAGG +AACAAATATTGTATGGTAGAATTGATAATATAAATATGAGCATTAGTATTTCGGTGGATTAATAGATTTC +TCTAGTATGGGATCATTAATCATCTCTAAATACATCATAAAAAAGCTATTATCAAATACTGTACTGAATG +GATTCATTCTTTTCTCTTTTTATGAAACTCTGTTGTATATCTACGGATAAAACTAGAAGCAAAAAATCTG +ATAGGAAGAATAATGATTATATGGAGGAACACGATTATTATAAAATAACAATAGTTCCTGGTTCCTCTTC +CACGTCTACTAGCTCGTGGTATTATACACATGCCTAGTAATAGTCTCTTTGCGTTGACGGAAAGCAGACT +AGAAATAACAGGCCAAAATGTTCAGACACCATAATAGTTCCCAACCCAGATAATAACAGAGTTCCATCAA +CACATTCCTTTAAACTCAATCCCAAACCCAAAACCGTTAAAATGTATCCAGCCAATTGATAGTAGATAAT +GAGGTGTACAGCACATGATAATTTACACAGTAACCAAAATGAAAACACTTTAGTAATTATAAGAAATATA +GACGGTAATGTCATCATCAACAATCCAATAATATGCCTGAGAGTAAACATTGACGGATAAAACAAAAATG +CCCCGCATAACTCTATCATGGCAATAACGCAACCAAACACTTGTAAAATTCCTAAATTAGTAGAAAATAC +AACTGATATCGATGTATAAGCGATTTCGAGGAATAATAAGAACAAAGTAATTCCCGTAAAGATAAACATC +AACATTGTTTGGTAATCATTAAACCAATTAGTATGACGTTGAATTAATTTCACAGTATATTTTATTCCAG +TATTATCCCCGCATGTATACGTACCTGGTAAGATATCTTTATATTCCATAATCAATGAGACATCACTATC +CGATAACGAATGAAGTCTAGCACTAGTATGCCATTTACTTAATATGGTCGTCTTGGAAGTTTTATTATAA +GTTAAAATATCATGATTGTCCAATTTCCATCTAATATACTTTGTCGGATTATCTATAATACACGGAATAA +TGATGGTATCATTACATGCTGTATATTCTATAGTCTTTGTAGATGTTATAACCACAAAAGTACAGAGGTA +TATCAACAATATTCTAACTCTTAACATTTTTATTTATTTAAAATGATACCTTTGTTATTTATTTTATTCT +TATTTTGCTAACGGTATCGAATGGCATAAGTTTGAAACGAGTGAAGAAATAATTTCTACTTACTTAATAG +ATTATGTGGTAACGGGTGTTATTAATGGGGATGTATATACATTTTCAAATAATGAACTAAACAAAACTGG +GTTAACTAATAACAATAATTATATCACAACATCTATAAAAGTAGAGGATAAGGATACATTAGTAGTATGC +GGAACCAATAACGGAAATCCCAAATGTTGGAAAATAGACGGTTCATACTACCCAAAACATATAGGTAGAG +GATACGATCATCAAAATAGCAAAGTAACGATAATCAGTCACAATGAATGTGTACTATCCGACATAAACAT +ATAAAAAGAAGGAATTAAACGATGGAGAAGATTTGACGGACCATGTGGTTATGATTAAACGAGTTAAGTT +TTTTAAGAAGCCTTAGAAGAGAGGCTATTGGGTATGAGAATCCGAAATATTAAACCAGACAACCCCATAT +AATTTTATAGCTAAGAATGCCGCGAAGAATGGAACTAATAAAAACGGAAATATTTGTAGCACAACGAATA +ACTCCCAAACTGCATTCATGTTACACTATATAACACTACTTCGGTTAGATGTTTTAGAAAAAATAAATAT +CACCGTACCGTTTTGTTGTATAAAAATAACAATTAACAATTATCAATTTTTTTCTTTAATATTTTACGTG +GTTGACCATTCTTGGTGGTAAAATAATCTCTTAGTGTTGGAATGGAATGCTGTTTAATGTTTCCACACTC +ATCGTATATTTTGACGTATGCAGTCACATCGTTTACGCAATAGTCAGACTGTAGTTCTATCATGCTTCCT +ACGTTAGAAGGAGGAACAGTTTTAAAGTCTCTTGGTTTTAATCTATTGTCATTAGTTTTCATGAAATCCT +TTGTTTTATCCACTTCACATTTTAAATAAATGTCCACTATACATTCTTCTGTTAATTTTACTAGATCATC +ATGAGTCATAGAATTCATAGGTTCCGTAGTCCATGGATCCAAACTAGCAAACTTCGCGTATACGGTATCG +CGATTAGTGTATACACCAACTGTATGAAAATTAAGAAAACAGTTTAATAAATCTACAGAAATATTTAATC +CTCCGTTTGATACAGATGCGCCATATTTATGGATTTCGGATTCACACGTTGTTTGTCTAAGGGGTTCGTC +TAGTGTTGCTTCTACATAGACTTCGATTCCCATATATTCTTTATTGCCAGAATCACATACCGATTTATCA +TACGCTGGTTCACTTGTTTGAAAACTAAATGGTAGTAGATACATCAAAATAATAAATAATAAGTACATTC +TGCAATATTGTTATCGTAATTGGAAAATTGGTATTCAAGTGAGCTGGATTATGTGAGTATTGGATTGTAT +ATTTTATTTTATATTTTATATTTTATATTTTATTTTATATTTTATATTTTATTTTATATTTTGTAGTAAG +AATAGAATGCTAATGTCAAGTTTATTCGAATAGATGTCTTATTAAAAAACATATATAATAAATAACAATG +GCTGAATGGCATAAAATTATCGAGGATATCTCAAAAAATAATAAGTTCGAGGATGCCGCCATCGTTGATT +ACAAGACTACAAAGAATGTTCTAGCGGCTATTCCTAACAGAACATTTGCAAAGATTAATCCGGGTGAAGT +TATTCCCCTCATCACTAATCATAATATTCTAAAACCTCTTATTGGTCAGAAATTTTGTATTGTATATACT +AACTCTCTAATGGATGAGAACACGTATGCTATGGAGTTGCTTACTGGGTACGCCCCTGTATCTCCGATCG +TTATAGCGAGAACTCATACCGCACTTATATTTTTGATGGGTAAGCCAACAACATCCAGACGTGATGTGTA +TAGAACATGTAGAGATCACGCTACCCGTGTACGTGCAACTGGTAATTAAAATAAAAAGTAATATTCATAT +GTAGTGTCAATTTTAAATGATGATGAAATGGATAATATCCATATTGACGATGTCAATAATGCCGGTATTG +ACATACAGCTCATCGATTTTTAGATTTCATTCAGAGGATATTGAATTATGTTATGGGAATTTGTATTTTG +ATAGGATCTATAATAATGTAGTAAATATAAAATATATTCCTGAGCATATTCCATATAGATATAATTTTAT +TAATCGTACGTTCTCCGTAGATGAACTAGATGATAATGTCTTTTTTACACATGGTTATTTTTTAAAACAC +AAATATGGTTGTTCACTTAATCCTAGTTTGATTGTCTCATTATCAGGAAACTTAAAATATAATGATATAC +AATGCTCAGTAAATGTATCGTGTCTCATTAAAAATTTGGCAACGAGTACATCTACTATATTAACATCTAA +ACATAAGACTTATTCTCTATATCGGTCCATGTGTATTGCTATAATAGGATACGATTCTATTATATGGTAT +AAATATATAAATGACAGGTATAATGACATCTATGATTTTACTGCAATATGTATGCTAATAGCGTCTACAT +TGATAGTGATCATATACGTGTTTAAAAAAATAAAAATGAACTCTTAATTATGTTATACTATTAGAAATGG +ATAAAATCAAAATTACGATTGATTCAAAAATTGGTAATGTTGTTACCATATCGTATAACTTGGAAAAGAT +AACTATTGATGTCACGCCAAAAAAGAAAAAAGAAAAGGATGTATTATTAGCGCAATCAGTTGCTGTCGAA +GAGGCAAAAGATGTCAAGGTGGAAGAAAAAAATATTATCGATATTGAAGATGACGATGATATGGATATAG +AAAACACGTAATACGATCTATAAAAATAAGTATTAAATACTTTTTATTTACGGTACTCTTGTAGTGGTGA +TACCACTAATCGATTATTTTTTTTAAAAAAATACTTATTCTGATTCTTCTAGCCATTTCCGTGTTCGTTC +GAATGCCACATCGACGTCAAAAATAGGGGAGTAGTTGAAATCTAGTTCTGCATTGTTGGTACGCACCTCA +AATGTAGTGTTGGATATCTTCAACGTATAGTTGTTGAGTATTGATGGTTTTCTAAATAGAATTCTCTTCA +TATCATTCTTGCACGCGTACATTTTTAGCATCCATCTTGGAATCCTAGATCCTTGTTCTATTCCCAATGG +TTTCATCAATAGAAGATTAAACATATCGTAAGAACACGATGGAGAGTAATCGTAGCAAAAGTAAGCATTT +CCTTTAATCGCAGATCCCGGATACTGGATATATTTTGCAGCCAACACGTGCATCCATGCAACATTTCCTA +CATATACCCGGCTATGCACAGCGTCATCATCGACTGTACGATACATAATGTTACCGTGTTGCTTACATTG +CTCGTAAAAGACTTTCGTCAATTTGTCTCCTTCTCCGTAAATTCCAGTGGGTCTTAGGCAACAAGTATAC +AATTTTGCGCCATTCATGATTACGGAATTATTGGCTTTCATAACCAGTTGCTCGGCCATACGTTTACTTT +TTGCGTATACATGTCCTGGTGATATATCATAAAGGGTATGCTCATGACCGATGAATGGATTACCGTGTTT +ATTTGGTCCTATTGCTTCCATGCTACTAGTATAGATCAAATACTTGATTCCTAGGTCCACACAAGCTGCC +AATATAGTCTGTGTTCCATAATAGTTTACTTTCATGATTTCATTATCAGTGTATTTTCCAAATACATCCA +CTAGAGCAGCCGTATGAATAATCAGATTTACCCCATCTAGCGCTTCTCTCACCTTATCAAAGTCGTTTAT +ATCACATTGTATATAGTTTATAACCTTAACTTTCGAGGTTATTGGTTGTGGATCTTCTACAATATCTATG +ACTCTTATTTCTTGAACATCATCTGCGCTAATTAAAAGTTTTACTATATACCTGCCTAGAAATCCGGCAC +CGCCAGTAACCGCGTACACGGCCATTGCTGCCACTCATAATATCAGACTACTTATTCTATTTTACTAAAT +AATGGCTGTTTGTATAATAGACCACGATAATATCAGAGGAGTTATTTACGTTGAACAAGTCCATGGAAAA +GATAAAGTTTTAGGATCAGTTATTGGATTAAAATCCGGAACGTATAGTTTGATAATTCATCGTTACGGAG +ATATTAGTCGAGGATGTGATTCCATAGGCAGTCCAGAAATATTTATCGGTAACATCTTTGTAAACAGATA +TGGTGTAGCATATGTTTATTTAGATACAGATGTAAATATATCTACAATTATTGGAAAGGCGTTATCTATT +TCAAAAAATGATCAGAGATTAGCGTGTGGAGTTATTGGTATTTCGTACATAAATGAAAAGATAATACATT +TTCTTACAATTAACGAGAATGGCGTTTGATATATCAGTTAATGCGTCTAAAACAATAAATGCATTAGTTT +ACTTTTCTACTCAGCAAGATAAATTAGTCATACGTAATGAAGTTAATGATATACACTACACTGTCGAATT +TGATAGGGACAAAGTAGTTGATACGTTTATTTCATATAATAGACATAATGACTCCATAGAGATAAGAGGG +GTGCTTCCAGAGGAAACTAATATTGGTCGCGTGGTTAATACGCCGGTTAGTATGACTTACTTGTATAATA +AGTATAGTTTTAAACCGATTTTAGCAGAATATATAAGACACAGAAATACTATATCCGGCAACATTTATTC +GGCATTGATGACGCTAGATGATTTGGTTATTAAACAGTATGGAGACATTGATCTATTATTTAATGAGAAA +CTTAAAGTAGACTCCGATTCGGGACTATTTGACTTTGTCAACTTTGTAAAGGATATGATATGTTGTGATT +CTAGAATAGTAGTAGCTCTATCTAGTCTAGTATCTAAACATTGGGAATTGACAAATAAAAAGTATAGGTG +TATGGCATTAGCCGAACATATAGCTGATAGTATTCCAATATCTGAGCTATCTAGACTACGATACAATCTA +TGTAAGTATCTACGCGGACACACTGATAGCATAGAGGATGAATTTGATTATTTTGAAGACGATGATTTGT +CTACATGTTCTGCCGTAACCGATAGGGAAACGGATGTATAATTTTTTTTATAGTATGAAGGATATGATGG +ATATGATGATATGATGGATATGATGGATATGATGGATATGATGGATATGATAAAAAAATATAATTGTTGT +ATCCATTCCCATTCAAATCACCTTATATGATTCTGTAACACAATGAAGGAGTCTCATAGATATATAGAGG +TCAGATACTGGTTTGATAAACTTTTTATTCCACATGAGCATGTTTGACTTATGGTTAGACACACATACTT +TAACAAATCACTGAAAATTGGAGTTAGGTATTCCTCTCAGAATCAGTTGCCGTTCTGGAACATTAAATGT +ATTTTTTATGATATACTCCAACGCATTTATGTGGGTATACAACAAGTCATTAATAATGAGTATTTCCAAG +AGTTTTAGTTGTCTAGTATTTAACAAGAGAAGAGATTTCAACAGACTGTTTATGAACTCGAATACCGCCT +CATTGTCGCTTATATTGATGACATGACATCGAATTCCCAATATCAATCTCATCAGTGATGAGTAGCTCAA +TCTTGTTATCGGGATCCAATTTCTAAAGATGTCATTAAACCCTCGATCGTGAATGGATTTATCATCATCG +TTTTTATGTTGGACATGAGCTTAGTCCGTTTGTCCACATCTATATACGATGATTTCTGAATTATTTCATA +TATCTCTCGTTAACTCCAGGAACTTGTCAGGGATCTAACTTTAATATGTTCTCGTCTAAGAGATGAAAAT +CTTTGGATGGTTGCATGTGACTTTTCTCTAAAGGATGATGTTACCCGATCCTCTCTTAAATGACTCCATC +TTATCCTTGGACAAGATGGACAGTCTATTTTCCTTAGATGGTTTAATATTTTTTACCCATGATCTATAAA +GGTAGACAGACCTAATCGTCTCGGATGACCATATATTATTTTCCGTTTTATTATACGCATAAATTGTAAA +AAATATGTTAGGTTTACGAAAATGTCTCGTGGGGCATTAATCGTTTTTGAAGGATTGGACAAATCTGGAA +AAACAACACAATGTATGAACATCATGGAATCTATACCGGCAAACACGATAAAATATCTTAACTTTCCTCA +GCGATCCACAGTCACTGGAAAGATGATAGATGACTATCTAACTCGTAAAAAAACCTATAATGATCATATA +GTTAATCTATTATTTTGTGCAAATAGATGGGAGTTTGCATCTTTTATACAAGAACAACTAGAACAGGGAA +TTACTTTAATAGTTGACAGATACGCGTTCTCTGGAGTAGCGTATGCCACCGCTAAAGGCGCGTCAATGAC +TCTCAGTAAGAGTTATGAATCTGGATTGCCTAAACCCGACTTAGTTATATTCTTGGAATCTGGTAGCAAA +GAAATTAATAGAAACATCGGCGAGGAAATTTATGAAGATGTTGAATTCCAACAAAAGGTATTACAAGAAT +ATAAAAAAATGATTGAAGAAGGAGATATTCATTGGCAAATTATTTCTTCTGAATTCGAGGAAGATGTAAA +GAAGGAGTTGATTAAGAATATAGTTATAGAGGCTATACACACGGTTACTGGACCAGTGGGGCAACTGTGG +ATGTAATAAAATGAAATTACATTTTTATAAATAGATGTTAGTACAGTGTTATAAATGGATGAAGCATATT +ACTCTGGCAACTTGGAATCAGTACTCGGGGATACGTGTCCGATATGCATACCGAACTCGCATCAATATCT +CAATTAGTTATTGCCAAGATAGAAACTATAGATAATGATTATTAAACAAGGACATTGTAAATTTTATCAT +GTGTAGATCAAACTTGGATAATCCATTTATCTCTTTCCTAGATACTGCATATACTATCATAGATCAAGAG +ATCTATCAGAACGAGTTGATTAATTCATTAGACGATAATGAAATTATCGATTGTATAGTTAACAAGTTTA +TGAGCTTTTATAAGGATAACCTAGAAAATATGGTAGATGCTATCATTACTCTAAAATATTATAATTAATA +ATCCAGATTTTAAAACTACGTATGTGGAAGTACTCGGTTCCAGAATAGCTGATATAGATATTAAACAAGT +GATACGTAAGAATATAATACAATTGTCTAATGATCCGCGAACGATATTTGTGAAAATATTAAAAAAAAAT +ACTTTTTTTATTAAATGACGTCTCTTCGCGAATTTAGAAAATTATGCTGTGATATATATCACGCATCAGG +ATATAAAGAAAAATCTAAATTAATTAGAGACTTTATAACAGATAGAGATGATACCGATACATATTTGATC +ATTAAGCTATTGCTTCCCGGATTAGACGATAGAATGTATAACATGAACGATAAACAAATTATAAAATTAT +ATAGTATAATATTTAAACAATCTCAGGAAGATATGCTACAAGATTTAGGATACGGATATATAGGAGACAC +TATTAGGACTTTCTTCAAAGAGAACACGGAAATCCGTCCACGAGATAAAAGCATTTTAACTTTAGAAGAA +GTGGATAGTTTTTTAACTACGTTATCATCAGTAACTAAAGAATCACATCAAATAAAATTATTGACTGATA +TAGCATCTGTTTGTACATGTAATGATTTAAAATGTGTAGTCATGCTTATTGATAAAGATCTAAAAATTAA +AGCGGGTCCTCGGTACGTGCTTAACGCTATTAGTCCTCATGCCTATGATGTTTTTAGAAAATCTAATAAC +TTGAAAGAGATAATAGAAAATGCAGCTAAACAAAATCTAGACTCTATATCTATTTCTGTTATGACTCCAA +TTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTTTAAAAAATTTCCATCAGGAATGTT +TGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCATAAAAAAAATAACGAGTTTGCATTCTTTAGT +AGAAACATGAAACCAGTACTCTCTCATAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAA +AAGCTACGTCTATCGTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACCGCTACCGTTTGG +AAGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTATTTGACTGTTTA +TACTTTGATGGATTCGATATGACAGACATTCCATTGTATGAACGAAGATCTTTTCTCAAAGATGTTATGG +TCGAAATACCCAATAGAATAGTATTCTCAGAGTTGACGAATATTAGTAACGAGTCTCAGTTAACTGATGT +ATTAGATGATGCACTAACGAGAAAATTAGAAGGATTGGTCTTAAAAGATATTAATGGCGTATACGAACCG +GGAAAGAGAAGATGGTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATT +TAGTAGTACTAGGTGCCTACTATGGTAAAGGAGGAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTG +TTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTCCGGTCACGATGATAATACGTTAAGG +GTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGGATCCCAAAAAAATTCCAGAGTGGTTGGTAG +TTAATAAAATCTATATTCCCGATTTTGTAGTAGATGATCCGAAACAATCTCAGATATGGGAAATTTCAGG +AGCAGAGTTTACATCTTCCAAGTCACATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTACTAGG +ATTAGAGAAGATAAAACGTGGAAAGAATCTACTCATCTAAACGATTTAGTAAACTTGACTAAATCTCTTA +ATAGTTACATATAAACTGAAAAATAAAATAACACTATTTTAGTTGGTAGTCGCCATGGATGGTGTTATCG +TATACTGTCTAAATGCGTTAGTAAAACATGGCGAGGAAATAAATCATATAAAAAATGATTTCATGATTAA +ACCATGTTGTGAAAGAGTTTGTGAAAAAGTCAAGAACGTTCACATCGGCGGACAATCTAAAAACAATACA +GTGATTGCAGATTTGCCATATCTGGATAATGCTGTATCAGATGTATGCAAATCAATATATAAAAAGAATG +TATCAAGAATATCCAGATTTGCTAATTTGATAAAAATAGATGACGATGACAAGACTCCTACCGGCGTATA +TAATTATTTTAAACCTAAAGATGCTATTCCTGTTATTATATCCATAGGAAAGGATAAAGATGTCTGTGAA +CTATTAATCTCATCTGATAAAGCGTGTGCGTGTATAAAGTTAAATTTATATAAAGTAGCCATTCTTCCCA +TGGATGTTTCCTTTTTTACCAAAGGAAATGCATCATTGATTATTCTCCTGTTTGATTTCTCTATCGATGC +GGCACCTCTCTTAAGAAGTGTAACCGATAATAATGTTATTATATCTAGACACCAGCGCCTACATGACGAG +CTTCCGAGTTCCAATTGGTTCAAGTTTTACATAAGTATAAAGTCCGACTATTGTTCTATATTATATATGG +TTGTTGATGGATCTATGATGTATGCGATAGCTGATAATAGAACTCACGCAATTATTAGCAAAAATATATT +AGACAATACTACGATTAACGATGAGTGTAGATGCTGTTATTCTGAACCACAGATTAGGATTCTTGATAGA +GATGAGATGCTCAATGGATCATCGTGTTATATGAACAGACATTGTATTATGATGAATTTACCTGATGTAG +GCGAATTTGGATCTAGTATGTTGGGGAAATATGAACCTGACATGATTAAGATTGCTCTTTCGGTGGCTGG +TAATTTAATAAGAAATCGAGACTACATTCCCGGGAGACGAGGCTATAGCTACTACGTTTACGGTATAGCC +TCTAGATAATTTTTTTTAAGCACGAAATAAAAACATAATTTTAAACAATCTATTTCATACTATTTTGTGT +GCTCACCATGAACATAAAGATAGATATATTAGTATTTCTGGTGATAAATTTACGGCGACTGCTAGGAGGG +AAAATGAAGAAAGAAAAAATATCTACCTCTCCAAAAAGAAAAACTACTGATGTTATCAAACCTGATTATC +TTGAGTACAATGACTTGTTAGATAGAGATGAGATGTCTACTATTCTAGAGGAATATTAGGCCTTAGAATA +AAATATGGACGACTCTTAACGAAATTAGAAAATTCGATAATGATGTTGAAGAACAATTCGGTACTATAGA +AGAACTCAAGCAGAAGCTTAGATTAAATTCTGAAGAGAGAGCAGATAATTTTATAGATTATATAAAGGTA +CAAAAACAGGATATCATCAAACTTACTGTATACGATTGCATATATCTATGATAGGATTGTGTGCGTGCGT +GGTAGATGTTTGGAGAAATGAGAAACTGTTTTCTAGATGGAAATATTGGTTACAAGCGATTAAACTGTTT +ATTGATGATCACATGCTTGATAAGATAAAATCTATTGTAGAATAGACTAGTGTATGTGGAAATGTCATAG +AAAGTTAAAAGTTAATGAGAGCAAAAATATATAAGGTTGTATTCCATATTTGTTATTTTTTTCTGTAATA +GTTAGAAAATACATTCGATGGTCTATCTACCAGATTATTATGTGTTATAAGGTACTTTTCTCATAATAAA +CTAGAGTATGAGTAAGATAGTGTTTTTCAAAAACATATAAATCTAAAATTGATGGATGAGATATACAGCT +ATTAATTTCGAAAATATATTTTAATCTGATAACTTTAAACATGGATTTTTGATGGTGGTTTAAGTTTAAA +AAAGATTTTGTTATTGTAGTATGATAATATCAAAAAGATGGATATAAAGAATTTACTGACTACATGTACT +ATTTTACATTACTACATTGGCTACGGCATATATACCTATTTCGTCACTTCCACACGCTCCGGTAAACGGG +TGTCATGTGACGAGGGAGAATCTTGATAAGAGGCATAATCAATGTTGTAATCCGATGTCCACCTGGAGAA +TTTGCCAAGGTCAGATGTAGAGTTGGTAGTGATAACACAAAATGTGAACACTGCCCACCTCATACATATA +CCGCAATCCCCAATTATTCTAATAGATGTCATCAATGTAGAAAATGCCCAACAGGATCATTTGATAAGGT +AAAGTGTACCGGAACACAGAACAAATGTTCGTGTCATCCTGGTTGGTATACGCTACTGATTCTTCACAGA +CTGAAGATTGTCGAGATTTGTGTACCAAAAAAGGAGATGTCCATGCGGATACTTTGGTGGAATAGATGAA +GGAAATCCTATTTGTAAATCGTGTTGTGTTGGTGAATATTGCGACTACCTACGTAATTATAGACTTGATC +CATTTCCTCCATGCAAACTATCTATCTAAATGTAATTAATTATGATTTTGATGATAATGTTACCATACAT +TATATCACTACTTGGTTAGTGTGTATTATTTAGTATGGAAGACCTATTAATAATTACTTATCTTTTGACG +ATCTTGTTATAATTATAATATAAAAATACTTATGACATAGTAACTCATAATTGCTGACGCGATAAATTCG +TAATAATCTGTTTTGTTCAAATTTTTATAAGGAATCTACAGGCATAAAAATAAAAATATAATCTATAATA +TACTCTTACAACGCCATCATGAATAGCAGTGAATTAATTGCTGTTATTATGGATTTAGAAATAGTGGACG +ATTTTGTGATATTAATATAGTTATTAATGATGAAAGGATAAACGCGCATAGACTCATCCTATCTGGAGCC +TCCGAATATTTTTTCCATTCTGTTTTCCAATAATTTTATCGATTCTAATGAATACGAAGTTAATCTAAGT +CATTTAGATTATCAAAGTGTTAACTATTTGATCGATTACATTTATGGGATACCTTTGAGCCTAACTAACA +ATAACGTGAAATATATTCTTTCAACCGCTGATTTTTTTACAAATTGGATCTGTCATTACTGAGTGCGAAA +AATACATACTTAAAAATCTTTGTTTTAGAAACTGTATCGATTTCTACATATACGCTGATAAATATAATAA +CAAGAAAATAGAATTAGCATCGTTTAACACAATATTACGAAATATTTTGAGACTCATCAACAATGAAAAC +TTTAAATACTTAACAGAGGAATCAATGATAAAAATTTTAAGCGATGATATGTTATATATAAAAAATGAGG +ATTTCACCCCACTGATTCTCATTAAATGGTTAGAGAGTACACCAACCATGTACCGTCGAGTTACTTAGAT +GCCTCAGAATATCATTTCTTTCCCCACAAGTTATAAAATCACTTTATAGTCATCGACTGGTTAGTTCAAT +CTACGAATGTATAACATTCTTAAACAATATAGCATTCTTGGATAAATCATTTCCTAGATACCATATCATC +GAGTTGATATCTATCGGTATAAGTAATTCACATGATAAGATTTCCATAAACTGCTACAATCATAAAAAAA +TTCATGGGAAATGATATCTTCACGTAGATATAGGTGTAGTTTCGCAGTGACCGTCCTGGATAATATTATC +TATATGATGGGTGGATATGATCAGTCCCTGTATAGAAGTTCAAAGGTTATAGCGTACAATACATGTACTA +ATTCTTGGATATATGATATACCAGAGCTAAAAATATCATCGTTCTAATTGCGGAGGAGTTGCCAATGACG +AATACATTTATTGTATAGGCGGTATACGCGATCAGGAGTCATCGTTGATATCTAGTATCGATAGATGGAA +GCCATCAAAACCATATTGGCAGAAGTATGCTAAAATGTGCGAACCAAAATGTGATATGGGGTTGCGATTT +TAAACGGATTAATATATGTCATAGGTGGAGTCGTTAAAGGTGACACACATATACCAACGCACTAGAGAGT +TTATCAGAAGATGGATGGATGAATCATCAACGTCTTCCAATAAAAATGTCCAATATGTCGACGATTGTTC +ATGCTGGAAAGATTTATATATCTAGAGGTTACAACAATAGTAGTGTAGTTAATGTAATATCGAATCTAGT +CCTTAGCTATAATCCGATATATGATGAATGGACCAAATTATCATCATTAAATATTCCTAGAATTAATCCT +GCTCTATGGTCAGTGTATAATAAATTATATGTAGGAGGAGTAATATCTGATGATGTTCAAACTAATACAT +CTGAAACATACGATAAAGAAAAAGATTGTTGGACATTGGATAATGGTCACTTGTTACCACATAATTATAT +AATGTATAAATGCGAACCGTTTAAACATAGATATCCATTGGAAAAAACACAGTACACGAATGATTTTCTA +AAGTATTTGGAAAGTTTTATAGGTAGTTGATAGAACAAAATACATAATTTTGTAAAAATAAATCACTTTT +TATACTAATATGACACAATTACCAATACTTTTGTTACTAATATCATTAGTATACGCTACACCTTCTCCTC +AGACATCTAAAAAAATAGGTGATGATGCAACTATATCATGTAGTCGAAATAATACAAATTACTACGTTGT +TATGAGTGCTTGGTATAAGGAGCCCAATTCCATTATTCTCTTAGCTGCCAAAAGCGACGTCTTGTATTTT +GATAATTATACCAAGGATAAAATATCTTACGACTCTCCATACGATGATCTAGTTACAACTATCACAATTA +AATCATTGACTGCTGGAGATGCCGGTACTTATATATGTGCATTCTTTATGACATCGACTACAAATGATAC +TGATAAAGTAGATTATGAAGAATACTCCATAGAGTTGATTGTAAATACAGATAGTGAATCGACTATAGAC +ATAATACTATCTGGATCTACACCAGAAACTATTTCTGAGAAACCAGAGGATATAGATAATTCTAATTGCT +CGTCTGTATTCGAAATCACGACTCCGGAACCAATTACTGATAATGTAGACGACCATACAGACACCGTCAC +ATACACTAGTGATAGCATTAATACAGTAAATGCATCATCTGGAGAATCCACAACAGACGAGATTCCGGAA +CCAATTACTGATAAAGAAGAAGATCATACAGTAACAGACACTGTCTCATACACTACAGTAAGTACATCAT +CTGGAATTGTCACTACTAAATCAACCACCGATGATGCGGATCTTTATGATACATACAATGATAATGATAC +AGTACCGCCAACTACTGTAGGTGGTAGTACAACCTCTATTAGCAATTATAAAACCAAGGACTTCGTAGAA +ATATTTGGTATTACCACATTAATTATATTGTCAGCAGTGGCGATTTTCTGTATTACGTATTATATATGTA +ATAAACACCCACGTAAATACAAAACAGAGAACAAAGTCTAGATTTTTGACTTACATAAATATCTGGGATA +ATAAAATCTATCATATTGAGAGGACCATCTGGTTCAGGAAAGACAGCCATAACCAAAAGACTGTTAAAAG +ACTATGGGAATATATTTGGATTTGTGGTGTCCCATACCACTAGATTTCCTCGTCCTATGGAACGAGAAGG +TGTTGATTACCTTACGTTAACAGAGAGGCCATCTGGAAGGGAATAGCCGCCGGAAACTTTCTAGAACATA +CTGAGTTTTTAGGAAATATTTACGGAACTTCTAAAACAGCTGTAAATACAGCGGTTATTAATAATCGTAT +TTGCGCGATGGATTTAAACATCAACGGTGTTAGAAGTCTTAAAAATACTTACCTAATGCATTACTTGGGT +ATATAAGACCTACCTCTCTTAAAATGGTTGAGACCAATCTTCGTCGTAGAAACACTGAAGCGGACGACGA +ATCTCATCGTCGCGTGATGTTGGCAAAAAACGGATATGGATGAGGTCAACGAAGCAGGTCTATTCGACAC +TATTATTATTGAAGATGATGTGAATTTAGCATATAGTAAGTGTTAATTCAGATACTACAGGACCGTATTA +GAATGTATTTTAACACTAATTAGAGACTTAAGATTTGACTTAAAACTTGATAATTAATAATATAACTCGT +TTTTATATGTGGCTATTTCAACGTCTAATGTATTAGTTAAATATTAAAACTTACCACGTAAAACTTAAAA +TTTAAAATGGTATTTCATTGACAGATCATACATTATGAAGTTTCAAGGACTTGTGTTAATTGACAATTGC +AAAAATCAATGGGTCGTTGGACCATTAATAGGAAAAGGTGGATTCGGTAGTATTTATACTACTAATGACA +ATAATTATGTAGTAAAAATAGAGCCCAAAGCTAACGGATCATTATTTACCGAACAGGCATTTTATACTAG +AGTACTTAAACCATCCGTTATCGAAGAATGGAAAAAATCTCACAATATAAAGCACGTAGGTCTTATCACA +TGCAAGGCATTTGGTTTATACAAATCCATTAATGTGGAATATCGATTCTTGGTAATAAATAGATTAGGTG +CAGATCTAGATGCGGTGATCAGAGCCAATAATAATAGACTACCAGAAAGGTCGGTGATGTTGATCGGAAT +CGAAATCTTAAATACCATACAATTTATGCACGAGCAAGGATATTCTCACGGAGATATTAAAGCGAGTAAT +ATAGTCTTGGATCAAATAGATAAGAATAAATTATATCTAGTGGATTACGGATTGGTTTCTAAATTCATGT +CTAACGGCGAACATGTTCCATTTATAAGAAATCCAAATAAAATGGATAACGGTACTCTAGAATTTACACC +TATAGATTCGCATAAAGGATACGTTGTATCTAGACGTGGTGATCTAGAAACACTTGGATATTGTATGATT +AGATGGTTGGGAGGTATCTTGCCATGGACTAAGATATCTGAAACAAAGAATTCTGCATTAGTAAGTGCCG +CAAAACAGAAATATGTTAACAATACTGCGACTTTGTTAATGACCAGTTTGCAATATGCACCTAGAGAATT +GCTGCAATATATTACCATGGTAAACTCTTTGACATATTTTGAGGAACCCAATTACGACGAGTTTCGTCGA +GTATTAATGAATGGAGTTATGAAAAATTTTTGTTGATAAAAAAATTAAAAAAATAACTTAGTTATTATCA +CTCTCGTGAGTACAATAGAAACATGGCGATGTTTTACGCACACGCTTTCGGTGGGTACGACGAGAACCTT +CATGCATTTCCTGGAATATCATCGACGGTTGCCAATGATGTCAGGAAATATTCTGTTGTGTCAGTTTATA +ATAAAAAGTATAACATTGTAAAAAACAAATATATGTGGTGTAACAGTCAAGTGAACAAGAGATATATTGG +AGCACTACTGCCTATGTTTGAATGCAATGAATATCTACAAATTGGAGATCCAATCCATGATCTAGAAGGA +AATCAAATCTCTATTGTCACATATCGCCACAAAAACTACTATGCTCTAAGTGGAATTGGGTACGAGAGTC +TAGACTTGTGTTTGGAAGGAGTAGGGATTCATCATCACGTACTTGAAACAGGAAACGCGGTATATGGAAA +AGTTCAACATGAGTATTCTACTATCAAAGAGAAGGCCAAAGAAATGAATGCACTCAAACCAGGACCTATC +ATCGATTACCACGTCTGGATAGGAGATTGTGTCTGCCAAGTTACTACTGTAGACGTGCATGGAAAGGAAA +TTATGAGAATGAGATTCAAAAGGGGTGCGGTGCTTCCGATTCCAAATCTGGTAAAAGTTAAAGTTGGGGA +GGAAAATGATACAATAAATCTTTCCACTTCCATATCAGCTCTCCTAAATTCCGGTGGCGGCACCATCGAG +GTAACATCTAAGGAAGAACGTGTAGATTATGTACTCATGAAACGTTTGGAATCTATACATCATTTGTGGT +CTGTAGTGTATGATCATCTTAATGTTGTGAATGGCGAAGAACGATGTTATGTACATATGCATTCATCTCA +TCAAAGTCCTATGCTGAGTACTGTAAAAACAAATTTGTACATGAAGACTATGGGAGCATGTCTTCAAATG +GACTCCATGGAAGCTCTAGAGTATCTTAGTGAACTGAAGGAATCAGGTGGGCGGAGTCCCAGACCAGAAT +TGCAGAAATTTGAATATCCAGATGGAGTGAAAGACACTGAATCAATTGAGAGATTGGCAGAGGAGTTCTT +CAATAGATCAGAACTTCAGGCCGGTGAATCAGTCAAATTTGGTAATTCTATTAATGTTAAACATACATCT +GTTTCAGCTAAGCAACTAAGAACACGTATACGACAGCAGCTTCCTTCTATACTCTCATCTTTTGCCAACA +CAAAGGGTGGATATTTGTTCATTGGAGTTGATAATAATACACACAAAGTAATTGGATTCACGGTGGGTCA +TGACTACCTCAAACTGGTAGAGAGTGATATAGAAAAGTATATCCAAAAACTTCCTGTTGTGCATTTCTGC +AAGAAAAAAGAGGACATCAAGTACGCATGTAGATTCATCAAGGTGTATAAACCTGGTGATGAGACTACCT +CGACATATGTGTGCGCAATCAAAGTGGAAAGATGCTGCTGTGCTGTGTTTGCGGATTGGCCAGAATCATG +GTACATGGATACTAGTGGTAGTATGAAGAAGTATTCTCCAGATGAATGGGTGTCACATATAAAATTTTAA +TTAGGGTAAGGTAAAACTATATATAATAACTAACAATTTGTGTATCATATAGACAATTAATTAGGTAACT +GTTATCTCTTTTTAACTAACTAACTAACTAACTAACTCTTATATACTATTAATAATACATCTATTAATCA +TTGATTAGCTTATTGCTTTAATTGTTTTTGTAAACTAACACTGTTCATTGAAAAGGGATAACATGTTACA +GAATATAAATTATATATGGATTTTTTTAAAAAGGAAATACTTGACTGGAGTATATATTTATTTCTTCATT +ACATAACACGTCTGTGTTCTAATTCTTCCAATTCTTCCACATCTCATATAATACAGGAATATAATCTTGT +TCGAAAATATGAGAAAGTGGATAAAACAATAGTTGATTTTTTATCTAGGTGGCCAAATTTATTCCATATT +TTAGAATATGGGGAAAATATTCTACATATTTATTTTATAGATGCTGCTAATACGAATATTATGATTTTTT +TTCTAGATAGAGTATTAAATATTAATAAGAACCGTGGGTCATTTATACATAATCTCGGGTTATCATCCAT +TAATATAAAAGAATATGTATATCAATTAGTTAATAATGATCATCTAGATAATAGTATAAGACTAATGCTT +GAAAATGGACGTAGAACAAGACATTTTTTGTCTTATATATTGGATACAGTTAATATCTATATAAGTATTT +TAATAAATCATAGATTTTATATAGATGCCGAAGACAGTTACGGTTGTACATTATTACATAGATGTATATA +TAACTATAAGAAATCAGAATCAGAATCATATAATGAATTAATTAAGATATTGTTAAATAATGGATCAGAT +GTAGATAAAAAAGATACGTACGGAAACACACCGTTTATCCTATTATGTAAACACGATATCGACAACGCGG +AATTGTTTGAGATATGTTTAGAGAATGCTAATATAGACTCTGTAGACTTTAATGGATATACACCTCTTCA +TTATGTCTCATGTCGTAATAAATATGATTTTGTAAAGTTATTAATTTCTAAAGGAGCAAATGTTAATGCA +CGTAATAGATTCGGAACTACTCCATTTTATTGTGGAATTATACACGGTATCTCGCTTATAAAACTATATT +TGGAATCAGACACAGAGTTAGAAATAGATAATGAACATATAGTTCGTCATTTAATAATTTTTGATGCTGT +TGAATCTTTAGATTATCTATTGTCCAGAGGAGTTATTGATATTAACTATCGTACTATATACAACGAAACA +TCTATTTACGACGCTGTCAGTTATAATGCGTATAATACGTTAGTCTATCTATTAAACAGAAATGGTGATT +TTGAGACGATTACTACTAGTGGATGTACATGTATTTCGGAAGCAGTCGCGAACAACAACAAAATAATAAT +GGATATACTATTGTCTAAACGACCATCTTTGAAAATTATGATACCATCTATGATAGCAATTACTAAACAT +AAACAACATAATGCAGATTTATTGAAAATGTGTATAAAATATACTGCGTGTATGACCGATTATGATACTC +TTATAGATGTACAATCGCTACATCAATATAAATGGTATATTTTAAAATGTTTTGATGAAATAGATATCAT +GAAGAGATGTTATATAAAAAATAAAACTGTATTCCAATTAGTTTTTTGTATCAAAGACATTAATACTTTA +ATGAGATACGGTAGACATCCTTCTTTCGTGAAATGTAATATTCTTGACGTATACGGAAGTTGTGTACGTA +ATATCATAGCATCTATTAGATATCGTCAGAGATTAATTAGTCTATTATCCAAGAAGCTGGATGCTGGAGA +TAAATGGTCGTGTTTTCCTAACGAAATAAAATATAAAATATTGGAAAACTTTAACGATAACGAACTGACC +ACATATCTGAAAATCTTATAAACACTATTAAAATATAAAATCTAAGTAGGATAAAATCACACTACATCAT +TGTTTCCTTTTAGTGCTCGACAGTGTATACTATTTTTAACACTCATAAATAAAAATGAAAACGATTTCCG +TTGTTACGTTGTTATGCGTACTACCTGCTGTTGTTTATTCAACATGTACTGTACCCACTATGAATAACGC +TAAATTAACGTCTACCGAAACATCGTTTAATGATAAACAGAAAGTTACGTTTACATGTGATTCAGGATAT +CATTCTTTGGATCCAAATGCTGTCTGTGAAACAGATAAATGGAAATACGAAAATCCATGCAAGAAAATGT +GCACAGTTTCTGATTATGTCTCTGAACTATATGATAAGCCATTATACGAAGTGAATTCCACCATGACACT +AAGTTGCAACGGTGAAACAAAATATTTTCGTTGTGAAGAAAAAAATGGAAATACTTCTTGGAATGATACT +GTCACGTGTCCTAATGCGGAATGTCAACCTCTTCAATTAGAACACGGATCGTGTCAACCAGTTAAAGAAA +AATACTCATTTGGGGAATATATGACTATCAACTGTGATGTTGGATATGAGGTTATTGGTGTTTCGTATAT +AAGTTGTACGGCTAATTCTTGGAATGTTATTCCATCATGTCAACAAAAATGTGATATACCGTCCCTATCT +AATGGATTAATTTCCGGATCTACATTTTCTATCGGTGGCGTTATACATCTTAGTTGTAAAAGTGGTTTTA +CACTAACGGGGTCTCCATCATCCACATGTATCGACGGTAAATGGAATCCCATACTCCCAACATGTGTACG +ATCTAACGAAGAATTTGATCCAGTGGATGATGGTCCCGACGATGAGACAGATCTGAGCAAACTCTCGAAA +GACGTTGTACAATATGAACAAGAAATAGAATCGTTAGAAGCAACTTATCATATAATCATAATGGCGTTGA +CAATTATGGGTGTCATATTTCTAATCTCCATTATAGTATTAGTTTGTTCCTGTGACAAAAATAATGACCA +ATATAAGTTCCATAAATTGCTACCGTGAATATAAATCCGTTAAAATAATTAATAATTAATAATTAATAAC +GAACAAGTATCAAAAGATTAAAGAATTAGCTAGAATCAATTAGATGTCTTCTTCAGTGGATGTTGATATC +TACGATGCCGTTAGAGCATTTTTACTCAGGCACTATTATGACAAGAGATTTATTGTGTATGGAAGAAGTA +ACACCATATTACATAATATATACAGGCTATTTACAAGATGCACCGTTATACCGTTCGATGATATAGTACG +TACTATGCCAAATGAATCACGTGTTAAACAATGGGTGATGGATACACTTAATGGTATAATGATGAATGAA +TTCGATACTGTATGTGTGGGTACCGGACTACGATTCATGGAAATGTTTTTCGATTACAATAAAAATAATC +CCAAAAATAGCATCAACAATCAAATAATGTATGATATAATTAATAGCGTAGCCATAATTCTAGCTAATGA +GAGATATAGAAGCGCGTTTAACGACGATAGAATATACATCCGTAGAACTATGATGGACAAATTGTACGAA +TACGCATCTCTAACTACTATTGGTACGATCACTGGAGGTGTTTGTTATTTTATCTGTTGATGCATCTAGT +TAGTTTGTATAAATAATTATTTCGATATACTAGTTAAAATTTTAAGATTTTAAATGTATAAAAAACTAAT +AACGTTTTTATTTGTAATAGGTGCAGTTGCATCCTATTCGAATAATGAGTACACTCCGTTTAATAAACTG +AGTGTAAAACTCTATATAGATGGAGTAGATAATATAGAAAATTCATATACTGATGATAATAATGAATTGG +TGTTAAATTTTAAAGAGTACACAATTTCTATTATTACAGAGTCATGTGACGTCGGATTTGATTCCATAGA +TATAGATGTTATAAACGACTATAAAATTATTGATATGTATACCATTGACTCGTCTACTATTCAACGCAGA +GGACATACGTGTAGAATATCTACCAAATTATCATGCCATTATGATAAGTACCCTTATATCCACAAATATG +AGGGTGATGAACGACAATATTCTATTACCGCAGAGGGAAAATGCTATAAAGGAATAAAATATGAAATAAG +TATGATGAACGATGATACTCTATTGAGAAAACATACTCTTAAAATTGGATTTACTTATATATTCGATCGT +CATGGGCATAGTAATACATATTATTCAAAATATGATTTTTAAAAATTTAAAATATATTATCACTTCAGTG +ACAGTAGTCAAATAACAAACAACACCATGAGATATATTATAATTCTCGCAGTTTTGTTCATTAATAGTAT +ACATGCTAAAATAACTAGTTATAAGTTTGAATCCGTCAATTTTGATTCCAAAATTGAATGGACTGGGGAT +GGTCTATACAATATATCCCTTAAAAATTATGGCATCAAGACGTGGCAAACAATGTATACAAATGTACCAG +AAGGAACATACGACATATCCGGATTTCCAAAGAATGATTTCGTATCTTTCTGGGTTAAATTTGAACAAGG +CGACTATAAAGTGGAAGAGTATTGTACGGGACTATGTGTCGAAGTAAAAATTGGACCACCAACTGTAATA +TTGACTGAATATGACGATCATATCAATTTGTTCATCGAGCATCCGTATGCTACTAGAGGTAGCAAGAAGA +TTCCTATTTACAAACGCGGTGACATGTGTGATATCTACTTGTTGTATACGGCTAACTTCACATTCGGAGA +TTCTGAAGAACCAGTAACATATGATATCGATGACTACGATTGCACGTCTACAGGTTGCAGTATAGACTTT +GCCACAACAGAAAAAGTGTGTGTGACAGCACAGGGAGCCACAGAAGGGTTTCTCGAAAAAATTACTCCAT +GGAGTTCGGAAGTATGTCTGACACCTAAAAAGAATGTATATACGTGCGCAATTAGATCTAAAGAAGATGT +TCCCAATTTCAAGGACAAAATAGCCAGAGTTATCACGAGAAAATTTAATAAACAGTCTCAATCTTATTTG +ACTAAATTTCTCGGTAGCACATCGAATGATGTTACAACTTTTTTTAGCATTCTTGACTAAATATTCATAA +CTAATTTTTATTAATGATACAAAAATGAAATAAACTGTATATTATACACTGGTTAACGCCCTTGGCTCTA +ACCATTTTCAAGATGAGGTCCCTGATTATAGTCCTTCTGTTCCCCTCTATCATCTACTCAATGTCTATTA +GACGATGCGAGAAGACTGAAGAGGAAACATGGGGATTAAAAATAGGGTTGTGTATAATTGCCAAAGATTT +CTATCCCGAAAGAACTGATTGCAGTGTTCATCGCCCAACTGCAAGTGGAGGATTGATAACTGAAGGCAAT +GGATTCAGAGTAGTTATATATGATCAATGTACAGAACCCCATGACTTTATTATCACCGATACTCAACAAA +CACGTCTTGGATCATCTCATACATATATTAAATTCAGTAACATGAATACAGGTGTCCCATCTAGTATTCC +AAAATGTTCCAGAACTCTCTGTATTTCTGTATATTGTGATCAAGAGGCGGGAGACATAAAATTTGAGGAG +TATACTCAAGAATCAAGTGATATCAGTATTAGAGTTAAGTATGATTCATCATGTATTGATTATCTGGGTA +TTAATCAAAGTTTCATGAATGAATGTATTCGAAGAATTACAACATGGGATAGAGAATCATGCGTCAGAAT +TGATACACAGACTATAAATAAATATCTTAAGTCTTGCACCAACACAAAATTCGACCGTAATGTCTACAAA +AGGTACATACTGAAGAGTAAAGCACTCCATGCTAAAACAGAGTTGTAATAGATATAAAATACTTTTTATA +ATAATTAGGCTAGAAAAATCTCACTCACATGTAATCTTAAAAAAATGATATGATAGTTCTTACAAGTAGC +GATTGAGTTTTAAATGGATTCTATTAATTACCGGGGAACTTAACAATTCGTTCTGATCTACAGACATTGG +TTAATAAATCATCTTATTTTGCCAATATATTAAAATGTGGAAACTCCACTAATAATATTACATTGTGCGA +CTTTCAAGATGATGTGATATATAGGGTTATACAGTTTTAACAATTATATAATAGAGATAGAAAGTACAAA +AGATGTAGAATCAATGATATGGCACGCTAAACAGTTGGGTGTGGAATCATTGCTAAAAGAATGTCAAAAT +TATTTGCTTAGAATATTACGTATATAATTGTTTAGAAATTTATAGAATAACTAATATTAATACATTATCG +TATATCTACAACGATATAAGAAACTTCATATTGGATAATATTACTATTAATATATAAGGATCCAGATTTT +ATATATTTGCCTAAATACATTATTATAGATTTACTAGGACAATCACCTAAATGTTTTTAACGAAGATAAT +GTGGTAAAGATTATATACACTTATATATCTTCCGATATCTACAAGGATATTCCATATCATCATTGTGTAA +ACTAAATAACGTTTTCTATGGCATTTAATAAGGACATTGGATATGTGGAAAAGTGATGTATGGAAGTTAG +TACATTATCAACTTCTCCTTATTGATTGAAAATGAAAATATAAATAGTTTTTATGTATAGCGGTATCTAC +CCTATAGTTTTATTGCTTACTACTAACATGGATTCAGATACAGATACAGATACAGATACAGATACAGATA +CAGATACAGATACAGATGTAGAAGATATCATGAATGAAATAGATAGAGAGAAAGAAGAAATACTAAAAAA +TGTAGAAATTGAAAATAATAAAAACATTAACAAGAATCATCCCAGTGAATATATTAGAGAAGCACTTGTT +ATTAATACCAGTAGTAATAGTGATTCCATTGATAAAGAAGTTATAGAATATATCAGTCACGATGTAGGAA +TATAGATCATATCTACTAATTTTTATAATCGATACAAAACATAAAAACAACTCGTTATTACATAGCAGGT +ATGGAATCCTTCAAGTATTGTTTTGATAACGATGGTAAGAAATGGATTATCGGAAATACTTTATATTCTG +GTAATTCAATACTCTATAAGGTCAGAAAAAATTTCACTAGTTCGTTCTACAATTACGTAATGAAGATAGA +TCATAAATCACACAAGCCATTGTTGTCCGAAATACGATTCTATATATCTGTATTGGATCCTTTGACTATC +AACAACTGGACACGAGAACGTGGTATAAAGTATTTGGCTATTCCAGATCTGTATGGAATTGGAGAAACCG +ATGATTATATGTTCTTCATTATAAAGAATTTGGGAAGAGTATTCGCCCCAAAGGATAGTGAATCAGTTTT +CGAAGCATGTGTCACTATGATAAACACGTTAGAGTTTATACACTCTCAAGGATTTACTCATGGAAAAATA +GAACCGATGAATATACTGATTAGAAATAAACGTATTTCACTAATTGACTATTCTAGAACTAACAAACTAT +ACAAAAGTGGAACACATATAGATTACAACGAGGACATGATAACTTCAGGAAATATCAATTATATGTGTGT +AGACAATCATCTTGGAGCAACAGTTTCAAGACGAGGAGATTTAGAAATGTTGGGATATTGCATGATAGAA +TGGTTCGGTGGTAAACTTCCATGGAAAAACGAAAGTAGTATAAAAGTAATAAAACAAAAAAAAGAATATA +AACAATTTATAGCTACTTTTTTTGAGGACTGTTTTCCTGAAGGAAATGAACCTCTGGAATTAGTTAGATA +TATAGAATTAGTATACATGTTAGATTATTCTCAAACTCCTAATTATGACAGACTACGTAGACTGTTTATA +CAAGATTGAAATTATATTCTTTTTTTTATAGAGTGTGGGGGTAGTGTTACGGATATCTAATATTAATATT +AGACTATCTCTATCGCGCTACACGACCAATATCGATTACTATGGATATCTTCAGGGAAATCGCATCTTCT +ATGAAAGGAAAGAATGTATTCATTTCTCCAGCGTCAATCTCGTCAGTATTGACAATACTGTATTATGGAG +CTAATGGATCCACTGCTGAACAGCTATCAAAATATGTAGAAAAGGAGGAGAACATGGATAAGGTTAGCGC +TCAGAATATCTCATTCAAATCCATGAATAAAGTATATGGGCGATATTCTGCCGTGTTTAAAGATTCCTTT +TTGGGAAAAATTGGCGATAAGTTTCAAACTGTTGACTTCACTGATTGTCGCACTATAGATGCAATCAATA +AGTGTGTAGATATCTTTACTGAGGGAAAAATCAATCCACTATTGGATGAACCATTGTCTCCTGATACCTG +TCTCCTAGCAATTAGTGCCGTATACTTTAAAGCAAAATGGTTGATGCCATTCGAAAAGGAATTTACCAGT +GATTATCCCTTTTACGTATCTCCAACGGAAATGGTAGATGTAAGTATGATGTCTATTTACGGCGAGCCAT +TTAATCACGCATCTGTAAAAGAATCATTCGGTAACTTTTCAATCATAGAACTGCCATATGTTGGAGATAC +TAGTATGATGGTCATTCTTCCAAACAAGATTGATGGATTAGAATCCATAGAACAAAATCTAACAGATACA +AATTTTAAGAAATGGTGTAACTCTCTGAAAGCTACGTTTATCGATGTGCACATTCCTAAGTTTAAGGTAA +TAGGTTCGTATAATCTTGTGGATACGCTAATAAAGTTGGGACTGACAGATGTGTTCTATTCAACTGGTGA +TTATATCAATATGTGTAATTCAGATGTGAGTGTTGACGCTATGATTCACAAAACGTATATAGATGTCAAT +GAAGAGTATACAGAAGCAGCTGCAGCAACTTCTGTACTAGTGGCAGACTGTGCATCAACAGTTACAAATG +AGTTCTGTGCAGATCATCCGTTCATCTATGTGATTAGACATGTCGATGGTAAAATTCTTTTCGTTGGTAG +ATATTGCTCTCCAACAACTAATTAAGCACATTCTTAATATTAGAATATTATATAGTTAAGATTTTTACTA +ACAGGTTAACATTTTTTTTTAAAAATAGAAAAAACATGTGGTATTAGTGCAGGTCGTTATTCTTCCAATT +GCAATTGGTAAGATGACGGCCAACTTTAGTACCCACGTCTTTTCACCACAACACTGTGGATGTGACAGAC +TGACCAGTATTGATGACGTCAGACAATGTTTGACTGAATATATTTATTGGTCGTCGTATGCATACCGCAA +CAGGCAATGCGCTGGACAACTGTATGACACACTCCTCTCTTTTAAAGATGATGCGGAATCAGTGTTCATC +GACGTTCGTGAGCTGGTAAAAAATATGCCGTGGGATAATGTTAAGGATTGTACAGAGATCATCCGTTGTT +ATATACCGGATGAGCAAAAAACCATCAGAGAGATTTCGGCCATCATTGGACTTTGTGCATATGCTGCTAC +TTACTGGGGAGGTGAAGACCATCCCACTAGTAACAGTCTGAACGCATTGTTTGTGATGCTTGAGATGCTC +AATTACATGGATTATACCATCATATTCTGGCGTATGAATTGATGAGTTACAGCTTGACATTTCTTCTTTC +CTCCCTCTTCTTCTACCTTTCCCAGAAACAAACTTTTTTTACCCACTATAAAATAAAATGAGTATACTAC +CTGTTATATTTCTTCCTATATTTTTTTATTCTCCATTCGTTCAGACTTTTAACGTGCCTGAATGTATCGA +CAAAGGGCAATATTTTGCATCATTCATGGAGTTAGAAAACGAGCCAGTAATCTTACCATGTCCTCAAATA +AATACGCTATCATCCGGATATAATATATTAGATATTTTATGGGAAAAACGAGGAGCGGATAATGATAGAA +TTATACAGATAGATAATGGTAGCAATATGCTAATTCTGAACCCGACACAATCAGACTCTGGTATTTATAT +ATACATTACCACGAACGAAACCTACTGTGACATGATGTCGTTAAATTTGACAATCGTGTCTGTCTCAGAA +TCAAATATAGATCTTATCTCGTATCCACAAATAGTAAATGAGAGATCTACTGGTAAAATGGTATGTCCCA +ATATTAATGCATTTATTTCTAGTAACGTAAACACAGAATTATATGGAGCGGACATCGACGCCTTAGAAAT +AAGAGACTTAAACAACGGACACCTGGAATTATTACCATAGAAGATGTTAGAAAAAATGATGCTGGTTATT +ATACATGTGTTTTAGAATATATATATATATATATATATATATATATATATATATATATATATATGGGCAA +AACATATAACGTAACCAGAATTATAAAATTAGAGGTACGGGATAGAATAATACCTCCTACTATGAAATTA +CCAGAAGGAGTAGTAACTTCAATAGGTAGTAATTTGACTATTGCATGTAGAGTATCGTTGAGACTTCCCA +CAACGGACACCGACGTCTTTTGGATAAGTAATGGTATATGTATTACGAAGAAGAAGACGAGGACGGAGAC +GGTAGAATAAGTGTAGCAAATAAAATCTATATGACCGATAAGAGACGTGTTATTACATCCTGGTTAAACA +TTAATCCTGTCAAGGAAGAAGATGCTACAACGTTTACGTGTATGGCGTTTACTATTCCTAGCATCAGCAA +AACAGTTACTGTTAGTAAACGTGAATGTATGTTGTTACATTTCCATATCAATTGAGTTTATAAGAATTTT +TTATACATTATCTTCCAACAAACAATTGACGAACGTATTGCTATGATTAACTCCCACAATACTATATATA +TTATTAATCATTAACTTGCAGACTATACCTAGTAGTGCTATTTTGACATACTCATGTTCTTGTGTAATCG +CAGTATCTATATTATTAAAGTACGTAAATCTAGCTATAGTTTTATTATTTAATTTTAGATAATATACTGT +CTCCGTATTTTTAAAAAATTACCACATCCTTTATTAAATCATGAATGGGAATTTCTGTGTCATCGTTAGT +ATATTGTGAACAACAAGAGCAGATATCTATAGGAAAGGGTGGAATGCGATACATTGATCTATGTAGTTTT +AAAACATACGCGAACTTTGAAGAATTTATATAAATCATCTCACGAGATATTGCTCTCTGTCATATTCATA +CACCTGTATAAACTTTCTAGACATCTTACAATGTGTTATTTTATGATCATATTTACATATTTACTGGTAT +ATCAAAGATGTTAGATTAGTTAATGGGAATCGTCTATAATAATGAATATTAAACAATTATAGGAGGAGTT +TATACCTACAAAAACATCATAAAAATGAGTCATCGTCCGATTTATGTTTTAAATATACTAACATTACTAC +CTTCAGAAATTATATACGAAATATTATACATGCTGACAATTAACGATCTTTATAATATATAGTATCCACC +TACCAAAGTATAATTGTATTTTTCTCATGTGATGTGTGTAAAAAACTGATATTATATAATTATCTTAGTA +CCTATGATGAAGATGAAGATGAAGATGAAGATGATGGTCCGTATATATTTTGTATCATTATCGTTATTGC +TATTCCATAGTTACGCCATAGACATCGAAAATGAAATCACCGAATTCTTCAATAAAATGAGAGATACTCT +ACCAGCTAAAGACTCTAAATGGTTGAATCCAGTATGTATGTTTGGAGGCACAATGAATGATATGGCCGCT +CTAGGAGAGCCATTCAGTGCAAAGTGTCCTCCTATTGAAGACAGTCTTTTATCGCATAGATATAAAGACT +ATGTGGTTAAATGGGAAAGGCTAGAAAAGAATAGACGGCGACAGGTTTCTAATAAACGTGTTAAACATGG +TGATTTATGGATAGCCAACTATACATCTAAATTCAGTAACCGTAGGTATTTATGTACCGTAACCACAAAG +AATGGTGACTGTGTTCAGGGTGTAGTTAGATCTCATGTGTGGAAACCTTCTTCATGCATTCCAAAAACAT +ATGAACTAGGTACTTATGATAAGTATGGCATAGACTTATACTGTGGAATTCTTTATGCGAACCATTATAA +TAATATAACTTGGTATAAAGATAATAAGGAAATTAATATCGACGATTTTAAGTATTCACAAGCGGGAAAG +GAATTAATTATTCATAATCCAGAGTTAGAAGATAGTGGAAGATACGACTGTTACGTTCATTACGACGACG +TTAGAATCAAGAATGATATCGTAGTATCAAGATGTAAAATACTTACGGTTATACCGTCACAAGACCACAG +GTTTAAACTAATACTAGATCCGAAAATCAACGTAACGATAGGAGAACCTGCCAATATAACATGCAGTGCT +GTGTCAACGTCATTATTTGTCGACGATGTACTGATTGAATGGGAAAATCCATCCGGATGGATTATAGGAT +TAGATTTTGGTGTATACTCTATTTTAACTAGTAGAGGCGGTATCACCGAGGCGACTTTGTATTTTGAAAA +TGTTACTGAAGAATATATAGGCAATACATATACATGTCGTGGACACAACTATTATTTTGATAAAACTCTT +ACAACTACAGTAGTATTGGAGTAAATACACAATGCATTTTTATATACATTACTGAATTATTATTATTAAT +TATATCGTATTTGTGCTATAGAATGGATGAAGATACGCGACTATCTAGGTATTTGTATCTCACCGATAGA +GAACATATAAATGTAGACTCTATTAAACAGTTGTGTAAAATATCAGATCCTAATGCATGTTATAGATGTG +GATGTACGGCTTTACATGAGTACTTTTATAATTATAGATCAGTCAACGGAAAATACAAGTATAGATACAA +CGGTTACTATCAATATTATTCATCTAGCGATTATGAAAATTATAATGAATATTATTATGATGATTATGAT +AGAACTGGTATGAACAGTGAGAGTGATAATATATCAATCAAAACAGAATACGAGAATGAATATGAATTCT +ATGATGAAACACAAGATCAAAGTACACAACTAGTAGATTACGACATTAAACTCAAAACCAATGAGGATGA +TTTTGTTGATGAATTCTATGGTTATGATAGATCAGTGGGTGTCCATGATTATATAGATGTATCAATTAAT +AAAGTAGTATATGGAAGAGAGTCTCACGTAAGATGGTGGGATATATGGCAAGAACATAATGATGGCGTAT +ACAGTATAGGAAAGGAGTGCATAGATAATATATACGAAGACAGACATACCGTAGACGAATTCTACAAGAT +AGACAGCGTATCAGATGTAGATGACGCAGAACATATATCTCAGATAACTAATGATGTATCTACACAAACA +TGGGAAAAGAAATCAGAGTTAGATAGATACATGGAAATGTATCCTCGTCATAGATATGGTAAGCATTCTG +TCTTTAAGGGATTTTCTGACAAAGTTAGAAAAAATGATTTAGACATGAACGTGGTAAAAGAATTACTTTC +TAACGGTGCATCTCTAACAATCAAGGATAGCAGTAATAAGGATCCAATTGCTGTTTATTTTAGAAGAACA +ATAATGAATTTAGAAATGATTGATATCATTAACAAACATACAACTATCTATGAACGCAGGTATATAGTAC +ACTCCTATCTAAAAAATTATAGAAATTTCGATTATCCATTTTTCAGAAAGTTAGTTTTGACTAATAAACA +TTGTCTCAACAATTATTGTAATATAAGCGACGGCAAATATGGAACACCACTACATATATTAGCATCTAAT +AAAAAAATAATAACTCCTAATTACATGAAGTTATTAGTGTATAACGGAAATGATATAAACGCACGAGGTG +AAGATACACAAATGCGAACTCCATTACACAAATATTTGTGTAAATTTGTATATCATAATATTGAATATGG +TATCCGATACTATAATGAAAAGATTATAGACGCATTTATAGAGTTAGGAGCCGATCTAACTATTCCAAAT +GACGATGGAATGATACCAGTAGTTTACTGTATACACTCAAATGCCGAATATGGTTATAACAATATTACTA +ACATAAAGATAATACGTAAACTACTTAATCTTAGTAGACATGCGTCACATAATCTATTTAGAGATCGAGT +CATGCACGATTATATAAGTAATACATATATTGATCTTGAGTGTTTAGATATCATTAGATCACTTGATGGG +TACGATATTAATTGTTACTTTGAAGGACGTACACCACTTCATTGCGCTATACAATATAACTTCACTCAGA +TTGCTGAGTACTTATTAGATCGAGGAGCTGATATATCATTAAAGACAGACGATGGTAAAACTGTATTTGA +TTTATCGTTATGTAGTTACATTCCTCTTAAATGGACTAGCTTTTTGATTAGTCGTCTACCGCCTAAAAGT +GTCATATGCTCACTGACTAACCATATAATAGATTATGTTCTTACGAACAATAGACGTATTATTTGGCAGA +GTCAAATGATTAATAAGTACGTACTGTTACTGGACCCATCCTTTTATTATAGATTCAGAAATGTTATCGA +AAACAAATTAGACCAATACAATAATCGTTATAATATGTTCGAACACGATAGGGACGTTAATGAAAAGTAT +GGCAAAGTCTTACATGACCTCGATACATATATCAAGGATGTACAAGTATTAAAATCTACTTCCATCACTA +ATAATATAACACTATACGACACTATTATAAATAATAAGTCAGAGTTTCCTATACGTCGTGTAAACGACAA +ACAATTAATTAATCTCATAAAATCCAATACATATCATAATCTTATCGAAAAAGTTATTAAAAATACATTA +GAGAAATATACTTTAACTAATATAGTCCTCGAGTATATGATCTCATCTCGATCTCAATCATCTTATTTGA +GTCGTATTCCTAATGAGATATTACTCGAAATATTATATAAACTCGACATGTACGATTTACGTAATCTATA +TACAAGATATATGAGAGAGAATGATATCACAGAGTATCATATAGAGAATACGAGGTCTGTTTCTACACAG +ACATGAATAATGAATACACATACAACGTTTTTTTTAATCTTAGATATAACACTAATTACATCAAGATTAT +ATATTGAAATCGTAATTTGAGTTGTCTGATCATCATGGATATCGAAAATAATATACGTAACATTAGCAAT +CTTTTAGATGATTGATATATTATTATGCGATGTAATCATAACTATCGGAGATGTAGAAATTAAAGCGCAT +AAAACTATTTTGGTTGCCGGATCTACGTATTTTAAAACAATGTTCACAACATCTATGATAGCGAGAGATC +TAGCAACTAGAGTAAATATACAGATGTTCGATAAAGATGCCGTCAAAAATATTGTACAGTACTTATACAA +TAGGTATATAAGTTCTATGAATGTGATAGACATATTAAAATGCACCGACTAAGAACGTAAAACGAACTAT +AGAATGTTATACAATGGGTGATGATAAGTAGAAGATGTTACCCGATATACCCATAGCATTATCTAGTTAT +GGCATGTGTGTATTAGATCAATACATATACATTATAAGCGGTCGTACCCAACACTGATTATACATCGGTA +CATACAGTAAATAGCATAGATATGGAGGAGGATACAAATATTTCAAATAAAGTTATGAGATACGCGCTGT +CAATAATATATGGAAGACATTACCTAACTTCTGAACTGGAACTATAAATCCAGGCTCTCGCATAAAGATG +AATATATATGTTGTATGCGACATCAAAGATGAAAAAATGTTAAGACTTATATATTTAGATATAACACGAA +TATGTATGACGGATGGGAATTGGTAACGATGACAGAAAGCAGATTGTCAGCTCTGCATACTATTCTTCAT +GACAATACCATAATGATGTTACATTGTTATGAAGCGTATATGTTACAAGATACATTTAATGTGCTTACGG +AACATATATTTAGAAACATCTACTAACGATTTTTTATGCTTGTATTATTAATGGTATGTAATATGATTTA +ATTGATTGTGTACACGATACCAATTTGTCGAGTATGAATACGGAGTACAAACATAAACTGAAGTTTAACA +TTATTTATTTATGATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATA +TACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTA +TATACATTATATACATTATATATCGTTATTGTTTGGTCTATGCCATGGATATCTTTAAAGAACTAATCTT +AAAACATACGGATGAAAATGTTTTGATTTCTCCAGTTTCCATTTTATCTACTTTATCTATTCTGAATCAT +GGAGCAGCTGGTTCTACAGCTGAACAACTATCAAAATATATAGAGAATATGAATGAGAATACACCCGATG +ATAAGAAGGATGACAATAATGACATGGACGTAGATATTCCGTATTGCGCGACACTAGCTACCGCAAATAA +AATATACGGTAGTGATAGTATCGAGTTCCATGCCTCATTCCTACAAAAAATAAAAGACGATTTTCAAACT +GTAAACTTTAATAATGCGAACCAAACAAAGGAACTAATCAACGAATGGGTTAAGACAATGACAAATGGTA +AAATTAATTCCTTATTGACTAGTCCGCTATCCATTAATACTCGTATGATAGTTATTAGCGCCGTCCATTT +TAAAGCAATGTGGAAATATCCATTTTCTAAACATCTTACATATACAGACAAGTTTTATATTTCTAAGAAT +ATAGTTACCAGTGTTGATATGATGGTGGGTACCGAGAATGACTTGCAATATGTACATATTAATGAATTAT +TCGGAGGATTCTCTATTATCGATATTCCATACGAGGGAAACTCTAGTATGGTGATTATACTGCCGGACGA +CATAGAAGGTATATATAACATAGAAAAAAATATAACAGATGAAAAATTTAAAAAATGGTGTGGTATGTTA +TCTACTAAAAGTATAGACTTGTATATGCCAAAGTTTAAAGTGGAAATGACGGAACCGTATAATCTGGTAC +CGATTCTAGAAAATTTAGGACTTACTAATATATTTGGATATTATGCAGATTTTAGTAAGATGTGTAATGA +AACTATCACTGTAGAAAAATTTCTACATACGACGTTTATAGATGTTAATGAGGAGTATACAGAAGTATCG +GCCGTTACAGGAGTATTCATGACTAACTTTTCGATGGTATATCGTATGAAGGTCTACATAAACCATCCAT +TCATATACATGATTAAAGATAACACCGGACATACACTTTTTATAGGGAAATACTGCTATCCGCAATAAAT +ATAAACAATAGACTTTTATCACGTTATCTCATGTATAAAATATTACAAATAGTATAGCATAAACTAAAGT +CGATACATACATTAAAACTTAAATAATAATGTAATTTACAATTAATAGTATAAACTAAAAAAATTAAAAA +ATTAAAAACAATATCATTATTATAAGTAATATCAAAATGACGATATACGGATTAATAGCGTATCTTATAT +TCGTGACTTCATCCATCGCTAGTCCACTTTACATTCCCGTTATTCCGCCCATTTCGGAAGATAAATCGTT +CAATAGTGTAGAGGTATTAGTTTCTTTGTTTCCCGATGACCAAAAAGACTATACAGTAACTTCTCAGTTC +AATAACTACACTATCGGTACCAAAGACTGGACTATCAACGTACTATCCACACCTGATGGTCTGGACATAC +CATTGACTAATATAACTTATTGGTCACGGTTTACTATAGGTCGTGCATTGTTCAAATCAGAGTCTGAGGA +TATTTTCCAAAAGAAAATGAGTATTCTAGGTGTTTCTATAGAATGTAAGAAGCCGTCGACATTACTTACT +TTTTTAACCGTGCGTAAAATGACTCGAGTATTTAATAGATTTCCAGATATGGCTTATTATCGAGGAGACT +GTCTAGAAGCCGTTTATGTAACAATGACTTATAAAAATACTAAAACTGGAGAGACTGATTACACGTACCT +CTCTAATGGGGGGTTGCCTGCATACTATCGTAATGGGGTCGATGGTTGATTATTGATTAGTATATTCCTT +ATATTCCTTATTCTTTTTATTCACACAAAAAGAACATTTTTATAAACATGAAACCACTGTCTAAATGTAA +TTATGATCTTGATTTATAGATGATGATCAGCCTTCAGAGGATTTTGACCAGTATGTTTAATATGAAAAAA +AACATAACTATTAAGCGCTATTGCGCTATTGTGCTTAATTATTTTGCTCTATAAACTGAATATATAGCCA +CAATTATTGACGGGCTTGTTTGTGACCGACAATCATGAATTTTCAGAAATTATCTCTGGCTATATATCTT +ACGGTGACATGTTCGTGGTGTTATGAAACATGTATGAGAAAAACTGCGTTGTATCATGACATTCAATTGG +AGCATGTAGAAGACAATAAAGATAGTGTAGCATCGCTACCGTACAAGTATCTACAAGTAGTCAAACAAAG +AGAACGTAGTAGATTGTTGGCTACATTTAATTGGACGGATATAGCTGAGGGTGTTAGAAATGAGTTCATT +AAAATATGTGATATCAACGGAACATATCTATATAATTATACTATTGCTGTTAGTATAATTATTGATTCCA +CGGAAGAACTACCAACAGTTACTCCAATTACAACATATGAACCTTCTATATATAATTATACTATCGATTA +TAGCACTGTTATTACTACTGAAGAACTACAAGTGACTCCAACATATGCACCTGTAACAACTCCTCTTCCA +ACATCAGCAGTTCCTTATGATCAACGATCGAATAACAATGTAAGTACTATATCTATTCAGGTACTGAGTA +AAATATTGGGAGTCAATGAAACAGAATTAACTAATTATCTTATTATGCATAAAAATGACACTGTTGACAA +TAACACCATGGTTGATGATGAGACATCTAACAATAACACATTACATGGTAATATAGGATTTTTGGAAATA +AATAATTGTTATAATGTTTCTGTGTCAGATGCTAGTTTTAGAATAACATTAGTAAACGATACTTCTGAAG +AAATTTTGCTAATGCTAACAGGAACTAGTTCATCCGACACCTTCATATCTTCCACCAATATCACTGAATG +TTTGAAAACATTAATCAATAATGTGTCGATTAATGATGTACTTATAACACAAAATATGAATGTAACATCT +AATTGTGATAAATGCTCAATGAATTTGATGGCATCCGTTATTCCTGCAGTTAATGAATTTAACAATACGT +TGATGAAAATTGGTGTAAAAGATGATGAAAACAATACGGTATATAAATATTATAATTGTAAACTAACTAC +AAATTCTACATGTGATGAGTTAATCAATTTAGATGAAGTCATTAACAACATAACTCTGACAAATATTATA +CACAATAGTGTTTCGACAACTAACAGCAGAAAAAGACGAGATCTGAATGATGAGTTTGAATTTTCCACTT +CCAAGGAATTAGATTGTCTTTACGAATCATATGGTGTAAACGATGATATAAGTCATTGTTTTGCATCACC +TAGACGTAGACGATCTGACGACAAAAAGGAGTACATGGACATGAAATTATTCGACCACGCGAAAAAAGAT +TTAGGAATAGACAGTGTTATTCCTAGAGGTACAACCCATTTCCAAGTAGGTGCATCTGGTGCAAGTGGTG +GTGTTGTAGGAGATAGTTTCCCATTTCAAAATGTTAAATCGCGTGCCAGTCTATTGGCGGAAAAAATAAT +GCCTAGAGTACCTATTACTGCTACCGAAGCTGATCTATATGCAACTGTAAATAGACAACCCAAGTTACCA +GCAGGTGTTAAAAGTACTCCGTTTACAGAGGCGCTTGTGTCTACGATAAACCAAAAGCTTTCTAATGTTA +GAGAGGTAACTTATGCTTCGCTCAATCTGCCAGGATCAAGTGGCTATGTTCATAGACCATCTGATTCTGT +TATTTATAGCAGTATAAGACGGTCACGTTTACCTAGTGATAGCGATAGTGATTATGAGGATATACAAACT +GTTGTTAAGGAATATAATGAAAGATATGGTAGATCAGTCAGTAGAACACAGTCATCAAGTAGTGAAAGCG +ATTTTGAAGATATAGATACTGTTGTTAGGGAATATAGACAAAAATATGGCAATGCAATGGCAAAAGGACG +TAGTAGTTCCCCTAAACCTGATCCATTATATAGTACTGTTAAGAAAACAACTAAAAGTCTATCTACTGGT +GTAGACATAGTTACAAAACAATCAGACTATTCTCTATTACCTGACGTTAATACTGGCAGTTCTATTGTGT +CACCTCTCACCAGAAAAGGAGCTACTAGACGACGACCTAGACGCCCTACAAATGATGGTCTACAGAGTCC +AAATCCTCCTCTCCGTAATCCACTTCCTCAACATGATGATTATTCTCCTCCACAAGTACACAGACCTCCA +CCACTTCCTCCTAAACCAGTCCAAAATTCGCCACAACTTCCCCCTAGACCAGTAGGTCAATTACTACCTC +CTCCTATAGATCAACCAGATAAAGGATTTAGTAAGTTTGTATCACCTAGACGGTGTAGAAGAGCAAGCTC +TGGAGTCATATGTGGTATGATACAATCAAAACCAAACGATGATACCTATTCACTTCTTCAACGATCAAAA +ATTGAACCAGAATATGTGGAGGTTGGTAATGGTATACCCAAGAACAATGTTCCTGTAATAGGTAATAAAC +ATAGTAAAAAATATACATCGACGATGTCAAAAATATCAACAAAATTTGATAAATCTACGGCATTTGGAGC +AGCAATGTTACTAACTGGTCAGCAGGCCATTAGCCAACAGACTAGATCAACTACGTTGAGTAGAAAAGAT +CAGATGAGTAAGGAAGAAAAGATATTCGAAGCAGTTACAATGAGTCTATCAACTATAGGTTCAACGTTGA +CGTCTGCAGGTATGACGGGTGGTCCAAAACTAATGATTGCAGGAATGGCTATAACGGCTATAACTGGTAT +AATAGATACGATAAAAGATATATATTACATGTTTTCAGGACAGGAGAGGCCAGTAGATCCTGTTATTAAA +TTATTTAATAAGTACACTGGCTTAATGTCCGATAATAATAAAATGGGTGTAAGAAAATGTTTGACACCCG +GTGACGACACACTTATTTATATCGCATACAGAAACGATACCAGTTTTAAACAGAATACGGATGCGATGGC +TTTGTATTTCTTAGATGTTATCGATTCAGAGATCCTATATCTAAACACATCAAATTTAGTTCTAGAGTAT +CAACTAAAGGTGGCTTGCCCCATAGGAACATTAAGATCTGTAGATGTGGACATAACTGCGTATACAATAT +TATATGATACAGCGGATAATATTAAGAAATACAAGTTTATCAGAATGGCAACGCTACTATCCAAACATCC +AGTTATTAGATTGACATGTGGTTTAGCAGCAACATTGGTGATTAAACCGTACGAGGTACCCATCAGTGAT +ATGCAACTACTAAAAATGGCGACGCCTGGTGAACCAGAATCCACTAAATCTATACCATCCGATGTCTGTG +ATAGGTATCCTCTAAAGAAATTCTATCTTTTAGCTGGTGGTTGTCCCTATGATACATCTCAAACTTTTAT +TGTACATACTACTTGCAGTATTCTACTAAGAACAGCTACACGGGATCAGTTTAGAAACAGATGGGTGTTA +CAAAATCCATTTAGACAAGAAGGGACATATAAGCAACTGTTTACCTTTAGCAAATACGATTTTAACGACA +CCATAATCGATCCTAATGGTGTGGTGGGTCATGCTAGCTTTTGTACCAATAGAAGCAGCAACCAATGTTT +CTGGTCCGAACCTATGATATTGGAAGATGTATCATCGTGTAGTTCTAGAACTAGAAAAATATACGTAAAA +CTGGGAATATTTAATGCTGAAGGTTTTAATAGTTTTGTACTAAATTGTCCAACTGGGTCTACACCTACAT +ACATCAAACATAAAAATGCGGACAGTAACAATGTTATCATAGAGCTACCTGTAGGTGATTACGGCACAGC +CAAATTGTATTCAGCAACAAAACCATCGAGGATAGCTGTGTTCTGCACACATAACTATGATAAACGATTC +AAATCAGATATTATAGTTCTAATGTTTAATAAAAACAGCGGTATTCCATTTTGGAGCATGTACACAGGAA +GTGTAACTAGTAAAAATAGAATGTTTGCCACATTGGCTAGAGGAATGCCGTTTAGATCAACGTATTGCGA +TAACAGACGACGATCAGGTTGTTATTATGCAGGAATACCATTTCATGAAGATAGTGTAGAAACAGATATA +CATTATGGACCAGAAATAATGTTAAAGGAAACATATGACATAAACAGTATTGACCCACGAGTTATAACAA +AGTCAAAGACCCATTTTCCTGCTCCATTGAGTGTAAAATTCATGGTTGACAATTTAGGAAATGGATATGA +CAACCCTAATTCATTTTGGGAAGATGCTAAAACTAAGAAACGGACATATAGTGCAATGACGATAAAAGTC +CTACCATGTACAGTGAGAAATAAAAATATAGACTTTGGATATAACTATGGAGATATTATTTCTAATATGG +TTTATCTACAATCTACTAGTCAGGATTATGGAGATGGTACCAAATATACATTTAAATCCGTAACTAGATC +AGATCATGAGTGTGAATCTAGCTTAGATCTAACGTCTAAGGAAGTAACTGTGACATGTCCTGCGTTTAGT +ATACCAAGAAATATATCAACATATGAAGGTCTATGCTTTAGTGTTACTACATCTAAAGATCATTGTGCTA +CAGGTATTGGTTGGTTAAAATCTAGTGGTTATGGGAAGGAAGATGCTGATAAACCACGTGCTTGTTTTCA +TCATTGGAATTATTACACACTGTCGTTGGATTATTACTGTTCATACGAAGATATTTGGAGAAGCACCTGG +CCTGACTATGATCCATGTAAGTCATATATCCATATAGAGTATAGAGATACATGGATAGAATCTAATGTGT +TACAGCAACCTCCTTACACATTCGAATTCATTCATGACAATTCTAACGAATATGTGGATAAAGAAATTAG +TAACAAATTAAATGATCTGTACAATGAATACAAGAAGATTATGGAATATAGCGACGGATCATTGCCGGCG +TCTATAAACAGATTAGCAAAGGCATTGACTTCAGAGGGTAGAGAAATAGCAAGTGTTAATATAGATGGTA +ATCTGTTAGATATCGCATATCAAGCAGATAAGGAAAAGATGGCCGACATACAGACAAGAATAAATGATAT +TATTAGAGATTTGTTTATACACACTCTATCAGACAAAGATATAAAAGACATTATAGAATCCGAAGAAGGT +AAGAGATGTTGTATAATAGATGTTAAGAACAATCTTGTTAAAAAGTACTATTCTATTGATAATTATCTAT +GTGATACTTTAGATGATTATATATACACCTCTGTAGAATATAACAAATCCTATGTGTTAGTAAACGATAC +TTATATAAGCTATGACTATCTTGAATCATCAGGTGTAGTTGTTCTATCATGTTATGAAATGACTATAATC +TCCTTGGATACAAAAGACGCCAAAGATGCTATAGAAGATGTGATAGTAGCAAGTGCGGTAGCCGAAGCAT +TGAATGACATGTTTAAGGAATTTGATAAAAACGTAAGTGCTATTATAATAAAAGAAGAAGATAATTATCT +AAACAGTTCGCCCGATATCTACCATATAATATATATCATAGGTGGCACTATTCTGCTACTGTTAGTCATT +ATTTTAATATTGGCAATTTATATAGCGCGCAATAAATACAGAACCAGGAAATATGAAATAATGAAATATG +ACAATATGAGCATTAAATCTGAGCATCATGATAGTCTTGAAACAGTGTCTATGGAAATTATTGATAATCG +GTACTAATAAAATAGTTTAACTCTTTTAGAACCAGTTTGGTACTGTAATTTCAGTTCATTACTCGTTGAG +AATATTGATGATTTTTTTTAAATGAGTATCGGTAGTTACATATTACCATATCATCCATTATATAATCGAT +GATGCATGTATTAGAATACTTTCCGAATAAGTCTTCTAAATATTGTATTAATTATGAAAAACTATGCTAT +GTGAGTATGATTCAAAGATGTTTAATGATACGATACTAGATTTTATCTCTAGCGAGATTGTTTAGAATCA +TTTATCATAACTATGTTTAATAAATTCATCAACGAATATCGATAAAGACCTCTTGTAATTCGAGTATAGG +AAGTAGTATTACCATATCAACTTCCGAGTTAACAATTACTCTAAAACATGAGGATTGTACTCCTGTCTTT +ATTGGAGATCACTATTTAGTCGTTGATAAACTAGTAACCTCAGGTTTCTTTACAAACGATAAAGTACAAC +ATCAAGACCTCACAACACAGTGCAAGATTAATCTAGAAATCAAATGTAATTCTGGAGGAGAATCTAGACA +ACTAACACCCACGGCGAAGTATACTTTATGCCTCATTCAGAAACGGTAACTGTAGTAGGAGACTGTCTCT +CTAATCTCGATGTATATATAATATATACCAATACGGACGCGATATATTCCGACATGAATGGCGTCGCTTA +TCATATGTTATATCCTAAATGTTGATCATATTCCACAAATGATTGTGAACGAGATTAAATCATCTAACAA +ATAATTAGTTTTTTATGACATTAACATATAATAAATAAATTAATCATTATTGACTTAACGATGACGAAAG +TTATCATTATCTTAGGATTCTTGATTATTAATACAAATTCGTTGTGTCTATGAAATGTGAACAAGGTGTC +TCATATTATAATGCACAAGAATTAAAGTGTTGTAAACTATCTAGCCAGGAACATATTCAGATTATCGATG +TGATAAATACAGCGATACCATCTGTGGACATTGTCCAAGTGACACATTCACGTCAATATATAATCGTTCT +CCTCGGTGTCATAGTTGTAGAGGTCACACCTTGTACACCTACCACAAATAGAATATGTCATTGTGACTCG +AATAGTTATCGTCTCCTTAAAGCTTCTGATGGTAACTGTGTTACATGTGCTCCTAAAACAAAATATGGTC +GTGTGTACGGAAAGAAAGGAGAAAATGATATGGAATACCATTTGTAAGAAATGTCGGAAGGGTACTTATT +CAGATATTGTATCTGACTCTGATCAATGTAAACCTATGACAAGATAAGACTTACTCGCATCTACTGGATA +GACATAAATATCCTCCTCGTAATAATGAAATATAATATACACTAATTATTAATATCAATCGAGTATTAAC +ATATAAGTTATTTTTAAACCCCTTTTGGGTTCCGTCCTAAACGGCGTTTCGGTCTGTGTCGCCACCATGG +TCACACCGAGCCTCTGCGTGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCA +GCGTGTACATACGAATGGCATTTCTAAGAAAAGTCTACGGTATCCTTTCTACAATTTCCTTTAACAACGG +CAACAGCTGCAGTATTTTTATACTTTGAATGCATCGGACATTTATACAAGGGAGTCCTGTTCTAATATTG +GCATCAATGTTCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATGAACATCCCCTGAATC +TGTACATACTTTGTGGATTTACACTGTTAGAATCTCTAACGCTGGCCTCTGTTGTTACTTTCTATGATGC +ACGTATCGTTATGCAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGCTCTGACTACATATACTCTACAA +TCAAAGAGAGATTTCAGTAAACTTGTAACAGGATTGTTTGCTGCTTTCTGGATTTTAATTTTGTCAGGAG +TCTTGAGGATAAAGTTTAAAATAGAATTAATAAAGAACATATAGGTCATTTTTTAAACATGGATAGAAAC +CAAGGTTGTTAGTTAATAATATACAAGATATTTTTTCTCACTCTGATCCATGTAAACCAAGGACGAGAGA +CACTCTCATTCCTCATTCACGACACCATTAAAAATGGAAATTAAAGCCCTCTATTAAGCACAGACGGCTA +CAGGTCTACCATCAGGTTACCTTCGTCTACCTTCACAATGGCCTCTCCTTGTGCCCAGTTCAGTCCCTGT +CATTGCCACGCTACTAAGGACTCCCTGAATACCGTGACTGACGTCAGACATTGTCTGACTGAATACATCC +TGTGGGTTTCTCATAGATGGACCCATAGAGAAAGCGCAGGGCCTCTCTACAGGCTTCTCATCTCTTTCAG +AATTGATGCAATGGAGCTATTTGGTAGCGAGTTGAAGGAGTTCTCGAATTCACTTCCGTGGGACAATATC +GACAATTGCGTGGAGATCATTAAATGTTTCATCAGAAATGACTCCATGAAAACCGCCAAAGAACTTTGTG +CAATAATTGGACTTTGTACTCAATCAGCTATTGTCACTGGAAGAGTCTTCAATGATAAGTATATCGACAT +ACTACTTATGCTGCGAAAGATTCTGAACGAGAACGACTATCTCACCCTCTTGGATCATATCCTCACTGCT +AAATACTAAATCTCCTTCATGCTCTCTCACTAATACTCTTACTCACTACACTTTTTATCATCTTATGATG +AATGATTGCCTTCATCATTTTTTCGTGGAATATAATATAGGAATAATTAGCACCAGAATAGCTATGGATA +TCTCGTTAAGAATATTCTCTATAAGAGACATAATGTAGACATAGTTATTATATCCTTCTTAGATAAGTGT +TACGCTACTGGAAAGTTTCCATCGTTATTATTACATGAAGATGATATAATTAAACCAACATTGAGATTGG +CTCTTATGTTAGCTGGATTGAATTACTGTAATAAATGCATCGAGTATAGAGGGATATAGCAATTCTCGAT +AATAGTCATGCAATATTTGAATGAGACTGATAATTTAGGTAATACAGTACTACACACATATCTTTCTAGA +TTATATATCGTTAAAAATCTGTAAGATGTATATTTCTCATAAGTATCCACTGTGTAATATTATTAATGGA +TATATAGATAACGCAATAGGGACTAATAGTATTGTAAAAGATATAATCGACTATTTACGTACATATCCAG +ATATCTATATTCCTACTAGTTTGCTGCGTAGTTGCATCATTGATATGCATGATTTATCAGGATTCAGAGA +TGAATTACTAAGTAAACTACAATCCCACAATAAGTAAGAATCAAATATCAAAAACTCACTTTTGATTTTT +CTAGTCTTAAGTAATACATATATTTATTAATAGACCTATGAAATAAAAAAAGGTAACAATGGATTCGCGT +ATAGCTATTTACGTATTAGTATCGGCATCTCTTTTGTATCTTGTTAATTGTCACAAACTAGTACATTACT +TCAATCTGAAAATAAATGGAAGTGATATAACTAATACAGCAGATATATTGCTGGACAATTATCCAATTAT +GACCTTTGATGGAAAGGATATTTATCCATCTATCTCGTTCATGGTCGGTAATAAACTTTTCCTAGATCTT +TATAAAAATATCTTTGAAGAATTTTTCAGACTATTTCGAGTATCTGTAAGTAGTCAATACGAGGAATTAG +AATATTATTATTCATGTGATTATACTAACAACCGTCCTACAATTAAACAACATTACTTTTATAACGGCGA +CGAATATACTGAAATTGATAGATCGAAAAAAGCCACTAATAAAAACAGTTGGTTAATTACTTCAGGCTTT +AGACTACAAAAATGGTTCGATAGCGAAGATTGTATAATTTATCTCAGATCTTTAGTTAGAAGAATGGAAG +ACAGTAACAAAAACAGTAAAAAAACTTAGTACTTAGATATCGAAAAAATATATTTTTGTAGACTCTTGAG +AATAGAAGGAAAACATGTACATAATTATAAAAAATGAAAATCAATGGCGAATAAGACAGTGCGATTCGCA +CCATGGAGTCGGTAGATTTCATGGCTGTCGATGAGCAGTTTCACGACGACCTCGATCTTTGGTCATTATC +TTTGGTAGATGATTATAAAAAACATGGATTAGGTGTTGACTGTTATGTTCTAGAACCAGTTGTTGACAGG +AAAATATTTGATAGATTTCTCCTTGAACCAATTTGTGATCCTGTAGATGTTCTGTATGATTATTTTAGGA +TTCATAGAGATAATATTGATCAGTATATAGTAGATAGACTGTTTGCATATATTACATATAAAGATATTAT +ATCTGCATTAGTGTCAAAGAATTATATGGAAGATATTTTCTCTATAATTATTAAGAATTGTAATTCTGTG +CAAGATCTCTTACTTTACTATCTATCTAATGCATATGTAGAAATAGACATTGTTGATCTTATGGTAGATC +ATGGGGCTGTAATATATAAAATAGAATGCTTGAATGCCTATTTTAGGGGAATATGTAAAAAGGAAAGTAG +TGTTGTTGAGTTTATTTTGAATTGTGGTATCCCAGATGAAAATGATGTTAAATTAGATCTATATAAAATA +ATTCAGTATACTAGGGGATTCCTTGTAGATGAACCCACAGTATTAGAAATTTATAAGCTTTGTATCCCAT +ATATTGAAGATATCAATCAACTAGATGCTGGTGGAAGGACCTTGCTTTATCGCGCTATCTATGCAGGTTA +TATAGATTTAGTATCATGGCTATTAGAAAATGGAGCAAATGTCAACGCAGTAATGAGTAATGGATATACA +TGTCTTGACGTGGCCGTGGATAGGGGATCTGTCATCGCCCGTAGGGAAGCACATCTTAAAATATTAGAAA +TATTGCTTAGAGAACCATTGTCTATTGACTGTATAAAATTAGCTATACTTAATAATACAATTGAAAACCA +TGATGTGATAAAGCTCTGTATCAAGTATTTTATGATGGTAGATTATTCACTTTGTAATGTGTATGCATCA +TCACTCTTTGATTATATAATTGATTGTAAACAAGAATTGGAGTACATTAGGCAGATGAAAATTCATAATA +CAACCATGTATGAGTTAATCTATAATAGAGACAAAAACAAGCATGCTTCCCATATTCTACATAGGTATTC +TAAACATCCAGTTTTGACACAGTGTATCACTAAAGGATTCAAGATTTACACAGAAGTAACCGAGCAGGTC +ACTAAAGCTCTAAACAGACGTGCTCTAATAGATGAGATAATAAACAATGTATCAACTGATGACAATCTCC +TATCAAAACTTCCATTAGAAATTAGGGATCTAATTGTTTCACAAGCTGTCATATAGAGTTCTATCCACCC +ACCTTTCTTGAAATGAGTTAATAGTCATAAGTTAGTTAAGTCATAAGTTAGTTAAGTCATAAGTTAGTTA +AGTCATAAGTTAGTTAAGTCATAAGTTAGTTAAGTCATAAGTTAGTTAAGTCATAAGTTAGTTAAGTCAT +AAGTTAGTTTATAGTCTAACACTTCTAATTTTTATACCTTGATCTTTTTCTCTAATTATGAAAAAGTAAA +TCATTATGAAGATGGATGAAATGGACGAGATTGTGCGCATCGTTAACGATAGTATGTGGTACGTACCTAA +CGCATTTATGGACGACGGTGATAATGAAGGTCACATTTCTGTCAATAATGTCTGTCATATGTATCTCGCA +TTCTTTGATGTGGATATATCATCTCATCTGTTTAAATTAGTTATTAAACACTGCGATCTGAATAAACGAC +TAAAATGTGGTAACTCTCCATTACATTGCTATACGATGAATACACGATTTAATCCATCTGTATTAAAGAT +ATTGTTACGCCACGGCATGCGTAACTTTGATAGCAAGGATAAAAAAGGACATATTCCTCTACACCACTAT +CTGATTCATTCACTATCAATCGATAACAAGATCTTTGATATACTAACGGACCCCATTGATGACTTTAGTA +AATCATCCGATCTATTGCTGTGTTATCTTAGATATAAATTCAATGGGAGCTTAAACTATTACGTTCTGTA +CAAATTATTGACTAAAGGATCTGACCCTAATTGCGTCGATGAGGATGGACTCACTTCTCTTCATTACTAC +TGTAAACACATATCCGCGTTCCACGAAAGCAATTATTACAAGTCAAAGAGTCACACTAAGATGCGAGCTG +AGAAGCGATTCATCTACGCGATAATAGATCATGGAGCAAACATTAACGCGGTTACGAAAATCGGAAATAC +GCCGTTACACACTTACCTTCAACAGTATACCAAACATAGTCCTCGTGTGGTGTATGCTCTTTTATCTCGA +GGAGCCGATACGAGGATACGTAATAATCTTAATTGTACACCCATCATGGAATACATAAAGAACGATTGTG +CAACAGGTCATATTCTCATAATGTTACTCAATTGGCACGAACAAAAATACGGGAAATTACAAAAGGAAGA +AGGACAACATCTACTTTATCTATTCATAAAACATAATCAAGGATATGGAAGTCGCTCTCTCAATATACTA +CGGTATCTACTAGATAGATTCGACATTCAGAAAGACGAATACTATAATACAATGACTCCTCTTCATACCG +CCTTCCAGAATTGCAATAACAATGTTGCCTCATACCTCGTATACATTGGATACGACATCAACCTTCCGAC +TAAAGACGATAAGACAGTATTCGACTTGGTGTTTGAAAACAGAAACATTATATACAAGGCGGATGTCGTT +AATGACATTATCCACCACAGACTGAAAGTATCTCTACCTATGATTAAATCGTTGTTCTACAAGATGTCGG +AGTTCTCTCCCTACGACGATCACTACGTAAAGAAGATAATAGCCTACTGCCTATTAAGGGACGAGTCATT +TGCGGAACTACATACTAAATTCTGTTTAAACGAGGACTATAAAAGTGTATTTATGAAAAATATATCATTC +GATAAGATAGATTCCATCATCGAAAAATGTAGTCGTGACATAAGTCTCCTCAAAGAGATTCGAATCTCAG +ACACCGACTTGTATACGGTATTGAGAACAGAAGACATTCGGTATCACACATATCTCGAAGCCATACATTC +AGACAAACGCATTTCATTTCCCATGTACGACGATCTCATAGAACAGTGTCATCTATCGATGGAGCATAAA +AGTAAACTCGTCGACAAAGCACTCAATAAATTAGAGTCTACCATCGATAGTCAATCTAGACTATCGTATT +TGCCTCCGGAAATTATGCGCAATATCATAACCAAGCTAAGCGACTACCATCTAAACAGTATGTTGTACGG +AAAGAACCATTACAAATATTATCCATGATAGAAAGAAAATATTTAAAAAATAATCTATATGATTGGAGAA +GTAGGAAACAAACAGTAACAAGACGACGATTACTACATTATTAAATCATGAGGTCCGTATTATACTCGTA +TATATTGTTTCTCTCATGTATAATAATAAACGGAAGAGATATAGCACCACATGCACCATCCAATGGAAAG +TGTAAAGACAACGAATACAGAAGCCGTAATCTATGTTGTCTATCGTGTCCTCCGGGAACTTACGCTTTCA +GATTATGTGATAGCAAGACTAATACACAATGTACACCGTGTGGTTCGGATACCTTTACATCTCACAATAA +TCATTTACAGGCTTGTCTAAGTTGTAACGGAAGATGTGATAGTAATCAGGTAGAGACGCGATCGTGTAAC +ACGACTCACAATAGAATCTGTGAATGCTCTCCAGGATATTATTGTCTTCTCAAAGGAGCATCAGGGTGTA +GAACATGTATTTCTAAAACAAAGTGTGGAATAGGATACGGAGTATCCGGATACACGTCTACCGGAGACGT +CATCTGTTCTCCGTGTGGTCCCGGAACATATTCTCACACCGTCTCTTCCACAGATAAATGCGAACCCGTC +GTAACCAGCAATACATTTAACTATATCGATGTGGAAATTAACCTGTATCCAGTCAACGACACATCGTGTA +CTCGGACGACCACTACCGGTCTCAGCGAATCCATCTCAACGTCGGAACTAACTATTACCATGAATCATAA +AGATTGTGATCCAGTCTTTCGTGCAGAATACTTCTCTGTCCTTAATAATGTAGCAACTTCAGGATTCTTT +ACAGGAGAAAATAGATATCAGAATACTTCAAAGATATGTACTCTGAATTTCGAGATTAAATGTAACAACA +AAGATTCATCTTCCAAACAGTTAACGAAAACAAAGAATGATACTATCATGCCGCATTCAGAGACGGTAAC +TCTAGTGGGCGACTGTCTATCTAGCGTCGACATCTACATACTATATAGTAATACCAATACTCAAGACTAC +GAAAATGATACAATCTCTTATCATATGGGTAATGTTCTCGATGTCAATAGCCATATGCCCGCTAGTTGCG +ATATACATAAACTGATCACTAATTCCCAGAATCCCACCCACTTATAGTAAGTTTTTTTACCTATAAATAA +TAAATACAATAATTAATTTCTCGTAAAAGTAGAAAATATATTCTAATTTATTATATGGTAAGAAAGTAGA +ATCATCTAGAACAGTAATCAATCAATAGCAATCATGAAACAATATATTGTCCTGGCATGCATGTGCCTAG +TGGCAGCTGCTATGCCTACTAGTCTTCAACAATCTTCATCCTCGTGTACTGAAGAAGAAAACAAACATCA +TATGGGAATCGATGTTATTATCAAAGTCACAAAGCAAGACCAAACACCGACCAATGATAAGATTTGTCAA +TCCGTAACGGAAGTTACAGAGACCGAAGATGATGAGGTATCCGAAGAAGTTGTAAAAGGAGATCCCACCA +CTTATTACACTATCGTCGGTGCGGGTCTTAACATGAACTTTGGATTCACCAAATGCCCAAAGATTTTATC +CATCTCCGAATCCTCTGATGGAAACACTGTGAATACTAGATTGTCCAGCGTGTCACCGGGACAAGGTAAG +GACTCTCCCGCGATCACGCGTGAAGAAGCTCTGGCTATGATCAAAGACTGTGAGATGTCTATCGACATCA +GATGTAGCGAAGAAGAGAAAGACAGTGACATCAAGACCCATCCAGTACTTGGGTCTAACATCTCACATAA +GAAAGTGAGTTACAAAGATATCATCGGTTCAACGATCGTTGATACAAAATGTGTCAAGAACCTAGAGTTT +AGCGTACGTATCGGAGACATGTGTGAGGAATCATCTGAACTTGAAGTCAAGGATGGATTCAAGTATGTCG +ACGGATCGGCATCTGAAGGTGCAACCGATGATACTTCACTCATCGATTCAACAAAACTCAAAGCATGTGT +CTGAATCGATAACTCTATTCATCTGAAAATGGATGAGTTGGGTTAATCGAACGATTCAGACACCGCACCA +CGAATTAAAAAAGACCGGGCACTATATTCCGGTTTGCAAAACAAAAATATTTAACTACATTCACAAAAAG +TTACCTCTCGTTACTTCTTCTTTCTGTTTCAATATGTGATACGATATGATCACTATTCGTATTCTCTTGG +TCTCATAAAAAAGTTTTACAAAAAAAAAAAAAATATTTTTATTCTCTTTCTCTCTTCGATGGTCTCACAA +AAATATTAAACCTCTTTCTGATGTCTCAACTATTTCGTAAACGATAACGTCCAACAATATATTCTCGTAG +AGCTTATCAACATCCTTATACCAATCTAGGTTGTCAGACAATTGCATCATAAAATAATGTTTATAATTTA +CACGTTAACATCATATAATAAACGTATATAGTTAATATTTTTGGAATATAAATGATCTGTAAAATCCATG +TAGGGGACACTGCTCACGTTTTTTCTCTAGTACATAATTTCACACAAGTTTTTATACAGACAAATTAATT +CTCGTCCATATATTTTAAAACATTGACTTTTGTACTAAGAAAAATATCTTGACTAACCATCTCTTTCTCT +CTTCGATGGGTCTCACAAAAATATTAAACCTCTTTCTGATGGAGTCGTAAAAAGTTTTTATCCTTTCTCT +CTTCGATAGGTCTCACAAAAATATTAAACCTCTTTCTGATGGTCTCTATAAACGATTGATTTTTCTTACC +CTCTAGAGTTTCCTACGGTCGTGGGTCACACATTTTTTTCTAGACACTAAATAAAATAGTAAAATATAAT +ATTAATGTACTAAAA + diff --git a/schemes/mpxv/erasmus/2500/v1.0.0/scheme.bed b/schemes/mpxv/erasmus/2500/v1.0.0/scheme.bed new file mode 100644 index 0000000..d454c0b --- /dev/null +++ b/schemes/mpxv/erasmus/2500/v1.0.0/scheme.bed @@ -0,0 +1,176 @@ +ON563414.3 48 70 erasmus_1_LEFT_0 1 + +ON563414.3 2602 2624 erasmus_1_RIGHT_0 1 - +ON563414.3 2390 2412 erasmus_2_LEFT_0 2 + +ON563414.3 4829 4852 erasmus_2_RIGHT_0 2 - +ON563414.3 4588 4610 erasmus_3_LEFT_0 1 + +ON563414.3 7025 7047 erasmus_3_RIGHT_0 1 - +ON563414.3 6807 6829 erasmus_4_LEFT_0 2 + +ON563414.3 9250 9275 erasmus_4_RIGHT_0 2 - +ON563414.3 9083 9109 erasmus_5_LEFT_0 1 + +ON563414.3 11491 11514 erasmus_5_RIGHT_0 1 - +ON563414.3 11251 11273 erasmus_6_LEFT_0 2 + +ON563414.3 13804 13826 erasmus_6_RIGHT_0 2 - +ON563414.3 13625 13647 erasmus_7_LEFT_0 1 + +ON563414.3 16063 16086 erasmus_7_RIGHT_0 1 - +ON563414.3 15861 15883 erasmus_8_LEFT_0 2 + +ON563414.3 18289 18311 erasmus_8_RIGHT_0 2 - +ON563414.3 18097 18119 erasmus_9_LEFT_0 1 + +ON563414.3 20586 20610 erasmus_9_RIGHT_0 1 - +ON563414.3 20374 20396 erasmus_10_LEFT_0 2 + +ON563414.3 22843 22865 erasmus_10_RIGHT_0 2 - +ON563414.3 22585 22607 erasmus_11_LEFT_0 1 + +ON563414.3 25150 25174 erasmus_11_RIGHT_0 1 - +ON563414.3 24887 24909 erasmus_12_LEFT_0 2 + +ON563414.3 27374 27396 erasmus_12_RIGHT_0 2 - +ON563414.3 27208 27232 erasmus_13_LEFT_0 1 + +ON563414.3 29587 29609 erasmus_13_RIGHT_0 1 - +ON563414.3 29305 29328 erasmus_14_LEFT_0 2 + +ON563414.3 31879 31901 erasmus_14_RIGHT_0 2 - +ON563414.3 31661 31683 erasmus_15_LEFT_0 1 + +ON563414.3 34161 34183 erasmus_15_RIGHT_0 1 - +ON563414.3 33956 33978 erasmus_16_LEFT_0 2 + +ON563414.3 36418 36440 erasmus_16_RIGHT_0 2 - +ON563414.3 36186 36210 erasmus_17_LEFT_0 1 + +ON563414.3 38628 38650 erasmus_17_RIGHT_0 1 - +ON563414.3 38411 38433 erasmus_18_LEFT_0 2 + +ON563414.3 40934 40956 erasmus_18_RIGHT_0 2 - +ON563414.3 40740 40765 erasmus_19_LEFT_0 1 + +ON563414.3 43247 43269 erasmus_19_RIGHT_0 1 - +ON563414.3 43046 43075 erasmus_20_LEFT_0 2 + +ON563414.3 45479 45503 erasmus_20_RIGHT_0 2 - +ON563414.3 45260 45282 erasmus_21_LEFT_0 1 + +ON563414.3 47687 47709 erasmus_21_RIGHT_0 1 - +ON563414.3 47509 47536 erasmus_22_LEFT_0 2 + +ON563414.3 50003 50025 erasmus_22_RIGHT_0 2 - +ON563414.3 49729 49754 erasmus_23_LEFT_0 1 + +ON563414.3 52309 52331 erasmus_23_RIGHT_0 1 - +ON563414.3 52123 52146 erasmus_24_LEFT_0 2 + +ON563414.3 54553 54575 erasmus_24_RIGHT_0 2 - +ON563414.3 54371 54393 erasmus_25_LEFT_0 1 + +ON563414.3 56825 56847 erasmus_25_RIGHT_0 1 - +ON563414.3 56557 56581 erasmus_26_LEFT_0 2 + +ON563414.3 59133 59156 erasmus_26_RIGHT_0 2 - +ON563414.3 58940 58962 erasmus_27_LEFT_0 1 + +ON563414.3 61420 61442 erasmus_27_RIGHT_0 1 - +ON563414.3 61146 61168 erasmus_28_LEFT_0 2 + +ON563414.3 63698 63722 erasmus_28_RIGHT_0 2 - +ON563414.3 63523 63547 erasmus_29_LEFT_0 1 + +ON563414.3 65943 65965 erasmus_29_RIGHT_0 1 - +ON563414.3 65714 65736 erasmus_30_LEFT_0 2 + +ON563414.3 68146 68168 erasmus_30_RIGHT_0 2 - +ON563414.3 67967 67989 erasmus_31_LEFT_0 1 + +ON563414.3 70382 70404 erasmus_31_RIGHT_0 1 - +ON563414.3 70125 70149 erasmus_32_LEFT_0 2 + +ON563414.3 72685 72707 erasmus_32_RIGHT_0 2 - +ON563414.3 72417 72439 erasmus_33_LEFT_0 1 + +ON563414.3 75003 75025 erasmus_33_RIGHT_0 1 - +ON563414.3 74810 74832 erasmus_34_LEFT_0 2 + +ON563414.3 77307 77329 erasmus_34_RIGHT_0 2 - +ON563414.3 77111 77133 erasmus_35_LEFT_0 1 + +ON563414.3 79597 79619 erasmus_35_RIGHT_0 1 - +ON563414.3 79386 79408 erasmus_36_LEFT_0 2 + +ON563414.3 81853 81875 erasmus_36_RIGHT_0 2 - +ON563414.3 81588 81612 erasmus_37_LEFT_0 1 + +ON563414.3 84064 84089 erasmus_37_RIGHT_0 1 - +ON563414.3 83901 83923 erasmus_38_LEFT_0 2 + +ON563414.3 86316 86338 erasmus_38_RIGHT_0 2 - +ON563414.3 86062 86084 erasmus_39_LEFT_0 1 + +ON563414.3 88513 88535 erasmus_39_RIGHT_0 1 - +ON563414.3 88323 88345 erasmus_40_LEFT_0 2 + +ON563414.3 90775 90800 erasmus_40_RIGHT_0 2 - +ON563414.3 90609 90634 erasmus_41_LEFT_0 1 + +ON563414.3 92985 93010 erasmus_41_RIGHT_0 1 - +ON563414.3 92702 92724 erasmus_42_LEFT_0 2 + +ON563414.3 95299 95321 erasmus_42_RIGHT_0 2 - +ON563414.3 95041 95066 erasmus_43_LEFT_0 1 + +ON563414.3 97581 97603 erasmus_43_RIGHT_0 1 - +ON563414.3 97373 97395 erasmus_44_LEFT_0 2 + +ON563414.3 99843 99865 erasmus_44_RIGHT_0 2 - +ON563414.3 99679 99702 erasmus_45_LEFT_0 1 + +ON563414.3 102100 102123 erasmus_45_RIGHT_0 1 - +ON563414.3 101884 101906 erasmus_46_LEFT_0 2 + +ON563414.3 104341 104363 erasmus_46_RIGHT_0 2 - +ON563414.3 104156 104178 erasmus_47_LEFT_0 1 + +ON563414.3 106541 106563 erasmus_47_RIGHT_0 1 - +ON563414.3 106293 106315 erasmus_48_LEFT_0 2 + +ON563414.3 108802 108827 erasmus_48_RIGHT_0 2 - +ON563414.3 108580 108602 erasmus_49_LEFT_0 1 + +ON563414.3 111000 111022 erasmus_49_RIGHT_0 1 - +ON563414.3 110743 110765 erasmus_50_LEFT_0 2 + +ON563414.3 113303 113325 erasmus_50_RIGHT_0 2 - +ON563414.3 113103 113125 erasmus_51_LEFT_0 1 + +ON563414.3 115547 115570 erasmus_51_RIGHT_0 1 - +ON563414.3 115326 115348 erasmus_52_LEFT_0 2 + +ON563414.3 117752 117774 erasmus_52_RIGHT_0 2 - +ON563414.3 117543 117565 erasmus_53_LEFT_0 1 + +ON563414.3 120022 120044 erasmus_53_RIGHT_0 1 - +ON563414.3 119757 119779 erasmus_54_LEFT_0 2 + +ON563414.3 122339 122361 erasmus_54_RIGHT_0 2 - +ON563414.3 122157 122179 erasmus_55_LEFT_0 1 + +ON563414.3 124629 124654 erasmus_55_RIGHT_0 1 - +ON563414.3 124346 124368 erasmus_56_LEFT_0 2 + +ON563414.3 126828 126850 erasmus_56_RIGHT_0 2 - +ON563414.3 126605 126627 erasmus_57_LEFT_0 1 + +ON563414.3 129095 129117 erasmus_57_RIGHT_0 1 - +ON563414.3 128899 128922 erasmus_58_LEFT_0 2 + +ON563414.3 131375 131397 erasmus_58_RIGHT_0 2 - +ON563414.3 131133 131155 erasmus_59_LEFT_0 1 + +ON563414.3 133667 133689 erasmus_59_RIGHT_0 1 - +ON563414.3 133459 133481 erasmus_60_LEFT_0 2 + +ON563414.3 135878 135900 erasmus_60_RIGHT_0 2 - +ON563414.3 135639 135661 erasmus_61_LEFT_0 1 + +ON563414.3 138158 138182 erasmus_61_RIGHT_0 1 - +ON563414.3 137959 137981 erasmus_62_LEFT_0 2 + +ON563414.3 140456 140478 erasmus_62_RIGHT_0 2 - +ON563414.3 140200 140228 erasmus_63_LEFT_0 1 + +ON563414.3 142681 142703 erasmus_63_RIGHT_0 1 - +ON563414.3 142478 142500 erasmus_64_LEFT_0 2 + +ON563414.3 144918 144940 erasmus_64_RIGHT_0 2 - +ON563414.3 144705 144727 erasmus_65_LEFT_0 1 + +ON563414.3 147236 147258 erasmus_65_RIGHT_0 1 - +ON563414.3 147038 147060 erasmus_66_LEFT_0 2 + +ON563414.3 149497 149520 erasmus_66_RIGHT_0 2 - +ON563414.3 149268 149292 erasmus_67_LEFT_0 1 + +ON563414.3 151784 151806 erasmus_67_RIGHT_0 1 - +ON563414.3 151501 151523 erasmus_68_LEFT_0 2 + +ON563414.3 153997 154019 erasmus_68_RIGHT_0 2 - +ON563414.3 153796 153823 erasmus_69_LEFT_0 1 + +ON563414.3 156278 156305 erasmus_69_RIGHT_0 1 - +ON563414.3 156003 156031 erasmus_70_LEFT_0 2 + +ON563414.3 158540 158567 erasmus_70_RIGHT_0 2 - +ON563414.3 158363 158385 erasmus_71_LEFT_0 1 + +ON563414.3 160847 160869 erasmus_71_RIGHT_0 1 - +ON563414.3 160648 160672 erasmus_72_LEFT_0 2 + +ON563414.3 163064 163086 erasmus_72_RIGHT_0 2 - +ON563414.3 162800 162822 erasmus_73_LEFT_0 1 + +ON563414.3 165277 165299 erasmus_73_RIGHT_0 1 - +ON563414.3 165064 165086 erasmus_74_LEFT_0 2 + +ON563414.3 167473 167495 erasmus_74_RIGHT_0 2 - +ON563414.3 167220 167242 erasmus_75_LEFT_0 1 + +ON563414.3 169693 169722 erasmus_75_RIGHT_0 1 - +ON563414.3 169497 169524 erasmus_76_LEFT_0 2 + +ON563414.3 171919 171941 erasmus_76_RIGHT_0 2 - +ON563414.3 171744 171767 erasmus_77_LEFT_0 1 + +ON563414.3 174051 174073 erasmus_77_RIGHT_0 1 - +ON563414.3 173860 173884 erasmus_78_LEFT_0 2 + +ON563414.3 176270 176293 erasmus_78_RIGHT_0 2 - +ON563414.3 176075 176099 erasmus_79_LEFT_0 1 + +ON563414.3 178532 178554 erasmus_79_RIGHT_0 1 - +ON563414.3 178279 178303 erasmus_80_LEFT_0 2 + +ON563414.3 180885 180907 erasmus_80_RIGHT_0 2 - +ON563414.3 180719 180741 erasmus_81_LEFT_0 1 + +ON563414.3 183172 183194 erasmus_81_RIGHT_0 1 - +ON563414.3 182929 182951 erasmus_82_LEFT_0 2 + +ON563414.3 185438 185460 erasmus_82_RIGHT_0 2 - +ON563414.3 185247 185269 erasmus_83_LEFT_0 1 + +ON563414.3 187651 187673 erasmus_83_RIGHT_0 1 - +ON563414.3 187465 187487 erasmus_84_LEFT_0 2 + +ON563414.3 189901 189926 erasmus_84_RIGHT_0 2 - +ON563414.3 189634 189660 erasmus_85_LEFT_0 1 + +ON563414.3 192197 192219 erasmus_85_RIGHT_0 1 - +ON563414.3 191933 191959 erasmus_86_LEFT_0 2 + +ON563414.3 194505 194526 erasmus_86_RIGHT_0 2 - +ON563414.3 194280 194302 erasmus_87_LEFT_0 1 + +ON563414.3 196724 196749 erasmus_87_RIGHT_0 1 - +ON563414.3 194581 194603 erasmus_88_LEFT_0 2 + +ON563414.3 197135 197157 erasmus_88_RIGHT_0 2 - diff --git a/schemes/mpxv/yale/2000/v1.0.0/info.yml b/schemes/mpxv/yale/2000/v1.0.0/info.yml new file mode 100644 index 0000000..bd0e5ec --- /dev/null +++ b/schemes/mpxv/yale/2000/v1.0.0/info.yml @@ -0,0 +1,34 @@ +schema_version: 1.0.0a +organism: mpxv +name: yale +amplicon_size: 2000 +version: v1.0.0 +developers: +- Nicholas F.G. Chen +- Luc Gagne +- Matthew Doucette +- Sandra Smole +- Erika Buzby +- Joshua Hall +- Stephanie Ash +- Rachel Harrington +- Seana Cofsky +- Selina Clancy +- Curtis J Kapsak +- Joel Sevinsky +- Kevin Libuit +- Mallery I Breban +- Chrispin Chaguza +- Nathan D. Grubaugh +- Daniel J. Park +- Glen R. Gallagher +- Chantal B.F. Vogels +vendors: +- organisation_name: IDT + kit_name: Yale hMPXV Amplicon Panel +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/mpxv/yale/v4 +source_url: https://www.protocols.io/view/monkeypox-virus-multiplexed-pcr-amplicon-sequencin-5qpvob1nbl4o/v4 +citations: +- https://dx.doi.org/10.17504/protocols.io.5qpvob1nbl4o/v4 +primer_checksum: primaschema:5a221a7da2cd3a8e +reference_checksum: primaschema:81a4de73f5c665a2 diff --git a/schemes/mpxv/yale/2000/v1.0.0/primer.bed b/schemes/mpxv/yale/2000/v1.0.0/primer.bed new file mode 100644 index 0000000..7aa3a1e --- /dev/null +++ b/schemes/mpxv/yale/2000/v1.0.0/primer.bed @@ -0,0 +1,326 @@ +MT903345 356 378 MPXV_1_LEFT_1 1 + AGCAGTGTCCCCTACATGGATT +MT903345 2395 2417 MPXV_1_RIGHT_1 1 - AGGAGCATCAGGGTGTAGAACA +MT903345 1439 1461 MPXV_2_LEFT_1 2 + GTCGGTGTTTGGTCTTGCTTTG +MT903345 3353 3375 MPXV_2_RIGHT_1 2 - TCTCCCTACGACGATCACTACG +MT903345 2606 2628 MPXV_3_LEFT_1 1 + AATCTGGAAGCGTAAGTTCCCG +MT903345 4593 4615 MPXV_3_RIGHT_1 1 - CGAGATTGTGCGCATCGTTAAC +MT903345 3990 4012 MPXV_4_LEFT_1 2 + CGCGTAGATGAATCGCTTCTCA +MT903345 5584 5607 MPXV_4_RIGHT_1 2 - GGGGATTCCTTGTAGATGAACCC +MT903345 4991 5013 MPXV_5_LEFT_1 1 + ACCTGCTCGGTTACTTCTGTGT +MT903345 7027 7049 MPXV_5_RIGHT_1 1 - TGAGAGCGAGAGTGACAGTGAT +MT903345 6134 6156 MPXV_6_LEFT_1 2 + TCGTGAAACTGCTCATCGACAG +MT903345 8202 8224 MPXV_6_RIGHT_1 2 - TGATACGGAACCACCCACTGTA +MT903345 7417 7439 MPXV_7_LEFT_1 1 + CGACTCCCTTGTGTGTAACGTT +MT903345 9405 9427 MPXV_7_RIGHT_1 1 - GGCAGAGACAATTACCGATCGG +MT903345 8858 8880 MPXV_8_LEFT_1 2 + ACACGTACGCGCTTATTCATCA +MT903345 10646 10668 MPXV_8_RIGHT_1 2 - GGGTGGTGGCATCAAAGAAGAT +MT903345 9767 9789 MPXV_9_LEFT_1 1 + TTGGCTAATCGATTTCGGGCTT +MT903345 11731 11753 MPXV_9_RIGHT_1 1 - TCTCGATGATGGAGAGATCCCG +MT903345 10729 10751 MPXV_10_LEFT_1 2 + AGCTAAACCCAGGCATACGTTC +MT903345 12880 12902 MPXV_10_RIGHT_1 2 - TGAGGAGGTGGTTCTCGATGAA +MT903345 12290 12312 MPXV_11_LEFT_1 1 + TTAACAACTTCCGGACGCACAT +MT903345 14020 14042 MPXV_11_RIGHT_1 1 - TATCGAGTCGCATAGTGTTGCC +MT903345 13079 13101 MPXV_12_LEFT_1 2 + TACACCTCCGTTAACACCTCCA +MT903345 15347 15369 MPXV_12_RIGHT_1 2 - TCATGCTTCCCAAACGTGCTAA +MT903345 14663 14685 MPXV_13_LEFT_1 1 + CACATCTCGTTTTCGTGCGAAA +MT903345 16733 16755 MPXV_13_RIGHT_1 1 - ATCAAGTTCGCTGCCGGAATAA +MT903345 15866 15888 MPXV_14_LEFT_1 2 + TTGCGGACATGTTACACTCCTT +MT903345 18116 18138 MPXV_14_RIGHT_1 2 - TCACTCTGTGCAACGATGATGG +MT903345 17282 17304 MPXV_15_LEFT_1 1 + GCGTTGTCTGTATTCTGGAGCT +MT903345 19262 19284 MPXV_15_RIGHT_1 1 - TGGGGAAATTATTACGGCGTCT +MT903345 18294 18316 MPXV_16_LEFT_1 2 + TCAAGTGGTGGGGATCCATAGT +MT903345 20256 20278 MPXV_16_RIGHT_1 2 - TATCCGACGGTCCATTGCTAGA +MT903345 19740 19762 MPXV_17_LEFT_1 1 + ATGGCAAATCTAACTGCGGGTT +MT903345 21690 21712 MPXV_17_RIGHT_1 1 - ATTGAGCCCAGCGCATCTTATT +MT903345 21069 21091 MPXV_18_LEFT_1 2 + ATTGCAGAGGACGTCATGATCG +MT903345 22848 22870 MPXV_18_RIGHT_1 2 - TCTGTTGTTTACCACTCAGCGG +MT903345 22029 22051 MPXV_19_LEFT_1 1 + CAACAACGGACCACATCCTTCT +MT903345 23931 23953 MPXV_19_RIGHT_1 1 - TTCCATTACATCAGGCAGCCAC +MT903345 23058 23080 MPXV_20_LEFT_1 2 + AGTGAGTTCGGCGACAAAGTAC +MT903345 24880 24902 MPXV_20_RIGHT_1 2 - AAACGGTTCCCATGATGAACGT +MT903345 23975 23997 MPXV_21_LEFT_1 1 + CAATGCTCCAGCGTTCAACAAC +MT903345 26160 26182 MPXV_21_RIGHT_1 1 - ATGCTGATCCTCCCATTCCGTA +MT903345 25311 25333 MPXV_22_LEFT_1 2 + ACCTGATGCAGACAATAGCGAC +MT903345 27552 27574 MPXV_22_RIGHT_1 2 - CAGACGCTGTTCCAAGACTGAA +MT903345 26810 26832 MPXV_23_LEFT_1 1 + GTATCGTACTTCAACTCCGGCC +MT903345 28859 28881 MPXV_23_RIGHT_1 1 - AGGGTTTGGGTGTAAGATTGGC +MT903345 27858 27880 MPXV_24_LEFT_1 2 + CCAGAATGTTCACCAGCTCCAT +MT903345 30041 30063 MPXV_24_RIGHT_1 2 - ATGATCAGTGGCAGTTTGGACC +MT903345 29492 29514 MPXV_25_LEFT_1 1 + CACCGCCTCCTATATCAATGCC +MT903345 31057 31079 MPXV_25_RIGHT_1 1 - CTTTCGCACACATTTACGCCAA +MT903345 30136 30158 MPXV_26_LEFT_1 2 + GGATGCCACTGCTGGATTACAT +MT903345 32426 32448 MPXV_26_RIGHT_1 2 - TGATAATGCATCTTCCGTGCCC +MT903345 31730 31752 MPXV_27_LEFT_1 1 + ATAACCGGCGCTGTCATGTATC +MT903345 33548 33570 MPXV_27_RIGHT_1 1 - GGATGAATCCGAAGCACGTGTA +MT903345 33000 33022 MPXV_28_LEFT_1 2 + TCCTCTGTGGCTAGCGCTATAA +MT903345 34964 34986 MPXV_28_RIGHT_1 2 - GACTTTTCCCAAGTGGCTGGAA +MT903345 34181 34203 MPXV_29_LEFT_1 1 + CCACGGATCGTAATACGGCAAT +MT903345 36344 36366 MPXV_29_RIGHT_1 1 - ACAGGCAACAATTGGAATTGGC +MT903345 35632 35654 MPXV_30_LEFT_1 2 + GTAAACTCCGCCGTAGTTTCCA +MT903345 37370 37392 MPXV_30_RIGHT_1 2 - TGACTTGAACGCAGTCACAACA +MT903345 36423 36445 MPXV_31_LEFT_1 1 + GAGCAGCGATTTTGGCGTTATC +MT903345 38633 38655 MPXV_31_RIGHT_1 1 - TGAATGGCTGTCGTCAAAAGGT +MT903345 37903 37925 MPXV_32_LEFT_1 2 + ACGCTCCTGATTGTGTTTCGAA +MT903345 39666 39688 MPXV_32_RIGHT_1 2 - GGTTGAATTTATGCTCTGCGGC +MT903345 38939 38961 MPXV_33_LEFT_1 1 + ACCACGACCTTCTTCATTTCGT +MT903345 40939 40961 MPXV_33_RIGHT_1 1 - TCGCCGTTTCATTTTCAACAGC +MT903345 40025 40047 MPXV_34_LEFT_1 2 + AAGCGCTCCCCTAGTAGTACTC +MT903345 42129 42151 MPXV_34_RIGHT_1 2 - CGAAGGTCTTCTCTCACACGTG +MT903345 41186 41208 MPXV_35_LEFT_1 1 + CCCCGCAATACTCCTCATTACG +MT903345 43252 43274 MPXV_35_RIGHT_1 1 - ACGTCGCTGTAATAGACAAGGC +MT903345 42576 42598 MPXV_36_LEFT_1 2 + CGATGTGTCGGCGTTAAGATCT +MT903345 44393 44415 MPXV_36_RIGHT_1 2 - CGCTGCGTTTAAAAGCCTCATT +MT903345 43813 43835 MPXV_37_LEFT_1 1 + AACTACTGTCTCCAGAGCTCGC +MT903345 45826 45848 MPXV_37_RIGHT_1 1 - TATCTGCACGAGGACAAGGCTA +MT903345 45265 45287 MPXV_38_LEFT_1 2 + CCCTAGGACGAACTACTGCCAT +MT903345 47160 47182 MPXV_38_RIGHT_1 2 - ATAAACCGTCCATTGCCACACA +MT903345 46384 46406 MPXV_39_LEFT_1 1 + CTGTAGGCCGTGTATCAGCATC +MT903345 48581 48603 MPXV_39_RIGHT_1 1 - GTCCATGTATTCGGCAACCTCT +MT903345 47887 47909 MPXV_40_LEFT_1 2 + TCGCTGCTTTACATGTTTCCCA +MT903345 49557 49579 MPXV_40_RIGHT_1 2 - AGTTCAGCCGTCTACTCTTGGA +MT903345 49014 49036 MPXV_41_LEFT_1 1 + TCTGAGATAAAACAGGGACGCG +MT903345 50960 50982 MPXV_41_RIGHT_1 1 - TCGTTTGTTGGAAGGGCAGAAA +MT903345 50015 50037 MPXV_42_LEFT_1 2 + CGTTGCAACAATTCAGACTCCC +MT903345 52313 52335 MPXV_42_RIGHT_1 2 - ACGGTATGTTACGGTTTGCCAA +MT903345 51409 51431 MPXV_43_LEFT_1 1 + AAGAGCGACGTACAACTGTTGT +MT903345 53382 53404 MPXV_43_RIGHT_1 1 - GCGTTCAGTTGCATGGGTAAAG +MT903345 52745 52767 MPXV_44_LEFT_1 2 + ACGACACCGACTAATGTTTCCG +MT903345 54376 54398 MPXV_44_RIGHT_1 2 - ATCCAGATGTCGAAATGGCGAG +MT903345 53797 53819 MPXV_45_LEFT_1 1 + ACATCCTCTATCGACGGCTTCT +MT903345 55509 55531 MPXV_45_RIGHT_1 1 - CGGACACTACATCGAGAAGACG +MT903345 54852 54874 MPXV_46_LEFT_1 2 + CACGGCATGGTTTCTGTGACTA +MT903345 56830 56852 MPXV_46_RIGHT_1 2 - CGGGACCAAATGTAGTCAAGCT +MT903345 55974 55996 MPXV_47_LEFT_1 1 + CAGCATGGTACGTCTGACAACA +MT903345 57890 57912 MPXV_47_RIGHT_1 1 - AAGGATCCTAGGATCGCTAGCA +MT903345 57233 57255 MPXV_48_LEFT_1 2 + CCCAATGCGTCCATGTTGTCTA +MT903345 59232 59254 MPXV_48_RIGHT_1 2 - TTTGCATAGTCTTTCGGCGGAA +MT903345 58683 58705 MPXV_49_LEFT_1 1 + CCAATACCAACCCCAACAACCT +MT903345 60300 60322 MPXV_49_RIGHT_1 1 - ACCGTCGGATCTTTGGAATTGG +MT903345 59317 59339 MPXV_50_LEFT_1 2 + ATAGGACTAGCCGCGGTAACTT +MT903345 61288 61310 MPXV_50_RIGHT_1 2 - TGGCAGGGGGAATAGGTCTATC +MT903345 60711 60733 MPXV_51_LEFT_1 1 + CACGGCTACCTCATTAGCATCC +MT903345 62585 62607 MPXV_51_RIGHT_1 1 - GCGATATCTAGAAGCGGTGTGG +MT903345 61791 61813 MPXV_52_LEFT_1 2 + TATGGCTATTCTGGCGGCTAGA +MT903345 63941 63963 MPXV_52_RIGHT_1 2 - CCGGAGGCAATATTCCAACTGA +MT903345 63140 63162 MPXV_53_LEFT_1 1 + TCACCACGTGTGTTTCAGGATC +MT903345 64969 64991 MPXV_53_RIGHT_1 1 - TGTGCGGGTTTTCCTAGTGATG +MT903345 64237 64259 MPXV_54_LEFT_1 2 + GGCTCCTCTCTCAGGCTCTATT +MT903345 66153 66175 MPXV_54_RIGHT_1 2 - CAAAAGGAGCGGGGACAAAAAC +MT903345 65306 65328 MPXV_55_LEFT_1 1 + AGTGGGTAAGACGTCACAGGTA +MT903345 67356 67378 MPXV_55_RIGHT_1 1 - CGCGTCTCTCATGGACATGATA +MT903345 66510 66532 MPXV_56_LEFT_1 2 + AGTCCTATTCTCGCTGAGGAGT +MT903345 68422 68444 MPXV_56_RIGHT_1 2 - TGGGAATTGCTCACTTGTTGGA +MT903345 67453 67475 MPXV_57_LEFT_1 1 + AGTCCATCATTGGTTGCGTCAA +MT903345 69517 69539 MPXV_57_RIGHT_1 1 - ATGGAGTTTGGCCACCTGTTAC +MT903345 68682 68704 MPXV_58_LEFT_1 2 + GCACTAGAAACGGTCGATGCAT +MT903345 70481 70503 MPXV_58_RIGHT_1 2 - CAGCAGACGCGAATAGCATAGT +MT903345 69722 69744 MPXV_59_LEFT_1 1 + GCTTCACGTCACCCAACATACT +MT903345 71941 71963 MPXV_59_RIGHT_1 1 - TGAGAGTGATGGCAAACAACGT +MT903345 71216 71238 MPXV_60_LEFT_1 2 + TGTGTTCTACATGCGGCAAAGA +MT903345 73103 73125 MPXV_60_RIGHT_1 2 - GCCCAAGGCGGCAAAAATATAC +MT903345 72358 72380 MPXV_61_LEFT_1 1 + AGCCTTTCCACTTCTGCAGAAT +MT903345 74275 74297 MPXV_61_RIGHT_1 1 - ACGATTGTCGACCCTCTACAGT +MT903345 73551 73573 MPXV_62_LEFT_1 2 + ACTGATGCGTTTTCCAGGGAAT +MT903345 75439 75461 MPXV_62_RIGHT_1 2 - TGGTGGATGTGAACAGCATACG +MT903345 74533 74555 MPXV_63_LEFT_1 1 + GATCCAGAGTGTTCGAATGCCA +MT903345 76557 76579 MPXV_63_RIGHT_1 1 - AGAAAGGCGGTTGGATTTCCTC +MT903345 75823 75845 MPXV_64_LEFT_1 2 + GGTGGCGCTAGTCATCACATTA +MT903345 77575 77597 MPXV_64_RIGHT_1 2 - TGGGTTCTTGAAGAGGGCTAGA +MT903345 76756 76778 MPXV_65_LEFT_1 1 + TGGCTGATTAGGCTGTGGTCTA +MT903345 78814 78836 MPXV_65_RIGHT_1 1 - TCGAGCGCGGCTACTATAACTA +MT903345 77896 77919 MPXV_66_LEFT_1 2 + GCTAATCTAGCGTGTGAAGACGA +MT903345 80075 80097 MPXV_66_RIGHT_1 2 - CGCGTACGGATCTCTTGCTATT +MT903345 79176 79198 MPXV_67_LEFT_1 1 + CAGAAAGTGCAAATGAGGTCGC +MT903345 81264 81286 MPXV_67_RIGHT_1 1 - CCCCATCCATAGCACCTAGTCT +MT903345 80668 80691 MPXV_68_LEFT_1 2 + ACGCTAGTAATCCAATCGGAAGC +MT903345 82491 82513 MPXV_68_RIGHT_1 2 - CATAAACGGGGGCTCCATGAAT +MT903345 81726 81748 MPXV_69_LEFT_1 1 + TACTTTCCCATCCCTCCGTTGA +MT903345 83678 83700 MPXV_69_RIGHT_1 1 - CTCAGTGGTGGGTTTGACGAAT +MT903345 83016 83038 MPXV_70_LEFT_1 2 + GCTTTAGAGGCGGACTACTTGG +MT903345 84751 84773 MPXV_70_RIGHT_1 2 - AGAGTACTAGCTGCACCGAACT +MT903345 83959 83981 MPXV_71_LEFT_1 1 + TTACACAACAAGCCCTGTCCAG +MT903345 85799 85821 MPXV_71_RIGHT_1 1 - ATCATCCTTACCAGCGGCTAGA +MT903345 85165 85187 MPXV_72_LEFT_1 2 + CCCCGCTTCTATTTACTCCTGC +MT903345 87066 87088 MPXV_72_RIGHT_1 2 - TAACTAAATGGCGGCGGTGAAA +MT903345 86488 86510 MPXV_73_LEFT_1 1 + ATGTTCAGCGCCGTAGTAACTC +MT903345 88323 88345 MPXV_73_RIGHT_1 1 - AGATGCCGCTGACGTGATTAAA +MT903345 87600 87622 MPXV_74_LEFT_1 2 + GCATGCATGTATTGGAGCCATT +MT903345 89649 89671 MPXV_74_RIGHT_1 2 - CGTAATTGACCACGCCATTACG +MT903345 88702 88726 MPXV_75_LEFT_1 1 + AGACTGTTGTTATGGTCTTCGGAA +MT903345 91056 91078 MPXV_75_RIGHT_1 1 - ACCTACCACTTCAGCAGTTTGT +MT903345 90360 90382 MPXV_76_LEFT_1 2 + TCCAGCGTATGAGGTTTTGCAA +MT903345 92246 92268 MPXV_76_RIGHT_1 2 - AGATTGAGCGCCAGATCCTAGA +MT903345 91464 91486 MPXV_77_LEFT_1 1 + TGACCCTCACTCCGATATCTGG +MT903345 93361 93383 MPXV_77_RIGHT_1 1 - TTGGCAGCGTATTGATGTCCAA +MT903345 92707 92729 MPXV_78_LEFT_1 2 + AGCCCGTAAATGCAATCAGTGA +MT903345 94547 94570 MPXV_78_RIGHT_1 2 - TGGTACACCTACAGTAGCTCACA +MT903345 93852 93874 MPXV_79_LEFT_1 1 + CTAACTGCTTCTGGAGGCAAGG +MT903345 95607 95629 MPXV_79_RIGHT_1 1 - TTGGTGATTCGAACGGTACACC +MT903345 94872 94894 MPXV_80_LEFT_1 2 + GTCTAGTTTTCAGCACGGTGGT +MT903345 96654 96676 MPXV_80_RIGHT_1 2 - ATCGTGAGGTGGTTGCATTACA +MT903345 95897 95919 MPXV_81_LEFT_1 1 + CCCGGTAACTACCATAGTGGGA +MT903345 97806 97828 MPXV_81_RIGHT_1 1 - CGGTCTTCCAATGACACAAGGT +MT903345 97210 97232 MPXV_82_LEFT_1 2 + AGCGAATTACTCTGTCCGAGGA +MT903345 99077 99099 MPXV_82_RIGHT_1 2 - ACATTCACTCCGCGTTCGTTAA +MT903345 98139 98161 MPXV_83_LEFT_1 1 + GGAAGAGATTCCGGACTTTGCA +MT903345 100447 100469 MPXV_83_RIGHT_1 1 - AACGTCAACTCATGTGGTTCCA +MT903345 99465 99487 MPXV_84_LEFT_1 2 + TCGGATACAGACACTCAAGGGA +MT903345 101705 101727 MPXV_84_RIGHT_1 2 - CAATTTCTGACGCGCGATTGAA +MT903345 101077 101099 MPXV_85_LEFT_1 1 + TACTTGCGTGTCGTCGTTCAAT +MT903345 102833 102855 MPXV_85_RIGHT_1 1 - CTGGAACGTTCTCACCCCTTTT +MT903345 101916 101938 MPXV_86_LEFT_1 2 + GCTGCGTGTATAACAAGTGACG +MT903345 103806 103828 MPXV_86_RIGHT_1 2 - CGGTGGCTGAGTTTAACCAAGA +MT903345 103235 103257 MPXV_87_LEFT_1 1 + AACGGGATTGTCTGGCATATCA +MT903345 105068 105090 MPXV_87_RIGHT_1 1 - GAGTAAATCACACGCGGCCTAT +MT903345 104047 104069 MPXV_88_LEFT_1 2 + CCCCTCCCAATAGTTCTCCCTT +MT903345 106298 106320 MPXV_88_RIGHT_1 2 - TATTCAGAGAACGGGCCCATCT +MT903345 105407 105429 MPXV_89_LEFT_1 1 + TGGCGCTATCTTTCAACCAACT +MT903345 107404 107426 MPXV_89_RIGHT_1 1 - TCGGTTACGTGCCATATGTTGG +MT903345 106746 106768 MPXV_90_LEFT_1 2 + GGCAGATTCCGGATAACCAGTC +MT903345 108585 108607 MPXV_90_RIGHT_1 2 - TCCACGGATGATGTAGATGCAA +MT903345 107927 107949 MPXV_91_LEFT_1 1 + CCCAACTTCACCACCCTTGAAT +MT903345 109870 109892 MPXV_91_RIGHT_1 1 - ATGAAACTTCAGGCTGCACCAT +MT903345 109250 109272 MPXV_92_LEFT_1 2 + TGAGGCAGCAAATACTGAACCA +MT903345 111172 111194 MPXV_92_RIGHT_1 2 - TTCAGGCCGAAACAAACGATCT +MT903345 110548 110570 MPXV_93_LEFT_1 1 + TGGCGTTGTTCAACGTACTCTT +MT903345 112346 112368 MPXV_93_RIGHT_1 1 - ACCGACAACAATTCTCCGTTCT +MT903345 111725 111747 MPXV_94_LEFT_1 2 + GTCTGCTGGCGGTCATCATATT +MT903345 113489 113511 MPXV_94_RIGHT_1 2 - AATCTTGAACGCGAGACTGGTC +MT903345 112793 112815 MPXV_95_LEFT_1 1 + ATTGTTGTGCGTTGATGTCGTT +MT903345 114896 114918 MPXV_95_RIGHT_1 1 - ACAAATGGAACGCATCAAGGGA +MT903345 114028 114050 MPXV_96_LEFT_1 2 + TATCGGTCGCGTTCATTGGAAA +MT903345 116193 116216 MPXV_96_RIGHT_1 2 - AGTTTCCAGACTGGTATCCGAGT +MT903345 115648 115670 MPXV_97_LEFT_1 1 + ATAGGGCTCGTTCTACCTCCTG +MT903345 117548 117570 MPXV_97_RIGHT_1 1 - TTTCTGCGCAATGCCATACAAC +MT903345 116880 116902 MPXV_98_LEFT_1 2 + TGAAATAGCGCCAGTCCTCCTA +MT903345 118585 118607 MPXV_98_RIGHT_1 2 - CCAAACGTGCAATTTGTGGACA +MT903345 117756 117778 MPXV_99_LEFT_1 1 + CCTTCGGGAGATCCTGCATAGA +MT903345 119762 119784 MPXV_99_RIGHT_1 1 - ACTACGGCGGCATTATGTTCTC +MT903345 118947 118969 MPXV_100_LEFT_1 2 + CGGGGTTGATCTTGTGCTGTTA +MT903345 120739 120761 MPXV_100_RIGHT_1 2 - GTTCGTGGAATGGTCGGAGAAA +MT903345 120255 120277 MPXV_101_LEFT_1 1 + AGTCGAGGACTTGGATGTCTGT +MT903345 121948 121970 MPXV_101_RIGHT_1 1 - TCCCACCACCTTTTCGTCTAGT +MT903345 121324 121346 MPXV_102_LEFT_1 2 + CAGCGTGTATAGGATGGTGACG +MT903345 122954 122976 MPXV_102_RIGHT_1 2 - ATATAGCATCCGGGCAACGATG +MT903345 122348 122370 MPXV_103_LEFT_1 1 + TCTCCTGGATGTACGTCACCAA +MT903345 124294 124316 MPXV_103_RIGHT_1 1 - TCCACATGCCAAGTGAAGAGTG +MT903345 123607 123629 MPXV_104_LEFT_1 2 + ACAGTGTTGCCATTACCTCCAC +MT903345 125605 125627 MPXV_104_RIGHT_1 2 - GTCGCAAAAAGAAGCCCAAGAC +MT903345 124669 124691 MPXV_105_LEFT_1 1 + AACTGCTACACCTAGACCAGCT +MT903345 126984 127006 MPXV_105_RIGHT_1 1 - CTCATCGACAGTTGCACACTCA +MT903345 126327 126349 MPXV_106_LEFT_1 2 + GGATGAGATTCGAAGTGCGTGT +MT903345 128363 128385 MPXV_106_RIGHT_1 2 - AGAGCTTTTTCCACGCGTTACT +MT903345 127456 127478 MPXV_107_LEFT_1 1 + AGAACGTCAGCCTAGAAGGTCA +MT903345 129806 129828 MPXV_107_RIGHT_1 1 - GTTCAGCTTCCACCAGGTCATT +MT903345 128995 129017 MPXV_108_LEFT_1 2 + TTTGGTGCCTGATCCTAAAGCC +MT903345 131239 131261 MPXV_108_RIGHT_1 2 - AATATCGAGACCGCCTCTCTGA +MT903345 130359 130381 MPXV_109_LEFT_1 1 + CATCAGACGTTCCGGAAAGAGG +MT903345 132681 132703 MPXV_109_RIGHT_1 1 - AGAAGTAGCACCTCCATCCACA +MT903345 132061 132083 MPXV_110_LEFT_1 2 + ACAAGCGAATGAGGGACGAAAA +MT903345 133984 134006 MPXV_110_RIGHT_1 2 - AGTTGAACGACTGCGAACGTAA +MT903345 133125 133147 MPXV_111_LEFT_1 1 + TTCGAATTCACGGGGTACAACC +MT903345 135056 135078 MPXV_111_RIGHT_1 1 - AACCACATGCTACTGGAGGAGA +MT903345 134041 134063 MPXV_112_LEFT_1 2 + TGTAGCATTTCCACGGCATTCA +MT903345 136220 136242 MPXV_112_RIGHT_1 2 - TCCCATGGCCATTACCTACTGT +MT903345 135188 135210 MPXV_113_LEFT_1 1 + AGAGACGCGACTTCAGGAGTTA +MT903345 137446 137468 MPXV_113_RIGHT_1 1 - AGCTCCAATGCAATGGCTAACA +MT903345 136636 136658 MPXV_114_LEFT_1 2 + TGCATTTTCAGCACTCGACTGA +MT903345 138456 138478 MPXV_114_RIGHT_1 2 - GGCTGCGGTGTGTTTACTTTTT +MT903345 137753 137775 MPXV_115_LEFT_1 1 + GATGCCGTCCAGTCTGTACATC +MT903345 139755 139777 MPXV_115_RIGHT_1 1 - TGCCGACTTTTTGGAACGTTTG +MT903345 139065 139088 MPXV_116_LEFT_1 2 + AGTTTCCTTTAACTCGGTCGGTT +MT903345 141135 141157 MPXV_116_RIGHT_1 2 - TCTGCTCTTCGTCGTTTTCTGG +MT903345 140505 140527 MPXV_117_LEFT_1 1 + TTCCGCGTCTGAGATGGAAATG +MT903345 142493 142515 MPXV_117_RIGHT_1 1 - AGTCGCATGCTATGATGATGGT +MT903345 141726 141748 MPXV_118_LEFT_1 2 + GCCGGCCGCTATAATGATGTTA +MT903345 143899 143921 MPXV_118_RIGHT_1 2 - TATGGTTGTAGGGCCCTTGCTA +MT903345 143125 143147 MPXV_119_LEFT_1 1 + ATCCAATATCATGGCGCCTAGC +MT903345 145129 145151 MPXV_119_RIGHT_1 1 - AGGTACGTATACATGCGGGGAT +MT903345 144221 144243 MPXV_120_LEFT_1 2 + CTCGAGCATCCATTCGACTCAG +MT903345 146504 146526 MPXV_120_RIGHT_1 2 - GCGATACCGTATACGCGAAGTT +MT903345 145683 145705 MPXV_121_LEFT_1 1 + GCGGAACCAATAACGGAAATCC +MT903345 147491 147515 MPXV_121_RIGHT_1 1 - AGCTGTATGTCAATACCGGCATTA +MT903345 146655 146677 MPXV_122_LEFT_1 2 + GGGGTTCGTCTAGTGTTGCTTC +MT903345 148776 148798 MPXV_122_RIGHT_1 2 - TCGATGATGACGCTGTGCATAG +MT903345 148194 148216 MPXV_123_LEFT_1 1 + TTGCTGTCGAAGAGGCAAAAGA +MT903345 150016 150038 MPXV_123_RIGHT_1 1 - CCTCTGGAAGCACCCCTCTTAT +MT903345 149180 149202 MPXV_124_LEFT_1 2 + ATCCACTAGAGCAGCCGTATGA +MT903345 151244 151266 MPXV_124_RIGHT_1 2 - ATCCCTGACAAGTTCCTGGAGT +MT903345 150457 150479 MPXV_125_LEFT_1 1 + CGCGGACACACTGATAGCATAG +MT903345 152584 152606 MPXV_125_RIGHT_1 1 - TCTGGAACCGAGTACTTCCACA +MT903345 151815 151837 MPXV_126_LEFT_1 2 + GCGTTCTCTGGAGTAGCGTATG +MT903345 153595 153617 MPXV_126_RIGHT_1 2 - AACTTCCAAACGGTAGCGGTAC +MT903345 152655 152677 MPXV_127_LEFT_1 1 + TGTCTAATGATCCGCGAACGAT +MT903345 154813 154835 MPXV_127_RIGHT_1 1 - ACACGCACACGCTTTATCAGAT +MT903345 153992 154014 MPXV_128_LEFT_1 2 + GAGGAAAGGGTGGTATCATGGC +MT903345 155899 155921 MPXV_128_RIGHT_1 2 - CGCACGCACACAATCCTATCAT +MT903345 155006 155028 MPXV_129_LEFT_1 1 + GACGAGCTTCCGAGTTCCAATT +MT903345 157303 157325 MPXV_129_RIGHT_1 1 - GGAGGCTCCAGATAGGATGAGT +MT903345 156543 156565 MPXV_130_LEFT_1 2 + CCTGGAGAATTTGCCAAGGTCA +MT903345 158259 158281 MPXV_130_RIGHT_1 2 - ATCAACGATGACTCCTGATCGC +MT903345 157783 157805 MPXV_131_LEFT_1 1 + CCAACCATGTACCGTCGAGTTA +MT903345 159433 159455 MPXV_131_RIGHT_1 1 - TTGGTTCCGGAGTCGTGATTTC +MT903345 158398 158421 MPXV_132_LEFT_1 2 + GGAGTCGTTAAAGGTGACACACA +MT903345 160872 160895 MPXV_132_RIGHT_1 2 - GCATGTGATAAGACCTACGTGCT +MT903345 160098 160120 MPXV_133_LEFT_1 1 + CCGCCGGAAACTTTCTAGAACA +MT903345 162057 162079 MPXV_133_RIGHT_1 1 - AGGTCCTGGTTTGAGTGCATTC +MT903345 161313 161335 MPXV_134_LEFT_1 2 + GATGGTTGGGAGGTATCTTGCC +MT903345 163043 163065 MPXV_134_RIGHT_1 2 - TACCATGATTCTGGCCAATCCG +MT903345 162555 162577 MPXV_135_LEFT_1 1 + GAGTCCCAGACCAGAATTGCAG +MT903345 164489 164511 MPXV_135_RIGHT_1 1 - GCGACTGCTTCCGAAATACATG +MT903345 163858 163880 MPXV_136_LEFT_1 2 + GCCGAAGACAGTTACGGTTGTA +MT903345 165513 165535 MPXV_136_RIGHT_1 2 - CATTCCGCATTAGGACACGTGA +MT903345 164937 164960 MPXV_137_LEFT_1 1 + GCTGGATGCTGGAGATAAATGGT +MT903345 166946 166968 MPXV_137_RIGHT_1 1 - TCCGACGTCACATGACTCTGTA +MT903345 165993 166015 MPXV_138_LEFT_1 2 + TGGCGTTGACAATTATGGGTGT +MT903345 168215 168237 MPXV_138_RIGHT_1 2 - CCAAGGGCGTTAACCAGTGTAT +MT903345 167503 167525 MPXV_139_LEFT_1 1 + GCATCAAGACGTGGCAAACAAT +MT903345 169254 169276 MPXV_139_RIGHT_1 1 - AGCAATGATTCCACACCCAACT +MT903345 168314 168336 MPXV_140_LEFT_1 2 + CGATGCGAGAAGACTGAAGAGG +MT903345 170374 170396 MPXV_140_RIGHT_1 2 - CCTTTGGGGCGAATACTCTTCC +MT903345 169602 169628 MPXV_141_LEFT_1 1 + AGGACATTGGATATGTGGAAAAGTGA +MT903345 171509 171531 MPXV_141_RIGHT_1 1 - TGGCTCGCCGTAAATAGACATC +MT903345 170931 170953 MPXV_142_LEFT_1 2 + AGAGTGTGGGGGTAGTGTTACG +MT903345 172513 172535 MPXV_142_RIGHT_1 2 - GATGGTCTTCACCTCCCCAGTA +MT903345 171898 171920 MPXV_143_LEFT_1 1 + CAGCTGCAGCAACTTCTGTACT +MT903345 173581 173603 MPXV_143_RIGHT_1 1 - TCTCCGTCCTCGTCTTCTTCTT +MT903345 173009 173031 MPXV_144_LEFT_1 2 + ACCACGAACGAAACCTACTGTG +MT903345 174796 174818 MPXV_144_RIGHT_1 2 - CTTTGCACTGAATGGCTCTCCT +MT903345 174125 174147 MPXV_145_LEFT_1 1 + GGAAAGGGTGGAATGCGATACA +MT903345 176213 176235 MPXV_145_RIGHT_1 1 - TCCCACCATCTTACGTGAGACT +MT903345 175337 175359 MPXV_146_LEFT_1 2 + CCGTCACAAGACCACAGGTTTA +MT903345 177271 177293 MPXV_146_RIGHT_1 2 - TAGCGCAATGAAGTGGTGTACG +MT903345 176298 176321 MPXV_147_LEFT_1 1 + CGAAGACAGACATACCGTAGACG +MT903345 178300 178322 MPXV_147_RIGHT_1 1 - ACGTAGATCCGGCAACCAAAAT +MT903345 177434 177456 MPXV_148_LEFT_1 2 + GTCGTCTACCGCCTAAAAGTGT +MT903345 179327 179349 MPXV_148_RIGHT_1 2 - GAACCAGCTGCTCCATGATTCA +MT903345 178763 178785 MPXV_149_LEFT_1 1 + CCAGGCTCTCGCATAAAGATGA +MT903345 180553 180575 MPXV_149_RIGHT_1 1 - GGGCGGAATAACGGGAATGTAA +MT903345 179672 179694 MPXV_150_LEFT_1 2 + GCGCCGTCCATTTTAAAGCAAT +MT903345 181536 181558 MPXV_150_RIGHT_1 2 - CACCCTCAGCTATATCCGTCCA +MT903345 181043 181065 MPXV_151_LEFT_1 1 + CGTAATGGGGTCGATGGTTGAT +MT903345 182725 182747 MPXV_151_RIGHT_1 1 - AGACTGGCACGCGATTTAACAT +MT903345 182098 182121 MPXV_152_LEFT_1 2 + CCGACACCTTCATATCTTCCACC +MT903345 183821 183843 MPXV_152_RIGHT_1 2 - GGCCTGCTGACCAGTTAGTAAC +MT903345 182924 182946 MPXV_153_LEFT_1 1 + GCTCAATCTGCCAGGATCAAGT +MT903345 184806 184828 MPXV_153_RIGHT_1 1 - CATGACCCACCACACCATTAGG +MT903345 184067 184089 MPXV_154_LEFT_1 2 + GGAGAGGCCAGTAGATCCTGTT +MT903345 186170 186192 MPXV_154_RIGHT_1 2 - CGGCAATGATCCGTCGCTATAT +MT903345 185280 185302 MPXV_155_LEFT_1 1 + TGCGATAACAGACGACGATCAG +MT903345 187518 187540 MPXV_155_RIGHT_1 1 - GCCGTGGGTGTTAGTTGTCTAG +MT903345 186757 186779 MPXV_156_LEFT_1 2 + ACAGTTCGCCCGATATCTACCA +MT903345 188744 188766 MPXV_156_RIGHT_1 2 - CAGAGGCCAGCGTTAGAGATTC +MT903345 188008 188030 MPXV_157_LEFT_1 1 + TCGTTCTCCTCGGTGTCATAGT +MT903345 189896 189921 MPXV_157_RIGHT_1 1 - CCAGCTAACATAAGAGCCAATCTCA +MT903345 189166 189188 MPXV_158_LEFT_1 2 + TTCACAATGGCCTCTCCTTGTG +MT903345 191049 191071 MPXV_158_RIGHT_1 2 - TCGTGAAACTGCTCATCGACAG +MT903345 190199 190221 MPXV_159_LEFT_1 1 + ACTAGTTTGCTGCGTAGTTGCA +MT903345 192192 192214 MPXV_159_RIGHT_1 1 - ACCTGCTCGGTTACTTCTGTGT +MT903345 191597 191620 MPXV_160_LEFT_1 2 + AGGGGATTCCTTGTAGATGAACC +MT903345 193193 193215 MPXV_160_RIGHT_1 2 - CGCGTAGATGAATCGCTTCTCA +MT903345 192591 192613 MPXV_161_LEFT_1 1 + GAGATTGTGCGCATCGTTAACG +MT903345 194274 194296 MPXV_161_RIGHT_1 1 - GATGGTAGTCGCTTAGCTTGGT +MT903345 193264 193286 MPXV_162_LEFT_1 2 + CGCCGTTACACACTTACCTTCA +MT903345 195268 195290 MPXV_162_RIGHT_1 2 - CGTCTCTGAATGCGGCATGATA +MT903345 194788 194810 MPXV_163_LEFT_1 1 + AGGAGCATCAGGGTGTAGAACA +MT903345 196402 196424 MPXV_163_RIGHT_1 1 - TTTAATTCGTGGTGCGGTGTCT diff --git a/schemes/mpxv/yale/2000/v1.0.0/primer.svg b/schemes/mpxv/yale/2000/v1.0.0/primer.svg new file mode 100644 index 0000000..f56b1a0 --- /dev/null +++ b/schemes/mpxv/yale/2000/v1.0.0/primer.svg @@ -0,0 +1 @@ +12pool010,00020,00030,00040,00050,00060,00070,00080,00090,000100,000110,000120,000130,000140,000150,000160,000170,000180,000190,000200,000MT903345+-strand \ No newline at end of file diff --git a/mpxv/yale/v3/reference.fasta b/schemes/mpxv/yale/2000/v1.0.0/reference.fasta similarity index 100% rename from mpxv/yale/v3/reference.fasta rename to schemes/mpxv/yale/2000/v1.0.0/reference.fasta diff --git a/schemes/mpxv/yale/2000/v1.0.0/scheme.bed b/schemes/mpxv/yale/2000/v1.0.0/scheme.bed new file mode 100644 index 0000000..3428336 --- /dev/null +++ b/schemes/mpxv/yale/2000/v1.0.0/scheme.bed @@ -0,0 +1,326 @@ +MT903345 356 378 MPXV_1_LEFT_1 1 + +MT903345 2395 2417 MPXV_1_RIGHT_1 1 - +MT903345 1439 1461 MPXV_2_LEFT_1 2 + +MT903345 3353 3375 MPXV_2_RIGHT_1 2 - +MT903345 2606 2628 MPXV_3_LEFT_1 1 + +MT903345 4593 4615 MPXV_3_RIGHT_1 1 - +MT903345 3990 4012 MPXV_4_LEFT_1 2 + +MT903345 5584 5607 MPXV_4_RIGHT_1 2 - +MT903345 4991 5013 MPXV_5_LEFT_1 1 + +MT903345 7027 7049 MPXV_5_RIGHT_1 1 - +MT903345 6134 6156 MPXV_6_LEFT_1 2 + +MT903345 8202 8224 MPXV_6_RIGHT_1 2 - +MT903345 7417 7439 MPXV_7_LEFT_1 1 + +MT903345 9405 9427 MPXV_7_RIGHT_1 1 - +MT903345 8858 8880 MPXV_8_LEFT_1 2 + +MT903345 10646 10668 MPXV_8_RIGHT_1 2 - +MT903345 9767 9789 MPXV_9_LEFT_1 1 + +MT903345 11731 11753 MPXV_9_RIGHT_1 1 - +MT903345 10729 10751 MPXV_10_LEFT_1 2 + +MT903345 12880 12902 MPXV_10_RIGHT_1 2 - +MT903345 12290 12312 MPXV_11_LEFT_1 1 + +MT903345 14020 14042 MPXV_11_RIGHT_1 1 - +MT903345 13079 13101 MPXV_12_LEFT_1 2 + +MT903345 15347 15369 MPXV_12_RIGHT_1 2 - +MT903345 14663 14685 MPXV_13_LEFT_1 1 + +MT903345 16733 16755 MPXV_13_RIGHT_1 1 - +MT903345 15866 15888 MPXV_14_LEFT_1 2 + +MT903345 18116 18138 MPXV_14_RIGHT_1 2 - +MT903345 17282 17304 MPXV_15_LEFT_1 1 + +MT903345 19262 19284 MPXV_15_RIGHT_1 1 - +MT903345 18294 18316 MPXV_16_LEFT_1 2 + +MT903345 20256 20278 MPXV_16_RIGHT_1 2 - +MT903345 19740 19762 MPXV_17_LEFT_1 1 + +MT903345 21690 21712 MPXV_17_RIGHT_1 1 - +MT903345 21069 21091 MPXV_18_LEFT_1 2 + +MT903345 22848 22870 MPXV_18_RIGHT_1 2 - +MT903345 22029 22051 MPXV_19_LEFT_1 1 + +MT903345 23931 23953 MPXV_19_RIGHT_1 1 - +MT903345 23058 23080 MPXV_20_LEFT_1 2 + +MT903345 24880 24902 MPXV_20_RIGHT_1 2 - +MT903345 23975 23997 MPXV_21_LEFT_1 1 + +MT903345 26160 26182 MPXV_21_RIGHT_1 1 - +MT903345 25311 25333 MPXV_22_LEFT_1 2 + +MT903345 27552 27574 MPXV_22_RIGHT_1 2 - +MT903345 26810 26832 MPXV_23_LEFT_1 1 + +MT903345 28859 28881 MPXV_23_RIGHT_1 1 - +MT903345 27858 27880 MPXV_24_LEFT_1 2 + +MT903345 30041 30063 MPXV_24_RIGHT_1 2 - +MT903345 29492 29514 MPXV_25_LEFT_1 1 + +MT903345 31057 31079 MPXV_25_RIGHT_1 1 - +MT903345 30136 30158 MPXV_26_LEFT_1 2 + +MT903345 32426 32448 MPXV_26_RIGHT_1 2 - +MT903345 31730 31752 MPXV_27_LEFT_1 1 + +MT903345 33548 33570 MPXV_27_RIGHT_1 1 - +MT903345 33000 33022 MPXV_28_LEFT_1 2 + +MT903345 34964 34986 MPXV_28_RIGHT_1 2 - +MT903345 34181 34203 MPXV_29_LEFT_1 1 + +MT903345 36344 36366 MPXV_29_RIGHT_1 1 - +MT903345 35632 35654 MPXV_30_LEFT_1 2 + +MT903345 37370 37392 MPXV_30_RIGHT_1 2 - +MT903345 36423 36445 MPXV_31_LEFT_1 1 + +MT903345 38633 38655 MPXV_31_RIGHT_1 1 - +MT903345 37903 37925 MPXV_32_LEFT_1 2 + +MT903345 39666 39688 MPXV_32_RIGHT_1 2 - +MT903345 38939 38961 MPXV_33_LEFT_1 1 + +MT903345 40939 40961 MPXV_33_RIGHT_1 1 - +MT903345 40025 40047 MPXV_34_LEFT_1 2 + +MT903345 42129 42151 MPXV_34_RIGHT_1 2 - +MT903345 41186 41208 MPXV_35_LEFT_1 1 + +MT903345 43252 43274 MPXV_35_RIGHT_1 1 - +MT903345 42576 42598 MPXV_36_LEFT_1 2 + +MT903345 44393 44415 MPXV_36_RIGHT_1 2 - +MT903345 43813 43835 MPXV_37_LEFT_1 1 + +MT903345 45826 45848 MPXV_37_RIGHT_1 1 - +MT903345 45265 45287 MPXV_38_LEFT_1 2 + +MT903345 47160 47182 MPXV_38_RIGHT_1 2 - +MT903345 46384 46406 MPXV_39_LEFT_1 1 + +MT903345 48581 48603 MPXV_39_RIGHT_1 1 - +MT903345 47887 47909 MPXV_40_LEFT_1 2 + +MT903345 49557 49579 MPXV_40_RIGHT_1 2 - +MT903345 49014 49036 MPXV_41_LEFT_1 1 + +MT903345 50960 50982 MPXV_41_RIGHT_1 1 - +MT903345 50015 50037 MPXV_42_LEFT_1 2 + +MT903345 52313 52335 MPXV_42_RIGHT_1 2 - +MT903345 51409 51431 MPXV_43_LEFT_1 1 + +MT903345 53382 53404 MPXV_43_RIGHT_1 1 - +MT903345 52745 52767 MPXV_44_LEFT_1 2 + +MT903345 54376 54398 MPXV_44_RIGHT_1 2 - +MT903345 53797 53819 MPXV_45_LEFT_1 1 + +MT903345 55509 55531 MPXV_45_RIGHT_1 1 - +MT903345 54852 54874 MPXV_46_LEFT_1 2 + +MT903345 56830 56852 MPXV_46_RIGHT_1 2 - +MT903345 55974 55996 MPXV_47_LEFT_1 1 + +MT903345 57890 57912 MPXV_47_RIGHT_1 1 - +MT903345 57233 57255 MPXV_48_LEFT_1 2 + +MT903345 59232 59254 MPXV_48_RIGHT_1 2 - +MT903345 58683 58705 MPXV_49_LEFT_1 1 + +MT903345 60300 60322 MPXV_49_RIGHT_1 1 - +MT903345 59317 59339 MPXV_50_LEFT_1 2 + +MT903345 61288 61310 MPXV_50_RIGHT_1 2 - +MT903345 60711 60733 MPXV_51_LEFT_1 1 + +MT903345 62585 62607 MPXV_51_RIGHT_1 1 - +MT903345 61791 61813 MPXV_52_LEFT_1 2 + +MT903345 63941 63963 MPXV_52_RIGHT_1 2 - +MT903345 63140 63162 MPXV_53_LEFT_1 1 + +MT903345 64969 64991 MPXV_53_RIGHT_1 1 - +MT903345 64237 64259 MPXV_54_LEFT_1 2 + +MT903345 66153 66175 MPXV_54_RIGHT_1 2 - +MT903345 65306 65328 MPXV_55_LEFT_1 1 + +MT903345 67356 67378 MPXV_55_RIGHT_1 1 - +MT903345 66510 66532 MPXV_56_LEFT_1 2 + +MT903345 68422 68444 MPXV_56_RIGHT_1 2 - +MT903345 67453 67475 MPXV_57_LEFT_1 1 + +MT903345 69517 69539 MPXV_57_RIGHT_1 1 - +MT903345 68682 68704 MPXV_58_LEFT_1 2 + +MT903345 70481 70503 MPXV_58_RIGHT_1 2 - +MT903345 69722 69744 MPXV_59_LEFT_1 1 + +MT903345 71941 71963 MPXV_59_RIGHT_1 1 - +MT903345 71216 71238 MPXV_60_LEFT_1 2 + +MT903345 73103 73125 MPXV_60_RIGHT_1 2 - +MT903345 72358 72380 MPXV_61_LEFT_1 1 + +MT903345 74275 74297 MPXV_61_RIGHT_1 1 - +MT903345 73551 73573 MPXV_62_LEFT_1 2 + +MT903345 75439 75461 MPXV_62_RIGHT_1 2 - +MT903345 74533 74555 MPXV_63_LEFT_1 1 + +MT903345 76557 76579 MPXV_63_RIGHT_1 1 - +MT903345 75823 75845 MPXV_64_LEFT_1 2 + +MT903345 77575 77597 MPXV_64_RIGHT_1 2 - +MT903345 76756 76778 MPXV_65_LEFT_1 1 + +MT903345 78814 78836 MPXV_65_RIGHT_1 1 - +MT903345 77896 77919 MPXV_66_LEFT_1 2 + +MT903345 80075 80097 MPXV_66_RIGHT_1 2 - +MT903345 79176 79198 MPXV_67_LEFT_1 1 + +MT903345 81264 81286 MPXV_67_RIGHT_1 1 - +MT903345 80668 80691 MPXV_68_LEFT_1 2 + +MT903345 82491 82513 MPXV_68_RIGHT_1 2 - +MT903345 81726 81748 MPXV_69_LEFT_1 1 + +MT903345 83678 83700 MPXV_69_RIGHT_1 1 - +MT903345 83016 83038 MPXV_70_LEFT_1 2 + +MT903345 84751 84773 MPXV_70_RIGHT_1 2 - +MT903345 83959 83981 MPXV_71_LEFT_1 1 + +MT903345 85799 85821 MPXV_71_RIGHT_1 1 - +MT903345 85165 85187 MPXV_72_LEFT_1 2 + +MT903345 87066 87088 MPXV_72_RIGHT_1 2 - +MT903345 86488 86510 MPXV_73_LEFT_1 1 + +MT903345 88323 88345 MPXV_73_RIGHT_1 1 - +MT903345 87600 87622 MPXV_74_LEFT_1 2 + +MT903345 89649 89671 MPXV_74_RIGHT_1 2 - +MT903345 88702 88726 MPXV_75_LEFT_1 1 + +MT903345 91056 91078 MPXV_75_RIGHT_1 1 - +MT903345 90360 90382 MPXV_76_LEFT_1 2 + +MT903345 92246 92268 MPXV_76_RIGHT_1 2 - +MT903345 91464 91486 MPXV_77_LEFT_1 1 + +MT903345 93361 93383 MPXV_77_RIGHT_1 1 - +MT903345 92707 92729 MPXV_78_LEFT_1 2 + +MT903345 94547 94570 MPXV_78_RIGHT_1 2 - +MT903345 93852 93874 MPXV_79_LEFT_1 1 + +MT903345 95607 95629 MPXV_79_RIGHT_1 1 - +MT903345 94872 94894 MPXV_80_LEFT_1 2 + +MT903345 96654 96676 MPXV_80_RIGHT_1 2 - +MT903345 95897 95919 MPXV_81_LEFT_1 1 + +MT903345 97806 97828 MPXV_81_RIGHT_1 1 - +MT903345 97210 97232 MPXV_82_LEFT_1 2 + +MT903345 99077 99099 MPXV_82_RIGHT_1 2 - +MT903345 98139 98161 MPXV_83_LEFT_1 1 + +MT903345 100447 100469 MPXV_83_RIGHT_1 1 - +MT903345 99465 99487 MPXV_84_LEFT_1 2 + +MT903345 101705 101727 MPXV_84_RIGHT_1 2 - +MT903345 101077 101099 MPXV_85_LEFT_1 1 + +MT903345 102833 102855 MPXV_85_RIGHT_1 1 - +MT903345 101916 101938 MPXV_86_LEFT_1 2 + +MT903345 103806 103828 MPXV_86_RIGHT_1 2 - +MT903345 103235 103257 MPXV_87_LEFT_1 1 + +MT903345 105068 105090 MPXV_87_RIGHT_1 1 - +MT903345 104047 104069 MPXV_88_LEFT_1 2 + +MT903345 106298 106320 MPXV_88_RIGHT_1 2 - +MT903345 105407 105429 MPXV_89_LEFT_1 1 + +MT903345 107404 107426 MPXV_89_RIGHT_1 1 - +MT903345 106746 106768 MPXV_90_LEFT_1 2 + +MT903345 108585 108607 MPXV_90_RIGHT_1 2 - +MT903345 107927 107949 MPXV_91_LEFT_1 1 + +MT903345 109870 109892 MPXV_91_RIGHT_1 1 - +MT903345 109250 109272 MPXV_92_LEFT_1 2 + +MT903345 111172 111194 MPXV_92_RIGHT_1 2 - +MT903345 110548 110570 MPXV_93_LEFT_1 1 + +MT903345 112346 112368 MPXV_93_RIGHT_1 1 - +MT903345 111725 111747 MPXV_94_LEFT_1 2 + +MT903345 113489 113511 MPXV_94_RIGHT_1 2 - +MT903345 112793 112815 MPXV_95_LEFT_1 1 + +MT903345 114896 114918 MPXV_95_RIGHT_1 1 - +MT903345 114028 114050 MPXV_96_LEFT_1 2 + +MT903345 116193 116216 MPXV_96_RIGHT_1 2 - +MT903345 115648 115670 MPXV_97_LEFT_1 1 + +MT903345 117548 117570 MPXV_97_RIGHT_1 1 - +MT903345 116880 116902 MPXV_98_LEFT_1 2 + +MT903345 118585 118607 MPXV_98_RIGHT_1 2 - +MT903345 117756 117778 MPXV_99_LEFT_1 1 + +MT903345 119762 119784 MPXV_99_RIGHT_1 1 - +MT903345 118947 118969 MPXV_100_LEFT_1 2 + +MT903345 120739 120761 MPXV_100_RIGHT_1 2 - +MT903345 120255 120277 MPXV_101_LEFT_1 1 + +MT903345 121948 121970 MPXV_101_RIGHT_1 1 - +MT903345 121324 121346 MPXV_102_LEFT_1 2 + +MT903345 122954 122976 MPXV_102_RIGHT_1 2 - +MT903345 122348 122370 MPXV_103_LEFT_1 1 + +MT903345 124294 124316 MPXV_103_RIGHT_1 1 - +MT903345 123607 123629 MPXV_104_LEFT_1 2 + +MT903345 125605 125627 MPXV_104_RIGHT_1 2 - +MT903345 124669 124691 MPXV_105_LEFT_1 1 + +MT903345 126984 127006 MPXV_105_RIGHT_1 1 - +MT903345 126327 126349 MPXV_106_LEFT_1 2 + +MT903345 128363 128385 MPXV_106_RIGHT_1 2 - +MT903345 127456 127478 MPXV_107_LEFT_1 1 + +MT903345 129806 129828 MPXV_107_RIGHT_1 1 - +MT903345 128995 129017 MPXV_108_LEFT_1 2 + +MT903345 131239 131261 MPXV_108_RIGHT_1 2 - +MT903345 130359 130381 MPXV_109_LEFT_1 1 + +MT903345 132681 132703 MPXV_109_RIGHT_1 1 - +MT903345 132061 132083 MPXV_110_LEFT_1 2 + +MT903345 133984 134006 MPXV_110_RIGHT_1 2 - +MT903345 133125 133147 MPXV_111_LEFT_1 1 + +MT903345 135056 135078 MPXV_111_RIGHT_1 1 - +MT903345 134041 134063 MPXV_112_LEFT_1 2 + +MT903345 136220 136242 MPXV_112_RIGHT_1 2 - +MT903345 135188 135210 MPXV_113_LEFT_1 1 + +MT903345 137446 137468 MPXV_113_RIGHT_1 1 - +MT903345 136636 136658 MPXV_114_LEFT_1 2 + +MT903345 138456 138478 MPXV_114_RIGHT_1 2 - +MT903345 137753 137775 MPXV_115_LEFT_1 1 + +MT903345 139755 139777 MPXV_115_RIGHT_1 1 - +MT903345 139065 139088 MPXV_116_LEFT_1 2 + +MT903345 141135 141157 MPXV_116_RIGHT_1 2 - +MT903345 140505 140527 MPXV_117_LEFT_1 1 + +MT903345 142493 142515 MPXV_117_RIGHT_1 1 - +MT903345 141726 141748 MPXV_118_LEFT_1 2 + +MT903345 143899 143921 MPXV_118_RIGHT_1 2 - +MT903345 143125 143147 MPXV_119_LEFT_1 1 + +MT903345 145129 145151 MPXV_119_RIGHT_1 1 - +MT903345 144221 144243 MPXV_120_LEFT_1 2 + +MT903345 146504 146526 MPXV_120_RIGHT_1 2 - +MT903345 145683 145705 MPXV_121_LEFT_1 1 + +MT903345 147491 147515 MPXV_121_RIGHT_1 1 - +MT903345 146655 146677 MPXV_122_LEFT_1 2 + +MT903345 148776 148798 MPXV_122_RIGHT_1 2 - +MT903345 148194 148216 MPXV_123_LEFT_1 1 + +MT903345 150016 150038 MPXV_123_RIGHT_1 1 - +MT903345 149180 149202 MPXV_124_LEFT_1 2 + +MT903345 151244 151266 MPXV_124_RIGHT_1 2 - +MT903345 150457 150479 MPXV_125_LEFT_1 1 + +MT903345 152584 152606 MPXV_125_RIGHT_1 1 - +MT903345 151815 151837 MPXV_126_LEFT_1 2 + +MT903345 153595 153617 MPXV_126_RIGHT_1 2 - +MT903345 152655 152677 MPXV_127_LEFT_1 1 + +MT903345 154813 154835 MPXV_127_RIGHT_1 1 - +MT903345 153992 154014 MPXV_128_LEFT_1 2 + +MT903345 155899 155921 MPXV_128_RIGHT_1 2 - +MT903345 155006 155028 MPXV_129_LEFT_1 1 + +MT903345 157303 157325 MPXV_129_RIGHT_1 1 - +MT903345 156543 156565 MPXV_130_LEFT_1 2 + +MT903345 158259 158281 MPXV_130_RIGHT_1 2 - +MT903345 157783 157805 MPXV_131_LEFT_1 1 + +MT903345 159433 159455 MPXV_131_RIGHT_1 1 - +MT903345 158398 158421 MPXV_132_LEFT_1 2 + +MT903345 160872 160895 MPXV_132_RIGHT_1 2 - +MT903345 160098 160120 MPXV_133_LEFT_1 1 + +MT903345 162057 162079 MPXV_133_RIGHT_1 1 - +MT903345 161313 161335 MPXV_134_LEFT_1 2 + +MT903345 163043 163065 MPXV_134_RIGHT_1 2 - +MT903345 162555 162577 MPXV_135_LEFT_1 1 + +MT903345 164489 164511 MPXV_135_RIGHT_1 1 - +MT903345 163858 163880 MPXV_136_LEFT_1 2 + +MT903345 165513 165535 MPXV_136_RIGHT_1 2 - +MT903345 164937 164960 MPXV_137_LEFT_1 1 + +MT903345 166946 166968 MPXV_137_RIGHT_1 1 - +MT903345 165993 166015 MPXV_138_LEFT_1 2 + +MT903345 168215 168237 MPXV_138_RIGHT_1 2 - +MT903345 167503 167525 MPXV_139_LEFT_1 1 + +MT903345 169254 169276 MPXV_139_RIGHT_1 1 - +MT903345 168314 168336 MPXV_140_LEFT_1 2 + +MT903345 170374 170396 MPXV_140_RIGHT_1 2 - +MT903345 169602 169628 MPXV_141_LEFT_1 1 + +MT903345 171509 171531 MPXV_141_RIGHT_1 1 - +MT903345 170931 170953 MPXV_142_LEFT_1 2 + +MT903345 172513 172535 MPXV_142_RIGHT_1 2 - +MT903345 171898 171920 MPXV_143_LEFT_1 1 + +MT903345 173581 173603 MPXV_143_RIGHT_1 1 - +MT903345 173009 173031 MPXV_144_LEFT_1 2 + +MT903345 174796 174818 MPXV_144_RIGHT_1 2 - +MT903345 174125 174147 MPXV_145_LEFT_1 1 + +MT903345 176213 176235 MPXV_145_RIGHT_1 1 - +MT903345 175337 175359 MPXV_146_LEFT_1 2 + +MT903345 177271 177293 MPXV_146_RIGHT_1 2 - +MT903345 176298 176321 MPXV_147_LEFT_1 1 + +MT903345 178300 178322 MPXV_147_RIGHT_1 1 - +MT903345 177434 177456 MPXV_148_LEFT_1 2 + +MT903345 179327 179349 MPXV_148_RIGHT_1 2 - +MT903345 178763 178785 MPXV_149_LEFT_1 1 + +MT903345 180553 180575 MPXV_149_RIGHT_1 1 - +MT903345 179672 179694 MPXV_150_LEFT_1 2 + +MT903345 181536 181558 MPXV_150_RIGHT_1 2 - +MT903345 181043 181065 MPXV_151_LEFT_1 1 + +MT903345 182725 182747 MPXV_151_RIGHT_1 1 - +MT903345 182098 182121 MPXV_152_LEFT_1 2 + +MT903345 183821 183843 MPXV_152_RIGHT_1 2 - +MT903345 182924 182946 MPXV_153_LEFT_1 1 + +MT903345 184806 184828 MPXV_153_RIGHT_1 1 - +MT903345 184067 184089 MPXV_154_LEFT_1 2 + +MT903345 186170 186192 MPXV_154_RIGHT_1 2 - +MT903345 185280 185302 MPXV_155_LEFT_1 1 + +MT903345 187518 187540 MPXV_155_RIGHT_1 1 - +MT903345 186757 186779 MPXV_156_LEFT_1 2 + +MT903345 188744 188766 MPXV_156_RIGHT_1 2 - +MT903345 188008 188030 MPXV_157_LEFT_1 1 + +MT903345 189896 189921 MPXV_157_RIGHT_1 1 - +MT903345 189166 189188 MPXV_158_LEFT_1 2 + +MT903345 191049 191071 MPXV_158_RIGHT_1 2 - +MT903345 190199 190221 MPXV_159_LEFT_1 1 + +MT903345 192192 192214 MPXV_159_RIGHT_1 1 - +MT903345 191597 191620 MPXV_160_LEFT_1 2 + +MT903345 193193 193215 MPXV_160_RIGHT_1 2 - +MT903345 192591 192613 MPXV_161_LEFT_1 1 + +MT903345 194274 194296 MPXV_161_RIGHT_1 1 - +MT903345 193264 193286 MPXV_162_LEFT_1 2 + +MT903345 195268 195290 MPXV_162_RIGHT_1 2 - +MT903345 194788 194810 MPXV_163_LEFT_1 1 + +MT903345 196402 196424 MPXV_163_RIGHT_1 1 - diff --git a/schemes/niv/nipah/400/v1.0.0/info.yml b/schemes/niv/nipah/400/v1.0.0/info.yml new file mode 100644 index 0000000..de1f626 --- /dev/null +++ b/schemes/niv/nipah/400/v1.0.0/info.yml @@ -0,0 +1,12 @@ +schema_version: 1.0.0a +organism: niv +name: nipah +amplicon_size: 400 +version: v1.0.0 +developers: +- ARTIC network +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/niv/nipah/400/v1.0.0 +source_url: https://github.com/artic-network/primer-schemes/tree/master/Nipah/V1 +license: CC-BY-SA-4.0 +primer_checksum: primaschema:6cc114b4202f2a28 +reference_checksum: primaschema:93e763381bcf23c8 diff --git a/schemes/niv/nipah/400/v1.0.0/primer.bed b/schemes/niv/nipah/400/v1.0.0/primer.bed new file mode 100644 index 0000000..17676fa --- /dev/null +++ b/schemes/niv/nipah/400/v1.0.0/primer.bed @@ -0,0 +1,120 @@ +AJ564622.1 1 27 NIV_1_LEFT_1 1 + CCAAACAAGGGAGAATATGGATACGT +AJ564622.1 378 401 NIV_1_RIGHT_1 1 - TGTCTGGGTCATTGAGGAGACTT +AJ564622.1 319 341 NIV_2_LEFT_1 2 + GTTGGAGCTGCTTTCACACTCA +AJ564622.1 702 726 NIV_2_RIGHT_1 2 - GGATTGACTCTCTTTTGTTGGACG +AJ564622.1 640 662 NIV_3_LEFT_1 1 + GCTAAAGCAGTTACAGCTCCCG +AJ564622.1 1004 1028 NIV_3_RIGHT_1 1 - GGCCAATTTCTCTGTAGAGTAGCA +AJ564622.1 943 965 NIV_4_LEFT_1 2 + AGGTATCCAGCACTTGCACTCA +AJ564622.1 1308 1330 NIV_4_RIGHT_1 2 - ACTCTCTTGCCTTCCTGCTGAT +AJ564622.1 1239 1263 NIV_5_LEFT_1 1 + GAACATGGCAAATAGACTGGGACT +AJ564622.1 1617 1639 NIV_5_RIGHT_1 1 - TTCCCCTTGAGTTCTGTTGCTG +AJ564622.1 1545 1567 NIV_6_LEFT_1 2 + CCTCAGATCAAGACTGGCTGCA +AJ564622.1 1900 1929 NIV_6_RIGHT_1 2 - ACACTAATAGTTCAAGATTTTGAGCAAGT +AJ564622.1 1840 1862 NIV_7_LEFT_1 1 + ATGGGCAAACCGAAGAACCAAT +AJ564622.1 2212 2234 NIV_7_RIGHT_1 1 - AGATTGCAGTTCACTTGTGCGA +AJ564622.1 2179 2204 NIV_8_LEFT_1 2 + CACTTAACTTGACCAAGGTCTACCA +AJ564622.1 2538 2560 NIV_8_RIGHT_1 2 - GTGCACTGCAGAAAATCTTCCC +AJ564622.1 2477 2501 NIV_9_LEFT_1 1 + CAGAAGACATACGGACGATCAAGT +AJ564622.1 2831 2857 NIV_9_RIGHT_1 1 - ACAAGACATACATTCCCATTGTTTGC +AJ564622.1 2798 2820 NIV_10_LEFT_1 2 + CCTGAGAGAGGGTGGAGTGATT +AJ564622.1 3156 3179 NIV_10_RIGHT_1 2 - TGAGCTTCCTGCAAACTCATCTT +AJ564622.1 3113 3138 NIV_11_LEFT_1 1 + TTGTACACATCAGATGACGAAGAGG +AJ564622.1 3471 3493 NIV_11_RIGHT_1 1 - GGAGGCTGAGCATCTTTCCCTT +AJ564622.1 3435 3457 NIV_12_LEFT_1 2 + AGCTGCTGAAGGAGAACTCACT +AJ564622.1 3795 3817 NIV_12_RIGHT_1 2 - TCGTTGTCGTCTACGGGGTTTA +AJ564622.1 3718 3740 NIV_13_LEFT_1 1 + AGAAGGCAAGAGTGTCAATGCG +AJ564622.1 4089 4111 NIV_13_RIGHT_1 1 - CCTTCAATGGTTGAGAGTGCGG +AJ564622.1 4008 4037 NIV_14_LEFT_1 2 + ACATTGAAGAACAAGTTAAAGAGATCCCA +AJ564622.1 4364 4388 NIV_14_RIGHT_1 2 - TCTGGATGAATCATCTGCCATAGG +AJ564622.1 4283 4305 NIV_15_LEFT_1 1 + TATGGGGCAGCTGTACAGTTGA +AJ564622.1 4652 4674 NIV_15_RIGHT_1 1 - TGTGTTATCGTCTGAGGGCTGG +AJ564622.1 4571 4596 NIV_16_LEFT_1 2 + ACAATCTCCCACAAGTAGACAATGG +AJ564622.1 4924 4951 NIV_16_RIGHT_1 2 - TGCGTGAGAGATCTACAATACAAATCG +AJ564622.1 4878 4907 NIV_17_LEFT_1 1 + ACAATGATGTCAACTTTCATACCTAAACA +AJ564622.1 5246 5269 NIV_17_RIGHT_1 1 - AGCTCCTGGGGTATAGATCTTGT +AJ564622.1 5175 5197 NIV_18_LEFT_1 2 + TTGGGAGCATGGTGGGTATCTT +AJ564622.1 5567 5589 NIV_18_RIGHT_1 2 - TCAACGTTCCGACAAACCTTGA +AJ564622.1 5500 5522 NIV_19_LEFT_1 1 + TCTGGCCCTCTAAATCACCTCG +AJ564622.1 5873 5901 NIV_19_RIGHT_1 1 - TGCAATTTCATCCTATCAATCTTCCTCC +AJ564622.1 5792 5814 NIV_20_LEFT_1 2 + GCTTCAAGGTTGCCTCCTTCAT +AJ564622.1 6145 6172 NIV_20_RIGHT_1 2 - TTCTGTTTAGCCCTTTAGAATTCTCCC +AJ564622.1 6081 6103 NIV_21_LEFT_1 1 + TGTGTTGCAGCCTTCTATTCCA +AJ564622.1 6462 6487 NIV_21_RIGHT_1 1 - AAACCAGGAATTTCTTTGCCTTTCA +AJ564622.1 6403 6429 NIV_22_LEFT_1 2 + ACAAGCATTCTTACCATTGGATCAAC +AJ564622.1 6760 6785 NIV_22_RIGHT_1 2 - TCTTGTTACTCCTTTGACAAGTCCA +AJ564622.1 6711 6733 NIV_23_LEFT_1 1 + TCTCGGAGTGTAGTGTTGGGAT +AJ564622.1 7072 7097 NIV_23_RIGHT_1 1 - TTTGAGTTTGTTGATGTTGTCAGCA +AJ564622.1 7026 7048 NIV_24_LEFT_1 2 + CAGCTCAAATCACTGCAGGTGT +AJ564622.1 7385 7409 NIV_24_RIGHT_1 2 - GTCTTCTGTAGCGTAACCCAATGT +AJ564622.1 7346 7368 NIV_25_LEFT_1 1 + TCTCAGGCATTCGGTGGAAATT +AJ564622.1 7708 7733 NIV_25_RIGHT_1 1 - AGTCGATCCCGTTAAACATTCTCTC +AJ564622.1 7660 7682 NIV_26_LEFT_1 2 + GAGCGTGATCTGCAACCAAGAT +AJ564622.1 8027 8052 NIV_26_RIGHT_1 2 - AGGACTGATTCATGCTGGATATCTG +AJ564622.1 7932 7956 NIV_27_LEFT_1 1 + TCAGCTTAGGGAAATATCTGGGGT +AJ564622.1 8284 8312 NIV_27_RIGHT_1 1 - TTCATCAATCTGAATACACTATGTCCCA +AJ564622.1 8244 8267 NIV_28_LEFT_1 2 + GGAGAGTCAGACCTACAAGCAGT +AJ564622.1 8604 8632 NIV_28_RIGHT_1 2 - ATTTTCTTGGTCGAAATGCTATTGTAGT +AJ564622.1 8503 8526 NIV_29_LEFT_1 1 + ACACGAGCGCTAACCTATACACT +AJ564622.1 8869 8893 NIV_29_RIGHT_1 1 - ACGTCAACAATACTTTCCTTCCCC +AJ564622.1 8821 8850 NIV_30_LEFT_1 2 + TCCTATAATCACATCATAGGAGTGAACCA +AJ564622.1 9191 9213 NIV_30_RIGHT_1 2 - GGATACCCTGCAACGCATCTTT +AJ564622.1 9150 9178 NIV_31_LEFT_1 1 + TCCAAAATTACACAAGATCAACAGACAA +AJ564622.1 9506 9531 NIV_31_RIGHT_1 1 - TCTGATTAGATGTCTTTTGCAGGCA +AJ564622.1 9460 9482 NIV_32_LEFT_1 2 + ACAGACAGAAGGGGTGAGCAAT +AJ564622.1 9829 9851 NIV_32_RIGHT_1 2 - AGGGTCTCCAACAGTTGACACT +AJ564622.1 9751 9773 NIV_33_LEFT_1 1 + CTGGACCCCACCAAATCCAAAC +AJ564622.1 10124 10148 NIV_33_RIGHT_1 1 - TCTAATCCCCATAGATAGCCTGCA +AJ564622.1 10075 10100 NIV_34_LEFT_1 2 + TGATTCAAATTGTCCCATCACGAAG +AJ564622.1 10441 10463 NIV_34_RIGHT_1 2 - AACTCCTTCCCAGCAGATCTCT +AJ564622.1 10384 10408 NIV_35_LEFT_1 1 + TAACACGGTAATATCAAGACCCGG +AJ564622.1 10735 10764 NIV_35_RIGHT_1 1 - ATGAGGTTGATTTTTATGTACATTGCTCT +AJ564622.1 10671 10698 NIV_36_LEFT_1 2 + TGGTTGAGATATATGACACAGGAGACA +AJ564622.1 11029 11052 NIV_36_RIGHT_1 2 - TCGGGCCGAAAATACTAAGTCTC +AJ564622.1 10940 10965 NIV_37_LEFT_1 1 + TCTTGATCGGTGATCTTTGAGAACA +AJ564622.1 11308 11333 NIV_37_RIGHT_1 1 - GGTAACAACGCTTTCAGTCTATGGT +AJ564622.1 11261 11283 NIV_38_LEFT_1 2 + ACCCAGGTCCTTGATTATGCCA +AJ564622.1 11614 11644 NIV_38_RIGHT_1 2 - TTTATGTTGTTTCTAATGTAATCACCCTGT +AJ564622.1 11525 11550 NIV_39_LEFT_1 1 + CAGCCCAGTGATGATAAAAGACTGT +AJ564622.1 11881 11910 NIV_39_RIGHT_1 1 - ACCATTTAGATTGACTCATATTCTTCCCT +AJ564622.1 11788 11813 NIV_40_LEFT_1 2 + TGGGATGCTGCAAAATATCACTAGA +AJ564622.1 12151 12175 NIV_40_RIGHT_1 2 - TCCGATTTGACTGTTGTCTCCATC +AJ564622.1 12097 12123 NIV_41_LEFT_1 1 + TCTTACACCCGAAATGGTTCTAATGT +AJ564622.1 12469 12494 NIV_41_RIGHT_1 1 - ACGAAAGAAAGAAAAGAACTCTGCC +AJ564622.1 12378 12403 NIV_42_LEFT_1 2 + TGAGTGAGTGTGGTTTTACAGATCA +AJ564622.1 12749 12773 NIV_42_RIGHT_1 2 - TTGAATCCCACAGAATGATTCCCA +AJ564622.1 12712 12737 NIV_43_LEFT_1 1 + TGGGGAATCTTTGACCATTGATGAC +AJ564622.1 13074 13097 NIV_43_RIGHT_1 1 - TGCACGCATTTTGTAGGTCATCT +AJ564622.1 13029 13053 NIV_44_LEFT_1 2 + GCTTGAAGGAGAAAGAGACGAAGC +AJ564622.1 13384 13409 NIV_44_RIGHT_1 2 - TCGTGTATTGGGTGACATGTTATGA +AJ564622.1 13346 13368 NIV_45_LEFT_1 1 + TCTGCTCTCAATAATCCGTGCC +AJ564622.1 13704 13726 NIV_45_RIGHT_1 1 - GGGCAATTAGGGTCTGCAACAT +AJ564622.1 13670 13694 NIV_46_LEFT_1 2 + TGGATGCACAAACGACTAGAAAGA +AJ564622.1 14028 14051 NIV_46_RIGHT_1 2 - TGTAGCTTTAAGATTGTGGCCGA +AJ564622.1 13968 13990 NIV_47_LEFT_1 1 + AGATCTGTGCAAAGCAAGCTCA +AJ564622.1 14325 14348 NIV_47_RIGHT_1 1 - AATGGGAGATGTCACATCCAGTG +AJ564622.1 14279 14304 NIV_48_LEFT_1 2 + CAGCAGCTTCTCATATCAACTGAGT +AJ564622.1 14651 14673 NIV_48_RIGHT_1 2 - TTGGGTTCGGTGAGTTCCTCAG +AJ564622.1 14595 14617 NIV_49_LEFT_1 1 + TGCCTGACTCACAAAGCATCAC +AJ564622.1 14946 14976 NIV_49_RIGHT_1 1 - TTGATGATATCAAGTCATTTTGTCTTCTGT +AJ564622.1 14864 14888 NIV_50_LEFT_1 2 + AGTGGACTTCAGCCAAAGTTAGTT +AJ564622.1 15228 15253 NIV_50_RIGHT_1 2 - TCCGATCTTTCATCCGTACTTGATC +AJ564622.1 15148 15171 NIV_51_LEFT_1 1 + TGGGTGGTTCTTTGTACCTAGGG +AJ564622.1 15534 15562 NIV_51_RIGHT_1 1 - TCTCCCTCAATTCTGAAATCTAGATTGT +AJ564622.1 15484 15506 NIV_52_LEFT_1 2 + TGCAGGGAGTGTACTCAACAGA +AJ564622.1 15855 15881 NIV_52_RIGHT_1 2 - TTCCTCAGTTGACCATAAAGGAAAGT +AJ564622.1 15784 15806 NIV_53_LEFT_1 1 + TGATCCAGACCCCGTTTCAGAA +AJ564622.1 16173 16196 NIV_53_RIGHT_1 1 - AGGATGTGACAAGGCATTTGACA +AJ564622.1 16102 16126 NIV_54_LEFT_1 2 + AGGAAGACATACTATGGTCGACCT +AJ564622.1 16455 16483 NIV_54_RIGHT_1 2 - TGTGGGTTTAGATCTATTATCCAAGGAG +AJ564622.1 16403 16433 NIV_55_LEFT_1 1 + ACATCCAAACATCTCTGTGTTATAATTGAC +AJ564622.1 16758 16784 NIV_55_RIGHT_1 1 - TGCTGATTTTGTGTTCATAGACAGGA +AJ564622.1 16709 16733 NIV_56_LEFT_1 2 + ACAGGAGTGTTAGACATCAGAGGT +AJ564622.1 17077 17099 NIV_56_RIGHT_1 2 - CGTCAGAGATGGGTCTTCCTCA +AJ564622.1 17033 17061 NIV_57_LEFT_1 1 + GGTCAAAGAGAACTGAAACTATTTCCCT +AJ564622.1 17399 17422 NIV_57_RIGHT_1 1 - GGGAAACACACCAGTACTAGTCC +AJ564622.1 17340 17362 NIV_58_LEFT_1 2 + TAGCATACACCCCTGGATTCCC +AJ564622.1 17701 17726 NIV_58_RIGHT_1 2 - TTCACTCTTAAGAATTTCTGGCCCA +AJ564622.1 17669 17691 NIV_59_LEFT_1 1 + CAAGTACTTCTCCAAGCAGGGC +AJ564622.1 18025 18049 NIV_59_RIGHT_1 1 - CTTCTCTCTTGCATCCCTTTAGGT +AJ564622.1 17814 17836 NIV_60_LEFT_1 2 + ACAGATCACCTTCACACCACCT +AJ564622.1 18166 18196 NIV_60_RIGHT_1 2 - ACCTTAGATCAACATAAGTTATCAGTTGGT diff --git a/schemes/niv/nipah/400/v1.0.0/primer.svg b/schemes/niv/nipah/400/v1.0.0/primer.svg new file mode 100644 index 0000000..0d1d3e7 --- /dev/null +++ b/schemes/niv/nipah/400/v1.0.0/primer.svg @@ -0,0 +1 @@ +12pool01,0002,0003,0004,0005,0006,0007,0008,0009,00010,00011,00012,00013,00014,00015,00016,00017,00018,00019,00020,000AJ564622.1+-strand \ No newline at end of file diff --git a/niv/nipah/v1/reference.fasta b/schemes/niv/nipah/400/v1.0.0/reference.fasta similarity index 99% rename from niv/nipah/v1/reference.fasta rename to schemes/niv/nipah/400/v1.0.0/reference.fasta index de0fb4e..c25ec99 100644 --- a/niv/nipah/v1/reference.fasta +++ b/schemes/niv/nipah/400/v1.0.0/reference.fasta @@ -1,4 +1,4 @@ ->NiV|AJ564622|NV/MY/99/VRI-1413|pig|Malaysia|||1999 +>AJ564622.1 ACCAAACAAGGGAGAATATGGATACGTTAAAATATATAACGTATTTTTAAAACTTAGGAA CCAAGACAAACACTTTTGGTCTTGGTATTGGATCCTCAAGAAATATATCATCATGAGTGA TATCTTTGAAGAGGCGGCTAGTTTTAGGAGTTATCAATCTAAGTTAGGGAGAGATGGGAG diff --git a/schemes/niv/nipah/400/v1.0.0/scheme.bed b/schemes/niv/nipah/400/v1.0.0/scheme.bed new file mode 100644 index 0000000..f0dde9f --- /dev/null +++ b/schemes/niv/nipah/400/v1.0.0/scheme.bed @@ -0,0 +1,120 @@ +AJ564622.1 1 27 NIV_1_LEFT_1 1 + +AJ564622.1 378 401 NIV_1_RIGHT_1 1 - +AJ564622.1 319 341 NIV_2_LEFT_1 2 + +AJ564622.1 702 726 NIV_2_RIGHT_1 2 - +AJ564622.1 640 662 NIV_3_LEFT_1 1 + +AJ564622.1 1004 1028 NIV_3_RIGHT_1 1 - +AJ564622.1 943 965 NIV_4_LEFT_1 2 + +AJ564622.1 1308 1330 NIV_4_RIGHT_1 2 - +AJ564622.1 1239 1263 NIV_5_LEFT_1 1 + +AJ564622.1 1617 1639 NIV_5_RIGHT_1 1 - +AJ564622.1 1545 1567 NIV_6_LEFT_1 2 + +AJ564622.1 1900 1929 NIV_6_RIGHT_1 2 - +AJ564622.1 1840 1862 NIV_7_LEFT_1 1 + +AJ564622.1 2212 2234 NIV_7_RIGHT_1 1 - +AJ564622.1 2179 2204 NIV_8_LEFT_1 2 + +AJ564622.1 2538 2560 NIV_8_RIGHT_1 2 - +AJ564622.1 2477 2501 NIV_9_LEFT_1 1 + +AJ564622.1 2831 2857 NIV_9_RIGHT_1 1 - +AJ564622.1 2798 2820 NIV_10_LEFT_1 2 + +AJ564622.1 3156 3179 NIV_10_RIGHT_1 2 - +AJ564622.1 3113 3138 NIV_11_LEFT_1 1 + +AJ564622.1 3471 3493 NIV_11_RIGHT_1 1 - +AJ564622.1 3435 3457 NIV_12_LEFT_1 2 + +AJ564622.1 3795 3817 NIV_12_RIGHT_1 2 - +AJ564622.1 3718 3740 NIV_13_LEFT_1 1 + +AJ564622.1 4089 4111 NIV_13_RIGHT_1 1 - +AJ564622.1 4008 4037 NIV_14_LEFT_1 2 + +AJ564622.1 4364 4388 NIV_14_RIGHT_1 2 - +AJ564622.1 4283 4305 NIV_15_LEFT_1 1 + +AJ564622.1 4652 4674 NIV_15_RIGHT_1 1 - +AJ564622.1 4571 4596 NIV_16_LEFT_1 2 + +AJ564622.1 4924 4951 NIV_16_RIGHT_1 2 - +AJ564622.1 4878 4907 NIV_17_LEFT_1 1 + +AJ564622.1 5246 5269 NIV_17_RIGHT_1 1 - +AJ564622.1 5175 5197 NIV_18_LEFT_1 2 + +AJ564622.1 5567 5589 NIV_18_RIGHT_1 2 - +AJ564622.1 5500 5522 NIV_19_LEFT_1 1 + +AJ564622.1 5873 5901 NIV_19_RIGHT_1 1 - +AJ564622.1 5792 5814 NIV_20_LEFT_1 2 + +AJ564622.1 6145 6172 NIV_20_RIGHT_1 2 - +AJ564622.1 6081 6103 NIV_21_LEFT_1 1 + +AJ564622.1 6462 6487 NIV_21_RIGHT_1 1 - +AJ564622.1 6403 6429 NIV_22_LEFT_1 2 + +AJ564622.1 6760 6785 NIV_22_RIGHT_1 2 - +AJ564622.1 6711 6733 NIV_23_LEFT_1 1 + +AJ564622.1 7072 7097 NIV_23_RIGHT_1 1 - +AJ564622.1 7026 7048 NIV_24_LEFT_1 2 + +AJ564622.1 7385 7409 NIV_24_RIGHT_1 2 - +AJ564622.1 7346 7368 NIV_25_LEFT_1 1 + +AJ564622.1 7708 7733 NIV_25_RIGHT_1 1 - +AJ564622.1 7660 7682 NIV_26_LEFT_1 2 + +AJ564622.1 8027 8052 NIV_26_RIGHT_1 2 - +AJ564622.1 7932 7956 NIV_27_LEFT_1 1 + +AJ564622.1 8284 8312 NIV_27_RIGHT_1 1 - +AJ564622.1 8244 8267 NIV_28_LEFT_1 2 + +AJ564622.1 8604 8632 NIV_28_RIGHT_1 2 - +AJ564622.1 8503 8526 NIV_29_LEFT_1 1 + +AJ564622.1 8869 8893 NIV_29_RIGHT_1 1 - +AJ564622.1 8821 8850 NIV_30_LEFT_1 2 + +AJ564622.1 9191 9213 NIV_30_RIGHT_1 2 - +AJ564622.1 9150 9178 NIV_31_LEFT_1 1 + +AJ564622.1 9506 9531 NIV_31_RIGHT_1 1 - +AJ564622.1 9460 9482 NIV_32_LEFT_1 2 + +AJ564622.1 9829 9851 NIV_32_RIGHT_1 2 - +AJ564622.1 9751 9773 NIV_33_LEFT_1 1 + +AJ564622.1 10124 10148 NIV_33_RIGHT_1 1 - +AJ564622.1 10075 10100 NIV_34_LEFT_1 2 + +AJ564622.1 10441 10463 NIV_34_RIGHT_1 2 - +AJ564622.1 10384 10408 NIV_35_LEFT_1 1 + +AJ564622.1 10735 10764 NIV_35_RIGHT_1 1 - +AJ564622.1 10671 10698 NIV_36_LEFT_1 2 + +AJ564622.1 11029 11052 NIV_36_RIGHT_1 2 - +AJ564622.1 10940 10965 NIV_37_LEFT_1 1 + +AJ564622.1 11308 11333 NIV_37_RIGHT_1 1 - +AJ564622.1 11261 11283 NIV_38_LEFT_1 2 + +AJ564622.1 11614 11644 NIV_38_RIGHT_1 2 - +AJ564622.1 11525 11550 NIV_39_LEFT_1 1 + +AJ564622.1 11881 11910 NIV_39_RIGHT_1 1 - +AJ564622.1 11788 11813 NIV_40_LEFT_1 2 + +AJ564622.1 12151 12175 NIV_40_RIGHT_1 2 - +AJ564622.1 12097 12123 NIV_41_LEFT_1 1 + +AJ564622.1 12469 12494 NIV_41_RIGHT_1 1 - +AJ564622.1 12378 12403 NIV_42_LEFT_1 2 + +AJ564622.1 12749 12773 NIV_42_RIGHT_1 2 - +AJ564622.1 12712 12737 NIV_43_LEFT_1 1 + +AJ564622.1 13074 13097 NIV_43_RIGHT_1 1 - +AJ564622.1 13029 13053 NIV_44_LEFT_1 2 + +AJ564622.1 13384 13409 NIV_44_RIGHT_1 2 - +AJ564622.1 13346 13368 NIV_45_LEFT_1 1 + +AJ564622.1 13704 13726 NIV_45_RIGHT_1 1 - +AJ564622.1 13670 13694 NIV_46_LEFT_1 2 + +AJ564622.1 14028 14051 NIV_46_RIGHT_1 2 - +AJ564622.1 13968 13990 NIV_47_LEFT_1 1 + +AJ564622.1 14325 14348 NIV_47_RIGHT_1 1 - +AJ564622.1 14279 14304 NIV_48_LEFT_1 2 + +AJ564622.1 14651 14673 NIV_48_RIGHT_1 2 - +AJ564622.1 14595 14617 NIV_49_LEFT_1 1 + +AJ564622.1 14946 14976 NIV_49_RIGHT_1 1 - +AJ564622.1 14864 14888 NIV_50_LEFT_1 2 + +AJ564622.1 15228 15253 NIV_50_RIGHT_1 2 - +AJ564622.1 15148 15171 NIV_51_LEFT_1 1 + +AJ564622.1 15534 15562 NIV_51_RIGHT_1 1 - +AJ564622.1 15484 15506 NIV_52_LEFT_1 2 + +AJ564622.1 15855 15881 NIV_52_RIGHT_1 2 - +AJ564622.1 15784 15806 NIV_53_LEFT_1 1 + +AJ564622.1 16173 16196 NIV_53_RIGHT_1 1 - +AJ564622.1 16102 16126 NIV_54_LEFT_1 2 + +AJ564622.1 16455 16483 NIV_54_RIGHT_1 2 - +AJ564622.1 16403 16433 NIV_55_LEFT_1 1 + +AJ564622.1 16758 16784 NIV_55_RIGHT_1 1 - +AJ564622.1 16709 16733 NIV_56_LEFT_1 2 + +AJ564622.1 17077 17099 NIV_56_RIGHT_1 2 - +AJ564622.1 17033 17061 NIV_57_LEFT_1 1 + +AJ564622.1 17399 17422 NIV_57_RIGHT_1 1 - +AJ564622.1 17340 17362 NIV_58_LEFT_1 2 + +AJ564622.1 17701 17726 NIV_58_RIGHT_1 2 - +AJ564622.1 17669 17691 NIV_59_LEFT_1 1 + +AJ564622.1 18025 18049 NIV_59_RIGHT_1 1 - +AJ564622.1 17814 17836 NIV_60_LEFT_1 2 + +AJ564622.1 18166 18196 NIV_60_RIGHT_1 2 - diff --git a/schemes/sars-cov-2/artic/400/v1.0.0/info.yml b/schemes/sars-cov-2/artic/400/v1.0.0/info.yml new file mode 100644 index 0000000..bc06394 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v1.0.0/info.yml @@ -0,0 +1,17 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: artic +amplicon_size: 400 +version: v1.0.0 +aliases: +- ARTIC/V1 +developers: +- ARTIC network +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v1 +source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v1.0.0 +citations: +- https://doi.org/10.1101%2F2020.09.04.283077 +license: CC-BY-SA-4.0 +primer_checksum: primaschema:05eb8ddabe9d83d5 +reference_checksum: primaschema:b1acd7163146bf17 +status: DEPRECATED diff --git a/schemes/sars-cov-2/artic/400/v1.0.0/primer.bed b/schemes/sars-cov-2/artic/400/v1.0.0/primer.bed new file mode 100644 index 0000000..e8e01e2 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v1.0.0/primer.bed @@ -0,0 +1,196 @@ +MN908947.3 30 54 nCoV-2019_1_LEFT_1 1 + ACCAACCAACTTTCGATCTCTTGT +MN908947.3 385 410 nCoV-2019_1_RIGHT_1 1 - CATCTTTAAGATGTTGACGTGCCTC +MN908947.3 320 342 nCoV-2019_2_LEFT_1 2 + CTGTTTTACAGGTTCGCGACGT +MN908947.3 704 726 nCoV-2019_2_RIGHT_1 2 - TAAGGATCAGTGCCAAGCTCGT +MN908947.3 642 664 nCoV-2019_3_LEFT_1 1 + CGGTAATAAAGGAGCTGGTGGC +MN908947.3 1004 1028 nCoV-2019_3_RIGHT_1 1 - AAGGTGTCTGCAATTCATAGCTCT +MN908947.3 943 965 nCoV-2019_4_LEFT_1 2 + GGTGTATACTGCTGCCGTGAAC +MN908947.3 1312 1337 nCoV-2019_4_RIGHT_1 2 - CACAAGTAGTGGCACCTTCTTTAGT +MN908947.3 1242 1264 nCoV-2019_5_LEFT_1 1 + TGGTGAAACTTCATGGCAGACG +MN908947.3 1623 1651 nCoV-2019_5_RIGHT_1 1 - ATTGATGTTGACTTTCTCTTTTTGGAGT +MN908947.3 1573 1595 nCoV-2019_6_LEFT_1 2 + GGTGTTGTTGGAGAAGGTTCCG +MN908947.3 1942 1964 nCoV-2019_6_RIGHT_1 2 - TAGCGGCCTTCTGTAAAACACG +MN908947.3 1875 1897 nCoV-2019_7_LEFT_1 1 + ATCAGAGGCTGCTCGTGTTGTA +MN908947.3 2247 2269 nCoV-2019_7_RIGHT_1 1 - TGCACAGGTGACAATTTGTCCA +MN908947.3 2181 2205 nCoV-2019_8_LEFT_1 2 + AGAGTTTCTTAGAGACGGTTGGGA +MN908947.3 2568 2592 nCoV-2019_8_RIGHT_1 2 - GCTTCAACAGCTTCACTAGTAGGT +MN908947.3 2505 2529 nCoV-2019_9_LEFT_1 1 + TCCCACAGAAGTGTTAACAGAGGA +MN908947.3 2882 2904 nCoV-2019_9_RIGHT_1 1 - ATGACAGCATCTGCCACAACAC +MN908947.3 2826 2850 nCoV-2019_10_LEFT_1 2 + TGAGAAGTGCTCTGCCTATACAGT +MN908947.3 3183 3210 nCoV-2019_10_RIGHT_1 2 - TCATCTAACCAATCTTCTTCTTGCTCT +MN908947.3 3144 3166 nCoV-2019_11_LEFT_1 1 + GGAATTTGGTGCCACTTCTGCT +MN908947.3 3507 3531 nCoV-2019_11_RIGHT_1 1 - TCATCAGATTCAACTTGCATGGCA +MN908947.3 3460 3482 nCoV-2019_12_LEFT_1 2 + AAACATGGAGGAGGTGTTGCAG +MN908947.3 3826 3853 nCoV-2019_12_RIGHT_1 2 - TTCACTCTTCATTTCCAAAAAGCTTGA +MN908947.3 3771 3795 nCoV-2019_13_LEFT_1 1 + TCGCACAAATGTCTACTTAGCTGT +MN908947.3 4142 4164 nCoV-2019_13_RIGHT_1 1 - ACCACAGCAGTTAAAACACCCT +MN908947.3 4054 4077 nCoV-2019_14_LEFT_1 2 + CATCCAGATTCTGCCACTCTTGT +MN908947.3 4428 4450 nCoV-2019_14_RIGHT_1 2 - AGTTTCCACACAGACAGGCATT +MN908947.3 4294 4321 nCoV-2019_15_LEFT_1 1 + ACAGTGCTTAAAAAGTGTAAAAGTGCC +MN908947.3 4674 4696 nCoV-2019_15_RIGHT_1 1 - AACAGAAACTGTAGCTGGCACT +MN908947.3 4636 4658 nCoV-2019_16_LEFT_1 2 + AATTTGGAAGAAGCTGCTCGGT +MN908947.3 4995 5017 nCoV-2019_16_RIGHT_1 2 - CACAACTTGCGTGTGGAGGTTA +MN908947.3 4939 4966 nCoV-2019_17_LEFT_1 1 + CTTCTTTCTTTGAGAGAAGTGAGGACT +MN908947.3 5296 5321 nCoV-2019_17_RIGHT_1 1 - TTTGTTGGAGTGTTAACAATGCAGT +MN908947.3 5230 5259 nCoV-2019_18_LEFT_1 2 + TGGAAATACCCACAAGTTAATGGTTTAAC +MN908947.3 5620 5644 nCoV-2019_18_RIGHT_1 2 - AGCTTGTTTACCACACGTACAAGG +MN908947.3 5563 5586 nCoV-2019_19_LEFT_1 1 + GCTGTTATGTACATGGGCACACT +MN908947.3 5932 5957 nCoV-2019_19_RIGHT_1 1 - TGTCCAACTTAGGGTCAATTTCTGT +MN908947.3 5867 5894 nCoV-2019_20_LEFT_1 2 + ACAAAGAAAACAGTTACACAACAACCA +MN908947.3 6247 6272 nCoV-2019_20_RIGHT_1 2 - ACGTGGCTTTATTAGTTGCATTGTT +MN908947.3 6167 6196 nCoV-2019_21_LEFT_1 1 + TGGCTATTGATTATAAACACTACACACCC +MN908947.3 6528 6550 nCoV-2019_21_RIGHT_1 1 - TAGATCTGTGTGGCCAACCTCT +MN908947.3 6466 6495 nCoV-2019_22_LEFT_1 2 + ACTACCGAAGTTGTAGGAGACATTATACT +MN908947.3 6846 6873 nCoV-2019_22_RIGHT_1 2 - ACAGTATTCTTTGCTATAGTAGTCGGC +MN908947.3 6718 6745 nCoV-2019_23_LEFT_1 1 + ACAACTACTAACATAGTTACACGGTGT +MN908947.3 7092 7117 nCoV-2019_23_RIGHT_1 1 - ACCAGTACAGTAGGTTGCAATAGTG +MN908947.3 7035 7058 nCoV-2019_24_LEFT_1 2 + AGGCATGCCTTCTTACTGTACTG +MN908947.3 7389 7415 nCoV-2019_24_RIGHT_1 2 - ACATTCTAACCATAGCTGAAATCGGG +MN908947.3 7305 7332 nCoV-2019_25_LEFT_1 1 + GCAATTGTTTTTCAGCTATTTTGCAGT +MN908947.3 7671 7694 nCoV-2019_25_RIGHT_1 1 - ACTGTAGTGACAAGTCTCTCGCA +MN908947.3 7626 7651 nCoV-2019_26_LEFT_1 2 + TTGTGATACATTCTGTGCTGGTAGT +MN908947.3 7997 8019 nCoV-2019_26_RIGHT_1 2 - TCCGCACTATCACCAACATCAG +MN908947.3 7943 7968 nCoV-2019_27_LEFT_1 1 + ACTACAGTCAGCTTATGTGTCAACC +MN908947.3 8319 8341 nCoV-2019_27_RIGHT_1 1 - AATACAAGCACCAAGGTCACGG +MN908947.3 8249 8275 nCoV-2019_28_LEFT_1 2 + ACATAGAAGTTACTGGCGATAGTTGT +MN908947.3 8635 8661 nCoV-2019_28_RIGHT_1 2 - TGTTTAGACATGACATGAACAGGTGT +MN908947.3 8595 8619 nCoV-2019_29_LEFT_1 1 + ACTTGTGTTCCTTTTTGTTGCTGC +MN908947.3 8954 8983 nCoV-2019_29_RIGHT_1 1 - AGTGTACTCTATAAGTTTTGATGGTGTGT +MN908947.3 8888 8913 nCoV-2019_30_LEFT_1 2 + GCACAACTAATGGTGACTTTTTGCA +MN908947.3 9245 9271 nCoV-2019_30_RIGHT_1 2 - ACCACTAGTAGATACACAAACACCAG +MN908947.3 9204 9226 nCoV-2019_31_LEFT_1 1 + TTCTGAGTACTGTAGGCACGGC +MN908947.3 9557 9585 nCoV-2019_31_RIGHT_1 1 - ACAGAATAAACACCAGGTAAGAATGAGT +MN908947.3 9477 9502 nCoV-2019_32_LEFT_1 2 + TGGTGAATACAGTCATGTAGTTGCC +MN908947.3 9834 9858 nCoV-2019_32_RIGHT_1 2 - AGCACATCACTACGCAACTTTAGA +MN908947.3 9784 9806 nCoV-2019_33_LEFT_1 1 + ACTTTTGAAGAAGCTGCGCTGT +MN908947.3 10146 10171 nCoV-2019_33_RIGHT_1 1 - TGGACAGTAAACTACGTCATCAAGC +MN908947.3 10076 10099 nCoV-2019_34_LEFT_1 2 + TCCCATCTGGTAAAGTTGAGGGT +MN908947.3 10437 10459 nCoV-2019_34_RIGHT_1 2 - AGTGAAATTGGGCCTCATAGCA +MN908947.3 10362 10384 nCoV-2019_35_LEFT_1 1 + TGTTCGCATTCAACCAGGACAG +MN908947.3 10737 10763 nCoV-2019_35_RIGHT_1 1 - ACTTCATAGCCACAAGGTTAAAGTCA +MN908947.3 10666 10688 nCoV-2019_36_LEFT_1 2 + TTAGCTTGGTTGTACGCTGCTG +MN908947.3 11048 11074 nCoV-2019_36_RIGHT_1 2 - GAACAAAGACCATTGAGTACTCTGGA +MN908947.3 10999 11022 nCoV-2019_37_LEFT_1 1 + ACACACCACTGGTTGTTACTCAC +MN908947.3 11372 11394 nCoV-2019_37_RIGHT_1 1 - GTCCACACTCTCCTAGCACCAT +MN908947.3 11306 11331 nCoV-2019_38_LEFT_1 2 + ACTGTGTTATGTATGCATCAGCTGT +MN908947.3 11668 11693 nCoV-2019_38_RIGHT_1 2 - CACCAAGAGTCAGTCTAAAGTAGCG +MN908947.3 11555 11584 nCoV-2019_39_LEFT_1 1 + AGTATTGCCCTATTTTCTTCATAACTGGT +MN908947.3 11927 11949 nCoV-2019_39_RIGHT_1 1 - TGTAACTGGACACATTGAGCCC +MN908947.3 11863 11889 nCoV-2019_40_LEFT_1 2 + TGCACATCAGTAGTCTTACTCTCAGT +MN908947.3 12234 12256 nCoV-2019_40_RIGHT_1 2 - CATGGCTGCATCACGGTCAAAT +MN908947.3 12110 12133 nCoV-2019_41_LEFT_1 1 + GTTCCCTTCCATCATATGCAGCT +MN908947.3 12465 12490 nCoV-2019_41_RIGHT_1 1 - TGGTATGACAACCATTAGTTTGGCT +MN908947.3 12417 12439 nCoV-2019_42_LEFT_1 2 + TGCAAGAGATGGTTGTGTTCCC +MN908947.3 12779 12802 nCoV-2019_42_RIGHT_1 2 - CCTACCTCCCTTTGTTGTGTTGT +MN908947.3 12710 12732 nCoV-2019_43_LEFT_1 1 + TACGACAGATGTCTTGTGCTGC +MN908947.3 13074 13096 nCoV-2019_43_RIGHT_1 1 - AGCAGCATCTACAGCAAAAGCA +MN908947.3 13005 13027 nCoV-2019_44_LEFT_1 2 + TGCCACAGTACGTCTACAAGCT +MN908947.3 13378 13400 nCoV-2019_44_RIGHT_1 2 - AACCTTTCCACATACCGCAGAC +MN908947.3 13319 13344 nCoV-2019_45_LEFT_1 1 + TACCTACAACTTGTGCTAATGACCC +MN908947.3 13669 13699 nCoV-2019_45_RIGHT_1 1 - AAATTGTTTCTTCATGTTGGTAGTTAGAGA +MN908947.3 13599 13621 nCoV-2019_46_LEFT_1 2 + TGTCGCTTCCAAGAAAAGGACG +MN908947.3 13962 13984 nCoV-2019_46_RIGHT_1 2 - CACGTTCACCTAAGTTGGCGTA +MN908947.3 13918 13946 nCoV-2019_47_LEFT_1 1 + AGGACTGGTATGATTTTGTAGAAAACCC +MN908947.3 14271 14299 nCoV-2019_47_RIGHT_1 1 - AATAACGGTCAAAGAGTTTTAACCTCTC +MN908947.3 14207 14232 nCoV-2019_48_LEFT_1 2 + TGTTGACACTGACTTAACAAAGCCT +MN908947.3 14579 14601 nCoV-2019_48_RIGHT_1 2 - TAGATTACCAGAAGCAGCGTGC +MN908947.3 14545 14570 nCoV-2019_49_LEFT_1 1 + AGGAATTACTTGTGTATGCTGCTGA +MN908947.3 14898 14926 nCoV-2019_49_RIGHT_1 1 - TGACGATGACTTGGTTAGCATTAATACA +MN908947.3 14865 14895 nCoV-2019_50_LEFT_1 2 + GTTGATAAGTACTTTGATTGTTACGATGGT +MN908947.3 15224 15246 nCoV-2019_50_RIGHT_1 2 - TAACATGTTGTGCCAACCACCA +MN908947.3 15171 15193 nCoV-2019_51_LEFT_1 1 + TCAATAGCCGCCACTAGAGGAG +MN908947.3 15538 15560 nCoV-2019_51_RIGHT_1 1 - AGTGCATTAACATTGGCCGTGA +MN908947.3 15481 15503 nCoV-2019_52_LEFT_1 2 + CATCAGGAGATGCCACAACTGC +MN908947.3 15861 15886 nCoV-2019_52_RIGHT_1 2 - GTTGAGAGCAAAATTCATGAGGTCC +MN908947.3 15827 15851 nCoV-2019_53_LEFT_1 1 + AGCAAAATGTTGGACTGAGACTGA +MN908947.3 16186 16209 nCoV-2019_53_RIGHT_1 1 - AGCCTCATAAAACTCAGGTTCCC +MN908947.3 16118 16144 nCoV-2019_54_LEFT_1 2 + TGAGTTAACAGGACACATGTTAGACA +MN908947.3 16485 16510 nCoV-2019_54_RIGHT_1 2 - AACCAAAAACTTGTCCATTAGCACA +MN908947.3 16416 16444 nCoV-2019_55_LEFT_1 1 + ACTCAACTTTACTTAGGAGGTATGAGCT +MN908947.3 16804 16833 nCoV-2019_55_RIGHT_1 1 - GGTGTACTCTCCTATTTGTACTTTACTGT +MN908947.3 16748 16770 nCoV-2019_56_LEFT_1 2 + ACCTAGACCACCACTTAACCGA +MN908947.3 17130 17152 nCoV-2019_56_RIGHT_1 2 - ACACTATGCGAGCAGAAGGGTA +MN908947.3 17065 17087 nCoV-2019_57_LEFT_1 1 + ATTCTACACTCCAGGGACCACC +MN908947.3 17430 17452 nCoV-2019_57_RIGHT_1 1 - GTAATTGAGCAGGGTCGCCAAT +MN908947.3 17381 17406 nCoV-2019_58_LEFT_1 2 + TGATTTGAGTGTTGTCAATGCCAGA +MN908947.3 17738 17761 nCoV-2019_58_RIGHT_1 2 - CTTTTCTCCAAGCAGGGTTACGT +MN908947.3 17674 17697 nCoV-2019_59_LEFT_1 1 + TCACGCATGATGTTTCATCTGCA +MN908947.3 18036 18062 nCoV-2019_59_RIGHT_1 1 - AAGAGTCCTGTTACATTTTCAGCTTG +MN908947.3 17966 17993 nCoV-2019_60_LEFT_1 2 + TGATAGAGACCTTTATGACAAGTTGCA +MN908947.3 18324 18348 nCoV-2019_60_RIGHT_1 2 - GGTACCAACAGCTTCTCTAGTAGC +MN908947.3 18253 18275 nCoV-2019_61_LEFT_1 1 + TGTTTATCACCCGCGAAGAAGC +MN908947.3 18650 18672 nCoV-2019_61_RIGHT_1 1 - ATCACATAGACAACAGGTGCGC +MN908947.3 18596 18618 nCoV-2019_62_LEFT_1 2 + GGCACATGGCTTTGAGTTGACA +MN908947.3 18957 18979 nCoV-2019_62_RIGHT_1 2 - GTTGAACCTTTCTACAAGCCGC +MN908947.3 18896 18918 nCoV-2019_63_LEFT_1 1 + TGTTAAGCGTGTTGACTGGACT +MN908947.3 19275 19297 nCoV-2019_63_RIGHT_1 1 - ACAAACTGCCACCATCACAACC +MN908947.3 19204 19232 nCoV-2019_64_LEFT_1 2 + TCGATAGATATCCTGCTAATTCCATTGT +MN908947.3 19591 19616 nCoV-2019_64_RIGHT_1 2 - AGTCTTGTAAAAGTGTTCCAGAGGT +MN908947.3 19548 19570 nCoV-2019_65_LEFT_1 1 + GCTGGCTTTAGCTTGTGGGTTT +MN908947.3 19911 19939 nCoV-2019_65_RIGHT_1 1 - TGTCAGTCATAGAACAAACACCAATAGT +MN908947.3 19844 19866 nCoV-2019_66_LEFT_1 2 + GGGTGTGGACATTGCTGCTAAT +MN908947.3 20231 20255 nCoV-2019_66_RIGHT_1 2 - TCAATTTCCATTTGACTCCTGGGT +MN908947.3 20172 20200 nCoV-2019_67_LEFT_1 1 + GTTGTCCAACAATTACCTGAAACTTACT +MN908947.3 20542 20572 nCoV-2019_67_RIGHT_1 1 - CAACCTTAGAAACTACAGATAAATCTTGGG +MN908947.3 20472 20496 nCoV-2019_68_LEFT_1 2 + ACAGGTTCATCTAAGTGTGTGTGT +MN908947.3 20867 20890 nCoV-2019_68_RIGHT_1 2 - CTCCTTTATCAGAACCAGCACCA +MN908947.3 20786 20813 nCoV-2019_69_LEFT_1 1 + TGTCGCAAAATATACTCAACTGTGTCA +MN908947.3 21146 21169 nCoV-2019_69_RIGHT_1 1 - TCTTTATAGCCACGGAACCTCCA +MN908947.3 21075 21104 nCoV-2019_70_LEFT_1 2 + ACAAAAGAAAATGACTCTAAAGAGGGTTT +MN908947.3 21427 21455 nCoV-2019_70_RIGHT_1 2 - TGACCTTCTTTTAAAGACATAACAGCAG +MN908947.3 21357 21386 nCoV-2019_71_LEFT_1 1 + ACAAATCCAATTCAGTTGTCTTCCTATTC +MN908947.3 21716 21743 nCoV-2019_71_RIGHT_1 1 - TGGAAAAGAAAGGTAAGAACAAGTCCT +MN908947.3 21658 21682 nCoV-2019_72_LEFT_1 2 + ACACGTGGTGTTTATTACCCTGAC +MN908947.3 22013 22038 nCoV-2019_72_RIGHT_1 2 - ACTCTGAACTCACTTTCCATCCAAC +MN908947.3 21961 21990 nCoV-2019_73_LEFT_1 1 + CAATTTTGTAATGATCCATTTTTGGGTGT +MN908947.3 22324 22346 nCoV-2019_73_RIGHT_1 1 - CACCAGCTGTCCAACCTGAAGA +MN908947.3 22262 22290 nCoV-2019_74_LEFT_1 2 + ACATCACTAGGTTTCAAACTTTACTTGC +MN908947.3 22626 22650 nCoV-2019_74_RIGHT_1 2 - GCAACACAGTTGCTGATTCTCTTC +MN908947.3 22516 22542 nCoV-2019_75_LEFT_1 1 + AGAGTCCAACCAACAGAATCTATTGT +MN908947.3 22877 22903 nCoV-2019_75_RIGHT_1 1 - ACCACCAACCTTAGAATCAAGATTGT +MN908947.3 22797 22819 nCoV-2019_76_LEFT_1 2 + AGGGCAAACTGGAAAGATTGCT +MN908947.3 23192 23214 nCoV-2019_76_RIGHT_1 2 - ACACCTGTGCCTGTTAAACCAT +MN908947.3 23122 23144 nCoV-2019_77_LEFT_1 1 + CCAGCAACTGTTTGTGGACCTA +MN908947.3 23500 23522 nCoV-2019_77_RIGHT_1 1 - CAGCCCCTATTAAACAGCCTGC +MN908947.3 23443 23466 nCoV-2019_78_LEFT_1 2 + CAACTTACTCCTACTTGGCGTGT +MN908947.3 23822 23847 nCoV-2019_78_RIGHT_1 2 - TGTGTACAAAAACTGCCATATTGCA +MN908947.3 23789 23812 nCoV-2019_79_LEFT_1 1 + GTGGTGATTCAACTGAATGCAGC +MN908947.3 24145 24169 nCoV-2019_79_RIGHT_1 1 - CATTTCATCTGTGAGCAAAGGTGG +MN908947.3 24078 24100 nCoV-2019_80_LEFT_1 2 + TTGCCTTGGTGATATTGCTGCT +MN908947.3 24443 24467 nCoV-2019_80_RIGHT_1 2 - TGGAGCTAAGTTGTTTAACAAGCG +MN908947.3 24391 24416 nCoV-2019_81_LEFT_1 1 + GCACTTGGAAAACTTCAAGATGTGG +MN908947.3 24765 24789 nCoV-2019_81_RIGHT_1 1 - GTGAAGTTCTTTTCTTGTGCAGGG +MN908947.3 24696 24721 nCoV-2019_82_LEFT_1 2 + GGGCTATCATCTTATGTCCTTCCCT +MN908947.3 25052 25076 nCoV-2019_82_RIGHT_1 2 - TGCCAGAGATGTCACCTAAATCAA +MN908947.3 24978 25003 nCoV-2019_83_LEFT_1 1 + TCCTTTGCAACCTGAATTAGACTCA +MN908947.3 25347 25369 nCoV-2019_83_RIGHT_1 1 - TTTGACTCCTTTGAGCACTGGC +MN908947.3 25279 25301 nCoV-2019_84_LEFT_1 2 + TGCTGTAGTTGTCTCAAGGGCT +MN908947.3 25646 25673 nCoV-2019_84_RIGHT_1 2 - AGGTGTGAGTAAACTGTTACAAACAAC +MN908947.3 25601 25623 nCoV-2019_85_LEFT_1 1 + ACTAGCACTCTCCAAGGGTGTT +MN908947.3 25969 25994 nCoV-2019_85_RIGHT_1 1 - ACACAGTCTTTTACTCCAGATTCCC +MN908947.3 25902 25924 nCoV-2019_86_LEFT_1 2 + TCAGGTGATGGCACAACAAGTC +MN908947.3 26290 26315 nCoV-2019_86_RIGHT_1 2 - ACGAAAGCAAGAAAAAGAAGTACGC +MN908947.3 26197 26219 nCoV-2019_87_LEFT_1 1 + CGACTACTAGCGTGCCTTTGTA +MN908947.3 26566 26590 nCoV-2019_87_RIGHT_1 1 - ACTAGGTTCCATTGTTCAAGGAGC +MN908947.3 26520 26542 nCoV-2019_88_LEFT_1 2 + CCATGGCAGATTCCAACGGTAC +MN908947.3 26890 26913 nCoV-2019_88_RIGHT_1 2 - TGGTCAGAATAGTGCCATGGAGT +MN908947.3 26835 26857 nCoV-2019_89_LEFT_1 1 + GTACGCGTTCCATGTGGTCATT +MN908947.3 27202 27227 nCoV-2019_89_RIGHT_1 1 - ACCTGAAAGTCAACGAGATGAAACA +MN908947.3 27141 27164 nCoV-2019_90_LEFT_1 2 + ACACAGACCATTCCAGTAGCAGT +MN908947.3 27511 27533 nCoV-2019_90_RIGHT_1 2 - TGAAATGGTGAATTGCCCTCGT +MN908947.3 27446 27471 nCoV-2019_91_LEFT_1 1 + TCACTACCAAGAGTGTGTTAGAGGT +MN908947.3 27825 27854 nCoV-2019_91_RIGHT_1 1 - TTCAAGTGAGAACCAAAAGATAATAAGCA +MN908947.3 27784 27808 nCoV-2019_92_LEFT_1 2 + TTTGTGCTTTTTAGCCTTTCTGCT +MN908947.3 28145 28172 nCoV-2019_92_RIGHT_1 2 - AGGTTCCTGGCAATTAATTGTAAAAGG +MN908947.3 28081 28104 nCoV-2019_93_LEFT_1 1 + TGAGGCTGGTTCTAAATCACCCA +MN908947.3 28442 28464 nCoV-2019_93_RIGHT_1 1 - AGGTCTTCCTTGCCATGTTGAG +MN908947.3 28394 28416 nCoV-2019_94_LEFT_1 2 + GGCCCCAAGGTTTACCCAATAA +MN908947.3 28756 28779 nCoV-2019_94_RIGHT_1 2 - TTTGGCAATGTTGTTCCTTGAGG +MN908947.3 28677 28699 nCoV-2019_95_LEFT_1 1 + TGAGGGAGCCTTGAATACACCA +MN908947.3 29041 29063 nCoV-2019_95_RIGHT_1 1 - CAGTACGTTTTTGCCGAGGCTT +MN908947.3 28985 29007 nCoV-2019_96_LEFT_1 2 + GCCAACAACAACAAGGCCAAAC +MN908947.3 29356 29378 nCoV-2019_96_RIGHT_1 2 - TAGGCTCTGTTGGTGGGAATGT +MN908947.3 29288 29316 nCoV-2019_97_LEFT_1 1 + TGGATGACAAAGATCCAAATTTCAAAGA +MN908947.3 29665 29693 nCoV-2019_97_RIGHT_1 1 - ACACACTGATTAAAGATTGCTATGTGAG +MN908947.3 29486 29510 nCoV-2019_98_LEFT_1 2 + AACAATTGCAACAATCCATGAGCA +MN908947.3 29836 29866 nCoV-2019_98_RIGHT_1 2 - TTCTCCTAAGAAGCTATTAAAATCACATGG diff --git a/schemes/sars-cov-2/artic/400/v1.0.0/primer.svg b/schemes/sars-cov-2/artic/400/v1.0.0/primer.svg new file mode 100644 index 0000000..057456d --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v1.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/artic/v1/reference.fasta b/schemes/sars-cov-2/artic/400/v1.0.0/reference.fasta similarity index 100% rename from sars-cov-2/artic/v1/reference.fasta rename to schemes/sars-cov-2/artic/400/v1.0.0/reference.fasta diff --git a/schemes/sars-cov-2/artic/400/v1.0.0/scheme.bed b/schemes/sars-cov-2/artic/400/v1.0.0/scheme.bed new file mode 100644 index 0000000..d8b59e6 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v1.0.0/scheme.bed @@ -0,0 +1,196 @@ +MN908947.3 30 54 nCoV-2019_1_LEFT_1 1 + +MN908947.3 385 410 nCoV-2019_1_RIGHT_1 1 - +MN908947.3 320 342 nCoV-2019_2_LEFT_1 2 + +MN908947.3 704 726 nCoV-2019_2_RIGHT_1 2 - +MN908947.3 642 664 nCoV-2019_3_LEFT_1 1 + +MN908947.3 1004 1028 nCoV-2019_3_RIGHT_1 1 - +MN908947.3 943 965 nCoV-2019_4_LEFT_1 2 + +MN908947.3 1312 1337 nCoV-2019_4_RIGHT_1 2 - +MN908947.3 1242 1264 nCoV-2019_5_LEFT_1 1 + +MN908947.3 1623 1651 nCoV-2019_5_RIGHT_1 1 - +MN908947.3 1573 1595 nCoV-2019_6_LEFT_1 2 + +MN908947.3 1942 1964 nCoV-2019_6_RIGHT_1 2 - +MN908947.3 1875 1897 nCoV-2019_7_LEFT_1 1 + +MN908947.3 2247 2269 nCoV-2019_7_RIGHT_1 1 - +MN908947.3 2181 2205 nCoV-2019_8_LEFT_1 2 + +MN908947.3 2568 2592 nCoV-2019_8_RIGHT_1 2 - +MN908947.3 2505 2529 nCoV-2019_9_LEFT_1 1 + +MN908947.3 2882 2904 nCoV-2019_9_RIGHT_1 1 - +MN908947.3 2826 2850 nCoV-2019_10_LEFT_1 2 + +MN908947.3 3183 3210 nCoV-2019_10_RIGHT_1 2 - +MN908947.3 3144 3166 nCoV-2019_11_LEFT_1 1 + +MN908947.3 3507 3531 nCoV-2019_11_RIGHT_1 1 - +MN908947.3 3460 3482 nCoV-2019_12_LEFT_1 2 + +MN908947.3 3826 3853 nCoV-2019_12_RIGHT_1 2 - +MN908947.3 3771 3795 nCoV-2019_13_LEFT_1 1 + +MN908947.3 4142 4164 nCoV-2019_13_RIGHT_1 1 - +MN908947.3 4054 4077 nCoV-2019_14_LEFT_1 2 + +MN908947.3 4428 4450 nCoV-2019_14_RIGHT_1 2 - +MN908947.3 4294 4321 nCoV-2019_15_LEFT_1 1 + +MN908947.3 4674 4696 nCoV-2019_15_RIGHT_1 1 - +MN908947.3 4636 4658 nCoV-2019_16_LEFT_1 2 + +MN908947.3 4995 5017 nCoV-2019_16_RIGHT_1 2 - +MN908947.3 4939 4966 nCoV-2019_17_LEFT_1 1 + +MN908947.3 5296 5321 nCoV-2019_17_RIGHT_1 1 - +MN908947.3 5230 5259 nCoV-2019_18_LEFT_1 2 + +MN908947.3 5620 5644 nCoV-2019_18_RIGHT_1 2 - +MN908947.3 5563 5586 nCoV-2019_19_LEFT_1 1 + +MN908947.3 5932 5957 nCoV-2019_19_RIGHT_1 1 - +MN908947.3 5867 5894 nCoV-2019_20_LEFT_1 2 + +MN908947.3 6247 6272 nCoV-2019_20_RIGHT_1 2 - +MN908947.3 6167 6196 nCoV-2019_21_LEFT_1 1 + +MN908947.3 6528 6550 nCoV-2019_21_RIGHT_1 1 - +MN908947.3 6466 6495 nCoV-2019_22_LEFT_1 2 + +MN908947.3 6846 6873 nCoV-2019_22_RIGHT_1 2 - +MN908947.3 6718 6745 nCoV-2019_23_LEFT_1 1 + +MN908947.3 7092 7117 nCoV-2019_23_RIGHT_1 1 - +MN908947.3 7035 7058 nCoV-2019_24_LEFT_1 2 + +MN908947.3 7389 7415 nCoV-2019_24_RIGHT_1 2 - +MN908947.3 7305 7332 nCoV-2019_25_LEFT_1 1 + +MN908947.3 7671 7694 nCoV-2019_25_RIGHT_1 1 - +MN908947.3 7626 7651 nCoV-2019_26_LEFT_1 2 + +MN908947.3 7997 8019 nCoV-2019_26_RIGHT_1 2 - +MN908947.3 7943 7968 nCoV-2019_27_LEFT_1 1 + +MN908947.3 8319 8341 nCoV-2019_27_RIGHT_1 1 - +MN908947.3 8249 8275 nCoV-2019_28_LEFT_1 2 + +MN908947.3 8635 8661 nCoV-2019_28_RIGHT_1 2 - +MN908947.3 8595 8619 nCoV-2019_29_LEFT_1 1 + +MN908947.3 8954 8983 nCoV-2019_29_RIGHT_1 1 - +MN908947.3 8888 8913 nCoV-2019_30_LEFT_1 2 + +MN908947.3 9245 9271 nCoV-2019_30_RIGHT_1 2 - +MN908947.3 9204 9226 nCoV-2019_31_LEFT_1 1 + +MN908947.3 9557 9585 nCoV-2019_31_RIGHT_1 1 - +MN908947.3 9477 9502 nCoV-2019_32_LEFT_1 2 + +MN908947.3 9834 9858 nCoV-2019_32_RIGHT_1 2 - +MN908947.3 9784 9806 nCoV-2019_33_LEFT_1 1 + +MN908947.3 10146 10171 nCoV-2019_33_RIGHT_1 1 - +MN908947.3 10076 10099 nCoV-2019_34_LEFT_1 2 + +MN908947.3 10437 10459 nCoV-2019_34_RIGHT_1 2 - +MN908947.3 10362 10384 nCoV-2019_35_LEFT_1 1 + +MN908947.3 10737 10763 nCoV-2019_35_RIGHT_1 1 - +MN908947.3 10666 10688 nCoV-2019_36_LEFT_1 2 + +MN908947.3 11048 11074 nCoV-2019_36_RIGHT_1 2 - +MN908947.3 10999 11022 nCoV-2019_37_LEFT_1 1 + +MN908947.3 11372 11394 nCoV-2019_37_RIGHT_1 1 - +MN908947.3 11306 11331 nCoV-2019_38_LEFT_1 2 + +MN908947.3 11668 11693 nCoV-2019_38_RIGHT_1 2 - +MN908947.3 11555 11584 nCoV-2019_39_LEFT_1 1 + +MN908947.3 11927 11949 nCoV-2019_39_RIGHT_1 1 - +MN908947.3 11863 11889 nCoV-2019_40_LEFT_1 2 + +MN908947.3 12234 12256 nCoV-2019_40_RIGHT_1 2 - +MN908947.3 12110 12133 nCoV-2019_41_LEFT_1 1 + +MN908947.3 12465 12490 nCoV-2019_41_RIGHT_1 1 - +MN908947.3 12417 12439 nCoV-2019_42_LEFT_1 2 + +MN908947.3 12779 12802 nCoV-2019_42_RIGHT_1 2 - +MN908947.3 12710 12732 nCoV-2019_43_LEFT_1 1 + +MN908947.3 13074 13096 nCoV-2019_43_RIGHT_1 1 - +MN908947.3 13005 13027 nCoV-2019_44_LEFT_1 2 + +MN908947.3 13378 13400 nCoV-2019_44_RIGHT_1 2 - +MN908947.3 13319 13344 nCoV-2019_45_LEFT_1 1 + +MN908947.3 13669 13699 nCoV-2019_45_RIGHT_1 1 - +MN908947.3 13599 13621 nCoV-2019_46_LEFT_1 2 + +MN908947.3 13962 13984 nCoV-2019_46_RIGHT_1 2 - +MN908947.3 13918 13946 nCoV-2019_47_LEFT_1 1 + +MN908947.3 14271 14299 nCoV-2019_47_RIGHT_1 1 - +MN908947.3 14207 14232 nCoV-2019_48_LEFT_1 2 + +MN908947.3 14579 14601 nCoV-2019_48_RIGHT_1 2 - +MN908947.3 14545 14570 nCoV-2019_49_LEFT_1 1 + +MN908947.3 14898 14926 nCoV-2019_49_RIGHT_1 1 - +MN908947.3 14865 14895 nCoV-2019_50_LEFT_1 2 + +MN908947.3 15224 15246 nCoV-2019_50_RIGHT_1 2 - +MN908947.3 15171 15193 nCoV-2019_51_LEFT_1 1 + +MN908947.3 15538 15560 nCoV-2019_51_RIGHT_1 1 - +MN908947.3 15481 15503 nCoV-2019_52_LEFT_1 2 + +MN908947.3 15861 15886 nCoV-2019_52_RIGHT_1 2 - +MN908947.3 15827 15851 nCoV-2019_53_LEFT_1 1 + +MN908947.3 16186 16209 nCoV-2019_53_RIGHT_1 1 - +MN908947.3 16118 16144 nCoV-2019_54_LEFT_1 2 + +MN908947.3 16485 16510 nCoV-2019_54_RIGHT_1 2 - +MN908947.3 16416 16444 nCoV-2019_55_LEFT_1 1 + +MN908947.3 16804 16833 nCoV-2019_55_RIGHT_1 1 - +MN908947.3 16748 16770 nCoV-2019_56_LEFT_1 2 + +MN908947.3 17130 17152 nCoV-2019_56_RIGHT_1 2 - +MN908947.3 17065 17087 nCoV-2019_57_LEFT_1 1 + +MN908947.3 17430 17452 nCoV-2019_57_RIGHT_1 1 - +MN908947.3 17381 17406 nCoV-2019_58_LEFT_1 2 + +MN908947.3 17738 17761 nCoV-2019_58_RIGHT_1 2 - +MN908947.3 17674 17697 nCoV-2019_59_LEFT_1 1 + +MN908947.3 18036 18062 nCoV-2019_59_RIGHT_1 1 - +MN908947.3 17966 17993 nCoV-2019_60_LEFT_1 2 + +MN908947.3 18324 18348 nCoV-2019_60_RIGHT_1 2 - +MN908947.3 18253 18275 nCoV-2019_61_LEFT_1 1 + +MN908947.3 18650 18672 nCoV-2019_61_RIGHT_1 1 - +MN908947.3 18596 18618 nCoV-2019_62_LEFT_1 2 + +MN908947.3 18957 18979 nCoV-2019_62_RIGHT_1 2 - +MN908947.3 18896 18918 nCoV-2019_63_LEFT_1 1 + +MN908947.3 19275 19297 nCoV-2019_63_RIGHT_1 1 - +MN908947.3 19204 19232 nCoV-2019_64_LEFT_1 2 + +MN908947.3 19591 19616 nCoV-2019_64_RIGHT_1 2 - +MN908947.3 19548 19570 nCoV-2019_65_LEFT_1 1 + +MN908947.3 19911 19939 nCoV-2019_65_RIGHT_1 1 - +MN908947.3 19844 19866 nCoV-2019_66_LEFT_1 2 + +MN908947.3 20231 20255 nCoV-2019_66_RIGHT_1 2 - +MN908947.3 20172 20200 nCoV-2019_67_LEFT_1 1 + +MN908947.3 20542 20572 nCoV-2019_67_RIGHT_1 1 - +MN908947.3 20472 20496 nCoV-2019_68_LEFT_1 2 + +MN908947.3 20867 20890 nCoV-2019_68_RIGHT_1 2 - +MN908947.3 20786 20813 nCoV-2019_69_LEFT_1 1 + +MN908947.3 21146 21169 nCoV-2019_69_RIGHT_1 1 - +MN908947.3 21075 21104 nCoV-2019_70_LEFT_1 2 + +MN908947.3 21427 21455 nCoV-2019_70_RIGHT_1 2 - +MN908947.3 21357 21386 nCoV-2019_71_LEFT_1 1 + +MN908947.3 21716 21743 nCoV-2019_71_RIGHT_1 1 - +MN908947.3 21658 21682 nCoV-2019_72_LEFT_1 2 + +MN908947.3 22013 22038 nCoV-2019_72_RIGHT_1 2 - +MN908947.3 21961 21990 nCoV-2019_73_LEFT_1 1 + +MN908947.3 22324 22346 nCoV-2019_73_RIGHT_1 1 - +MN908947.3 22262 22290 nCoV-2019_74_LEFT_1 2 + +MN908947.3 22626 22650 nCoV-2019_74_RIGHT_1 2 - +MN908947.3 22516 22542 nCoV-2019_75_LEFT_1 1 + +MN908947.3 22877 22903 nCoV-2019_75_RIGHT_1 1 - +MN908947.3 22797 22819 nCoV-2019_76_LEFT_1 2 + +MN908947.3 23192 23214 nCoV-2019_76_RIGHT_1 2 - +MN908947.3 23122 23144 nCoV-2019_77_LEFT_1 1 + +MN908947.3 23500 23522 nCoV-2019_77_RIGHT_1 1 - +MN908947.3 23443 23466 nCoV-2019_78_LEFT_1 2 + +MN908947.3 23822 23847 nCoV-2019_78_RIGHT_1 2 - +MN908947.3 23789 23812 nCoV-2019_79_LEFT_1 1 + +MN908947.3 24145 24169 nCoV-2019_79_RIGHT_1 1 - +MN908947.3 24078 24100 nCoV-2019_80_LEFT_1 2 + +MN908947.3 24443 24467 nCoV-2019_80_RIGHT_1 2 - +MN908947.3 24391 24416 nCoV-2019_81_LEFT_1 1 + +MN908947.3 24765 24789 nCoV-2019_81_RIGHT_1 1 - +MN908947.3 24696 24721 nCoV-2019_82_LEFT_1 2 + +MN908947.3 25052 25076 nCoV-2019_82_RIGHT_1 2 - +MN908947.3 24978 25003 nCoV-2019_83_LEFT_1 1 + +MN908947.3 25347 25369 nCoV-2019_83_RIGHT_1 1 - +MN908947.3 25279 25301 nCoV-2019_84_LEFT_1 2 + +MN908947.3 25646 25673 nCoV-2019_84_RIGHT_1 2 - +MN908947.3 25601 25623 nCoV-2019_85_LEFT_1 1 + +MN908947.3 25969 25994 nCoV-2019_85_RIGHT_1 1 - +MN908947.3 25902 25924 nCoV-2019_86_LEFT_1 2 + +MN908947.3 26290 26315 nCoV-2019_86_RIGHT_1 2 - +MN908947.3 26197 26219 nCoV-2019_87_LEFT_1 1 + +MN908947.3 26566 26590 nCoV-2019_87_RIGHT_1 1 - +MN908947.3 26520 26542 nCoV-2019_88_LEFT_1 2 + +MN908947.3 26890 26913 nCoV-2019_88_RIGHT_1 2 - +MN908947.3 26835 26857 nCoV-2019_89_LEFT_1 1 + +MN908947.3 27202 27227 nCoV-2019_89_RIGHT_1 1 - +MN908947.3 27141 27164 nCoV-2019_90_LEFT_1 2 + +MN908947.3 27511 27533 nCoV-2019_90_RIGHT_1 2 - +MN908947.3 27446 27471 nCoV-2019_91_LEFT_1 1 + +MN908947.3 27825 27854 nCoV-2019_91_RIGHT_1 1 - +MN908947.3 27784 27808 nCoV-2019_92_LEFT_1 2 + +MN908947.3 28145 28172 nCoV-2019_92_RIGHT_1 2 - +MN908947.3 28081 28104 nCoV-2019_93_LEFT_1 1 + +MN908947.3 28442 28464 nCoV-2019_93_RIGHT_1 1 - +MN908947.3 28394 28416 nCoV-2019_94_LEFT_1 2 + +MN908947.3 28756 28779 nCoV-2019_94_RIGHT_1 2 - +MN908947.3 28677 28699 nCoV-2019_95_LEFT_1 1 + +MN908947.3 29041 29063 nCoV-2019_95_RIGHT_1 1 - +MN908947.3 28985 29007 nCoV-2019_96_LEFT_1 2 + +MN908947.3 29356 29378 nCoV-2019_96_RIGHT_1 2 - +MN908947.3 29288 29316 nCoV-2019_97_LEFT_1 1 + +MN908947.3 29665 29693 nCoV-2019_97_RIGHT_1 1 - +MN908947.3 29486 29510 nCoV-2019_98_LEFT_1 2 + +MN908947.3 29836 29866 nCoV-2019_98_RIGHT_1 2 - diff --git a/schemes/sars-cov-2/artic/400/v2.0.0/info.yml b/schemes/sars-cov-2/artic/400/v2.0.0/info.yml new file mode 100644 index 0000000..a105eea --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v2.0.0/info.yml @@ -0,0 +1,18 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: artic +amplicon_size: 400 +version: v2.0.0 +derived_from: sars-cov-2/artic/400/v1.0.0 +aliases: +- ARTIC/V2 +developers: +- ARTIC network +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v2 +source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v2.0.0 +citations: +- https://doi.org/10.1101%2F2020.09.04.283077 +license: CC-BY-SA-4.0 +primer_checksum: primaschema:70dc5635f73384fb +reference_checksum: primaschema:b1acd7163146bf17 +status: DEPRECATED diff --git a/schemes/sars-cov-2/artic/400/v2.0.0/primer.bed b/schemes/sars-cov-2/artic/400/v2.0.0/primer.bed new file mode 100644 index 0000000..69f878a --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v2.0.0/primer.bed @@ -0,0 +1,196 @@ +MN908947.3 30 54 nCoV-2019_1_LEFT_1 1 + ACCAACCAACTTTCGATCTCTTGT +MN908947.3 385 410 nCoV-2019_1_RIGHT_1 1 - CATCTTTAAGATGTTGACGTGCCTC +MN908947.3 320 342 nCoV-2019_2_LEFT_1 2 + CTGTTTTACAGGTTCGCGACGT +MN908947.3 704 726 nCoV-2019_2_RIGHT_1 2 - TAAGGATCAGTGCCAAGCTCGT +MN908947.3 642 664 nCoV-2019_3_LEFT_1 1 + CGGTAATAAAGGAGCTGGTGGC +MN908947.3 1004 1028 nCoV-2019_3_RIGHT_1 1 - AAGGTGTCTGCAATTCATAGCTCT +MN908947.3 943 965 nCoV-2019_4_LEFT_1 2 + GGTGTATACTGCTGCCGTGAAC +MN908947.3 1312 1337 nCoV-2019_4_RIGHT_1 2 - CACAAGTAGTGGCACCTTCTTTAGT +MN908947.3 1242 1264 nCoV-2019_5_LEFT_1 1 + TGGTGAAACTTCATGGCAGACG +MN908947.3 1623 1651 nCoV-2019_5_RIGHT_1 1 - ATTGATGTTGACTTTCTCTTTTTGGAGT +MN908947.3 1573 1595 nCoV-2019_6_LEFT_1 2 + GGTGTTGTTGGAGAAGGTTCCG +MN908947.3 1942 1964 nCoV-2019_6_RIGHT_1 2 - TAGCGGCCTTCTGTAAAACACG +MN908947.3 1875 1897 nCoV-2019_7_LEFT_1 1 + ATCAGAGGCTGCTCGTGTTGTA +MN908947.3 2247 2269 nCoV-2019_7_RIGHT_1 1 - TGCACAGGTGACAATTTGTCCA +MN908947.3 2181 2205 nCoV-2019_8_LEFT_1 2 + AGAGTTTCTTAGAGACGGTTGGGA +MN908947.3 2568 2592 nCoV-2019_8_RIGHT_1 2 - GCTTCAACAGCTTCACTAGTAGGT +MN908947.3 2505 2529 nCoV-2019_9_LEFT_1 1 + TCCCACAGAAGTGTTAACAGAGGA +MN908947.3 2882 2904 nCoV-2019_9_RIGHT_1 1 - ATGACAGCATCTGCCACAACAC +MN908947.3 2826 2850 nCoV-2019_10_LEFT_1 2 + TGAGAAGTGCTCTGCCTATACAGT +MN908947.3 3183 3210 nCoV-2019_10_RIGHT_1 2 - TCATCTAACCAATCTTCTTCTTGCTCT +MN908947.3 3144 3166 nCoV-2019_11_LEFT_1 1 + GGAATTTGGTGCCACTTCTGCT +MN908947.3 3507 3531 nCoV-2019_11_RIGHT_1 1 - TCATCAGATTCAACTTGCATGGCA +MN908947.3 3460 3482 nCoV-2019_12_LEFT_1 2 + AAACATGGAGGAGGTGTTGCAG +MN908947.3 3826 3853 nCoV-2019_12_RIGHT_1 2 - TTCACTCTTCATTTCCAAAAAGCTTGA +MN908947.3 3771 3795 nCoV-2019_13_LEFT_1 1 + TCGCACAAATGTCTACTTAGCTGT +MN908947.3 4142 4164 nCoV-2019_13_RIGHT_1 1 - ACCACAGCAGTTAAAACACCCT +MN908947.3 4054 4077 nCoV-2019_14_LEFT_1 2 + CATCCAGATTCTGCCACTCTTGT +MN908947.3 4428 4450 nCoV-2019_14_RIGHT_1 2 - AGTTTCCACACAGACAGGCATT +MN908947.3 4294 4321 nCoV-2019_15_LEFT_1 1 + ACAGTGCTTAAAAAGTGTAAAAGTGCC +MN908947.3 4674 4696 nCoV-2019_15_RIGHT_1 1 - AACAGAAACTGTAGCTGGCACT +MN908947.3 4636 4658 nCoV-2019_16_LEFT_1 2 + AATTTGGAAGAAGCTGCTCGGT +MN908947.3 4995 5017 nCoV-2019_16_RIGHT_1 2 - CACAACTTGCGTGTGGAGGTTA +MN908947.3 4939 4966 nCoV-2019_17_LEFT_1 1 + CTTCTTTCTTTGAGAGAAGTGAGGACT +MN908947.3 5296 5321 nCoV-2019_17_RIGHT_1 1 - TTTGTTGGAGTGTTAACAATGCAGT +MN908947.3 5257 5287 nCoV-2019_18_LEFT_2 2 + ACTTCTATTAAATGGGCAGATAACAACTGT +MN908947.3 5620 5644 nCoV-2019_18_RIGHT_1 2 - AGCTTGTTTACCACACGTACAAGG +MN908947.3 5563 5586 nCoV-2019_19_LEFT_1 1 + GCTGTTATGTACATGGGCACACT +MN908947.3 5932 5957 nCoV-2019_19_RIGHT_1 1 - TGTCCAACTTAGGGTCAATTTCTGT +MN908947.3 5867 5894 nCoV-2019_20_LEFT_1 2 + ACAAAGAAAACAGTTACACAACAACCA +MN908947.3 6247 6272 nCoV-2019_20_RIGHT_1 2 - ACGTGGCTTTATTAGTTGCATTGTT +MN908947.3 6167 6196 nCoV-2019_21_LEFT_1 1 + TGGCTATTGATTATAAACACTACACACCC +MN908947.3 6528 6550 nCoV-2019_21_RIGHT_1 1 - TAGATCTGTGTGGCCAACCTCT +MN908947.3 6466 6495 nCoV-2019_22_LEFT_1 2 + ACTACCGAAGTTGTAGGAGACATTATACT +MN908947.3 6846 6873 nCoV-2019_22_RIGHT_1 2 - ACAGTATTCTTTGCTATAGTAGTCGGC +MN908947.3 6718 6745 nCoV-2019_23_LEFT_1 1 + ACAACTACTAACATAGTTACACGGTGT +MN908947.3 7092 7117 nCoV-2019_23_RIGHT_1 1 - ACCAGTACAGTAGGTTGCAATAGTG +MN908947.3 7035 7058 nCoV-2019_24_LEFT_1 2 + AGGCATGCCTTCTTACTGTACTG +MN908947.3 7389 7415 nCoV-2019_24_RIGHT_1 2 - ACATTCTAACCATAGCTGAAATCGGG +MN908947.3 7305 7332 nCoV-2019_25_LEFT_1 1 + GCAATTGTTTTTCAGCTATTTTGCAGT +MN908947.3 7671 7694 nCoV-2019_25_RIGHT_1 1 - ACTGTAGTGACAAGTCTCTCGCA +MN908947.3 7626 7651 nCoV-2019_26_LEFT_1 2 + TTGTGATACATTCTGTGCTGGTAGT +MN908947.3 7997 8019 nCoV-2019_26_RIGHT_1 2 - TCCGCACTATCACCAACATCAG +MN908947.3 7943 7968 nCoV-2019_27_LEFT_1 1 + ACTACAGTCAGCTTATGTGTCAACC +MN908947.3 8319 8341 nCoV-2019_27_RIGHT_1 1 - AATACAAGCACCAAGGTCACGG +MN908947.3 8249 8275 nCoV-2019_28_LEFT_1 2 + ACATAGAAGTTACTGGCGATAGTTGT +MN908947.3 8635 8661 nCoV-2019_28_RIGHT_1 2 - TGTTTAGACATGACATGAACAGGTGT +MN908947.3 8595 8619 nCoV-2019_29_LEFT_1 1 + ACTTGTGTTCCTTTTTGTTGCTGC +MN908947.3 8954 8983 nCoV-2019_29_RIGHT_1 1 - AGTGTACTCTATAAGTTTTGATGGTGTGT +MN908947.3 8888 8913 nCoV-2019_30_LEFT_1 2 + GCACAACTAATGGTGACTTTTTGCA +MN908947.3 9245 9271 nCoV-2019_30_RIGHT_1 2 - ACCACTAGTAGATACACAAACACCAG +MN908947.3 9204 9226 nCoV-2019_31_LEFT_1 1 + TTCTGAGTACTGTAGGCACGGC +MN908947.3 9557 9585 nCoV-2019_31_RIGHT_1 1 - ACAGAATAAACACCAGGTAAGAATGAGT +MN908947.3 9477 9502 nCoV-2019_32_LEFT_1 2 + TGGTGAATACAGTCATGTAGTTGCC +MN908947.3 9834 9858 nCoV-2019_32_RIGHT_1 2 - AGCACATCACTACGCAACTTTAGA +MN908947.3 9784 9806 nCoV-2019_33_LEFT_1 1 + ACTTTTGAAGAAGCTGCGCTGT +MN908947.3 10146 10171 nCoV-2019_33_RIGHT_1 1 - TGGACAGTAAACTACGTCATCAAGC +MN908947.3 10076 10099 nCoV-2019_34_LEFT_1 2 + TCCCATCTGGTAAAGTTGAGGGT +MN908947.3 10437 10459 nCoV-2019_34_RIGHT_1 2 - AGTGAAATTGGGCCTCATAGCA +MN908947.3 10362 10384 nCoV-2019_35_LEFT_1 1 + TGTTCGCATTCAACCAGGACAG +MN908947.3 10737 10763 nCoV-2019_35_RIGHT_1 1 - ACTTCATAGCCACAAGGTTAAAGTCA +MN908947.3 10666 10688 nCoV-2019_36_LEFT_1 2 + TTAGCTTGGTTGTACGCTGCTG +MN908947.3 11048 11074 nCoV-2019_36_RIGHT_1 2 - GAACAAAGACCATTGAGTACTCTGGA +MN908947.3 10999 11022 nCoV-2019_37_LEFT_1 1 + ACACACCACTGGTTGTTACTCAC +MN908947.3 11372 11394 nCoV-2019_37_RIGHT_1 1 - GTCCACACTCTCCTAGCACCAT +MN908947.3 11306 11331 nCoV-2019_38_LEFT_1 2 + ACTGTGTTATGTATGCATCAGCTGT +MN908947.3 11668 11693 nCoV-2019_38_RIGHT_1 2 - CACCAAGAGTCAGTCTAAAGTAGCG +MN908947.3 11555 11584 nCoV-2019_39_LEFT_1 1 + AGTATTGCCCTATTTTCTTCATAACTGGT +MN908947.3 11927 11949 nCoV-2019_39_RIGHT_1 1 - TGTAACTGGACACATTGAGCCC +MN908947.3 11863 11889 nCoV-2019_40_LEFT_1 2 + TGCACATCAGTAGTCTTACTCTCAGT +MN908947.3 12234 12256 nCoV-2019_40_RIGHT_1 2 - CATGGCTGCATCACGGTCAAAT +MN908947.3 12110 12133 nCoV-2019_41_LEFT_1 1 + GTTCCCTTCCATCATATGCAGCT +MN908947.3 12465 12490 nCoV-2019_41_RIGHT_1 1 - TGGTATGACAACCATTAGTTTGGCT +MN908947.3 12417 12439 nCoV-2019_42_LEFT_1 2 + TGCAAGAGATGGTTGTGTTCCC +MN908947.3 12779 12802 nCoV-2019_42_RIGHT_1 2 - CCTACCTCCCTTTGTTGTGTTGT +MN908947.3 12710 12732 nCoV-2019_43_LEFT_1 1 + TACGACAGATGTCTTGTGCTGC +MN908947.3 13074 13096 nCoV-2019_43_RIGHT_1 1 - AGCAGCATCTACAGCAAAAGCA +MN908947.3 13005 13027 nCoV-2019_44_LEFT_1 2 + TGCCACAGTACGTCTACAAGCT +MN908947.3 13378 13400 nCoV-2019_44_RIGHT_1 2 - AACCTTTCCACATACCGCAGAC +MN908947.3 13319 13344 nCoV-2019_45_LEFT_1 1 + TACCTACAACTTGTGCTAATGACCC +MN908947.3 13669 13699 nCoV-2019_45_RIGHT_1 1 - AAATTGTTTCTTCATGTTGGTAGTTAGAGA +MN908947.3 13599 13621 nCoV-2019_46_LEFT_1 2 + TGTCGCTTCCAAGAAAAGGACG +MN908947.3 13962 13984 nCoV-2019_46_RIGHT_1 2 - CACGTTCACCTAAGTTGGCGTA +MN908947.3 13918 13946 nCoV-2019_47_LEFT_1 1 + AGGACTGGTATGATTTTGTAGAAAACCC +MN908947.3 14271 14299 nCoV-2019_47_RIGHT_1 1 - AATAACGGTCAAAGAGTTTTAACCTCTC +MN908947.3 14207 14232 nCoV-2019_48_LEFT_1 2 + TGTTGACACTGACTTAACAAAGCCT +MN908947.3 14579 14601 nCoV-2019_48_RIGHT_1 2 - TAGATTACCAGAAGCAGCGTGC +MN908947.3 14545 14570 nCoV-2019_49_LEFT_1 1 + AGGAATTACTTGTGTATGCTGCTGA +MN908947.3 14898 14926 nCoV-2019_49_RIGHT_1 1 - TGACGATGACTTGGTTAGCATTAATACA +MN908947.3 14865 14895 nCoV-2019_50_LEFT_1 2 + GTTGATAAGTACTTTGATTGTTACGATGGT +MN908947.3 15224 15246 nCoV-2019_50_RIGHT_1 2 - TAACATGTTGTGCCAACCACCA +MN908947.3 15171 15193 nCoV-2019_51_LEFT_1 1 + TCAATAGCCGCCACTAGAGGAG +MN908947.3 15538 15560 nCoV-2019_51_RIGHT_1 1 - AGTGCATTAACATTGGCCGTGA +MN908947.3 15481 15503 nCoV-2019_52_LEFT_1 2 + CATCAGGAGATGCCACAACTGC +MN908947.3 15861 15886 nCoV-2019_52_RIGHT_1 2 - GTTGAGAGCAAAATTCATGAGGTCC +MN908947.3 15827 15851 nCoV-2019_53_LEFT_1 1 + AGCAAAATGTTGGACTGAGACTGA +MN908947.3 16186 16209 nCoV-2019_53_RIGHT_1 1 - AGCCTCATAAAACTCAGGTTCCC +MN908947.3 16118 16144 nCoV-2019_54_LEFT_1 2 + TGAGTTAACAGGACACATGTTAGACA +MN908947.3 16485 16510 nCoV-2019_54_RIGHT_1 2 - AACCAAAAACTTGTCCATTAGCACA +MN908947.3 16416 16444 nCoV-2019_55_LEFT_1 1 + ACTCAACTTTACTTAGGAGGTATGAGCT +MN908947.3 16804 16833 nCoV-2019_55_RIGHT_1 1 - GGTGTACTCTCCTATTTGTACTTTACTGT +MN908947.3 16748 16770 nCoV-2019_56_LEFT_1 2 + ACCTAGACCACCACTTAACCGA +MN908947.3 17130 17152 nCoV-2019_56_RIGHT_1 2 - ACACTATGCGAGCAGAAGGGTA +MN908947.3 17065 17087 nCoV-2019_57_LEFT_1 1 + ATTCTACACTCCAGGGACCACC +MN908947.3 17430 17452 nCoV-2019_57_RIGHT_1 1 - GTAATTGAGCAGGGTCGCCAAT +MN908947.3 17381 17406 nCoV-2019_58_LEFT_1 2 + TGATTTGAGTGTTGTCAATGCCAGA +MN908947.3 17738 17761 nCoV-2019_58_RIGHT_1 2 - CTTTTCTCCAAGCAGGGTTACGT +MN908947.3 17674 17697 nCoV-2019_59_LEFT_1 1 + TCACGCATGATGTTTCATCTGCA +MN908947.3 18036 18062 nCoV-2019_59_RIGHT_1 1 - AAGAGTCCTGTTACATTTTCAGCTTG +MN908947.3 17966 17993 nCoV-2019_60_LEFT_1 2 + TGATAGAGACCTTTATGACAAGTTGCA +MN908947.3 18324 18348 nCoV-2019_60_RIGHT_1 2 - GGTACCAACAGCTTCTCTAGTAGC +MN908947.3 18253 18275 nCoV-2019_61_LEFT_1 1 + TGTTTATCACCCGCGAAGAAGC +MN908947.3 18650 18672 nCoV-2019_61_RIGHT_1 1 - ATCACATAGACAACAGGTGCGC +MN908947.3 18596 18618 nCoV-2019_62_LEFT_1 2 + GGCACATGGCTTTGAGTTGACA +MN908947.3 18957 18979 nCoV-2019_62_RIGHT_1 2 - GTTGAACCTTTCTACAAGCCGC +MN908947.3 18896 18918 nCoV-2019_63_LEFT_1 1 + TGTTAAGCGTGTTGACTGGACT +MN908947.3 19275 19297 nCoV-2019_63_RIGHT_1 1 - ACAAACTGCCACCATCACAACC +MN908947.3 19204 19232 nCoV-2019_64_LEFT_1 2 + TCGATAGATATCCTGCTAATTCCATTGT +MN908947.3 19591 19616 nCoV-2019_64_RIGHT_1 2 - AGTCTTGTAAAAGTGTTCCAGAGGT +MN908947.3 19548 19570 nCoV-2019_65_LEFT_1 1 + GCTGGCTTTAGCTTGTGGGTTT +MN908947.3 19911 19939 nCoV-2019_65_RIGHT_1 1 - TGTCAGTCATAGAACAAACACCAATAGT +MN908947.3 19844 19866 nCoV-2019_66_LEFT_1 2 + GGGTGTGGACATTGCTGCTAAT +MN908947.3 20231 20255 nCoV-2019_66_RIGHT_1 2 - TCAATTTCCATTTGACTCCTGGGT +MN908947.3 20172 20200 nCoV-2019_67_LEFT_1 1 + GTTGTCCAACAATTACCTGAAACTTACT +MN908947.3 20542 20572 nCoV-2019_67_RIGHT_1 1 - CAACCTTAGAAACTACAGATAAATCTTGGG +MN908947.3 20472 20496 nCoV-2019_68_LEFT_1 2 + ACAGGTTCATCTAAGTGTGTGTGT +MN908947.3 20867 20890 nCoV-2019_68_RIGHT_1 2 - CTCCTTTATCAGAACCAGCACCA +MN908947.3 20786 20813 nCoV-2019_69_LEFT_1 1 + TGTCGCAAAATATACTCAACTGTGTCA +MN908947.3 21146 21169 nCoV-2019_69_RIGHT_1 1 - TCTTTATAGCCACGGAACCTCCA +MN908947.3 21075 21104 nCoV-2019_70_LEFT_1 2 + ACAAAAGAAAATGACTCTAAAGAGGGTTT +MN908947.3 21427 21455 nCoV-2019_70_RIGHT_1 2 - TGACCTTCTTTTAAAGACATAACAGCAG +MN908947.3 21357 21386 nCoV-2019_71_LEFT_1 1 + ACAAATCCAATTCAGTTGTCTTCCTATTC +MN908947.3 21716 21743 nCoV-2019_71_RIGHT_1 1 - TGGAAAAGAAAGGTAAGAACAAGTCCT +MN908947.3 21658 21682 nCoV-2019_72_LEFT_1 2 + ACACGTGGTGTTTATTACCCTGAC +MN908947.3 22013 22038 nCoV-2019_72_RIGHT_1 2 - ACTCTGAACTCACTTTCCATCCAAC +MN908947.3 21961 21990 nCoV-2019_73_LEFT_1 1 + CAATTTTGTAATGATCCATTTTTGGGTGT +MN908947.3 22324 22346 nCoV-2019_73_RIGHT_1 1 - CACCAGCTGTCCAACCTGAAGA +MN908947.3 22262 22290 nCoV-2019_74_LEFT_1 2 + ACATCACTAGGTTTCAAACTTTACTTGC +MN908947.3 22626 22650 nCoV-2019_74_RIGHT_1 2 - GCAACACAGTTGCTGATTCTCTTC +MN908947.3 22516 22542 nCoV-2019_75_LEFT_1 1 + AGAGTCCAACCAACAGAATCTATTGT +MN908947.3 22877 22903 nCoV-2019_75_RIGHT_1 1 - ACCACCAACCTTAGAATCAAGATTGT +MN908947.3 22797 22819 nCoV-2019_76_LEFT_1 2 + AGGGCAAACTGGAAAGATTGCT +MN908947.3 23192 23214 nCoV-2019_76_RIGHT_1 2 - ACACCTGTGCCTGTTAAACCAT +MN908947.3 23122 23144 nCoV-2019_77_LEFT_1 1 + CCAGCAACTGTTTGTGGACCTA +MN908947.3 23500 23522 nCoV-2019_77_RIGHT_1 1 - CAGCCCCTATTAAACAGCCTGC +MN908947.3 23443 23466 nCoV-2019_78_LEFT_1 2 + CAACTTACTCCTACTTGGCGTGT +MN908947.3 23822 23847 nCoV-2019_78_RIGHT_1 2 - TGTGTACAAAAACTGCCATATTGCA +MN908947.3 23789 23812 nCoV-2019_79_LEFT_1 1 + GTGGTGATTCAACTGAATGCAGC +MN908947.3 24145 24169 nCoV-2019_79_RIGHT_1 1 - CATTTCATCTGTGAGCAAAGGTGG +MN908947.3 24078 24100 nCoV-2019_80_LEFT_1 2 + TTGCCTTGGTGATATTGCTGCT +MN908947.3 24443 24467 nCoV-2019_80_RIGHT_1 2 - TGGAGCTAAGTTGTTTAACAAGCG +MN908947.3 24391 24416 nCoV-2019_81_LEFT_1 1 + GCACTTGGAAAACTTCAAGATGTGG +MN908947.3 24765 24789 nCoV-2019_81_RIGHT_1 1 - GTGAAGTTCTTTTCTTGTGCAGGG +MN908947.3 24696 24721 nCoV-2019_82_LEFT_1 2 + GGGCTATCATCTTATGTCCTTCCCT +MN908947.3 25052 25076 nCoV-2019_82_RIGHT_1 2 - TGCCAGAGATGTCACCTAAATCAA +MN908947.3 24978 25003 nCoV-2019_83_LEFT_1 1 + TCCTTTGCAACCTGAATTAGACTCA +MN908947.3 25347 25369 nCoV-2019_83_RIGHT_1 1 - TTTGACTCCTTTGAGCACTGGC +MN908947.3 25279 25301 nCoV-2019_84_LEFT_1 2 + TGCTGTAGTTGTCTCAAGGGCT +MN908947.3 25646 25673 nCoV-2019_84_RIGHT_1 2 - AGGTGTGAGTAAACTGTTACAAACAAC +MN908947.3 25601 25623 nCoV-2019_85_LEFT_1 1 + ACTAGCACTCTCCAAGGGTGTT +MN908947.3 25969 25994 nCoV-2019_85_RIGHT_1 1 - ACACAGTCTTTTACTCCAGATTCCC +MN908947.3 25902 25924 nCoV-2019_86_LEFT_1 2 + TCAGGTGATGGCACAACAAGTC +MN908947.3 26290 26315 nCoV-2019_86_RIGHT_1 2 - ACGAAAGCAAGAAAAAGAAGTACGC +MN908947.3 26197 26219 nCoV-2019_87_LEFT_1 1 + CGACTACTAGCGTGCCTTTGTA +MN908947.3 26566 26590 nCoV-2019_87_RIGHT_1 1 - ACTAGGTTCCATTGTTCAAGGAGC +MN908947.3 26520 26542 nCoV-2019_88_LEFT_1 2 + CCATGGCAGATTCCAACGGTAC +MN908947.3 26890 26913 nCoV-2019_88_RIGHT_1 2 - TGGTCAGAATAGTGCCATGGAGT +MN908947.3 26835 26857 nCoV-2019_89_LEFT_1 1 + GTACGCGTTCCATGTGGTCATT +MN908947.3 27202 27227 nCoV-2019_89_RIGHT_1 1 - ACCTGAAAGTCAACGAGATGAAACA +MN908947.3 27141 27164 nCoV-2019_90_LEFT_1 2 + ACACAGACCATTCCAGTAGCAGT +MN908947.3 27511 27533 nCoV-2019_90_RIGHT_1 2 - TGAAATGGTGAATTGCCCTCGT +MN908947.3 27446 27471 nCoV-2019_91_LEFT_1 1 + TCACTACCAAGAGTGTGTTAGAGGT +MN908947.3 27825 27854 nCoV-2019_91_RIGHT_1 1 - TTCAAGTGAGAACCAAAAGATAATAAGCA +MN908947.3 27784 27808 nCoV-2019_92_LEFT_1 2 + TTTGTGCTTTTTAGCCTTTCTGCT +MN908947.3 28145 28172 nCoV-2019_92_RIGHT_1 2 - AGGTTCCTGGCAATTAATTGTAAAAGG +MN908947.3 28081 28104 nCoV-2019_93_LEFT_1 1 + TGAGGCTGGTTCTAAATCACCCA +MN908947.3 28442 28464 nCoV-2019_93_RIGHT_1 1 - AGGTCTTCCTTGCCATGTTGAG +MN908947.3 28394 28416 nCoV-2019_94_LEFT_1 2 + GGCCCCAAGGTTTACCCAATAA +MN908947.3 28756 28779 nCoV-2019_94_RIGHT_1 2 - TTTGGCAATGTTGTTCCTTGAGG +MN908947.3 28677 28699 nCoV-2019_95_LEFT_1 1 + TGAGGGAGCCTTGAATACACCA +MN908947.3 29041 29063 nCoV-2019_95_RIGHT_1 1 - CAGTACGTTTTTGCCGAGGCTT +MN908947.3 28985 29007 nCoV-2019_96_LEFT_1 2 + GCCAACAACAACAAGGCCAAAC +MN908947.3 29356 29378 nCoV-2019_96_RIGHT_1 2 - TAGGCTCTGTTGGTGGGAATGT +MN908947.3 29288 29316 nCoV-2019_97_LEFT_1 1 + TGGATGACAAAGATCCAAATTTCAAAGA +MN908947.3 29665 29693 nCoV-2019_97_RIGHT_1 1 - ACACACTGATTAAAGATTGCTATGTGAG +MN908947.3 29486 29510 nCoV-2019_98_LEFT_1 2 + AACAATTGCAACAATCCATGAGCA +MN908947.3 29836 29866 nCoV-2019_98_RIGHT_1 2 - TTCTCCTAAGAAGCTATTAAAATCACATGG diff --git a/schemes/sars-cov-2/artic/400/v2.0.0/primer.svg b/schemes/sars-cov-2/artic/400/v2.0.0/primer.svg new file mode 100644 index 0000000..9199903 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v2.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/artic/v2/reference.fasta b/schemes/sars-cov-2/artic/400/v2.0.0/reference.fasta similarity index 100% rename from sars-cov-2/artic/v2/reference.fasta rename to schemes/sars-cov-2/artic/400/v2.0.0/reference.fasta diff --git a/schemes/sars-cov-2/artic/400/v2.0.0/scheme.bed b/schemes/sars-cov-2/artic/400/v2.0.0/scheme.bed new file mode 100644 index 0000000..76e57e4 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v2.0.0/scheme.bed @@ -0,0 +1,196 @@ +MN908947.3 30 54 nCoV-2019_1_LEFT_1 1 + +MN908947.3 385 410 nCoV-2019_1_RIGHT_1 1 - 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+MN908947.3 24078 24100 nCoV-2019_80_LEFT_1 2 + +MN908947.3 24443 24467 nCoV-2019_80_RIGHT_1 2 - +MN908947.3 24391 24416 nCoV-2019_81_LEFT_1 1 + +MN908947.3 24765 24789 nCoV-2019_81_RIGHT_1 1 - +MN908947.3 24696 24721 nCoV-2019_82_LEFT_1 2 + +MN908947.3 25052 25076 nCoV-2019_82_RIGHT_1 2 - +MN908947.3 24978 25003 nCoV-2019_83_LEFT_1 1 + +MN908947.3 25347 25369 nCoV-2019_83_RIGHT_1 1 - +MN908947.3 25279 25301 nCoV-2019_84_LEFT_1 2 + +MN908947.3 25646 25673 nCoV-2019_84_RIGHT_1 2 - +MN908947.3 25601 25623 nCoV-2019_85_LEFT_1 1 + +MN908947.3 25969 25994 nCoV-2019_85_RIGHT_1 1 - +MN908947.3 25902 25924 nCoV-2019_86_LEFT_1 2 + +MN908947.3 26290 26315 nCoV-2019_86_RIGHT_1 2 - +MN908947.3 26197 26219 nCoV-2019_87_LEFT_1 1 + +MN908947.3 26566 26590 nCoV-2019_87_RIGHT_1 1 - +MN908947.3 26520 26542 nCoV-2019_88_LEFT_1 2 + +MN908947.3 26890 26913 nCoV-2019_88_RIGHT_1 2 - +MN908947.3 26835 26857 nCoV-2019_89_LEFT_1 1 + +MN908947.3 27202 27227 nCoV-2019_89_RIGHT_1 1 - +MN908947.3 27141 27164 nCoV-2019_90_LEFT_1 2 + +MN908947.3 27511 27533 nCoV-2019_90_RIGHT_1 2 - +MN908947.3 27446 27471 nCoV-2019_91_LEFT_1 1 + +MN908947.3 27825 27854 nCoV-2019_91_RIGHT_1 1 - +MN908947.3 27784 27808 nCoV-2019_92_LEFT_1 2 + +MN908947.3 28145 28172 nCoV-2019_92_RIGHT_1 2 - +MN908947.3 28081 28104 nCoV-2019_93_LEFT_1 1 + +MN908947.3 28442 28464 nCoV-2019_93_RIGHT_1 1 - +MN908947.3 28394 28416 nCoV-2019_94_LEFT_1 2 + +MN908947.3 28756 28779 nCoV-2019_94_RIGHT_1 2 - +MN908947.3 28677 28699 nCoV-2019_95_LEFT_1 1 + +MN908947.3 29041 29063 nCoV-2019_95_RIGHT_1 1 - +MN908947.3 28985 29007 nCoV-2019_96_LEFT_1 2 + +MN908947.3 29356 29378 nCoV-2019_96_RIGHT_1 2 - +MN908947.3 29288 29316 nCoV-2019_97_LEFT_1 1 + +MN908947.3 29665 29693 nCoV-2019_97_RIGHT_1 1 - +MN908947.3 29486 29510 nCoV-2019_98_LEFT_1 2 + +MN908947.3 29836 29866 nCoV-2019_98_RIGHT_1 2 - diff --git a/schemes/sars-cov-2/artic/400/v3.0.0/info.yml b/schemes/sars-cov-2/artic/400/v3.0.0/info.yml new file mode 100644 index 0000000..d005b09 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v3.0.0/info.yml @@ -0,0 +1,23 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: artic +amplicon_size: 400 +version: v3.0.0 +derived_from: sars-cov-2/artic/400/v2.0.0 +aliases: +- ARTIC/V4.0 +developers: +- ARTIC network +vendors: +- organisation_name: IDT + kit_name: '10011442' +- organisation_name: Eurofins + home_page: https://eurofinsgenomics.com +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v3 +source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v3.0.0 +citations: +- https://doi.org/10.1101%2F2020.09.04.283077 +license: CC-BY-SA-4.0 +primer_checksum: primaschema:9da9db30cf27cd53 +reference_checksum: primaschema:b1acd7163146bf17 +status: DEPRECATED diff --git a/schemes/sars-cov-2/artic/400/v3.0.0/primer.bed b/schemes/sars-cov-2/artic/400/v3.0.0/primer.bed new file mode 100644 index 0000000..fdb39bd --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v3.0.0/primer.bed @@ -0,0 +1,218 @@ +MN908947.3 30 54 nCoV-2019_1_LEFT_1 1 + ACCAACCAACTTTCGATCTCTTGT +MN908947.3 385 410 nCoV-2019_1_RIGHT_1 1 - CATCTTTAAGATGTTGACGTGCCTC +MN908947.3 320 342 nCoV-2019_2_LEFT_1 2 + CTGTTTTACAGGTTCGCGACGT +MN908947.3 704 726 nCoV-2019_2_RIGHT_1 2 - TAAGGATCAGTGCCAAGCTCGT +MN908947.3 642 664 nCoV-2019_3_LEFT_1 1 + CGGTAATAAAGGAGCTGGTGGC +MN908947.3 1004 1028 nCoV-2019_3_RIGHT_1 1 - AAGGTGTCTGCAATTCATAGCTCT +MN908947.3 943 965 nCoV-2019_4_LEFT_1 2 + GGTGTATACTGCTGCCGTGAAC +MN908947.3 1312 1337 nCoV-2019_4_RIGHT_1 2 - CACAAGTAGTGGCACCTTCTTTAGT +MN908947.3 1242 1264 nCoV-2019_5_LEFT_1 1 + TGGTGAAACTTCATGGCAGACG +MN908947.3 1623 1651 nCoV-2019_5_RIGHT_1 1 - ATTGATGTTGACTTTCTCTTTTTGGAGT +MN908947.3 1573 1595 nCoV-2019_6_LEFT_1 2 + GGTGTTGTTGGAGAAGGTTCCG +MN908947.3 1942 1964 nCoV-2019_6_RIGHT_1 2 - TAGCGGCCTTCTGTAAAACACG +MN908947.3 1868 1890 nCoV-2019_7_LEFT_2 1 + CATTTGCATCAGAGGCTGCTCG +MN908947.3 1875 1897 nCoV-2019_7_LEFT_1 1 + ATCAGAGGCTGCTCGTGTTGTA +MN908947.3 2242 2264 nCoV-2019_7_RIGHT_1 1 - AGGTGACAATTTGTCCACCGAC +MN908947.3 2247 2269 nCoV-2019_7_RIGHT_2 1 - TGCACAGGTGACAATTTGTCCA +MN908947.3 2181 2205 nCoV-2019_8_LEFT_1 2 + AGAGTTTCTTAGAGACGGTTGGGA +MN908947.3 2568 2592 nCoV-2019_8_RIGHT_1 2 - GCTTCAACAGCTTCACTAGTAGGT +MN908947.3 2504 2528 nCoV-2019_9_LEFT_2 1 + TTCCCACAGAAGTGTTAACAGAGG +MN908947.3 2505 2529 nCoV-2019_9_LEFT_1 1 + TCCCACAGAAGTGTTAACAGAGGA +MN908947.3 2880 2902 nCoV-2019_9_RIGHT_2 1 - GACAGCATCTGCCACAACACAG +MN908947.3 2882 2904 nCoV-2019_9_RIGHT_1 1 - ATGACAGCATCTGCCACAACAC +MN908947.3 2826 2850 nCoV-2019_10_LEFT_1 2 + TGAGAAGTGCTCTGCCTATACAGT +MN908947.3 3183 3210 nCoV-2019_10_RIGHT_1 2 - TCATCTAACCAATCTTCTTCTTGCTCT +MN908947.3 3144 3166 nCoV-2019_11_LEFT_1 1 + GGAATTTGGTGCCACTTCTGCT +MN908947.3 3507 3531 nCoV-2019_11_RIGHT_1 1 - TCATCAGATTCAACTTGCATGGCA +MN908947.3 3460 3482 nCoV-2019_12_LEFT_1 2 + AAACATGGAGGAGGTGTTGCAG +MN908947.3 3826 3853 nCoV-2019_12_RIGHT_1 2 - TTCACTCTTCATTTCCAAAAAGCTTGA +MN908947.3 3771 3795 nCoV-2019_13_LEFT_1 1 + TCGCACAAATGTCTACTTAGCTGT +MN908947.3 4142 4164 nCoV-2019_13_RIGHT_1 1 - ACCACAGCAGTTAAAACACCCT +MN908947.3 4044 4068 nCoV-2019_14_LEFT_2 2 + TGGCAATCTTCATCCAGATTCTGC +MN908947.3 4054 4077 nCoV-2019_14_LEFT_1 2 + CATCCAGATTCTGCCACTCTTGT +MN908947.3 4402 4424 nCoV-2019_14_RIGHT_2 2 - TGCGTGTTTCTTCTGCATGTGC +MN908947.3 4428 4450 nCoV-2019_14_RIGHT_1 2 - AGTTTCCACACAGACAGGCATT +MN908947.3 4294 4321 nCoV-2019_15_LEFT_1 1 + ACAGTGCTTAAAAAGTGTAAAAGTGCC +MN908947.3 4296 4322 nCoV-2019_15_LEFT_2 1 + AGTGCTTAAAAAGTGTAAAAGTGCCT +MN908947.3 4666 4689 nCoV-2019_15_RIGHT_2 1 - ACTGTAGCTGGCACTTTGAGAGA +MN908947.3 4674 4696 nCoV-2019_15_RIGHT_1 1 - AACAGAAACTGTAGCTGGCACT +MN908947.3 4636 4658 nCoV-2019_16_LEFT_1 2 + AATTTGGAAGAAGCTGCTCGGT +MN908947.3 4995 5017 nCoV-2019_16_RIGHT_1 2 - CACAACTTGCGTGTGGAGGTTA +MN908947.3 4939 4966 nCoV-2019_17_LEFT_1 1 + CTTCTTTCTTTGAGAGAAGTGAGGACT +MN908947.3 5296 5321 nCoV-2019_17_RIGHT_1 1 - TTTGTTGGAGTGTTAACAATGCAGT +MN908947.3 5230 5259 nCoV-2019_18_LEFT_2 2 + TGGAAATACCCACAAGTTAATGGTTTAAC +MN908947.3 5257 5287 nCoV-2019_18_LEFT_1 2 + ACTTCTATTAAATGGGCAGATAACAACTGT +MN908947.3 5620 5643 nCoV-2019_18_RIGHT_2 2 - GCTTGTTTACCACACGTACAAGG +MN908947.3 5620 5644 nCoV-2019_18_RIGHT_1 2 - AGCTTGTTTACCACACGTACAAGG +MN908947.3 5563 5586 nCoV-2019_19_LEFT_1 1 + GCTGTTATGTACATGGGCACACT +MN908947.3 5932 5957 nCoV-2019_19_RIGHT_1 1 - TGTCCAACTTAGGGTCAATTTCTGT +MN908947.3 5867 5894 nCoV-2019_20_LEFT_1 2 + ACAAAGAAAACAGTTACACAACAACCA +MN908947.3 6247 6272 nCoV-2019_20_RIGHT_1 2 - ACGTGGCTTTATTAGTTGCATTGTT +MN908947.3 6167 6196 nCoV-2019_21_LEFT_2 1 + TGGCTATTGATTATAAACACTACACACCC +MN908947.3 6168 6197 nCoV-2019_21_LEFT_1 1 + GGCTATTGATTATAAACACTACACACCCT +MN908947.3 6526 6548 nCoV-2019_21_RIGHT_1 1 - GATCTGTGTGGCCAACCTCTTC +MN908947.3 6528 6550 nCoV-2019_21_RIGHT_2 1 - TAGATCTGTGTGGCCAACCTCT +MN908947.3 6466 6495 nCoV-2019_22_LEFT_1 2 + ACTACCGAAGTTGTAGGAGACATTATACT +MN908947.3 6846 6873 nCoV-2019_22_RIGHT_1 2 - ACAGTATTCTTTGCTATAGTAGTCGGC +MN908947.3 6718 6745 nCoV-2019_23_LEFT_1 1 + ACAACTACTAACATAGTTACACGGTGT +MN908947.3 7092 7117 nCoV-2019_23_RIGHT_1 1 - ACCAGTACAGTAGGTTGCAATAGTG +MN908947.3 7035 7058 nCoV-2019_24_LEFT_1 2 + AGGCATGCCTTCTTACTGTACTG +MN908947.3 7389 7415 nCoV-2019_24_RIGHT_1 2 - ACATTCTAACCATAGCTGAAATCGGG +MN908947.3 7305 7332 nCoV-2019_25_LEFT_1 1 + GCAATTGTTTTTCAGCTATTTTGCAGT +MN908947.3 7671 7694 nCoV-2019_25_RIGHT_1 1 - ACTGTAGTGACAAGTCTCTCGCA +MN908947.3 7626 7651 nCoV-2019_26_LEFT_1 2 + TTGTGATACATTCTGTGCTGGTAGT +MN908947.3 7997 8019 nCoV-2019_26_RIGHT_1 2 - TCCGCACTATCACCAACATCAG +MN908947.3 7943 7968 nCoV-2019_27_LEFT_1 1 + ACTACAGTCAGCTTATGTGTCAACC +MN908947.3 8319 8341 nCoV-2019_27_RIGHT_1 1 - AATACAAGCACCAAGGTCACGG +MN908947.3 8249 8275 nCoV-2019_28_LEFT_1 2 + ACATAGAAGTTACTGGCGATAGTTGT +MN908947.3 8635 8661 nCoV-2019_28_RIGHT_1 2 - TGTTTAGACATGACATGAACAGGTGT +MN908947.3 8595 8619 nCoV-2019_29_LEFT_1 1 + ACTTGTGTTCCTTTTTGTTGCTGC +MN908947.3 8954 8983 nCoV-2019_29_RIGHT_1 1 - AGTGTACTCTATAAGTTTTGATGGTGTGT +MN908947.3 8888 8913 nCoV-2019_30_LEFT_1 2 + GCACAACTAATGGTGACTTTTTGCA +MN908947.3 9245 9271 nCoV-2019_30_RIGHT_1 2 - ACCACTAGTAGATACACAAACACCAG +MN908947.3 9204 9226 nCoV-2019_31_LEFT_1 1 + TTCTGAGTACTGTAGGCACGGC +MN908947.3 9557 9585 nCoV-2019_31_RIGHT_1 1 - ACAGAATAAACACCAGGTAAGAATGAGT +MN908947.3 9477 9502 nCoV-2019_32_LEFT_1 2 + TGGTGAATACAGTCATGTAGTTGCC +MN908947.3 9834 9858 nCoV-2019_32_RIGHT_1 2 - AGCACATCACTACGCAACTTTAGA +MN908947.3 9784 9806 nCoV-2019_33_LEFT_1 1 + ACTTTTGAAGAAGCTGCGCTGT +MN908947.3 10146 10171 nCoV-2019_33_RIGHT_1 1 - TGGACAGTAAACTACGTCATCAAGC +MN908947.3 10076 10099 nCoV-2019_34_LEFT_1 2 + TCCCATCTGGTAAAGTTGAGGGT +MN908947.3 10437 10459 nCoV-2019_34_RIGHT_1 2 - AGTGAAATTGGGCCTCATAGCA +MN908947.3 10362 10384 nCoV-2019_35_LEFT_1 1 + TGTTCGCATTCAACCAGGACAG +MN908947.3 10737 10763 nCoV-2019_35_RIGHT_1 1 - ACTTCATAGCCACAAGGTTAAAGTCA +MN908947.3 10666 10688 nCoV-2019_36_LEFT_1 2 + TTAGCTTGGTTGTACGCTGCTG +MN908947.3 11048 11074 nCoV-2019_36_RIGHT_1 2 - GAACAAAGACCATTGAGTACTCTGGA +MN908947.3 10999 11022 nCoV-2019_37_LEFT_1 1 + ACACACCACTGGTTGTTACTCAC +MN908947.3 11372 11394 nCoV-2019_37_RIGHT_1 1 - GTCCACACTCTCCTAGCACCAT +MN908947.3 11306 11331 nCoV-2019_38_LEFT_1 2 + ACTGTGTTATGTATGCATCAGCTGT +MN908947.3 11668 11693 nCoV-2019_38_RIGHT_1 2 - CACCAAGAGTCAGTCTAAAGTAGCG +MN908947.3 11555 11584 nCoV-2019_39_LEFT_1 1 + AGTATTGCCCTATTTTCTTCATAACTGGT +MN908947.3 11927 11949 nCoV-2019_39_RIGHT_1 1 - TGTAACTGGACACATTGAGCCC +MN908947.3 11863 11889 nCoV-2019_40_LEFT_1 2 + TGCACATCAGTAGTCTTACTCTCAGT +MN908947.3 12234 12256 nCoV-2019_40_RIGHT_1 2 - CATGGCTGCATCACGGTCAAAT +MN908947.3 12110 12133 nCoV-2019_41_LEFT_1 1 + GTTCCCTTCCATCATATGCAGCT +MN908947.3 12465 12490 nCoV-2019_41_RIGHT_1 1 - TGGTATGACAACCATTAGTTTGGCT +MN908947.3 12417 12439 nCoV-2019_42_LEFT_1 2 + TGCAAGAGATGGTTGTGTTCCC +MN908947.3 12779 12802 nCoV-2019_42_RIGHT_1 2 - CCTACCTCCCTTTGTTGTGTTGT +MN908947.3 12710 12732 nCoV-2019_43_LEFT_1 1 + TACGACAGATGTCTTGTGCTGC +MN908947.3 13074 13096 nCoV-2019_43_RIGHT_1 1 - AGCAGCATCTACAGCAAAAGCA +MN908947.3 13005 13027 nCoV-2019_44_LEFT_2 2 + TGCCACAGTACGTCTACAAGCT +MN908947.3 13007 13029 nCoV-2019_44_LEFT_1 2 + CCACAGTACGTCTACAAGCTGG +MN908947.3 13363 13385 nCoV-2019_44_RIGHT_2 2 - CGCAGACGGTACAGACTGTGTT +MN908947.3 13378 13400 nCoV-2019_44_RIGHT_1 2 - AACCTTTCCACATACCGCAGAC +MN908947.3 13307 13336 nCoV-2019_45_LEFT_1 1 + AGTATGTACAAATACCTACAACTTGTGCT +MN908947.3 13319 13344 nCoV-2019_45_LEFT_2 1 + TACCTACAACTTGTGCTAATGACCC +MN908947.3 13660 13689 nCoV-2019_45_RIGHT_2 1 - TTCATGTTGGTAGTTAGAGAAAGTGTGTC +MN908947.3 13669 13699 nCoV-2019_45_RIGHT_1 1 - AAATTGTTTCTTCATGTTGGTAGTTAGAGA +MN908947.3 13599 13621 nCoV-2019_46_LEFT_2 2 + TGTCGCTTCCAAGAAAAGGACG +MN908947.3 13602 13625 nCoV-2019_46_LEFT_1 2 + CGCTTCCAAGAAAAGGACGAAGA +MN908947.3 13961 13984 nCoV-2019_46_RIGHT_2 2 - CACGTTCACCTAAGTTGGCGTAT +MN908947.3 13962 13984 nCoV-2019_46_RIGHT_1 2 - CACGTTCACCTAAGTTGGCGTA +MN908947.3 13918 13946 nCoV-2019_47_LEFT_1 1 + AGGACTGGTATGATTTTGTAGAAAACCC +MN908947.3 14271 14299 nCoV-2019_47_RIGHT_1 1 - AATAACGGTCAAAGAGTTTTAACCTCTC +MN908947.3 14207 14232 nCoV-2019_48_LEFT_1 2 + TGTTGACACTGACTTAACAAAGCCT +MN908947.3 14579 14601 nCoV-2019_48_RIGHT_1 2 - TAGATTACCAGAAGCAGCGTGC +MN908947.3 14545 14570 nCoV-2019_49_LEFT_1 1 + AGGAATTACTTGTGTATGCTGCTGA +MN908947.3 14898 14926 nCoV-2019_49_RIGHT_1 1 - TGACGATGACTTGGTTAGCATTAATACA +MN908947.3 14865 14895 nCoV-2019_50_LEFT_1 2 + GTTGATAAGTACTTTGATTGTTACGATGGT +MN908947.3 15224 15246 nCoV-2019_50_RIGHT_1 2 - TAACATGTTGTGCCAACCACCA +MN908947.3 15171 15193 nCoV-2019_51_LEFT_1 1 + TCAATAGCCGCCACTAGAGGAG +MN908947.3 15538 15560 nCoV-2019_51_RIGHT_1 1 - AGTGCATTAACATTGGCCGTGA +MN908947.3 15481 15503 nCoV-2019_52_LEFT_1 2 + CATCAGGAGATGCCACAACTGC +MN908947.3 15861 15886 nCoV-2019_52_RIGHT_1 2 - GTTGAGAGCAAAATTCATGAGGTCC +MN908947.3 15827 15851 nCoV-2019_53_LEFT_1 1 + AGCAAAATGTTGGACTGAGACTGA +MN908947.3 16186 16209 nCoV-2019_53_RIGHT_1 1 - AGCCTCATAAAACTCAGGTTCCC +MN908947.3 16118 16144 nCoV-2019_54_LEFT_1 2 + TGAGTTAACAGGACACATGTTAGACA +MN908947.3 16485 16510 nCoV-2019_54_RIGHT_1 2 - AACCAAAAACTTGTCCATTAGCACA +MN908947.3 16416 16444 nCoV-2019_55_LEFT_1 1 + ACTCAACTTTACTTAGGAGGTATGAGCT +MN908947.3 16804 16833 nCoV-2019_55_RIGHT_1 1 - GGTGTACTCTCCTATTTGTACTTTACTGT +MN908947.3 16748 16770 nCoV-2019_56_LEFT_1 2 + ACCTAGACCACCACTTAACCGA +MN908947.3 17130 17152 nCoV-2019_56_RIGHT_1 2 - ACACTATGCGAGCAGAAGGGTA +MN908947.3 17065 17087 nCoV-2019_57_LEFT_1 1 + ATTCTACACTCCAGGGACCACC +MN908947.3 17430 17452 nCoV-2019_57_RIGHT_1 1 - GTAATTGAGCAGGGTCGCCAAT +MN908947.3 17381 17406 nCoV-2019_58_LEFT_1 2 + TGATTTGAGTGTTGTCAATGCCAGA +MN908947.3 17738 17761 nCoV-2019_58_RIGHT_1 2 - CTTTTCTCCAAGCAGGGTTACGT +MN908947.3 17674 17697 nCoV-2019_59_LEFT_1 1 + TCACGCATGATGTTTCATCTGCA +MN908947.3 18036 18062 nCoV-2019_59_RIGHT_1 1 - AAGAGTCCTGTTACATTTTCAGCTTG +MN908947.3 17966 17993 nCoV-2019_60_LEFT_1 2 + TGATAGAGACCTTTATGACAAGTTGCA +MN908947.3 18324 18348 nCoV-2019_60_RIGHT_1 2 - GGTACCAACAGCTTCTCTAGTAGC +MN908947.3 18253 18275 nCoV-2019_61_LEFT_1 1 + TGTTTATCACCCGCGAAGAAGC +MN908947.3 18650 18672 nCoV-2019_61_RIGHT_1 1 - ATCACATAGACAACAGGTGCGC +MN908947.3 18596 18618 nCoV-2019_62_LEFT_1 2 + GGCACATGGCTTTGAGTTGACA +MN908947.3 18957 18979 nCoV-2019_62_RIGHT_1 2 - GTTGAACCTTTCTACAAGCCGC +MN908947.3 18896 18918 nCoV-2019_63_LEFT_1 1 + TGTTAAGCGTGTTGACTGGACT +MN908947.3 19275 19297 nCoV-2019_63_RIGHT_1 1 - ACAAACTGCCACCATCACAACC +MN908947.3 19204 19232 nCoV-2019_64_LEFT_1 2 + TCGATAGATATCCTGCTAATTCCATTGT +MN908947.3 19591 19616 nCoV-2019_64_RIGHT_1 2 - AGTCTTGTAAAAGTGTTCCAGAGGT +MN908947.3 19548 19570 nCoV-2019_65_LEFT_1 1 + GCTGGCTTTAGCTTGTGGGTTT +MN908947.3 19911 19939 nCoV-2019_65_RIGHT_1 1 - TGTCAGTCATAGAACAAACACCAATAGT +MN908947.3 19844 19866 nCoV-2019_66_LEFT_1 2 + GGGTGTGGACATTGCTGCTAAT +MN908947.3 20231 20255 nCoV-2019_66_RIGHT_1 2 - TCAATTTCCATTTGACTCCTGGGT +MN908947.3 20172 20200 nCoV-2019_67_LEFT_1 1 + GTTGTCCAACAATTACCTGAAACTTACT +MN908947.3 20542 20572 nCoV-2019_67_RIGHT_1 1 - CAACCTTAGAAACTACAGATAAATCTTGGG +MN908947.3 20472 20496 nCoV-2019_68_LEFT_1 2 + ACAGGTTCATCTAAGTGTGTGTGT +MN908947.3 20867 20890 nCoV-2019_68_RIGHT_1 2 - CTCCTTTATCAGAACCAGCACCA +MN908947.3 20786 20813 nCoV-2019_69_LEFT_1 1 + TGTCGCAAAATATACTCAACTGTGTCA +MN908947.3 21146 21169 nCoV-2019_69_RIGHT_1 1 - TCTTTATAGCCACGGAACCTCCA +MN908947.3 21075 21104 nCoV-2019_70_LEFT_1 2 + ACAAAAGAAAATGACTCTAAAGAGGGTTT +MN908947.3 21427 21455 nCoV-2019_70_RIGHT_1 2 - TGACCTTCTTTTAAAGACATAACAGCAG +MN908947.3 21357 21386 nCoV-2019_71_LEFT_1 1 + ACAAATCCAATTCAGTTGTCTTCCTATTC +MN908947.3 21716 21743 nCoV-2019_71_RIGHT_1 1 - TGGAAAAGAAAGGTAAGAACAAGTCCT +MN908947.3 21658 21682 nCoV-2019_72_LEFT_1 2 + ACACGTGGTGTTTATTACCCTGAC +MN908947.3 22013 22038 nCoV-2019_72_RIGHT_1 2 - ACTCTGAACTCACTTTCCATCCAAC +MN908947.3 21961 21990 nCoV-2019_73_LEFT_1 1 + CAATTTTGTAATGATCCATTTTTGGGTGT +MN908947.3 22324 22346 nCoV-2019_73_RIGHT_1 1 - CACCAGCTGTCCAACCTGAAGA +MN908947.3 22262 22290 nCoV-2019_74_LEFT_1 2 + ACATCACTAGGTTTCAAACTTTACTTGC +MN908947.3 22626 22650 nCoV-2019_74_RIGHT_1 2 - GCAACACAGTTGCTGATTCTCTTC +MN908947.3 22516 22542 nCoV-2019_75_LEFT_1 1 + AGAGTCCAACCAACAGAATCTATTGT +MN908947.3 22877 22903 nCoV-2019_75_RIGHT_1 1 - ACCACCAACCTTAGAATCAAGATTGT +MN908947.3 22797 22819 nCoV-2019_76_LEFT_1 2 + AGGGCAAACTGGAAAGATTGCT +MN908947.3 22798 22821 nCoV-2019_76_LEFT_2 2 + GGGCAAACTGGAAAGATTGCTGA +MN908947.3 23189 23212 nCoV-2019_76_RIGHT_2 2 - ACCTGTGCCTGTTAAACCATTGA +MN908947.3 23192 23214 nCoV-2019_76_RIGHT_1 2 - ACACCTGTGCCTGTTAAACCAT +MN908947.3 23122 23144 nCoV-2019_77_LEFT_1 1 + CCAGCAACTGTTTGTGGACCTA +MN908947.3 23500 23522 nCoV-2019_77_RIGHT_1 1 - CAGCCCCTATTAAACAGCCTGC +MN908947.3 23443 23466 nCoV-2019_78_LEFT_1 2 + CAACTTACTCCTACTTGGCGTGT +MN908947.3 23822 23847 nCoV-2019_78_RIGHT_1 2 - TGTGTACAAAAACTGCCATATTGCA +MN908947.3 23789 23812 nCoV-2019_79_LEFT_1 1 + GTGGTGATTCAACTGAATGCAGC +MN908947.3 24145 24169 nCoV-2019_79_RIGHT_1 1 - CATTTCATCTGTGAGCAAAGGTGG +MN908947.3 24078 24100 nCoV-2019_80_LEFT_1 2 + TTGCCTTGGTGATATTGCTGCT +MN908947.3 24443 24467 nCoV-2019_80_RIGHT_1 2 - TGGAGCTAAGTTGTTTAACAAGCG +MN908947.3 24391 24416 nCoV-2019_81_LEFT_1 1 + GCACTTGGAAAACTTCAAGATGTGG +MN908947.3 24765 24789 nCoV-2019_81_RIGHT_1 1 - GTGAAGTTCTTTTCTTGTGCAGGG +MN908947.3 24696 24721 nCoV-2019_82_LEFT_1 2 + GGGCTATCATCTTATGTCCTTCCCT +MN908947.3 25052 25076 nCoV-2019_82_RIGHT_1 2 - TGCCAGAGATGTCACCTAAATCAA +MN908947.3 24978 25003 nCoV-2019_83_LEFT_1 1 + TCCTTTGCAACCTGAATTAGACTCA +MN908947.3 25347 25369 nCoV-2019_83_RIGHT_1 1 - TTTGACTCCTTTGAGCACTGGC +MN908947.3 25279 25301 nCoV-2019_84_LEFT_1 2 + TGCTGTAGTTGTCTCAAGGGCT +MN908947.3 25646 25673 nCoV-2019_84_RIGHT_1 2 - AGGTGTGAGTAAACTGTTACAAACAAC +MN908947.3 25601 25623 nCoV-2019_85_LEFT_1 1 + ACTAGCACTCTCCAAGGGTGTT +MN908947.3 25969 25994 nCoV-2019_85_RIGHT_1 1 - ACACAGTCTTTTACTCCAGATTCCC +MN908947.3 25902 25924 nCoV-2019_86_LEFT_1 2 + TCAGGTGATGGCACAACAAGTC +MN908947.3 26290 26315 nCoV-2019_86_RIGHT_1 2 - ACGAAAGCAAGAAAAAGAAGTACGC +MN908947.3 26197 26219 nCoV-2019_87_LEFT_1 1 + CGACTACTAGCGTGCCTTTGTA +MN908947.3 26566 26590 nCoV-2019_87_RIGHT_1 1 - ACTAGGTTCCATTGTTCAAGGAGC +MN908947.3 26520 26542 nCoV-2019_88_LEFT_1 2 + CCATGGCAGATTCCAACGGTAC +MN908947.3 26890 26913 nCoV-2019_88_RIGHT_1 2 - TGGTCAGAATAGTGCCATGGAGT +MN908947.3 26835 26857 nCoV-2019_89_LEFT_2 1 + GTACGCGTTCCATGTGGTCATT +MN908947.3 26838 26860 nCoV-2019_89_LEFT_1 1 + CGCGTTCCATGTGGTCATTCAA +MN908947.3 27190 27215 nCoV-2019_89_RIGHT_2 1 - ACGAGATGAAACATCTGTTGTCACT +MN908947.3 27202 27227 nCoV-2019_89_RIGHT_1 1 - ACCTGAAAGTCAACGAGATGAAACA +MN908947.3 27141 27164 nCoV-2019_90_LEFT_1 2 + ACACAGACCATTCCAGTAGCAGT +MN908947.3 27511 27533 nCoV-2019_90_RIGHT_1 2 - TGAAATGGTGAATTGCCCTCGT +MN908947.3 27446 27471 nCoV-2019_91_LEFT_1 1 + TCACTACCAAGAGTGTGTTAGAGGT +MN908947.3 27825 27854 nCoV-2019_91_RIGHT_1 1 - TTCAAGTGAGAACCAAAAGATAATAAGCA +MN908947.3 27784 27808 nCoV-2019_92_LEFT_1 2 + TTTGTGCTTTTTAGCCTTTCTGCT +MN908947.3 28145 28172 nCoV-2019_92_RIGHT_1 2 - AGGTTCCTGGCAATTAATTGTAAAAGG +MN908947.3 28081 28104 nCoV-2019_93_LEFT_1 1 + TGAGGCTGGTTCTAAATCACCCA +MN908947.3 28442 28464 nCoV-2019_93_RIGHT_1 1 - AGGTCTTCCTTGCCATGTTGAG +MN908947.3 28394 28416 nCoV-2019_94_LEFT_1 2 + GGCCCCAAGGTTTACCCAATAA +MN908947.3 28756 28779 nCoV-2019_94_RIGHT_1 2 - TTTGGCAATGTTGTTCCTTGAGG +MN908947.3 28677 28699 nCoV-2019_95_LEFT_1 1 + TGAGGGAGCCTTGAATACACCA +MN908947.3 29041 29063 nCoV-2019_95_RIGHT_1 1 - CAGTACGTTTTTGCCGAGGCTT +MN908947.3 28985 29007 nCoV-2019_96_LEFT_1 2 + GCCAACAACAACAAGGCCAAAC +MN908947.3 29356 29378 nCoV-2019_96_RIGHT_1 2 - TAGGCTCTGTTGGTGGGAATGT +MN908947.3 29288 29316 nCoV-2019_97_LEFT_1 1 + TGGATGACAAAGATCCAAATTTCAAAGA +MN908947.3 29665 29693 nCoV-2019_97_RIGHT_1 1 - ACACACTGATTAAAGATTGCTATGTGAG +MN908947.3 29486 29510 nCoV-2019_98_LEFT_1 2 + AACAATTGCAACAATCCATGAGCA +MN908947.3 29836 29866 nCoV-2019_98_RIGHT_1 2 - TTCTCCTAAGAAGCTATTAAAATCACATGG diff --git a/schemes/sars-cov-2/artic/400/v3.0.0/primer.svg b/schemes/sars-cov-2/artic/400/v3.0.0/primer.svg new file mode 100644 index 0000000..90dc4fc --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v3.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/artic/v3/reference.fasta b/schemes/sars-cov-2/artic/400/v3.0.0/reference.fasta similarity index 100% rename from sars-cov-2/artic/v3/reference.fasta rename to schemes/sars-cov-2/artic/400/v3.0.0/reference.fasta diff --git a/schemes/sars-cov-2/artic/400/v3.0.0/scheme.bed b/schemes/sars-cov-2/artic/400/v3.0.0/scheme.bed new file mode 100644 index 0000000..863bd11 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v3.0.0/scheme.bed @@ -0,0 +1,218 @@ +MN908947.3 30 54 nCoV-2019_1_LEFT_1 1 + +MN908947.3 385 410 nCoV-2019_1_RIGHT_1 1 - +MN908947.3 320 342 nCoV-2019_2_LEFT_1 2 + +MN908947.3 704 726 nCoV-2019_2_RIGHT_1 2 - 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+MN908947.3 24391 24416 nCoV-2019_81_LEFT_1 1 + +MN908947.3 24765 24789 nCoV-2019_81_RIGHT_1 1 - +MN908947.3 24696 24721 nCoV-2019_82_LEFT_1 2 + +MN908947.3 25052 25076 nCoV-2019_82_RIGHT_1 2 - +MN908947.3 24978 25003 nCoV-2019_83_LEFT_1 1 + +MN908947.3 25347 25369 nCoV-2019_83_RIGHT_1 1 - +MN908947.3 25279 25301 nCoV-2019_84_LEFT_1 2 + +MN908947.3 25646 25673 nCoV-2019_84_RIGHT_1 2 - +MN908947.3 25601 25623 nCoV-2019_85_LEFT_1 1 + +MN908947.3 25969 25994 nCoV-2019_85_RIGHT_1 1 - +MN908947.3 25902 25924 nCoV-2019_86_LEFT_1 2 + +MN908947.3 26290 26315 nCoV-2019_86_RIGHT_1 2 - +MN908947.3 26197 26219 nCoV-2019_87_LEFT_1 1 + +MN908947.3 26566 26590 nCoV-2019_87_RIGHT_1 1 - +MN908947.3 26520 26542 nCoV-2019_88_LEFT_1 2 + +MN908947.3 26890 26913 nCoV-2019_88_RIGHT_1 2 - +MN908947.3 26835 26857 nCoV-2019_89_LEFT_2 1 + +MN908947.3 26838 26860 nCoV-2019_89_LEFT_1 1 + +MN908947.3 27190 27215 nCoV-2019_89_RIGHT_2 1 - +MN908947.3 27202 27227 nCoV-2019_89_RIGHT_1 1 - +MN908947.3 27141 27164 nCoV-2019_90_LEFT_1 2 + +MN908947.3 27511 27533 nCoV-2019_90_RIGHT_1 2 - +MN908947.3 27446 27471 nCoV-2019_91_LEFT_1 1 + +MN908947.3 27825 27854 nCoV-2019_91_RIGHT_1 1 - +MN908947.3 27784 27808 nCoV-2019_92_LEFT_1 2 + +MN908947.3 28145 28172 nCoV-2019_92_RIGHT_1 2 - +MN908947.3 28081 28104 nCoV-2019_93_LEFT_1 1 + +MN908947.3 28442 28464 nCoV-2019_93_RIGHT_1 1 - +MN908947.3 28394 28416 nCoV-2019_94_LEFT_1 2 + +MN908947.3 28756 28779 nCoV-2019_94_RIGHT_1 2 - +MN908947.3 28677 28699 nCoV-2019_95_LEFT_1 1 + +MN908947.3 29041 29063 nCoV-2019_95_RIGHT_1 1 - +MN908947.3 28985 29007 nCoV-2019_96_LEFT_1 2 + +MN908947.3 29356 29378 nCoV-2019_96_RIGHT_1 2 - +MN908947.3 29288 29316 nCoV-2019_97_LEFT_1 1 + +MN908947.3 29665 29693 nCoV-2019_97_RIGHT_1 1 - +MN908947.3 29486 29510 nCoV-2019_98_LEFT_1 2 + +MN908947.3 29836 29866 nCoV-2019_98_RIGHT_1 2 - diff --git a/schemes/sars-cov-2/artic/400/v4.0.0/info.yml b/schemes/sars-cov-2/artic/400/v4.0.0/info.yml new file mode 100644 index 0000000..e76ad70 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v4.0.0/info.yml @@ -0,0 +1,22 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: artic +amplicon_size: 400 +version: v4.0.0 +derived_from: sars-cov-2/artic/400/v3.0.0 +aliases: +- ARTIC/V4.0 +developers: +- ARTIC network +vendors: +- organisation_name: IDT + kit_name: '10011442' +- organisation_name: Eurofins + home_page: https://eurofinsgenomics.com +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v4 +source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v4.0.0 +citations: +- https://doi.org/10.1101%2F2020.09.04.283077 +license: CC-BY-SA-4.0 +primer_checksum: primaschema:d5a3ff14f651c8c1 +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/artic/400/v4.0.0/primer.bed b/schemes/sars-cov-2/artic/400/v4.0.0/primer.bed new file mode 100644 index 0000000..f0d1b4b --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v4.0.0/primer.bed @@ -0,0 +1,198 @@ +MN908947.3 25 50 SARS-CoV-2_1_LEFT_1 1 + AACAAACCAACCAACTTTCGATCTC +MN908947.3 408 431 SARS-CoV-2_1_RIGHT_1 1 - CTTCTACTAAGCCACAAGTGCCA +MN908947.3 324 344 SARS-CoV-2_2_LEFT_1 2 + TTTACAGGTTCGCGACGTGC +MN908947.3 705 727 SARS-CoV-2_2_RIGHT_1 2 - ATAAGGATCAGTGCCAAGCTCG +MN908947.3 644 666 SARS-CoV-2_3_LEFT_1 1 + GTAATAAAGGAGCTGGTGGCCA +MN908947.3 1017 1044 SARS-CoV-2_3_RIGHT_1 1 - GCCAATTTAATTTCAAAAGGTGTCTGC +MN908947.3 944 966 SARS-CoV-2_4_LEFT_1 2 + GTGTATACTGCTGCCGTGAACA +MN908947.3 1337 1362 SARS-CoV-2_4_RIGHT_1 2 - ACAACAGCATTTTGGGGTAAGTAAC +MN908947.3 1245 1266 SARS-CoV-2_5_LEFT_1 1 + TGAAACTTCATGGCAGACGGG +MN908947.3 1623 1650 SARS-CoV-2_5_RIGHT_1 1 - TTGATGTTGACTTTCTCTTTTTGGAGT +MN908947.3 1540 1562 SARS-CoV-2_6_LEFT_1 2 + CGTGCTAGCGCTAACATAGGTT +MN908947.3 1925 1948 SARS-CoV-2_6_RIGHT_1 2 - AACACGCACAGAATTTTGAGCAG +MN908947.3 1851 1875 SARS-CoV-2_7_LEFT_1 1 + ACTGAGTCCTCTTTATGCATTTGC +MN908947.3 2228 2250 SARS-CoV-2_7_RIGHT_1 1 - CCACCGACAATTTCACAAGCAC +MN908947.3 2154 2180 SARS-CoV-2_8_LEFT_1 2 + GCTTGAAGAGAAGTTTAAGGAAGGTG +MN908947.3 2544 2571 SARS-CoV-2_8_RIGHT_1 2 - GGTTGTTCTAATGGTTGTAAATCACCA +MN908947.3 2483 2508 SARS-CoV-2_9_LEFT_1 1 + TCTTCTTAGAGGGAGAAACACTTCC +MN908947.3 2861 2885 SARS-CoV-2_9_RIGHT_1 1 - CACAGGCGAACTCATTTACTTCTG +MN908947.3 2826 2850 SARS-CoV-2_10_LEFT_1 2 + TGAGAAGTGCTCTGCCTATACAGT +MN908947.3 3183 3210 SARS-CoV-2_10_RIGHT_1 2 - TCATCTAACCAATCTTCTTCTTGCTCT +MN908947.3 3078 3102 SARS-CoV-2_11_LEFT_1 1 + AGAAGAGTTTGAGCCATCAACTCA +MN908947.3 3470 3492 SARS-CoV-2_11_RIGHT_1 1 - TTTAAGGCTCCTGCAACACCTC +MN908947.3 3390 3412 SARS-CoV-2_12_LEFT_1 2 + TGCAGACATTGTGGAAGAAGCT +MN908947.3 3769 3794 SARS-CoV-2_12_RIGHT_1 2 - CAGCTAAGTAGACATTTGTGCGAAC +MN908947.3 3683 3705 SARS-CoV-2_13_LEFT_1 1 + AGCACGAAGTTCTACTTGCACC +MN908947.3 4067 4093 SARS-CoV-2_13_RIGHT_1 1 - GATGTCAATGTCACTAACAAGAGTGG +MN908947.3 3992 4018 SARS-CoV-2_14_LEFT_1 2 + TGGAAGAAACTAAGTTCCTCACAGAA +MN908947.3 4387 4409 SARS-CoV-2_14_RIGHT_1 2 - CATGTGCAAGCATTTCTCGCAA +MN908947.3 4312 4339 SARS-CoV-2_15_LEFT_1 1 + AAAAGTGCCTTTTACATTCTACCATCT +MN908947.3 4685 4710 SARS-CoV-2_15_RIGHT_1 1 - GCATCAGGTGAAGAAACAGAAACTG +MN908947.3 4620 4648 SARS-CoV-2_16_LEFT_1 2 + TGTAACACATGGCTTAAATTTGGAAGAA +MN908947.3 4995 5017 SARS-CoV-2_16_RIGHT_1 2 - CACAACTTGCGTGTGGAGGTTA +MN908947.3 4923 4953 SARS-CoV-2_17_LEFT_1 1 + TGACAATCTTAAGACACTTCTTTCTTTGAG +MN908947.3 5302 5331 SARS-CoV-2_17_RIGHT_1 1 - TTCAACTCTATTTGTTGGAGTGTTAACAA +MN908947.3 5230 5259 SARS-CoV-2_18_LEFT_1 2 + TGGAAATACCCACAAGTTAATGGTTTAAC +MN908947.3 5620 5643 SARS-CoV-2_18_RIGHT_1 2 - GCTTGTTTACCACACGTACAAGG +MN908947.3 5561 5584 SARS-CoV-2_19_LEFT_1 1 + AAGCTGTTATGTACATGGGCACA +MN908947.3 5932 5957 SARS-CoV-2_19_RIGHT_1 1 - TGTCCAACTTAGGGTCAATTTCTGT +MN908947.3 5867 5894 SARS-CoV-2_20_LEFT_1 2 + ACAAAGAAAACAGTTACACAACAACCA +MN908947.3 6247 6272 SARS-CoV-2_20_RIGHT_1 2 - ACGTGGCTTTATTAGTTGCATTGTT +MN908947.3 6184 6210 SARS-CoV-2_21_LEFT_1 1 + CACTACACACCCTCTTTTAAGAAAGG +MN908947.3 6553 6582 SARS-CoV-2_21_RIGHT_1 1 - GTAAGACTAGAATTGTCTACATAAGCAGC +MN908947.3 6478 6507 SARS-CoV-2_22_LEFT_1 2 + GTAGGAGACATTATACTTAAACCAGCAAA +MN908947.3 6859 6885 SARS-CoV-2_22_RIGHT_1 2 - CCGACACTCTTAACAGTATTCTTTGC +MN908947.3 6747 6776 SARS-CoV-2_23_LEFT_1 1 + AAACCGTGTTTGTACTAATTATATGCCTT +MN908947.3 7122 7148 SARS-CoV-2_23_RIGHT_1 1 - AACCACTAAGACAAACACTACAAGGT +MN908947.3 7057 7084 SARS-CoV-2_24_LEFT_1 2 + GGTTACAGAGAAGGCTATTTGAACTCT +MN908947.3 7440 7467 SARS-CoV-2_24_RIGHT_1 2 - ACAACATGCACATAACTTTTCCATACA +MN908947.3 7381 7403 SARS-CoV-2_25_LEFT_1 1 + CAAATGGCCCCGATTTCAGCTA +MN908947.3 7747 7770 SARS-CoV-2_25_RIGHT_1 1 - TGGATGGAACCATTCTTCACTGT +MN908947.3 7672 7695 SARS-CoV-2_26_LEFT_1 2 + GCGAGAGACTTGTCACTACAGTT +MN908947.3 8063 8092 SARS-CoV-2_26_RIGHT_1 2 - GAGTTTTTCCATTGGTACGTTAAAAGTTG +MN908947.3 7997 8019 SARS-CoV-2_27_LEFT_1 1 + CTGATGTTGGTGATAGTGCGGA +MN908947.3 8370 8395 SARS-CoV-2_27_RIGHT_1 1 - AGCAATGTTGTGACTTTTTGCTACC +MN908947.3 8304 8326 SARS-CoV-2_28_LEFT_1 2 + TGAAAACATGACACCCCGTGAC +MN908947.3 8691 8714 SARS-CoV-2_28_RIGHT_1 2 - TGACACCACCATCAATAGCCTTG +MN908947.3 8596 8619 SARS-CoV-2_29_LEFT_1 1 + CTTGTGTTCCTTTTTGTTGCTGC +MN908947.3 8990 9013 SARS-CoV-2_29_RIGHT_1 1 - AGCCAAAACACAAGCTGATGTTG +MN908947.3 8919 8944 SARS-CoV-2_30_LEFT_1 2 + ACCTAGAGTTTTTAGTGCAGTTGGT +MN908947.3 9306 9329 SARS-CoV-2_30_RIGHT_1 2 - CTACACCACAGAAAACTCCTGGT +MN908947.3 9168 9192 SARS-CoV-2_31_LEFT_1 1 + CCTTGAAGGTTCTGTTAGAGTGGT +MN908947.3 9535 9564 SARS-CoV-2_31_RIGHT_1 1 - AATGAGTAAACTGGTGTTAAACAGAGTAC +MN908947.3 9470 9497 SARS-CoV-2_32_LEFT_1 2 + GAGCTTTTGGTGAATACAGTCATGTAG +MN908947.3 9842 9866 SARS-CoV-2_32_RIGHT_1 2 - GAGGTAATAGCACATCACTACGCA +MN908947.3 9782 9805 SARS-CoV-2_33_LEFT_1 1 + GTACTTTTGAAGAAGCTGCGCTG +MN908947.3 10150 10176 SARS-CoV-2_33_RIGHT_1 1 - TGTCTTGGACAGTAAACTACGTCATC +MN908947.3 10076 10099 SARS-CoV-2_34_LEFT_1 2 + TCCCATCTGGTAAAGTTGAGGGT +MN908947.3 10465 10491 SARS-CoV-2_34_RIGHT_1 2 - CCACATGAACCATTAAGGAATGAACC +MN908947.3 10393 10419 SARS-CoV-2_35_LEFT_1 1 + GTGTTAGCTTGTTACAATGGTTCACC +MN908947.3 10785 10810 SARS-CoV-2_35_RIGHT_1 1 - AGGTCCTAGTATGTCAACATGGTCT +MN908947.3 10713 10742 SARS-CoV-2_36_LEFT_1 2 + CAATCGATTTACCACAACTCTTAATGACT +MN908947.3 11092 11116 SARS-CoV-2_36_RIGHT_1 2 - ACCCATAGCAAAAGGTAAAAAGGC +MN908947.3 11000 11023 SARS-CoV-2_37_LEFT_1 1 + CACACCACTGGTTGTTACTCACA +MN908947.3 11388 11414 SARS-CoV-2_37_RIGHT_1 1 - GTGTCAAGACATTCATAAGTGTCCAC +MN908947.3 11305 11330 SARS-CoV-2_38_LEFT_1 2 + GACTGTGTTATGTATGCATCAGCTG +MN908947.3 11689 11720 SARS-CoV-2_38_RIGHT_1 2 - CCTGTGTAGAAACTAAGTAATCATAAACACC +MN908947.3 11624 11651 SARS-CoV-2_39_LEFT_1 1 + GCTATTTTTGTACTTGTTACTTTGGCC +MN908947.3 12011 12033 SARS-CoV-2_39_RIGHT_1 1 - CCCTGCATGGAAAGCAAAACAG +MN908947.3 11937 11963 SARS-CoV-2_40_LEFT_1 2 + TGTCCAGTTACACAATGACATTCTCT +MN908947.3 12317 12339 SARS-CoV-2_40_RIGHT_1 2 - ACTTTTGCCCTCTTGTCCTCAG +MN908947.3 12234 12255 SARS-CoV-2_41_LEFT_1 1 + ATTTGACCGTGATGCAGCCAT +MN908947.3 12618 12643 SARS-CoV-2_41_RIGHT_1 1 - AAGAGGCCATGCTAAATTAGGTGAA +MN908947.3 12519 12546 SARS-CoV-2_42_LEFT_1 2 + TGGTACAACATTTACTTATGCATCAGC +MN908947.3 12895 12920 SARS-CoV-2_42_RIGHT_1 2 - TGTCTGTAACAAACCTACAAGGTGG +MN908947.3 12831 12856 SARS-CoV-2_43_LEFT_1 1 + GGATTTGAAATGGGCTAGATTCCCT +MN908947.3 13218 13240 SARS-CoV-2_43_RIGHT_1 1 - CGATGCACCACCAAAGGATTCT +MN908947.3 13124 13148 SARS-CoV-2_44_LEFT_1 2 + GGGGACAACCAATCACTAATTGTG +MN908947.3 13506 13528 SARS-CoV-2_44_RIGHT_1 2 - CATCAGTACTAGTGCCTGTGCC +MN908947.3 13463 13485 SARS-CoV-2_45_LEFT_1 1 + TAAACGGGTTTGCGGTGTAAGT +MN908947.3 13833 13859 SARS-CoV-2_45_RIGHT_1 1 - TCACAATTACCTTCATCAAAATGCCT +MN908947.3 13752 13775 SARS-CoV-2_46_LEFT_1 2 + AGAATAGACGGTGACATGGTACC +MN908947.3 14120 14144 SARS-CoV-2_46_RIGHT_1 2 - TCTACAACAGGAACTCCACTACCT +MN908947.3 14045 14075 SARS-CoV-2_47_LEFT_1 1 + TGGTGTACTGACATTAGATAATCAAGATCT +MN908947.3 14428 14457 SARS-CoV-2_47_RIGHT_1 1 - TGGAACACCATCAACAAATATTTTTCTCA +MN908947.3 14338 14362 SARS-CoV-2_48_LEFT_1 2 + ACTGTTTGGATGACAGATGCATTC +MN908947.3 14717 14743 SARS-CoV-2_48_RIGHT_1 2 - CAGAACTTCCTTCCTTAAAGAAACCC +MN908947.3 14647 14674 SARS-CoV-2_49_LEFT_1 1 + ACAATGTTGCTTTTCAAACTGTCAAAC +MN908947.3 15023 15050 SARS-CoV-2_49_RIGHT_1 1 - GGGATGACATTACGTTTTGTATATGCG +MN908947.3 14953 14983 SARS-CoV-2_50_LEFT_1 2 + CATTTAATAAATGGGGTAAGGCTAGACTTT +MN908947.3 15336 15358 SARS-CoV-2_50_RIGHT_1 2 - GAGCAAGAACAAGTGAGGCCAT +MN908947.3 15214 15237 SARS-CoV-2_51_LEFT_1 1 + GCAAATTCTATGGTGGTTGGCAC +MN908947.3 15596 15619 SARS-CoV-2_51_RIGHT_1 1 - GTCTGTGTTGTAAATTGCGGACA +MN908947.3 15535 15557 SARS-CoV-2_52_LEFT_1 2 + CTGTCACGGCCAATGTTAATGC +MN908947.3 15917 15941 SARS-CoV-2_52_RIGHT_1 2 - GGATCTGGGTAAGGAAGGTACACA +MN908947.3 15855 15881 SARS-CoV-2_53_LEFT_1 1 + ACTAAAGGACCTCATGAATTTTGCTC +MN908947.3 16239 16260 SARS-CoV-2_53_RIGHT_1 1 - GCAAAGAACACAAGCCCCAAC +MN908947.3 16112 16137 SARS-CoV-2_54_LEFT_1 2 + ACATGATGAGTTAACAGGACACATG +MN908947.3 16483 16508 SARS-CoV-2_54_RIGHT_1 2 - CCAAAAACTTGTCCATTAGCACACA +MN908947.3 16386 16408 SARS-CoV-2_55_LEFT_1 1 + AATGCTCCAGGTTGTGATGTCA +MN908947.3 16767 16796 SARS-CoV-2_55_RIGHT_1 1 - ACACGATAACCAGTAAAGACATAATTTCG +MN908947.3 16692 16714 SARS-CoV-2_56_LEFT_1 2 + ACTGTACGTGAAGTGCTGTCTG +MN908947.3 17082 17105 SARS-CoV-2_56_RIGHT_1 2 - TGACTCTTACCAGTACCAGGTGG +MN908947.3 16986 17013 SARS-CoV-2_57_LEFT_1 1 + GGCTTATACCCAACACTCAATATCTCA +MN908947.3 17381 17405 SARS-CoV-2_57_RIGHT_1 1 - CTGGCATTGACAACACTCAAATCA +MN908947.3 17323 17345 SARS-CoV-2_58_LEFT_1 2 + TGCCTGAGACGACAGCAGATAT +MN908947.3 17688 17711 SARS-CoV-2_58_RIGHT_1 2 - TGTGGCCTGTTAATTGCAGATGA +MN908947.3 17615 17642 SARS-CoV-2_59_LEFT_1 1 + GCTTAAAGCACATAAAGACAAATCAGC +MN908947.3 17997 18022 SARS-CoV-2_59_RIGHT_1 1 - TCCTACGTGGAATTTCAAGACTTGT +MN908947.3 17911 17939 SARS-CoV-2_60_LEFT_1 2 + ACAGATTTAATGTTGCTATTACCAGAGC +MN908947.3 18307 18328 SARS-CoV-2_60_RIGHT_1 2 - TAGCATGACACCCCTCGACAT +MN908947.3 18244 18267 SARS-CoV-2_61_LEFT_1 1 + ACCCTAACATGTTTATCACCCGC +MN908947.3 18624 18652 SARS-CoV-2_61_RIGHT_1 1 - GCTCAGGTCCTATTTTCACAAAATACTT +MN908947.3 18550 18578 SARS-CoV-2_62_LEFT_1 2 + GTGACACACTTAAAAATCTCTCTGACAG +MN908947.3 18936 18961 SARS-CoV-2_62_RIGHT_1 2 - CCGCATTAATCTTCAGTTCATCACC +MN908947.3 18869 18891 SARS-CoV-2_63_LEFT_1 1 + TAGGTGTCTAGCTGTCCACGAG +MN908947.3 19252 19277 SARS-CoV-2_63_RIGHT_1 1 - CCAGGCAAGTTAAGGTTAGATAGCA +MN908947.3 19183 19208 SARS-CoV-2_64_LEFT_1 2 + GCCTATTTTGGAATTGCAATGTCGA +MN908947.3 19558 19586 SARS-CoV-2_64_RIGHT_1 2 - GTATCAAATTGTTTGTAAACCCACAAGC +MN908947.3 19485 19513 SARS-CoV-2_65_LEFT_1 1 + GTCTGTAGACATCATGCTAATGAGTACA +MN908947.3 19877 19901 SARS-CoV-2_65_RIGHT_1 1 - GCTGGAGCATCTCTTTTGTAGTCC +MN908947.3 19810 19836 SARS-CoV-2_66_LEFT_1 2 + AACCAGTACCAGAGGTGAAAATACTC +MN908947.3 20186 20216 SARS-CoV-2_66_RIGHT_1 2 - TTTCTACTCTGAGTAAAGTAAGTTTCAGGT +MN908947.3 20090 20117 SARS-CoV-2_67_LEFT_1 1 + CAAACAAGCTAGTCTTAATGGAGTCAC +MN908947.3 20472 20497 SARS-CoV-2_67_RIGHT_1 1 - AACACACACACTTAGATGAACCTGT +MN908947.3 20377 20405 SARS-CoV-2_68_LEFT_1 2 + GACTAGCTAAACGTTTTAAGGAATCACC +MN908947.3 20766 20792 SARS-CoV-2_68_RIGHT_1 2 - GCGACATTCATCATTATGCCTTTAGG +MN908947.3 20677 20699 SARS-CoV-2_69_LEFT_1 1 + CGGGTGTTGCTATGCCTAATCT +MN908947.3 21050 21080 SARS-CoV-2_69_RIGHT_1 1 - TTTGTAACATTTTTAGTCTTAGGGTCGTAC +MN908947.3 20988 21013 SARS-CoV-2_70_LEFT_1 2 + TTGATTGGTGATTGTGCAACTGTAC +MN908947.3 21358 21387 SARS-CoV-2_70_RIGHT_1 2 - AGAATAGGAAGACAACTGAATTGGATTTG +MN908947.3 21294 21316 SARS-CoV-2_71_LEFT_1 1 + GGCAAACCACGCGAACAAATAG +MN908947.3 21675 21700 SARS-CoV-2_71_RIGHT_1 1 - TGAGGATCTGAAAACTTTGTCAGGG +MN908947.3 21532 21561 SARS-CoV-2_72_LEFT_1 2 + GTGATGTTCTTGTTAACAACTAAACGAAC +MN908947.3 21904 21933 SARS-CoV-2_72_RIGHT_1 2 - GTAGCGTTATTAACAATAAGTAGGGACTG +MN908947.3 21865 21889 SARS-CoV-2_73_LEFT_1 1 + AGAGGCTGGATTTTTGGTACTACT +MN908947.3 22247 22274 SARS-CoV-2_73_RIGHT_1 1 - ACCTAGTGATGTTAATACCTATTGGCA +MN908947.3 22091 22113 SARS-CoV-2_74_LEFT_1 2 + TGGACCTTGAAGGAAAACAGGG +MN908947.3 22474 22503 SARS-CoV-2_74_RIGHT_1 2 - TGATAGATTCCTTTTTCTACAGTGAAGGA +MN908947.3 22402 22428 SARS-CoV-2_75_LEFT_1 1 + GAAAATGGAACCATTACAGATGCTGT +MN908947.3 22785 22805 SARS-CoV-2_75_RIGHT_1 1 - TTTGCCCTGGAGCGATTTGT +MN908947.3 22648 22677 SARS-CoV-2_76_LEFT_1 2 + GCTGATTATTCTGTCCTATATAATTCCGC +MN908947.3 23028 23057 SARS-CoV-2_76_RIGHT_1 2 - GTTGGAAACCATATGATTGTAAAGGAAAG +MN908947.3 22944 22974 SARS-CoV-2_77_LEFT_1 1 + CAAACCTTTTGAGAGAGATATTTCAACTGA +MN908947.3 23327 23351 SARS-CoV-2_77_RIGHT_1 1 - CACTGACACCACCAAAAGAACATG +MN908947.3 23219 23246 SARS-CoV-2_78_LEFT_1 2 + CTGAGTCTAACAAAAAGTTTCTGCCTT +MN908947.3 23611 23635 SARS-CoV-2_78_RIGHT_1 2 - GGATTGACTAGCTACACTACGTGC +MN908947.3 23553 23575 SARS-CoV-2_79_LEFT_1 1 + ACCCATTGGTGCAGGTATATGC +MN908947.3 23927 23955 SARS-CoV-2_79_RIGHT_1 1 - CCAAAATCTTTAATTGGTGGTGTTTTGT +MN908947.3 23853 23876 SARS-CoV-2_80_LEFT_1 2 + CCGTGCTTTAACTGGAATAGCTG +MN908947.3 24233 24258 SARS-CoV-2_80_RIGHT_1 2 - GCAAATGGTATTTGTAATGCAGCAC +MN908947.3 24171 24194 SARS-CoV-2_81_LEFT_1 1 + TGCTCAATACACTTCTGCACTGT +MN908947.3 24545 24567 SARS-CoV-2_81_RIGHT_1 1 - TGAAGTCTGCCTGTGATCAACC +MN908947.3 24426 24448 SARS-CoV-2_82_LEFT_1 2 + TGCACAAGCTTTAAACACGCTT +MN908947.3 24814 24836 SARS-CoV-2_82_RIGHT_1 2 - CACGAGGAAAGTGTGCTTTTCC +MN908947.3 24750 24772 SARS-CoV-2_83_LEFT_1 1 + GCATGTGACTTATGTCCCTGCA +MN908947.3 25122 25150 SARS-CoV-2_83_RIGHT_1 1 - AGATTCATTTAAATTCTTGGCAACCTCA +MN908947.3 25051 25076 SARS-CoV-2_84_LEFT_1 2 + GTTGATTTAGGTGACATCTCTGGCA +MN908947.3 25438 25461 SARS-CoV-2_84_RIGHT_1 2 - AGCATCCTTGATTTCACCTTGCT +MN908947.3 25331 25353 SARS-CoV-2_85_LEFT_1 1 + ATGAAGACGACTCTGAGCCAGT +MN908947.3 25711 25740 SARS-CoV-2_85_RIGHT_1 1 - CTGCAAGAAGTAGACTAAAGCATAAAGAT +MN908947.3 25645 25672 SARS-CoV-2_86_LEFT_1 2 + TGTTGTTTGTAACAGTTTACTCACACC +MN908947.3 26026 26050 SARS-CoV-2_86_RIGHT_1 2 - TCAATTGAGTTGAGTACAGCTGGT +MN908947.3 25951 25979 SARS-CoV-2_87_LEFT_1 1 + GTGGTTATACTGAAAAATGGGAATCTGG +MN908947.3 26338 26360 SARS-CoV-2_87_RIGHT_1 1 - AATCGAAGCGCAGTAAGGATGG +MN908947.3 26255 26277 SARS-CoV-2_88_LEFT_1 2 + CGTTTCGGAAGAGACAGGTACG +MN908947.3 26635 26661 SARS-CoV-2_88_RIGHT_1 2 - ACAAAAACCTATTCCTGTTGGCATAG +MN908947.3 26564 26587 SARS-CoV-2_89_LEFT_1 1 + AAGCTCCTTGAACAATGGAACCT +MN908947.3 26956 26979 SARS-CoV-2_89_RIGHT_1 1 - CAGCAATACGAAGATGTCCACGA +MN908947.3 26873 26895 SARS-CoV-2_90_LEFT_1 2 + ATTCTTCTCAACGTGCCACTCC +MN908947.3 27256 27283 SARS-CoV-2_90_RIGHT_1 2 - TCCAAATGGAAACTTTAAAAGTCCTCA +MN908947.3 27152 27177 SARS-CoV-2_91_LEFT_1 1 + TCCAGTAGCAGTGACAATATTGCTT +MN908947.3 27534 27560 SARS-CoV-2_91_RIGHT_1 1 - AGTGCAAATTTGTTATCAGCTAGAGG +MN908947.3 27447 27473 SARS-CoV-2_92_LEFT_1 2 + CACTACCAAGAGTGTGTTAGAGGTAC +MN908947.3 27826 27855 SARS-CoV-2_92_RIGHT_1 2 - GTTCAAGTGAGAACCAAAAGATAATAAGC +MN908947.3 27700 27726 SARS-CoV-2_93_LEFT_1 1 + TTGTTGCGGCAATAGTGTTTATAACA +MN908947.3 28082 28104 SARS-CoV-2_93_RIGHT_1 1 - TGGGTGATTTAGAACCAGCCTC +MN908947.3 27996 28021 SARS-CoV-2_94_LEFT_1 2 + ACCCGTGTCCTATTCACTTCTATTC +MN908947.3 28394 28416 SARS-CoV-2_94_RIGHT_1 2 - TTATTGGGTAAACCTTGGGGCC +MN908947.3 28190 28214 SARS-CoV-2_95_LEFT_1 1 + GTGCGTTGTTCGTTCTATGAAGAC +MN908947.3 28572 28598 SARS-CoV-2_95_RIGHT_1 1 - ACCATCTTGGACTGAGATCTTTCATT +MN908947.3 28512 28536 SARS-CoV-2_96_LEFT_1 2 + AGATGACCAAATTGGCTACTACCG +MN908947.3 28893 28914 SARS-CoV-2_96_RIGHT_1 2 - CCATTGCCAGCCATTCTAGCA +MN908947.3 28827 28849 SARS-CoV-2_97_LEFT_1 1 + TTCCTCATCACGTAGTCGCAAC +MN908947.3 29206 29227 SARS-CoV-2_97_RIGHT_1 1 - CGACATTCCGAAGAACGCTGA +MN908947.3 29136 29161 SARS-CoV-2_98_LEFT_1 2 + CCAGGAACTAATCAGACAAGGAACT +MN908947.3 29512 29534 SARS-CoV-2_98_RIGHT_1 2 - TTTAGGCCTGAGTTGAGTCAGC +MN908947.3 29452 29475 SARS-CoV-2_99_LEFT_1 1 + CTTCTTCCTGCTGCAGATTTGGA +MN908947.3 29827 29854 SARS-CoV-2_99_RIGHT_1 1 - GCTATTAAAATCACATGGGGATAGCAC diff --git a/schemes/sars-cov-2/artic/400/v4.0.0/primer.svg b/schemes/sars-cov-2/artic/400/v4.0.0/primer.svg new file mode 100644 index 0000000..2e50920 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v4.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/artic/v4.1/reference.fasta b/schemes/sars-cov-2/artic/400/v4.0.0/reference.fasta similarity index 100% rename from sars-cov-2/artic/v4.1/reference.fasta rename to schemes/sars-cov-2/artic/400/v4.0.0/reference.fasta diff --git a/schemes/sars-cov-2/artic/400/v4.0.0/scheme.bed b/schemes/sars-cov-2/artic/400/v4.0.0/scheme.bed new file mode 100644 index 0000000..b7c5808 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v4.0.0/scheme.bed @@ -0,0 +1,198 @@ +MN908947.3 25 50 SARS-CoV-2_1_LEFT_1 1 + +MN908947.3 408 431 SARS-CoV-2_1_RIGHT_1 1 - +MN908947.3 324 344 SARS-CoV-2_2_LEFT_1 2 + +MN908947.3 705 727 SARS-CoV-2_2_RIGHT_1 2 - +MN908947.3 644 666 SARS-CoV-2_3_LEFT_1 1 + +MN908947.3 1017 1044 SARS-CoV-2_3_RIGHT_1 1 - +MN908947.3 944 966 SARS-CoV-2_4_LEFT_1 2 + +MN908947.3 1337 1362 SARS-CoV-2_4_RIGHT_1 2 - +MN908947.3 1245 1266 SARS-CoV-2_5_LEFT_1 1 + +MN908947.3 1623 1650 SARS-CoV-2_5_RIGHT_1 1 - +MN908947.3 1540 1562 SARS-CoV-2_6_LEFT_1 2 + +MN908947.3 1925 1948 SARS-CoV-2_6_RIGHT_1 2 - +MN908947.3 1851 1875 SARS-CoV-2_7_LEFT_1 1 + +MN908947.3 2228 2250 SARS-CoV-2_7_RIGHT_1 1 - +MN908947.3 2154 2180 SARS-CoV-2_8_LEFT_1 2 + +MN908947.3 2544 2571 SARS-CoV-2_8_RIGHT_1 2 - +MN908947.3 2483 2508 SARS-CoV-2_9_LEFT_1 1 + +MN908947.3 2861 2885 SARS-CoV-2_9_RIGHT_1 1 - +MN908947.3 2826 2850 SARS-CoV-2_10_LEFT_1 2 + +MN908947.3 3183 3210 SARS-CoV-2_10_RIGHT_1 2 - +MN908947.3 3078 3102 SARS-CoV-2_11_LEFT_1 1 + +MN908947.3 3470 3492 SARS-CoV-2_11_RIGHT_1 1 - +MN908947.3 3390 3412 SARS-CoV-2_12_LEFT_1 2 + +MN908947.3 3769 3794 SARS-CoV-2_12_RIGHT_1 2 - +MN908947.3 3683 3705 SARS-CoV-2_13_LEFT_1 1 + +MN908947.3 4067 4093 SARS-CoV-2_13_RIGHT_1 1 - +MN908947.3 3992 4018 SARS-CoV-2_14_LEFT_1 2 + +MN908947.3 4387 4409 SARS-CoV-2_14_RIGHT_1 2 - +MN908947.3 4312 4339 SARS-CoV-2_15_LEFT_1 1 + +MN908947.3 4685 4710 SARS-CoV-2_15_RIGHT_1 1 - +MN908947.3 4620 4648 SARS-CoV-2_16_LEFT_1 2 + +MN908947.3 4995 5017 SARS-CoV-2_16_RIGHT_1 2 - +MN908947.3 4923 4953 SARS-CoV-2_17_LEFT_1 1 + +MN908947.3 5302 5331 SARS-CoV-2_17_RIGHT_1 1 - +MN908947.3 5230 5259 SARS-CoV-2_18_LEFT_1 2 + +MN908947.3 5620 5643 SARS-CoV-2_18_RIGHT_1 2 - +MN908947.3 5561 5584 SARS-CoV-2_19_LEFT_1 1 + +MN908947.3 5932 5957 SARS-CoV-2_19_RIGHT_1 1 - +MN908947.3 5867 5894 SARS-CoV-2_20_LEFT_1 2 + +MN908947.3 6247 6272 SARS-CoV-2_20_RIGHT_1 2 - +MN908947.3 6184 6210 SARS-CoV-2_21_LEFT_1 1 + +MN908947.3 6553 6582 SARS-CoV-2_21_RIGHT_1 1 - +MN908947.3 6478 6507 SARS-CoV-2_22_LEFT_1 2 + +MN908947.3 6859 6885 SARS-CoV-2_22_RIGHT_1 2 - +MN908947.3 6747 6776 SARS-CoV-2_23_LEFT_1 1 + +MN908947.3 7122 7148 SARS-CoV-2_23_RIGHT_1 1 - +MN908947.3 7057 7084 SARS-CoV-2_24_LEFT_1 2 + +MN908947.3 7440 7467 SARS-CoV-2_24_RIGHT_1 2 - +MN908947.3 7381 7403 SARS-CoV-2_25_LEFT_1 1 + +MN908947.3 7747 7770 SARS-CoV-2_25_RIGHT_1 1 - +MN908947.3 7672 7695 SARS-CoV-2_26_LEFT_1 2 + +MN908947.3 8063 8092 SARS-CoV-2_26_RIGHT_1 2 - +MN908947.3 7997 8019 SARS-CoV-2_27_LEFT_1 1 + +MN908947.3 8370 8395 SARS-CoV-2_27_RIGHT_1 1 - +MN908947.3 8304 8326 SARS-CoV-2_28_LEFT_1 2 + +MN908947.3 8691 8714 SARS-CoV-2_28_RIGHT_1 2 - +MN908947.3 8596 8619 SARS-CoV-2_29_LEFT_1 1 + +MN908947.3 8990 9013 SARS-CoV-2_29_RIGHT_1 1 - +MN908947.3 8919 8944 SARS-CoV-2_30_LEFT_1 2 + +MN908947.3 9306 9329 SARS-CoV-2_30_RIGHT_1 2 - +MN908947.3 9168 9192 SARS-CoV-2_31_LEFT_1 1 + +MN908947.3 9535 9564 SARS-CoV-2_31_RIGHT_1 1 - +MN908947.3 9470 9497 SARS-CoV-2_32_LEFT_1 2 + +MN908947.3 9842 9866 SARS-CoV-2_32_RIGHT_1 2 - +MN908947.3 9782 9805 SARS-CoV-2_33_LEFT_1 1 + +MN908947.3 10150 10176 SARS-CoV-2_33_RIGHT_1 1 - +MN908947.3 10076 10099 SARS-CoV-2_34_LEFT_1 2 + +MN908947.3 10465 10491 SARS-CoV-2_34_RIGHT_1 2 - +MN908947.3 10393 10419 SARS-CoV-2_35_LEFT_1 1 + +MN908947.3 10785 10810 SARS-CoV-2_35_RIGHT_1 1 - +MN908947.3 10713 10742 SARS-CoV-2_36_LEFT_1 2 + +MN908947.3 11092 11116 SARS-CoV-2_36_RIGHT_1 2 - +MN908947.3 11000 11023 SARS-CoV-2_37_LEFT_1 1 + +MN908947.3 11388 11414 SARS-CoV-2_37_RIGHT_1 1 - +MN908947.3 11305 11330 SARS-CoV-2_38_LEFT_1 2 + +MN908947.3 11689 11720 SARS-CoV-2_38_RIGHT_1 2 - +MN908947.3 11624 11651 SARS-CoV-2_39_LEFT_1 1 + +MN908947.3 12011 12033 SARS-CoV-2_39_RIGHT_1 1 - +MN908947.3 11937 11963 SARS-CoV-2_40_LEFT_1 2 + +MN908947.3 12317 12339 SARS-CoV-2_40_RIGHT_1 2 - +MN908947.3 12234 12255 SARS-CoV-2_41_LEFT_1 1 + +MN908947.3 12618 12643 SARS-CoV-2_41_RIGHT_1 1 - +MN908947.3 12519 12546 SARS-CoV-2_42_LEFT_1 2 + +MN908947.3 12895 12920 SARS-CoV-2_42_RIGHT_1 2 - +MN908947.3 12831 12856 SARS-CoV-2_43_LEFT_1 1 + +MN908947.3 13218 13240 SARS-CoV-2_43_RIGHT_1 1 - +MN908947.3 13124 13148 SARS-CoV-2_44_LEFT_1 2 + +MN908947.3 13506 13528 SARS-CoV-2_44_RIGHT_1 2 - +MN908947.3 13463 13485 SARS-CoV-2_45_LEFT_1 1 + +MN908947.3 13833 13859 SARS-CoV-2_45_RIGHT_1 1 - +MN908947.3 13752 13775 SARS-CoV-2_46_LEFT_1 2 + +MN908947.3 14120 14144 SARS-CoV-2_46_RIGHT_1 2 - +MN908947.3 14045 14075 SARS-CoV-2_47_LEFT_1 1 + +MN908947.3 14428 14457 SARS-CoV-2_47_RIGHT_1 1 - +MN908947.3 14338 14362 SARS-CoV-2_48_LEFT_1 2 + +MN908947.3 14717 14743 SARS-CoV-2_48_RIGHT_1 2 - +MN908947.3 14647 14674 SARS-CoV-2_49_LEFT_1 1 + +MN908947.3 15023 15050 SARS-CoV-2_49_RIGHT_1 1 - +MN908947.3 14953 14983 SARS-CoV-2_50_LEFT_1 2 + +MN908947.3 15336 15358 SARS-CoV-2_50_RIGHT_1 2 - +MN908947.3 15214 15237 SARS-CoV-2_51_LEFT_1 1 + +MN908947.3 15596 15619 SARS-CoV-2_51_RIGHT_1 1 - +MN908947.3 15535 15557 SARS-CoV-2_52_LEFT_1 2 + +MN908947.3 15917 15941 SARS-CoV-2_52_RIGHT_1 2 - +MN908947.3 15855 15881 SARS-CoV-2_53_LEFT_1 1 + +MN908947.3 16239 16260 SARS-CoV-2_53_RIGHT_1 1 - +MN908947.3 16112 16137 SARS-CoV-2_54_LEFT_1 2 + +MN908947.3 16483 16508 SARS-CoV-2_54_RIGHT_1 2 - +MN908947.3 16386 16408 SARS-CoV-2_55_LEFT_1 1 + +MN908947.3 16767 16796 SARS-CoV-2_55_RIGHT_1 1 - +MN908947.3 16692 16714 SARS-CoV-2_56_LEFT_1 2 + +MN908947.3 17082 17105 SARS-CoV-2_56_RIGHT_1 2 - +MN908947.3 16986 17013 SARS-CoV-2_57_LEFT_1 1 + +MN908947.3 17381 17405 SARS-CoV-2_57_RIGHT_1 1 - +MN908947.3 17323 17345 SARS-CoV-2_58_LEFT_1 2 + +MN908947.3 17688 17711 SARS-CoV-2_58_RIGHT_1 2 - +MN908947.3 17615 17642 SARS-CoV-2_59_LEFT_1 1 + +MN908947.3 17997 18022 SARS-CoV-2_59_RIGHT_1 1 - +MN908947.3 17911 17939 SARS-CoV-2_60_LEFT_1 2 + +MN908947.3 18307 18328 SARS-CoV-2_60_RIGHT_1 2 - +MN908947.3 18244 18267 SARS-CoV-2_61_LEFT_1 1 + +MN908947.3 18624 18652 SARS-CoV-2_61_RIGHT_1 1 - +MN908947.3 18550 18578 SARS-CoV-2_62_LEFT_1 2 + +MN908947.3 18936 18961 SARS-CoV-2_62_RIGHT_1 2 - +MN908947.3 18869 18891 SARS-CoV-2_63_LEFT_1 1 + +MN908947.3 19252 19277 SARS-CoV-2_63_RIGHT_1 1 - +MN908947.3 19183 19208 SARS-CoV-2_64_LEFT_1 2 + +MN908947.3 19558 19586 SARS-CoV-2_64_RIGHT_1 2 - +MN908947.3 19485 19513 SARS-CoV-2_65_LEFT_1 1 + +MN908947.3 19877 19901 SARS-CoV-2_65_RIGHT_1 1 - +MN908947.3 19810 19836 SARS-CoV-2_66_LEFT_1 2 + +MN908947.3 20186 20216 SARS-CoV-2_66_RIGHT_1 2 - +MN908947.3 20090 20117 SARS-CoV-2_67_LEFT_1 1 + +MN908947.3 20472 20497 SARS-CoV-2_67_RIGHT_1 1 - +MN908947.3 20377 20405 SARS-CoV-2_68_LEFT_1 2 + +MN908947.3 20766 20792 SARS-CoV-2_68_RIGHT_1 2 - +MN908947.3 20677 20699 SARS-CoV-2_69_LEFT_1 1 + +MN908947.3 21050 21080 SARS-CoV-2_69_RIGHT_1 1 - +MN908947.3 20988 21013 SARS-CoV-2_70_LEFT_1 2 + +MN908947.3 21358 21387 SARS-CoV-2_70_RIGHT_1 2 - +MN908947.3 21294 21316 SARS-CoV-2_71_LEFT_1 1 + +MN908947.3 21675 21700 SARS-CoV-2_71_RIGHT_1 1 - +MN908947.3 21532 21561 SARS-CoV-2_72_LEFT_1 2 + +MN908947.3 21904 21933 SARS-CoV-2_72_RIGHT_1 2 - +MN908947.3 21865 21889 SARS-CoV-2_73_LEFT_1 1 + +MN908947.3 22247 22274 SARS-CoV-2_73_RIGHT_1 1 - +MN908947.3 22091 22113 SARS-CoV-2_74_LEFT_1 2 + +MN908947.3 22474 22503 SARS-CoV-2_74_RIGHT_1 2 - +MN908947.3 22402 22428 SARS-CoV-2_75_LEFT_1 1 + +MN908947.3 22785 22805 SARS-CoV-2_75_RIGHT_1 1 - +MN908947.3 22648 22677 SARS-CoV-2_76_LEFT_1 2 + +MN908947.3 23028 23057 SARS-CoV-2_76_RIGHT_1 2 - +MN908947.3 22944 22974 SARS-CoV-2_77_LEFT_1 1 + +MN908947.3 23327 23351 SARS-CoV-2_77_RIGHT_1 1 - +MN908947.3 23219 23246 SARS-CoV-2_78_LEFT_1 2 + +MN908947.3 23611 23635 SARS-CoV-2_78_RIGHT_1 2 - +MN908947.3 23553 23575 SARS-CoV-2_79_LEFT_1 1 + +MN908947.3 23927 23955 SARS-CoV-2_79_RIGHT_1 1 - +MN908947.3 23853 23876 SARS-CoV-2_80_LEFT_1 2 + +MN908947.3 24233 24258 SARS-CoV-2_80_RIGHT_1 2 - +MN908947.3 24171 24194 SARS-CoV-2_81_LEFT_1 1 + +MN908947.3 24545 24567 SARS-CoV-2_81_RIGHT_1 1 - +MN908947.3 24426 24448 SARS-CoV-2_82_LEFT_1 2 + +MN908947.3 24814 24836 SARS-CoV-2_82_RIGHT_1 2 - +MN908947.3 24750 24772 SARS-CoV-2_83_LEFT_1 1 + +MN908947.3 25122 25150 SARS-CoV-2_83_RIGHT_1 1 - +MN908947.3 25051 25076 SARS-CoV-2_84_LEFT_1 2 + +MN908947.3 25438 25461 SARS-CoV-2_84_RIGHT_1 2 - +MN908947.3 25331 25353 SARS-CoV-2_85_LEFT_1 1 + +MN908947.3 25711 25740 SARS-CoV-2_85_RIGHT_1 1 - +MN908947.3 25645 25672 SARS-CoV-2_86_LEFT_1 2 + +MN908947.3 26026 26050 SARS-CoV-2_86_RIGHT_1 2 - +MN908947.3 25951 25979 SARS-CoV-2_87_LEFT_1 1 + +MN908947.3 26338 26360 SARS-CoV-2_87_RIGHT_1 1 - +MN908947.3 26255 26277 SARS-CoV-2_88_LEFT_1 2 + +MN908947.3 26635 26661 SARS-CoV-2_88_RIGHT_1 2 - +MN908947.3 26564 26587 SARS-CoV-2_89_LEFT_1 1 + +MN908947.3 26956 26979 SARS-CoV-2_89_RIGHT_1 1 - +MN908947.3 26873 26895 SARS-CoV-2_90_LEFT_1 2 + +MN908947.3 27256 27283 SARS-CoV-2_90_RIGHT_1 2 - +MN908947.3 27152 27177 SARS-CoV-2_91_LEFT_1 1 + +MN908947.3 27534 27560 SARS-CoV-2_91_RIGHT_1 1 - +MN908947.3 27447 27473 SARS-CoV-2_92_LEFT_1 2 + +MN908947.3 27826 27855 SARS-CoV-2_92_RIGHT_1 2 - +MN908947.3 27700 27726 SARS-CoV-2_93_LEFT_1 1 + +MN908947.3 28082 28104 SARS-CoV-2_93_RIGHT_1 1 - +MN908947.3 27996 28021 SARS-CoV-2_94_LEFT_1 2 + +MN908947.3 28394 28416 SARS-CoV-2_94_RIGHT_1 2 - +MN908947.3 28190 28214 SARS-CoV-2_95_LEFT_1 1 + +MN908947.3 28572 28598 SARS-CoV-2_95_RIGHT_1 1 - +MN908947.3 28512 28536 SARS-CoV-2_96_LEFT_1 2 + +MN908947.3 28893 28914 SARS-CoV-2_96_RIGHT_1 2 - +MN908947.3 28827 28849 SARS-CoV-2_97_LEFT_1 1 + +MN908947.3 29206 29227 SARS-CoV-2_97_RIGHT_1 1 - +MN908947.3 29136 29161 SARS-CoV-2_98_LEFT_1 2 + +MN908947.3 29512 29534 SARS-CoV-2_98_RIGHT_1 2 - +MN908947.3 29452 29475 SARS-CoV-2_99_LEFT_1 1 + +MN908947.3 29827 29854 SARS-CoV-2_99_RIGHT_1 1 - diff --git a/schemes/sars-cov-2/artic/400/v4.1.0/info.yml b/schemes/sars-cov-2/artic/400/v4.1.0/info.yml new file mode 100644 index 0000000..f7b23f4 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v4.1.0/info.yml @@ -0,0 +1,22 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: artic +amplicon_size: 400 +version: v4.1.0 +derived_from: sars-cov-2/artic/400/v4.0.0 +aliases: +- ARTIC/V4.1 +developers: +- ARTIC network +vendors: +- organisation_name: IDT + kit_name: '10011442' +- organisation_name: Eurofins + home_page: https://eurofinsgenomics.com +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v4.1 +source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v4.1.0 +citations: +- https://doi.org/10.1101%2F2020.09.04.283077 +license: CC-BY-SA-4.0 +primer_checksum: primaschema:3ef3e7bb23008684 +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/artic/400/v4.1.0/primer.bed b/schemes/sars-cov-2/artic/400/v4.1.0/primer.bed new file mode 100644 index 0000000..24f0442 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v4.1.0/primer.bed @@ -0,0 +1,209 @@ +MN908947.3 25 50 SARS-CoV-2_1_LEFT_1 1 + AACAAACCAACCAACTTTCGATCTC +MN908947.3 408 431 SARS-CoV-2_1_RIGHT_1 1 - CTTCTACTAAGCCACAAGTGCCA +MN908947.3 324 344 SARS-CoV-2_2_LEFT_1 2 + TTTACAGGTTCGCGACGTGC +MN908947.3 705 727 SARS-CoV-2_2_RIGHT_1 2 - ATAAGGATCAGTGCCAAGCTCG +MN908947.3 644 666 SARS-CoV-2_3_LEFT_1 1 + GTAATAAAGGAGCTGGTGGCCA +MN908947.3 1017 1044 SARS-CoV-2_3_RIGHT_1 1 - GCCAATTTAATTTCAAAAGGTGTCTGC +MN908947.3 944 966 SARS-CoV-2_4_LEFT_1 2 + GTGTATACTGCTGCCGTGAACA +MN908947.3 1337 1362 SARS-CoV-2_4_RIGHT_1 2 - ACAACAGCATTTTGGGGTAAGTAAC +MN908947.3 1245 1266 SARS-CoV-2_5_LEFT_1 1 + TGAAACTTCATGGCAGACGGG +MN908947.3 1623 1650 SARS-CoV-2_5_RIGHT_1 1 - TTGATGTTGACTTTCTCTTTTTGGAGT +MN908947.3 1540 1562 SARS-CoV-2_6_LEFT_1 2 + CGTGCTAGCGCTAACATAGGTT +MN908947.3 1925 1948 SARS-CoV-2_6_RIGHT_1 2 - AACACGCACAGAATTTTGAGCAG +MN908947.3 1851 1875 SARS-CoV-2_7_LEFT_1 1 + ACTGAGTCCTCTTTATGCATTTGC +MN908947.3 2228 2250 SARS-CoV-2_7_RIGHT_1 1 - CCACCGACAATTTCACAAGCAC +MN908947.3 2154 2180 SARS-CoV-2_8_LEFT_1 2 + GCTTGAAGAGAAGTTTAAGGAAGGTG +MN908947.3 2544 2571 SARS-CoV-2_8_RIGHT_1 2 - GGTTGTTCTAATGGTTGTAAATCACCA +MN908947.3 2483 2508 SARS-CoV-2_9_LEFT_1 1 + TCTTCTTAGAGGGAGAAACACTTCC +MN908947.3 2861 2885 SARS-CoV-2_9_RIGHT_1 1 - CACAGGCGAACTCATTTACTTCTG +MN908947.3 2780 2813 SARS-CoV-2_10_LEFT_1 2 + TGAATATCACTTTTGAACTTGATGAAAGGATTG +MN908947.3 2826 2850 SARS-CoV-2_10_LEFT_2 2 + TGAGAAGTGCTCTGCCTATACAGT +MN908947.3 3156 3177 SARS-CoV-2_10_RIGHT_1 2 - GGTTGAAGAGCAGCAGAAGTG +MN908947.3 3183 3210 SARS-CoV-2_10_RIGHT_2 2 - TCATCTAACCAATCTTCTTCTTGCTCT +MN908947.3 3078 3102 SARS-CoV-2_11_LEFT_1 1 + AGAAGAGTTTGAGCCATCAACTCA +MN908947.3 3470 3492 SARS-CoV-2_11_RIGHT_1 1 - TTTAAGGCTCCTGCAACACCTC +MN908947.3 3390 3412 SARS-CoV-2_12_LEFT_1 2 + TGCAGACATTGTGGAAGAAGCT +MN908947.3 3769 3794 SARS-CoV-2_12_RIGHT_1 2 - CAGCTAAGTAGACATTTGTGCGAAC +MN908947.3 3683 3705 SARS-CoV-2_13_LEFT_1 1 + AGCACGAAGTTCTACTTGCACC +MN908947.3 4067 4093 SARS-CoV-2_13_RIGHT_1 1 - GATGTCAATGTCACTAACAAGAGTGG +MN908947.3 3992 4018 SARS-CoV-2_14_LEFT_1 2 + TGGAAGAAACTAAGTTCCTCACAGAA +MN908947.3 4387 4409 SARS-CoV-2_14_RIGHT_1 2 - CATGTGCAAGCATTTCTCGCAA +MN908947.3 4312 4339 SARS-CoV-2_15_LEFT_1 1 + AAAAGTGCCTTTTACATTCTACCATCT +MN908947.3 4685 4710 SARS-CoV-2_15_RIGHT_1 1 - GCATCAGGTGAAGAAACAGAAACTG +MN908947.3 4620 4648 SARS-CoV-2_16_LEFT_1 2 + TGTAACACATGGCTTAAATTTGGAAGAA +MN908947.3 4995 5017 SARS-CoV-2_16_RIGHT_1 2 - CACAACTTGCGTGTGGAGGTTA +MN908947.3 4923 4953 SARS-CoV-2_17_LEFT_1 1 + TGACAATCTTAAGACACTTCTTTCTTTGAG +MN908947.3 5302 5331 SARS-CoV-2_17_RIGHT_1 1 - TTCAACTCTATTTGTTGGAGTGTTAACAA +MN908947.3 5230 5259 SARS-CoV-2_18_LEFT_1 2 + TGGAAATACCCACAAGTTAATGGTTTAAC +MN908947.3 5620 5643 SARS-CoV-2_18_RIGHT_1 2 - GCTTGTTTACCACACGTACAAGG +MN908947.3 5561 5584 SARS-CoV-2_19_LEFT_1 1 + AAGCTGTTATGTACATGGGCACA +MN908947.3 5932 5957 SARS-CoV-2_19_RIGHT_1 1 - TGTCCAACTTAGGGTCAATTTCTGT +MN908947.3 5867 5894 SARS-CoV-2_20_LEFT_1 2 + ACAAAGAAAACAGTTACACAACAACCA +MN908947.3 6247 6272 SARS-CoV-2_20_RIGHT_1 2 - ACGTGGCTTTATTAGTTGCATTGTT +MN908947.3 6184 6210 SARS-CoV-2_21_LEFT_1 1 + CACTACACACCCTCTTTTAAGAAAGG +MN908947.3 6553 6582 SARS-CoV-2_21_RIGHT_1 1 - GTAAGACTAGAATTGTCTACATAAGCAGC +MN908947.3 6478 6507 SARS-CoV-2_22_LEFT_1 2 + GTAGGAGACATTATACTTAAACCAGCAAA +MN908947.3 6859 6885 SARS-CoV-2_22_RIGHT_1 2 - CCGACACTCTTAACAGTATTCTTTGC +MN908947.3 6747 6776 SARS-CoV-2_23_LEFT_1 1 + AAACCGTGTTTGTACTAATTATATGCCTT +MN908947.3 7122 7148 SARS-CoV-2_23_RIGHT_1 1 - AACCACTAAGACAAACACTACAAGGT +MN908947.3 7127 7156 SARS-CoV-2_23_RIGHT_2 1 - AGAATCTAAACCACTAAGACAAACACTAC +MN908947.3 7057 7084 SARS-CoV-2_24_LEFT_1 2 + GGTTACAGAGAAGGCTATTTGAACTCT +MN908947.3 7440 7467 SARS-CoV-2_24_RIGHT_1 2 - ACAACATGCACATAACTTTTCCATACA +MN908947.3 7381 7403 SARS-CoV-2_25_LEFT_1 1 + CAAATGGCCCCGATTTCAGCTA +MN908947.3 7747 7770 SARS-CoV-2_25_RIGHT_1 1 - TGGATGGAACCATTCTTCACTGT +MN908947.3 7672 7695 SARS-CoV-2_26_LEFT_1 2 + GCGAGAGACTTGTCACTACAGTT +MN908947.3 8063 8092 SARS-CoV-2_26_RIGHT_1 2 - GAGTTTTTCCATTGGTACGTTAAAAGTTG +MN908947.3 7997 8019 SARS-CoV-2_27_LEFT_1 1 + CTGATGTTGGTGATAGTGCGGA +MN908947.3 8367 8392 SARS-CoV-2_27_RIGHT_1 1 - AATGTTGTGACTTTTTGCTACCTGC +MN908947.3 8370 8395 SARS-CoV-2_27_RIGHT_2 1 - AGCAATGTTGTGACTTTTTGCTACC +MN908947.3 8304 8326 SARS-CoV-2_28_LEFT_1 2 + TGAAAACATGACACCCCGTGAC +MN908947.3 8691 8714 SARS-CoV-2_28_RIGHT_1 2 - TGACACCACCATCAATAGCCTTG +MN908947.3 8596 8619 SARS-CoV-2_29_LEFT_1 1 + CTTGTGTTCCTTTTTGTTGCTGC +MN908947.3 8990 9013 SARS-CoV-2_29_RIGHT_1 1 - AGCCAAAACACAAGCTGATGTTG +MN908947.3 8919 8944 SARS-CoV-2_30_LEFT_1 2 + ACCTAGAGTTTTTAGTGCAGTTGGT +MN908947.3 9306 9329 SARS-CoV-2_30_RIGHT_1 2 - CTACACCACAGAAAACTCCTGGT +MN908947.3 9168 9192 SARS-CoV-2_31_LEFT_1 1 + CCTTGAAGGTTCTGTTAGAGTGGT +MN908947.3 9535 9564 SARS-CoV-2_31_RIGHT_1 1 - AATGAGTAAACTGGTGTTAAACAGAGTAC +MN908947.3 9470 9497 SARS-CoV-2_32_LEFT_1 2 + GAGCTTTTGGTGAATACAGTCATGTAG +MN908947.3 9842 9866 SARS-CoV-2_32_RIGHT_1 2 - GAGGTAATAGCACATCACTACGCA +MN908947.3 9782 9805 SARS-CoV-2_33_LEFT_1 1 + GTACTTTTGAAGAAGCTGCGCTG +MN908947.3 10150 10176 SARS-CoV-2_33_RIGHT_1 1 - TGTCTTGGACAGTAAACTACGTCATC +MN908947.3 10076 10099 SARS-CoV-2_34_LEFT_1 2 + TCCCATCTGGTAAAGTTGAGGGT +MN908947.3 10465 10491 SARS-CoV-2_34_RIGHT_1 2 - CCACATGAACCATTAAGGAATGAACC +MN908947.3 10393 10419 SARS-CoV-2_35_LEFT_1 1 + GTGTTAGCTTGTTACAATGGTTCACC +MN908947.3 10785 10810 SARS-CoV-2_35_RIGHT_1 1 - AGGTCCTAGTATGTCAACATGGTCT +MN908947.3 10713 10742 SARS-CoV-2_36_LEFT_1 2 + CAATCGATTTACCACAACTCTTAATGACT +MN908947.3 11092 11116 SARS-CoV-2_36_RIGHT_1 2 - ACCCATAGCAAAAGGTAAAAAGGC +MN908947.3 11000 11023 SARS-CoV-2_37_LEFT_1 1 + CACACCACTGGTTGTTACTCACA +MN908947.3 11388 11414 SARS-CoV-2_37_RIGHT_1 1 - GTGTCAAGACATTCATAAGTGTCCAC +MN908947.3 11305 11330 SARS-CoV-2_38_LEFT_1 2 + GACTGTGTTATGTATGCATCAGCTG +MN908947.3 11689 11720 SARS-CoV-2_38_RIGHT_1 2 - CCTGTGTAGAAACTAAGTAATCATAAACACC +MN908947.3 11624 11651 SARS-CoV-2_39_LEFT_1 1 + GCTATTTTTGTACTTGTTACTTTGGCC +MN908947.3 12011 12033 SARS-CoV-2_39_RIGHT_1 1 - CCCTGCATGGAAAGCAAAACAG +MN908947.3 11937 11963 SARS-CoV-2_40_LEFT_1 2 + TGTCCAGTTACACAATGACATTCTCT +MN908947.3 12317 12339 SARS-CoV-2_40_RIGHT_1 2 - ACTTTTGCCCTCTTGTCCTCAG +MN908947.3 12234 12255 SARS-CoV-2_41_LEFT_1 1 + ATTTGACCGTGATGCAGCCAT +MN908947.3 12618 12643 SARS-CoV-2_41_RIGHT_1 1 - AAGAGGCCATGCTAAATTAGGTGAA +MN908947.3 12519 12546 SARS-CoV-2_42_LEFT_1 2 + TGGTACAACATTTACTTATGCATCAGC +MN908947.3 12895 12920 SARS-CoV-2_42_RIGHT_1 2 - TGTCTGTAACAAACCTACAAGGTGG +MN908947.3 12831 12856 SARS-CoV-2_43_LEFT_1 1 + GGATTTGAAATGGGCTAGATTCCCT +MN908947.3 13218 13240 SARS-CoV-2_43_RIGHT_1 1 - CGATGCACCACCAAAGGATTCT +MN908947.3 13124 13148 SARS-CoV-2_44_LEFT_1 2 + GGGGACAACCAATCACTAATTGTG +MN908947.3 13506 13528 SARS-CoV-2_44_RIGHT_1 2 - CATCAGTACTAGTGCCTGTGCC +MN908947.3 13463 13485 SARS-CoV-2_45_LEFT_1 1 + TAAACGGGTTTGCGGTGTAAGT +MN908947.3 13833 13859 SARS-CoV-2_45_RIGHT_1 1 - TCACAATTACCTTCATCAAAATGCCT +MN908947.3 13752 13775 SARS-CoV-2_46_LEFT_1 2 + AGAATAGACGGTGACATGGTACC +MN908947.3 14120 14144 SARS-CoV-2_46_RIGHT_1 2 - TCTACAACAGGAACTCCACTACCT +MN908947.3 14045 14075 SARS-CoV-2_47_LEFT_1 1 + TGGTGTACTGACATTAGATAATCAAGATCT +MN908947.3 14428 14457 SARS-CoV-2_47_RIGHT_1 1 - TGGAACACCATCAACAAATATTTTTCTCA +MN908947.3 14338 14362 SARS-CoV-2_48_LEFT_1 2 + ACTGTTTGGATGACAGATGCATTC +MN908947.3 14717 14743 SARS-CoV-2_48_RIGHT_1 2 - CAGAACTTCCTTCCTTAAAGAAACCC +MN908947.3 14647 14674 SARS-CoV-2_49_LEFT_1 1 + ACAATGTTGCTTTTCAAACTGTCAAAC +MN908947.3 15023 15050 SARS-CoV-2_49_RIGHT_1 1 - GGGATGACATTACGTTTTGTATATGCG +MN908947.3 14953 14983 SARS-CoV-2_50_LEFT_1 2 + CATTTAATAAATGGGGTAAGGCTAGACTTT +MN908947.3 15336 15358 SARS-CoV-2_50_RIGHT_1 2 - GAGCAAGAACAAGTGAGGCCAT +MN908947.3 15214 15237 SARS-CoV-2_51_LEFT_1 1 + GCAAATTCTATGGTGGTTGGCAC +MN908947.3 15596 15619 SARS-CoV-2_51_RIGHT_1 1 - GTCTGTGTTGTAAATTGCGGACA +MN908947.3 15535 15557 SARS-CoV-2_52_LEFT_1 2 + CTGTCACGGCCAATGTTAATGC +MN908947.3 15917 15941 SARS-CoV-2_52_RIGHT_1 2 - GGATCTGGGTAAGGAAGGTACACA +MN908947.3 15855 15881 SARS-CoV-2_53_LEFT_1 1 + ACTAAAGGACCTCATGAATTTTGCTC +MN908947.3 16239 16260 SARS-CoV-2_53_RIGHT_1 1 - GCAAAGAACACAAGCCCCAAC +MN908947.3 16112 16137 SARS-CoV-2_54_LEFT_1 2 + ACATGATGAGTTAACAGGACACATG +MN908947.3 16483 16508 SARS-CoV-2_54_RIGHT_1 2 - CCAAAAACTTGTCCATTAGCACACA +MN908947.3 16386 16408 SARS-CoV-2_55_LEFT_1 1 + AATGCTCCAGGTTGTGATGTCA +MN908947.3 16767 16796 SARS-CoV-2_55_RIGHT_1 1 - ACACGATAACCAGTAAAGACATAATTTCG +MN908947.3 16692 16714 SARS-CoV-2_56_LEFT_1 2 + ACTGTACGTGAAGTGCTGTCTG +MN908947.3 17082 17105 SARS-CoV-2_56_RIGHT_1 2 - TGACTCTTACCAGTACCAGGTGG +MN908947.3 16986 17013 SARS-CoV-2_57_LEFT_1 1 + GGCTTATACCCAACACTCAATATCTCA +MN908947.3 17381 17405 SARS-CoV-2_57_RIGHT_1 1 - CTGGCATTGACAACACTCAAATCA +MN908947.3 17323 17345 SARS-CoV-2_58_LEFT_1 2 + TGCCTGAGACGACAGCAGATAT +MN908947.3 17688 17711 SARS-CoV-2_58_RIGHT_1 2 - TGTGGCCTGTTAATTGCAGATGA +MN908947.3 17615 17642 SARS-CoV-2_59_LEFT_1 1 + GCTTAAAGCACATAAAGACAAATCAGC +MN908947.3 17997 18022 SARS-CoV-2_59_RIGHT_1 1 - TCCTACGTGGAATTTCAAGACTTGT +MN908947.3 17911 17939 SARS-CoV-2_60_LEFT_1 2 + ACAGATTTAATGTTGCTATTACCAGAGC +MN908947.3 18307 18328 SARS-CoV-2_60_RIGHT_1 2 - TAGCATGACACCCCTCGACAT +MN908947.3 18244 18267 SARS-CoV-2_61_LEFT_1 1 + ACCCTAACATGTTTATCACCCGC +MN908947.3 18624 18652 SARS-CoV-2_61_RIGHT_1 1 - GCTCAGGTCCTATTTTCACAAAATACTT +MN908947.3 18550 18578 SARS-CoV-2_62_LEFT_1 2 + GTGACACACTTAAAAATCTCTCTGACAG +MN908947.3 18936 18961 SARS-CoV-2_62_RIGHT_1 2 - CCGCATTAATCTTCAGTTCATCACC +MN908947.3 18869 18891 SARS-CoV-2_63_LEFT_1 1 + TAGGTGTCTAGCTGTCCACGAG +MN908947.3 19252 19277 SARS-CoV-2_63_RIGHT_1 1 - CCAGGCAAGTTAAGGTTAGATAGCA +MN908947.3 19183 19208 SARS-CoV-2_64_LEFT_1 2 + GCCTATTTTGGAATTGCAATGTCGA +MN908947.3 19558 19586 SARS-CoV-2_64_RIGHT_1 2 - GTATCAAATTGTTTGTAAACCCACAAGC +MN908947.3 19485 19513 SARS-CoV-2_65_LEFT_1 1 + GTCTGTAGACATCATGCTAATGAGTACA +MN908947.3 19877 19901 SARS-CoV-2_65_RIGHT_1 1 - GCTGGAGCATCTCTTTTGTAGTCC +MN908947.3 19810 19836 SARS-CoV-2_66_LEFT_1 2 + AACCAGTACCAGAGGTGAAAATACTC +MN908947.3 20186 20216 SARS-CoV-2_66_RIGHT_1 2 - TTTCTACTCTGAGTAAAGTAAGTTTCAGGT +MN908947.3 20090 20117 SARS-CoV-2_67_LEFT_1 1 + CAAACAAGCTAGTCTTAATGGAGTCAC +MN908947.3 20472 20497 SARS-CoV-2_67_RIGHT_1 1 - AACACACACACTTAGATGAACCTGT +MN908947.3 20377 20405 SARS-CoV-2_68_LEFT_1 2 + GACTAGCTAAACGTTTTAAGGAATCACC +MN908947.3 20766 20792 SARS-CoV-2_68_RIGHT_1 2 - GCGACATTCATCATTATGCCTTTAGG +MN908947.3 20677 20699 SARS-CoV-2_69_LEFT_1 1 + CGGGTGTTGCTATGCCTAATCT +MN908947.3 21050 21080 SARS-CoV-2_69_RIGHT_1 1 - TTTGTAACATTTTTAGTCTTAGGGTCGTAC +MN908947.3 20988 21013 SARS-CoV-2_70_LEFT_1 2 + TTGATTGGTGATTGTGCAACTGTAC +MN908947.3 21358 21387 SARS-CoV-2_70_RIGHT_1 2 - AGAATAGGAAGACAACTGAATTGGATTTG +MN908947.3 21294 21316 SARS-CoV-2_71_LEFT_1 1 + GGCAAACCACGCGAACAAATAG +MN908947.3 21675 21700 SARS-CoV-2_71_RIGHT_1 1 - TGAGGATCTGAAAACTTTGTCAGGG +MN908947.3 21532 21561 SARS-CoV-2_72_LEFT_1 2 + GTGATGTTCTTGTTAACAACTAAACGAAC +MN908947.3 21904 21933 SARS-CoV-2_72_RIGHT_1 2 - GTAGCGTTATTAACAATAAGTAGGGACTG +MN908947.3 21865 21889 SARS-CoV-2_73_LEFT_1 1 + AGAGGCTGGATTTTTGGTACTACT +MN908947.3 22247 22274 SARS-CoV-2_73_RIGHT_1 1 - ACCTAGTGATGTTAATACCTATTGGCA +MN908947.3 22091 22113 SARS-CoV-2_74_LEFT_1 2 + TGGACCTTGAAGGAAAACAGGG +MN908947.3 22474 22503 SARS-CoV-2_74_RIGHT_1 2 - TGATAGATTCCTTTTTCTACAGTGAAGGA +MN908947.3 22402 22428 SARS-CoV-2_75_LEFT_1 1 + GAAAATGGAACCATTACAGATGCTGT +MN908947.3 22785 22805 SARS-CoV-2_75_RIGHT_1 1 - TTTGCCCTGGAGCGATTTGT +MN908947.3 22648 22677 SARS-CoV-2_76_LEFT_2 2 + GCTGATTATTCTGTCCTATATAATTCCGC +MN908947.3 22742 22774 SARS-CoV-2_76_LEFT_1 2 + ATGTCTATGCAGATTCATTTGTAATTAGAGGT +MN908947.3 23028 23057 SARS-CoV-2_76_RIGHT_2 2 - GTTGGAAACCATATGATTGTAAAGGAAAG +MN908947.3 23120 23141 SARS-CoV-2_76_RIGHT_1 2 - GTCCACAAACAGTTGCTGGTG +MN908947.3 22944 22974 SARS-CoV-2_77_LEFT_1 1 + CAAACCTTTTGAGAGAGATATTTCAACTGA +MN908947.3 23327 23351 SARS-CoV-2_77_RIGHT_1 1 - CACTGACACCACCAAAAGAACATG +MN908947.3 23219 23246 SARS-CoV-2_78_LEFT_1 2 + CTGAGTCTAACAAAAAGTTTCTGCCTT +MN908947.3 23611 23635 SARS-CoV-2_78_RIGHT_1 2 - GGATTGACTAGCTACACTACGTGC +MN908947.3 23553 23575 SARS-CoV-2_79_LEFT_1 1 + ACCCATTGGTGCAGGTATATGC +MN908947.3 23914 23944 SARS-CoV-2_79_RIGHT_1 1 - AATTGGTGGTGTTTTGTAAATTTGTTTGAC +MN908947.3 23927 23955 SARS-CoV-2_79_RIGHT_2 1 - CCAAAATCTTTAATTGGTGGTGTTTTGT +MN908947.3 23853 23876 SARS-CoV-2_80_LEFT_1 2 + CCGTGCTTTAACTGGAATAGCTG +MN908947.3 24233 24258 SARS-CoV-2_80_RIGHT_1 2 - GCAAATGGTATTTGTAATGCAGCAC +MN908947.3 24171 24194 SARS-CoV-2_81_LEFT_1 1 + TGCTCAATACACTTCTGCACTGT +MN908947.3 24545 24567 SARS-CoV-2_81_RIGHT_1 1 - TGAAGTCTGCCTGTGATCAACC +MN908947.3 24426 24448 SARS-CoV-2_82_LEFT_1 2 + TGCACAAGCTTTAAACACGCTT +MN908947.3 24814 24836 SARS-CoV-2_82_RIGHT_1 2 - CACGAGGAAAGTGTGCTTTTCC +MN908947.3 24750 24772 SARS-CoV-2_83_LEFT_1 1 + GCATGTGACTTATGTCCCTGCA +MN908947.3 25122 25150 SARS-CoV-2_83_RIGHT_1 1 - AGATTCATTTAAATTCTTGGCAACCTCA +MN908947.3 25051 25076 SARS-CoV-2_84_LEFT_1 2 + GTTGATTTAGGTGACATCTCTGGCA +MN908947.3 25438 25461 SARS-CoV-2_84_RIGHT_1 2 - AGCATCCTTGATTTCACCTTGCT +MN908947.3 25331 25353 SARS-CoV-2_85_LEFT_1 1 + ATGAAGACGACTCTGAGCCAGT +MN908947.3 25711 25740 SARS-CoV-2_85_RIGHT_1 1 - CTGCAAGAAGTAGACTAAAGCATAAAGAT +MN908947.3 25645 25672 SARS-CoV-2_86_LEFT_1 2 + TGTTGTTTGTAACAGTTTACTCACACC +MN908947.3 26026 26050 SARS-CoV-2_86_RIGHT_1 2 - TCAATTGAGTTGAGTACAGCTGGT +MN908947.3 25951 25979 SARS-CoV-2_87_LEFT_1 1 + GTGGTTATACTGAAAAATGGGAATCTGG +MN908947.3 26338 26360 SARS-CoV-2_87_RIGHT_1 1 - AATCGAAGCGCAGTAAGGATGG +MN908947.3 26242 26268 SARS-CoV-2_88_LEFT_2 2 + TTATGTACTCATTCGTTTCGGAAGAG +MN908947.3 26255 26277 SARS-CoV-2_88_LEFT_1 2 + CGTTTCGGAAGAGACAGGTACG +MN908947.3 26635 26661 SARS-CoV-2_88_RIGHT_1 2 - ACAAAAACCTATTCCTGTTGGCATAG +MN908947.3 26564 26587 SARS-CoV-2_89_LEFT_1 1 + AAGCTCCTTGAACAATGGAACCT +MN908947.3 26592 26621 SARS-CoV-2_89_LEFT_2 1 + TAGGTTTCCTATTCCTTACATGGATTTGT +MN908947.3 26956 26979 SARS-CoV-2_89_RIGHT_1 1 - CAGCAATACGAAGATGTCCACGA +MN908947.3 26966 26991 SARS-CoV-2_89_RIGHT_2 1 - CTAGATGGTGTCCAGCAATACGAAG +MN908947.3 26873 26895 SARS-CoV-2_90_LEFT_1 2 + ATTCTTCTCAACGTGCCACTCC +MN908947.3 27218 27251 SARS-CoV-2_90_RIGHT_1 2 - ATTAGTAATATCTCTGCTATAGTAACCTGAAAG +MN908947.3 27256 27283 SARS-CoV-2_90_RIGHT_2 2 - TCCAAATGGAAACTTTAAAAGTCCTCA +MN908947.3 27152 27177 SARS-CoV-2_91_LEFT_1 1 + TCCAGTAGCAGTGACAATATTGCTT +MN908947.3 27534 27560 SARS-CoV-2_91_RIGHT_1 1 - AGTGCAAATTTGTTATCAGCTAGAGG +MN908947.3 27447 27473 SARS-CoV-2_92_LEFT_1 2 + CACTACCAAGAGTGTGTTAGAGGTAC +MN908947.3 27826 27855 SARS-CoV-2_92_RIGHT_1 2 - GTTCAAGTGAGAACCAAAAGATAATAAGC +MN908947.3 27700 27726 SARS-CoV-2_93_LEFT_1 1 + TTGTTGCGGCAATAGTGTTTATAACA +MN908947.3 28082 28104 SARS-CoV-2_93_RIGHT_1 1 - TGGGTGATTTAGAACCAGCCTC +MN908947.3 27996 28021 SARS-CoV-2_94_LEFT_1 2 + ACCCGTGTCCTATTCACTTCTATTC +MN908947.3 28394 28416 SARS-CoV-2_94_RIGHT_1 2 - TTATTGGGTAAACCTTGGGGCC +MN908947.3 28190 28214 SARS-CoV-2_95_LEFT_1 1 + GTGCGTTGTTCGTTCTATGAAGAC +MN908947.3 28572 28598 SARS-CoV-2_95_RIGHT_1 1 - ACCATCTTGGACTGAGATCTTTCATT +MN908947.3 28512 28536 SARS-CoV-2_96_LEFT_1 2 + AGATGACCAAATTGGCTACTACCG +MN908947.3 28893 28914 SARS-CoV-2_96_RIGHT_1 2 - CCATTGCCAGCCATTCTAGCA +MN908947.3 28827 28849 SARS-CoV-2_97_LEFT_1 1 + TTCCTCATCACGTAGTCGCAAC +MN908947.3 29206 29227 SARS-CoV-2_97_RIGHT_1 1 - CGACATTCCGAAGAACGCTGA +MN908947.3 29136 29161 SARS-CoV-2_98_LEFT_1 2 + CCAGGAACTAATCAGACAAGGAACT +MN908947.3 29512 29534 SARS-CoV-2_98_RIGHT_1 2 - TTTAGGCCTGAGTTGAGTCAGC +MN908947.3 29452 29475 SARS-CoV-2_99_LEFT_1 1 + CTTCTTCCTGCTGCAGATTTGGA +MN908947.3 29827 29854 SARS-CoV-2_99_RIGHT_1 1 - GCTATTAAAATCACATGGGGATAGCAC diff --git a/schemes/sars-cov-2/artic/400/v4.1.0/primer.svg b/schemes/sars-cov-2/artic/400/v4.1.0/primer.svg new file mode 100644 index 0000000..c6b07a4 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v4.1.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/artic/v4/reference.fasta b/schemes/sars-cov-2/artic/400/v4.1.0/reference.fasta similarity index 100% rename from sars-cov-2/artic/v4/reference.fasta rename to schemes/sars-cov-2/artic/400/v4.1.0/reference.fasta diff --git a/schemes/sars-cov-2/artic/400/v4.1.0/scheme.bed b/schemes/sars-cov-2/artic/400/v4.1.0/scheme.bed new file mode 100644 index 0000000..037a691 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v4.1.0/scheme.bed @@ -0,0 +1,209 @@ +MN908947.3 25 50 SARS-CoV-2_1_LEFT_1 1 + +MN908947.3 408 431 SARS-CoV-2_1_RIGHT_1 1 - +MN908947.3 324 344 SARS-CoV-2_2_LEFT_1 2 + +MN908947.3 705 727 SARS-CoV-2_2_RIGHT_1 2 - +MN908947.3 644 666 SARS-CoV-2_3_LEFT_1 1 + +MN908947.3 1017 1044 SARS-CoV-2_3_RIGHT_1 1 - +MN908947.3 944 966 SARS-CoV-2_4_LEFT_1 2 + +MN908947.3 1337 1362 SARS-CoV-2_4_RIGHT_1 2 - +MN908947.3 1245 1266 SARS-CoV-2_5_LEFT_1 1 + +MN908947.3 1623 1650 SARS-CoV-2_5_RIGHT_1 1 - +MN908947.3 1540 1562 SARS-CoV-2_6_LEFT_1 2 + +MN908947.3 1925 1948 SARS-CoV-2_6_RIGHT_1 2 - +MN908947.3 1851 1875 SARS-CoV-2_7_LEFT_1 1 + +MN908947.3 2228 2250 SARS-CoV-2_7_RIGHT_1 1 - +MN908947.3 2154 2180 SARS-CoV-2_8_LEFT_1 2 + +MN908947.3 2544 2571 SARS-CoV-2_8_RIGHT_1 2 - +MN908947.3 2483 2508 SARS-CoV-2_9_LEFT_1 1 + +MN908947.3 2861 2885 SARS-CoV-2_9_RIGHT_1 1 - +MN908947.3 2780 2813 SARS-CoV-2_10_LEFT_1 2 + +MN908947.3 2826 2850 SARS-CoV-2_10_LEFT_2 2 + +MN908947.3 3156 3177 SARS-CoV-2_10_RIGHT_1 2 - +MN908947.3 3183 3210 SARS-CoV-2_10_RIGHT_2 2 - +MN908947.3 3078 3102 SARS-CoV-2_11_LEFT_1 1 + +MN908947.3 3470 3492 SARS-CoV-2_11_RIGHT_1 1 - +MN908947.3 3390 3412 SARS-CoV-2_12_LEFT_1 2 + +MN908947.3 3769 3794 SARS-CoV-2_12_RIGHT_1 2 - +MN908947.3 3683 3705 SARS-CoV-2_13_LEFT_1 1 + +MN908947.3 4067 4093 SARS-CoV-2_13_RIGHT_1 1 - +MN908947.3 3992 4018 SARS-CoV-2_14_LEFT_1 2 + +MN908947.3 4387 4409 SARS-CoV-2_14_RIGHT_1 2 - +MN908947.3 4312 4339 SARS-CoV-2_15_LEFT_1 1 + +MN908947.3 4685 4710 SARS-CoV-2_15_RIGHT_1 1 - +MN908947.3 4620 4648 SARS-CoV-2_16_LEFT_1 2 + +MN908947.3 4995 5017 SARS-CoV-2_16_RIGHT_1 2 - +MN908947.3 4923 4953 SARS-CoV-2_17_LEFT_1 1 + +MN908947.3 5302 5331 SARS-CoV-2_17_RIGHT_1 1 - +MN908947.3 5230 5259 SARS-CoV-2_18_LEFT_1 2 + +MN908947.3 5620 5643 SARS-CoV-2_18_RIGHT_1 2 - +MN908947.3 5561 5584 SARS-CoV-2_19_LEFT_1 1 + +MN908947.3 5932 5957 SARS-CoV-2_19_RIGHT_1 1 - +MN908947.3 5867 5894 SARS-CoV-2_20_LEFT_1 2 + +MN908947.3 6247 6272 SARS-CoV-2_20_RIGHT_1 2 - +MN908947.3 6184 6210 SARS-CoV-2_21_LEFT_1 1 + +MN908947.3 6553 6582 SARS-CoV-2_21_RIGHT_1 1 - +MN908947.3 6478 6507 SARS-CoV-2_22_LEFT_1 2 + +MN908947.3 6859 6885 SARS-CoV-2_22_RIGHT_1 2 - +MN908947.3 6747 6776 SARS-CoV-2_23_LEFT_1 1 + +MN908947.3 7122 7148 SARS-CoV-2_23_RIGHT_1 1 - +MN908947.3 7127 7156 SARS-CoV-2_23_RIGHT_2 1 - +MN908947.3 7057 7084 SARS-CoV-2_24_LEFT_1 2 + +MN908947.3 7440 7467 SARS-CoV-2_24_RIGHT_1 2 - +MN908947.3 7381 7403 SARS-CoV-2_25_LEFT_1 1 + +MN908947.3 7747 7770 SARS-CoV-2_25_RIGHT_1 1 - +MN908947.3 7672 7695 SARS-CoV-2_26_LEFT_1 2 + +MN908947.3 8063 8092 SARS-CoV-2_26_RIGHT_1 2 - +MN908947.3 7997 8019 SARS-CoV-2_27_LEFT_1 1 + +MN908947.3 8367 8392 SARS-CoV-2_27_RIGHT_1 1 - +MN908947.3 8370 8395 SARS-CoV-2_27_RIGHT_2 1 - +MN908947.3 8304 8326 SARS-CoV-2_28_LEFT_1 2 + +MN908947.3 8691 8714 SARS-CoV-2_28_RIGHT_1 2 - +MN908947.3 8596 8619 SARS-CoV-2_29_LEFT_1 1 + +MN908947.3 8990 9013 SARS-CoV-2_29_RIGHT_1 1 - +MN908947.3 8919 8944 SARS-CoV-2_30_LEFT_1 2 + +MN908947.3 9306 9329 SARS-CoV-2_30_RIGHT_1 2 - +MN908947.3 9168 9192 SARS-CoV-2_31_LEFT_1 1 + +MN908947.3 9535 9564 SARS-CoV-2_31_RIGHT_1 1 - +MN908947.3 9470 9497 SARS-CoV-2_32_LEFT_1 2 + +MN908947.3 9842 9866 SARS-CoV-2_32_RIGHT_1 2 - +MN908947.3 9782 9805 SARS-CoV-2_33_LEFT_1 1 + +MN908947.3 10150 10176 SARS-CoV-2_33_RIGHT_1 1 - +MN908947.3 10076 10099 SARS-CoV-2_34_LEFT_1 2 + +MN908947.3 10465 10491 SARS-CoV-2_34_RIGHT_1 2 - +MN908947.3 10393 10419 SARS-CoV-2_35_LEFT_1 1 + +MN908947.3 10785 10810 SARS-CoV-2_35_RIGHT_1 1 - +MN908947.3 10713 10742 SARS-CoV-2_36_LEFT_1 2 + +MN908947.3 11092 11116 SARS-CoV-2_36_RIGHT_1 2 - +MN908947.3 11000 11023 SARS-CoV-2_37_LEFT_1 1 + +MN908947.3 11388 11414 SARS-CoV-2_37_RIGHT_1 1 - +MN908947.3 11305 11330 SARS-CoV-2_38_LEFT_1 2 + +MN908947.3 11689 11720 SARS-CoV-2_38_RIGHT_1 2 - +MN908947.3 11624 11651 SARS-CoV-2_39_LEFT_1 1 + +MN908947.3 12011 12033 SARS-CoV-2_39_RIGHT_1 1 - +MN908947.3 11937 11963 SARS-CoV-2_40_LEFT_1 2 + +MN908947.3 12317 12339 SARS-CoV-2_40_RIGHT_1 2 - +MN908947.3 12234 12255 SARS-CoV-2_41_LEFT_1 1 + +MN908947.3 12618 12643 SARS-CoV-2_41_RIGHT_1 1 - +MN908947.3 12519 12546 SARS-CoV-2_42_LEFT_1 2 + +MN908947.3 12895 12920 SARS-CoV-2_42_RIGHT_1 2 - +MN908947.3 12831 12856 SARS-CoV-2_43_LEFT_1 1 + +MN908947.3 13218 13240 SARS-CoV-2_43_RIGHT_1 1 - +MN908947.3 13124 13148 SARS-CoV-2_44_LEFT_1 2 + +MN908947.3 13506 13528 SARS-CoV-2_44_RIGHT_1 2 - +MN908947.3 13463 13485 SARS-CoV-2_45_LEFT_1 1 + +MN908947.3 13833 13859 SARS-CoV-2_45_RIGHT_1 1 - +MN908947.3 13752 13775 SARS-CoV-2_46_LEFT_1 2 + +MN908947.3 14120 14144 SARS-CoV-2_46_RIGHT_1 2 - +MN908947.3 14045 14075 SARS-CoV-2_47_LEFT_1 1 + +MN908947.3 14428 14457 SARS-CoV-2_47_RIGHT_1 1 - +MN908947.3 14338 14362 SARS-CoV-2_48_LEFT_1 2 + +MN908947.3 14717 14743 SARS-CoV-2_48_RIGHT_1 2 - +MN908947.3 14647 14674 SARS-CoV-2_49_LEFT_1 1 + +MN908947.3 15023 15050 SARS-CoV-2_49_RIGHT_1 1 - +MN908947.3 14953 14983 SARS-CoV-2_50_LEFT_1 2 + +MN908947.3 15336 15358 SARS-CoV-2_50_RIGHT_1 2 - +MN908947.3 15214 15237 SARS-CoV-2_51_LEFT_1 1 + +MN908947.3 15596 15619 SARS-CoV-2_51_RIGHT_1 1 - +MN908947.3 15535 15557 SARS-CoV-2_52_LEFT_1 2 + +MN908947.3 15917 15941 SARS-CoV-2_52_RIGHT_1 2 - +MN908947.3 15855 15881 SARS-CoV-2_53_LEFT_1 1 + +MN908947.3 16239 16260 SARS-CoV-2_53_RIGHT_1 1 - +MN908947.3 16112 16137 SARS-CoV-2_54_LEFT_1 2 + +MN908947.3 16483 16508 SARS-CoV-2_54_RIGHT_1 2 - +MN908947.3 16386 16408 SARS-CoV-2_55_LEFT_1 1 + +MN908947.3 16767 16796 SARS-CoV-2_55_RIGHT_1 1 - +MN908947.3 16692 16714 SARS-CoV-2_56_LEFT_1 2 + +MN908947.3 17082 17105 SARS-CoV-2_56_RIGHT_1 2 - +MN908947.3 16986 17013 SARS-CoV-2_57_LEFT_1 1 + +MN908947.3 17381 17405 SARS-CoV-2_57_RIGHT_1 1 - +MN908947.3 17323 17345 SARS-CoV-2_58_LEFT_1 2 + +MN908947.3 17688 17711 SARS-CoV-2_58_RIGHT_1 2 - +MN908947.3 17615 17642 SARS-CoV-2_59_LEFT_1 1 + +MN908947.3 17997 18022 SARS-CoV-2_59_RIGHT_1 1 - +MN908947.3 17911 17939 SARS-CoV-2_60_LEFT_1 2 + +MN908947.3 18307 18328 SARS-CoV-2_60_RIGHT_1 2 - +MN908947.3 18244 18267 SARS-CoV-2_61_LEFT_1 1 + +MN908947.3 18624 18652 SARS-CoV-2_61_RIGHT_1 1 - +MN908947.3 18550 18578 SARS-CoV-2_62_LEFT_1 2 + +MN908947.3 18936 18961 SARS-CoV-2_62_RIGHT_1 2 - +MN908947.3 18869 18891 SARS-CoV-2_63_LEFT_1 1 + +MN908947.3 19252 19277 SARS-CoV-2_63_RIGHT_1 1 - +MN908947.3 19183 19208 SARS-CoV-2_64_LEFT_1 2 + +MN908947.3 19558 19586 SARS-CoV-2_64_RIGHT_1 2 - +MN908947.3 19485 19513 SARS-CoV-2_65_LEFT_1 1 + +MN908947.3 19877 19901 SARS-CoV-2_65_RIGHT_1 1 - +MN908947.3 19810 19836 SARS-CoV-2_66_LEFT_1 2 + +MN908947.3 20186 20216 SARS-CoV-2_66_RIGHT_1 2 - +MN908947.3 20090 20117 SARS-CoV-2_67_LEFT_1 1 + +MN908947.3 20472 20497 SARS-CoV-2_67_RIGHT_1 1 - +MN908947.3 20377 20405 SARS-CoV-2_68_LEFT_1 2 + +MN908947.3 20766 20792 SARS-CoV-2_68_RIGHT_1 2 - +MN908947.3 20677 20699 SARS-CoV-2_69_LEFT_1 1 + +MN908947.3 21050 21080 SARS-CoV-2_69_RIGHT_1 1 - +MN908947.3 20988 21013 SARS-CoV-2_70_LEFT_1 2 + +MN908947.3 21358 21387 SARS-CoV-2_70_RIGHT_1 2 - +MN908947.3 21294 21316 SARS-CoV-2_71_LEFT_1 1 + +MN908947.3 21675 21700 SARS-CoV-2_71_RIGHT_1 1 - +MN908947.3 21532 21561 SARS-CoV-2_72_LEFT_1 2 + +MN908947.3 21904 21933 SARS-CoV-2_72_RIGHT_1 2 - +MN908947.3 21865 21889 SARS-CoV-2_73_LEFT_1 1 + +MN908947.3 22247 22274 SARS-CoV-2_73_RIGHT_1 1 - +MN908947.3 22091 22113 SARS-CoV-2_74_LEFT_1 2 + +MN908947.3 22474 22503 SARS-CoV-2_74_RIGHT_1 2 - +MN908947.3 22402 22428 SARS-CoV-2_75_LEFT_1 1 + +MN908947.3 22785 22805 SARS-CoV-2_75_RIGHT_1 1 - +MN908947.3 22648 22677 SARS-CoV-2_76_LEFT_2 2 + +MN908947.3 22742 22774 SARS-CoV-2_76_LEFT_1 2 + +MN908947.3 23028 23057 SARS-CoV-2_76_RIGHT_2 2 - +MN908947.3 23120 23141 SARS-CoV-2_76_RIGHT_1 2 - +MN908947.3 22944 22974 SARS-CoV-2_77_LEFT_1 1 + +MN908947.3 23327 23351 SARS-CoV-2_77_RIGHT_1 1 - +MN908947.3 23219 23246 SARS-CoV-2_78_LEFT_1 2 + +MN908947.3 23611 23635 SARS-CoV-2_78_RIGHT_1 2 - +MN908947.3 23553 23575 SARS-CoV-2_79_LEFT_1 1 + +MN908947.3 23914 23944 SARS-CoV-2_79_RIGHT_1 1 - +MN908947.3 23927 23955 SARS-CoV-2_79_RIGHT_2 1 - +MN908947.3 23853 23876 SARS-CoV-2_80_LEFT_1 2 + +MN908947.3 24233 24258 SARS-CoV-2_80_RIGHT_1 2 - +MN908947.3 24171 24194 SARS-CoV-2_81_LEFT_1 1 + +MN908947.3 24545 24567 SARS-CoV-2_81_RIGHT_1 1 - +MN908947.3 24426 24448 SARS-CoV-2_82_LEFT_1 2 + +MN908947.3 24814 24836 SARS-CoV-2_82_RIGHT_1 2 - +MN908947.3 24750 24772 SARS-CoV-2_83_LEFT_1 1 + +MN908947.3 25122 25150 SARS-CoV-2_83_RIGHT_1 1 - +MN908947.3 25051 25076 SARS-CoV-2_84_LEFT_1 2 + +MN908947.3 25438 25461 SARS-CoV-2_84_RIGHT_1 2 - +MN908947.3 25331 25353 SARS-CoV-2_85_LEFT_1 1 + +MN908947.3 25711 25740 SARS-CoV-2_85_RIGHT_1 1 - +MN908947.3 25645 25672 SARS-CoV-2_86_LEFT_1 2 + +MN908947.3 26026 26050 SARS-CoV-2_86_RIGHT_1 2 - +MN908947.3 25951 25979 SARS-CoV-2_87_LEFT_1 1 + +MN908947.3 26338 26360 SARS-CoV-2_87_RIGHT_1 1 - +MN908947.3 26242 26268 SARS-CoV-2_88_LEFT_2 2 + +MN908947.3 26255 26277 SARS-CoV-2_88_LEFT_1 2 + +MN908947.3 26635 26661 SARS-CoV-2_88_RIGHT_1 2 - +MN908947.3 26564 26587 SARS-CoV-2_89_LEFT_1 1 + +MN908947.3 26592 26621 SARS-CoV-2_89_LEFT_2 1 + +MN908947.3 26956 26979 SARS-CoV-2_89_RIGHT_1 1 - +MN908947.3 26966 26991 SARS-CoV-2_89_RIGHT_2 1 - +MN908947.3 26873 26895 SARS-CoV-2_90_LEFT_1 2 + +MN908947.3 27218 27251 SARS-CoV-2_90_RIGHT_1 2 - +MN908947.3 27256 27283 SARS-CoV-2_90_RIGHT_2 2 - +MN908947.3 27152 27177 SARS-CoV-2_91_LEFT_1 1 + +MN908947.3 27534 27560 SARS-CoV-2_91_RIGHT_1 1 - +MN908947.3 27447 27473 SARS-CoV-2_92_LEFT_1 2 + +MN908947.3 27826 27855 SARS-CoV-2_92_RIGHT_1 2 - +MN908947.3 27700 27726 SARS-CoV-2_93_LEFT_1 1 + +MN908947.3 28082 28104 SARS-CoV-2_93_RIGHT_1 1 - +MN908947.3 27996 28021 SARS-CoV-2_94_LEFT_1 2 + +MN908947.3 28394 28416 SARS-CoV-2_94_RIGHT_1 2 - +MN908947.3 28190 28214 SARS-CoV-2_95_LEFT_1 1 + +MN908947.3 28572 28598 SARS-CoV-2_95_RIGHT_1 1 - +MN908947.3 28512 28536 SARS-CoV-2_96_LEFT_1 2 + +MN908947.3 28893 28914 SARS-CoV-2_96_RIGHT_1 2 - +MN908947.3 28827 28849 SARS-CoV-2_97_LEFT_1 1 + +MN908947.3 29206 29227 SARS-CoV-2_97_RIGHT_1 1 - +MN908947.3 29136 29161 SARS-CoV-2_98_LEFT_1 2 + +MN908947.3 29512 29534 SARS-CoV-2_98_RIGHT_1 2 - +MN908947.3 29452 29475 SARS-CoV-2_99_LEFT_1 1 + +MN908947.3 29827 29854 SARS-CoV-2_99_RIGHT_1 1 - diff --git a/schemes/sars-cov-2/artic/400/v5.0.0/info.yml b/schemes/sars-cov-2/artic/400/v5.0.0/info.yml new file mode 100644 index 0000000..6e61f58 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.0.0/info.yml @@ -0,0 +1,17 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: artic +amplicon_size: 400 +version: v5.0.0 +derived_from: sars-cov-2/artic/400/v4.1.0 +aliases: +- ARTIC/V5 +developers: +- ARTIC network +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5 +source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v5.0.0 +citations: +- https://doi.org/10.1101%2F2020.09.04.283077 +license: CC-BY-SA-4.0 +primer_checksum: primaschema:bdaeb59a7ef0ec12 +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/artic/400/v5.0.0/primer.bed b/schemes/sars-cov-2/artic/400/v5.0.0/primer.bed new file mode 100644 index 0000000..12a9cf4 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.0.0/primer.bed @@ -0,0 +1,192 @@ +MN908947.3 23 48 SARS-CoV-2_1_LEFT_0 1 + GTAACAAACCAACCAACTTTCGATC +MN908947.3 398 423 SARS-CoV-2_1_RIGHT_0 1 - AAGCCACAAGTGCCATCTTTAAGAT +MN908947.3 344 366 SARS-CoV-2_2_LEFT_0 2 + TCGTACGTGGCTTTGGAGACTC +MN908947.3 707 732 SARS-CoV-2_2_RIGHT_0 2 - TCTTCATAAGGATCAGTGCCAAGCT +MN908947.3 664 687 SARS-CoV-2_3_LEFT_0 1 + CATAGTTACGGCGCCGATCTAAA +MN908947.3 1018 1047 SARS-CoV-2_3_RIGHT_0 1 - TTTGCCAATTTAATTTCAAAAGGTGTCTG +MN908947.3 970 995 SARS-CoV-2_4_LEFT_0 2 + CATGAAATTGCTTGGTACACGGAAC +MN908947.3 1340 1370 SARS-CoV-2_4_RIGHT_0 2 - AAATTTTAACAACAGCATTTTGGGGTAAGT +MN908947.3 1292 1320 SARS-CoV-2_5_LEFT_0 1 + TTTGTGGCACTGAGAATTTGACTAAAGA +MN908947.3 1660 1692 SARS-CoV-2_5_RIGHT_0 1 - ATAATGGCGATCTCTTCATTAAGTTTAAAGTC +MN908947.3 1609 1640 SARS-CoV-2_6_LEFT_0 2 + AACCTTCTTGAAATACTCCAAAAAGAGAAAG +MN908947.3 1965 1998 SARS-CoV-2_6_RIGHT_0 2 - AGTGAATACTGTGAAATTCCATCTAGTATTGTT +MN908947.3 1921 1945 SARS-CoV-2_7_LEFT_0 1 + GAAACTGCTCAAAATTCTGTGCGT +MN908947.3 2283 2316 SARS-CoV-2_7_RIGHT_0 1 - TTATTTACAAGCTTAAAGAATGTCTGAACACTC +MN908947.3 2229 2252 SARS-CoV-2_8_LEFT_0 2 + TGCTTGTGAAATTGTCGGTGGAC +MN908947.3 2603 2629 SARS-CoV-2_8_RIGHT_0 2 - AAGCCCGTTAATACAAACTGGTGTAC +MN908947.3 2533 2563 SARS-CoV-2_9_LEFT_0 1 + GTCTTGAAAACTGGTGATTTACAACCATTA +MN908947.3 2900 2933 SARS-CoV-2_9_RIGHT_0 1 - GTAATTCAGATACTGGTTGCAAAGTTTTTATGA +MN908947.3 2854 2880 SARS-CoV-2_10_LEFT_0 2 + CTCGGTACAGAAGTAAATGAGTTCGC +MN908947.3 3233 3254 SARS-CoV-2_10_RIGHT_0 2 - TGTCCTCACTGCCGTCTTGTT +MN908947.3 3184 3213 SARS-CoV-2_11_LEFT_0 1 + GAGCAAGAAGAAGATTGGTTAGATGATGA +MN908947.3 3560 3584 SARS-CoV-2_11_RIGHT_0 1 - CGCTTAAAACACAACTACCACCCA +MN908947.3 3510 3540 SARS-CoV-2_12_LEFT_0 2 + CATGCAAGTTGAATCTGATGATTACATAGC +MN908947.3 3883 3913 SARS-CoV-2_12_RIGHT_0 2 - AGTTATAAATGGCTTAACTTCCTCTTTAGG +MN908947.3 3791 3824 SARS-CoV-2_13_LEFT_0 1 + CTGTCTTTGATAAAAATCTCTATGACAAACTTG +MN908947.3 4147 4180 SARS-CoV-2_13_RIGHT_0 1 - CTTTTTAGTAGGTATAACCACAGCAGTTAAAAC +MN908947.3 4079 4108 SARS-CoV-2_14_LEFT_0 2 + GTGACATTGACATCACTTTCTTAAAGAAA +MN908947.3 4457 4488 SARS-CoV-2_14_RIGHT_0 2 - CCCTTATATTTACGCTGTATAGTTGAAACTA +MN908947.3 4403 4425 SARS-CoV-2_15_LEFT_0 1 + CACATGCAGAAGAAACACGCAA +MN908947.3 4776 4803 SARS-CoV-2_15_RIGHT_0 1 - TCTTTATAGGAACCAGCAAGTGAGATG +MN908947.3 4723 4756 SARS-CoV-2_16_LEFT_0 2 + AATGGTTATCTTACTTCTTCTTCTAAAACACCT +MN908947.3 5089 5119 SARS-CoV-2_16_RIGHT_0 2 - AAATGTTTTACCTTCATGTGAATTATGAGG +MN908947.3 5036 5063 SARS-CoV-2_17_LEFT_0 1 + GACAACAGTTTGGTCCAACTTATTTGG +MN908947.3 5398 5429 SARS-CoV-2_17_RIGHT_0 1 - CTGTCTTATTACAGTAGGCTAAGATAAGTGC +MN908947.3 5344 5370 SARS-CoV-2_18_LEFT_0 2 + GCTCTACAAGATGCTTATTACAGAGC +MN908947.3 5716 5744 SARS-CoV-2_18_RIGHT_0 2 - ACTCACTAGCACAAGTAAATGTACCATG +MN908947.3 5671 5696 SARS-CoV-2_19_LEFT_0 1 + CCTTTTGTTATGATGTCAGCACCAC +MN908947.3 6031 6062 SARS-CoV-2_19_RIGHT_0 1 - CACATACAAACTTAAAATTATCGAAGCTTGC +MN908947.3 5891 5923 SARS-CoV-2_20_LEFT_0 2 + CCATAAAACCAGTTACTTATAAATTGGATGGT +MN908947.3 6257 6288 SARS-CoV-2_20_RIGHT_0 2 - CAGGTATTTGGTTTATACGTGGCTTTATTAG +MN908947.3 6204 6237 SARS-CoV-2_21_LEFT_0 1 + GAAAGGAGCTAAATTGTTACATAAACCTATTGT +MN908947.3 6562 6595 SARS-CoV-2_21_RIGHT_0 1 - AGGTTTCTTAATAGTAAGACTAGAATTGTCTAC +MN908947.3 6515 6542 SARS-CoV-2_22_LEFT_0 2 + TAAAAATTACAGAAGAGGTTGGCCACA +MN908947.3 6882 6915 SARS-CoV-2_22_RIGHT_0 2 - TAATTAAATGAAGCCTCTAGACAAAATTTACCG +MN908947.3 6823 6854 SARS-CoV-2_23_LEFT_0 1 + AATTCTAGAATTAAAGCATCTATGCCGACTA +MN908947.3 7199 7229 SARS-CoV-2_23_RIGHT_0 1 - CAAAAGCAGTTAAATCCCATTTAAAAGATG +MN908947.3 7145 7179 SARS-CoV-2_24_LEFT_0 2 + GTTTAGATTCTTTAGACACCTATCCTTCTTTAGA +MN908947.3 7518 7545 SARS-CoV-2_24_RIGHT_0 2 - ACAATAGTTGTACATTCGACTCTTGTT +MN908947.3 7456 7482 SARS-CoV-2_25_LEFT_0 1 + GTGCATGTTGTAGACGGTTGTAATTC +MN908947.3 7819 7850 SARS-CoV-2_25_RIGHT_0 1 - CTCTCAGGTTGTCTAAGTTAACAAAATGAGA +MN908947.3 7768 7797 SARS-CoV-2_26_LEFT_0 2 + CATCTTTACTTTGATAAAGCTGGTCAAAA +MN908947.3 8136 8169 SARS-CoV-2_26_RIGHT_0 2 - GAAATAAAAGTAGATAAGACATTGTCTAAGGAC +MN908947.3 8085 8112 SARS-CoV-2_27_LEFT_0 1 + AAAACTCAAAACACTAGTTGCAACTGC +MN908947.3 8468 8498 SARS-CoV-2_27_RIGHT_0 1 - CACATGTCAACTTAAAAGGTAAGTTATTCT +MN908947.3 8406 8436 SARS-CoV-2_28_LEFT_0 2 + CGTTAAAGATTTCATGTCATTGTCTGAACA +MN908947.3 8781 8806 SARS-CoV-2_28_RIGHT_0 2 - ATTAGTATAACTACCACCACGCTGG +MN908947.3 8732 8761 SARS-CoV-2_29_LEFT_0 1 + CAGATACTTGTTTTGCTAACAAACATGCT +MN908947.3 9107 9129 SARS-CoV-2_29_RIGHT_0 1 - ACATAACGTGTGTCAGGGCGTA +MN908947.3 9023 9052 SARS-CoV-2_30_LEFT_0 2 + CAATTTTTAAAGATGCTTCTGGTAAGCCA +MN908947.3 9397 9423 SARS-CoV-2_30_RIGHT_0 2 - ACAATACCACCAGCTACTATAGATGC +MN908947.3 9322 9355 SARS-CoV-2_31_LEFT_0 1 + GGTGTAGATGCTGTAAATTTACTTACTAATATG +MN908947.3 9673 9706 SARS-CoV-2_31_RIGHT_0 1 - ACAAATGATATAAGCAATTGTTATCCAGAAAGG +MN908947.3 9571 9604 SARS-CoV-2_32_LEFT_0 2 + GGTGTTTATTCTGTTATTTACTTGTACTTGACA +MN908947.3 9949 9971 SARS-CoV-2_32_RIGHT_0 2 - TTGCGAGATGACAACAAGCAGC +MN908947.3 9896 9929 SARS-CoV-2_33_LEFT_0 1 + ATAATAAGTACAAGTATTTTAGTGGAGCAATGG +MN908947.3 10266 10295 SARS-CoV-2_33_RIGHT_0 1 - AATGTCCAATAACCCTGAGTTGAACATTA +MN908947.3 10215 10245 SARS-CoV-2_34_LEFT_0 2 + TGAAGATTTACTCATTCGTAAGTCTAATCA +MN908947.3 10587 10615 SARS-CoV-2_34_RIGHT_0 2 - GTCAACAAAAGGTCCATAAAAGTTACCT +MN908947.3 10527 10557 SARS-CoV-2_35_LEFT_0 1 + TTTTTGTTACATGCACCATATGGAATTACC +MN908947.3 10897 10927 SARS-CoV-2_35_RIGHT_0 1 - AAATTCATCTTCTAATAAAGCACTACCCAA +MN908947.3 10832 10865 SARS-CoV-2_36_LEFT_0 2 + CCGTTTTAGATATGTGTGCTTCATTAAAAGAAT +MN908947.3 11201 11232 SARS-CoV-2_36_RIGHT_0 2 - GGCATATAGACCATATTAAAATAAGCTACAG +MN908947.3 11152 11181 SARS-CoV-2_37_LEFT_0 1 + AAACATAAGCATGCATTTCTCTGTTTGTT +MN908947.3 11514 11536 SARS-CoV-2_37_RIGHT_0 1 - ACCTCTGGCCAAAAACATGACA +MN908947.3 11463 11494 SARS-CoV-2_38_LEFT_0 2 + GTGGGCTCTTATAATCTCTGTTACTTCTAAC +MN908947.3 11832 11863 SARS-CoV-2_38_RIGHT_0 2 - CTTTACATCTGACATTTTAGACTGTACAGTG +MN908947.3 11785 11811 SARS-CoV-2_39_LEFT_0 1 + AACATTAAATTGTTGGGTGTTGGTGG +MN908947.3 12161 12185 SARS-CoV-2_39_RIGHT_0 1 - CAGAATCACCATTAGCAACAGCCT +MN908947.3 12112 12137 SARS-CoV-2_40_LEFT_0 2 + TCCCTTCCATCATATGCAGCTTTTG +MN908947.3 12477 12510 SARS-CoV-2_40_RIGHT_0 2 - TTTTTATATGTGTTATAGTCTGGTATGACAACC +MN908947.3 12419 12444 SARS-CoV-2_41_LEFT_0 1 + CAAGAGATGGTTGTGTTCCCTTGAA +MN908947.3 12794 12819 SARS-CoV-2_41_RIGHT_0 1 - AACAGTGCAAGTACAAACCTACCTC +MN908947.3 12752 12774 SARS-CoV-2_42_LEFT_0 2 + GCACTGATGACAATGCGTTAGC +MN908947.3 13121 13146 SARS-CoV-2_42_RIGHT_0 2 - CAATTAGTGATTGGTTGTCCCCCAC +MN908947.3 13075 13099 SARS-CoV-2_43_LEFT_0 1 + GCTTTTGCTGTAGATGCTGCTAAA +MN908947.3 13458 13480 SARS-CoV-2_43_RIGHT_0 1 - CACCGCAAACCCGTTTAAAAAC +MN908947.3 13415 13435 SARS-CoV-2_44_LEFT_0 2 + ATCAACTCCGCGAACCCATG +MN908947.3 13787 13815 SARS-CoV-2_44_RIGHT_0 2 - TGCCATTGTGTATTTAGTAAGACGTTGA +MN908947.3 13738 13767 SARS-CoV-2_45_LEFT_0 1 + ACTTCTTTAAGTTTAGAATAGACGGTGAC +MN908947.3 14120 14144 SARS-CoV-2_45_RIGHT_0 1 - TCTACAACAGGAACTCCACTACCT +MN908947.3 14073 14100 SARS-CoV-2_46_LEFT_0 2 + CTCAATGGTAACTGGTATGATTTCGGT +MN908947.3 14427 14457 SARS-CoV-2_46_RIGHT_0 2 - TGGAACACCATCAACAAATATTTTTCTCAC +MN908947.3 14375 14407 SARS-CoV-2_47_LEFT_0 1 + CTTTAATGTTTTATTCTCTACAGTGTTCCCAC +MN908947.3 14745 14775 SARS-CoV-2_47_RIGHT_0 1 - ATCCTGAGCAAAGAAGAAGTGTTTTAATTC +MN908947.3 14700 14725 SARS-CoV-2_48_LEFT_0 2 + GACTTTGCTGTGTCTAAGGGTTTCT +MN908947.3 15065 15095 SARS-CoV-2_48_RIGHT_0 2 - TTCTTTGCACTAATGGCATACTTAAGATTC +MN908947.3 15016 15045 SARS-CoV-2_49_LEFT_0 1 + CACTTTTCGCATATACAAAACGTAATGTC +MN908947.3 15386 15416 SARS-CoV-2_49_RIGHT_0 1 - CACTCATTAGCTAATCTATAGAAACGGTGT +MN908947.3 15342 15366 SARS-CoV-2_50_LEFT_0 2 + TCACTTGTTCTTGCTCGCAAACAT +MN908947.3 15716 15742 SARS-CoV-2_50_RIGHT_0 2 - TATTGAAACACACAACAGCATCGTCA +MN908947.3 15659 15688 SARS-CoV-2_51_LEFT_0 1 + CTTTGTGAATGAGTTTTACGCATATTTGC +MN908947.3 16028 16059 SARS-CoV-2_51_RIGHT_0 1 - AGGATGTTTAGTAAGTGGGTAAGCATCTATA +MN908947.3 15964 15998 SARS-CoV-2_52_LEFT_0 2 + GTTTTGTAGATGATATCGTAAAAACAGATGGTAC +MN908947.3 16331 16364 SARS-CoV-2_52_RIGHT_0 2 - AAGACTAATTTATGTGATGTTGATATGACATGG +MN908947.3 16285 16311 SARS-CoV-2_53_LEFT_0 1 + GTGCTTGCATACGTAGACCATTCTTA +MN908947.3 16650 16679 SARS-CoV-2_53_RIGHT_0 1 - GACAGTTTAAATGTCTCCTCAGTAGCTTT +MN908947.3 16603 16630 SARS-CoV-2_54_LEFT_0 2 + CTAACACCTGTACTGAAAGACTCAAGC +MN908947.3 16985 17011 SARS-CoV-2_54_RIGHT_0 2 - AGATATTGAGTGTTGGGTATAAGCCA +MN908947.3 16929 16954 SARS-CoV-2_55_LEFT_0 1 + GTAATGCCATTAAGTGCACCTACAC +MN908947.3 17301 17329 SARS-CoV-2_55_RIGHT_0 1 - CAGGCAATGCATTTACAGTACAAAAGAC +MN908947.3 17182 17212 SARS-CoV-2_56_LEFT_0 2 + CACTATGTGAGAAGGCATTAAAATATTTGC +MN908947.3 17560 17582 SARS-CoV-2_56_RIGHT_0 2 - ACAATTTCAGCAGGACAACGCC +MN908947.3 17478 17507 SARS-CoV-2_57_LEFT_0 1 + GGCACACTAGAACCAGAATATTTCAATTC +MN908947.3 17859 17886 SARS-CoV-2_57_RIGHT_0 1 - AGTGGTTTGAGTGAATATGACATAGTC +MN908947.3 17813 17839 SARS-CoV-2_58_LEFT_0 2 + GGGACTACCAACTCAAACTGTTGATT +MN908947.3 18181 18212 SARS-CoV-2_58_RIGHT_0 2 - ATCATAGAGATGAGTCTTCTATAGGTCATGT +MN908947.3 18121 18153 SARS-CoV-2_59_LEFT_0 1 + GTGTTGACACTAAATTCAAAACTGAAGGTTTA +MN908947.3 18504 18527 SARS-CoV-2_59_RIGHT_0 1 - CGCACTACATTCCAAGGAAGTCC +MN908947.3 18460 18484 SARS-CoV-2_60_LEFT_0 2 + CGCCTGGAGATCAATTTAAACACC +MN908947.3 18835 18860 SARS-CoV-2_60_RIGHT_0 2 - GCATCACAACTAGCTACATGTGCAT +MN908947.3 18789 18815 SARS-CoV-2_61_LEFT_0 1 + GGTAACCTACAAAGCAACCATGATCT +MN908947.3 19170 19195 SARS-CoV-2_61_RIGHT_0 1 - TCCAAAATAGGCATACACCATCTGT +MN908947.3 19101 19134 SARS-CoV-2_62_LEFT_0 2 + CCTTGTAGTGACAAAGCTTATAAAATAGAAGAA +MN908947.3 19469 19495 SARS-CoV-2_62_RIGHT_0 2 - GTCTACAGACAGCACCACCTAAATTG +MN908947.3 19415 19449 SARS-CoV-2_63_LEFT_0 1 + AGTGTCAGATATAGATTATGTACCACTAAAGTCT +MN908947.3 19770 19796 SARS-CoV-2_63_RIGHT_0 1 - GCCCAAAGCTCAAATGCTACATTAAC +MN908947.3 19721 19750 SARS-CoV-2_64_LEFT_0 2 + AGTTGATGGTGTTGATGTAGAATTGTTTG +MN908947.3 20091 20121 SARS-CoV-2_64_RIGHT_0 2 - TAATGTGACTCCATTAAGACTAGCTTGTTT +MN908947.3 20028 20054 SARS-CoV-2_65_LEFT_0 1 + GCCCGTAATGGTGTTCTTATTACAGA +MN908947.3 20408 20441 SARS-CoV-2_65_RIGHT_0 1 - GTACTGTCCATAGGAATAAAATCTTCTAATTCA +MN908947.3 20358 20388 SARS-CoV-2_66_LEFT_0 2 + GGTTTACATCTACTGATTGGACTAGCTAAA +MN908947.3 20729 20758 SARS-CoV-2_66_RIGHT_0 2 - CACTATCACCATAATTTTGAAGGTCACAC +MN908947.3 20680 20708 SARS-CoV-2_67_LEFT_0 1 + GTGTTGCTATGCCTAATCTTTACAAAAT +MN908947.3 21047 21080 SARS-CoV-2_67_RIGHT_0 1 - TTTGTAACATTTTTAGTCTTAGGGTCGTACATA +MN908947.3 20991 21018 SARS-CoV-2_68_LEFT_0 2 + ATTGGTGATTGTGCAACTGTACATACA +MN908947.3 21372 21402 SARS-CoV-2_68_RIGHT_0 2 - ACTCATGTCAAATAAAGAATAGGAAGACAA +MN908947.3 21322 21352 SARS-CoV-2_69_LEFT_0 1 + ATGTCATGCATGCAAATTACATATTTTGGA +MN908947.3 21696 21722 SARS-CoV-2_69_RIGHT_0 1 - AGTCCTGAGTTGAATGTAAAACTGAG +MN908947.3 21579 21607 SARS-CoV-2_70_LEFT_0 2 + TTTATTGCCACTAGTCTCTAGTCAGTGT +MN908947.3 21927 21960 SARS-CoV-2_70_RIGHT_0 2 - AATTCACAGACTTTAATAACAACATTAGTAGCG +MN908947.3 21866 21894 SARS-CoV-2_71_LEFT_0 1 + GAGGCTGGATTTTTGGTACTACTTTAGA +MN908947.3 22238 22266 SARS-CoV-2_71_RIGHT_0 1 - ATGTTAATACCTATTGGCAAATCTACCA +MN908947.3 22156 22189 SARS-CoV-2_72_LEFT_0 2 + GGTTATTTTAAAATATATTCTAAGCACACGCCT +MN908947.3 22517 22547 SARS-CoV-2_72_RIGHT_0 2 - ATCTAACAATAGATTCTGTTGGTTGGACTC +MN908947.3 22466 22494 SARS-CoV-2_73_LEFT_0 1 + CGTTGAAATCCTTCACTGTAGAAAAAGG +MN908947.3 22839 22866 SARS-CoV-2_73_RIGHT_0 1 - GCTATAACGCAGCCTGTAAAATCATCT +MN908947.3 22742 22774 SARS-CoV-2_74_LEFT_0 2 + ATGTCTATGCAGATTCATTTGTAATTAGAGGT +MN908947.3 23119 23140 SARS-CoV-2_74_RIGHT_0 2 - TCCACAAACAGTTGCTGGTGC +MN908947.3 22922 22954 SARS-CoV-2_75_LEFT_0 1 + GATTGTTTAGGAAGTCTAATCTCAAACCTTTT +MN908947.3 23296 23324 SARS-CoV-2_75_RIGHT_0 1 - TAATGTCAAGAATCTCAAGTGTCTGTGG +MN908947.3 23229 23258 SARS-CoV-2_76_LEFT_0 2 + CAAAAAGTTTCTGCCTTTCCAACAATTTG +MN908947.3 23609 23631 SARS-CoV-2_76_RIGHT_0 2 - TGACTAGCTACACTACGTGCCC +MN908947.3 23563 23589 SARS-CoV-2_77_LEFT_0 1 + GCAGGTATATGCGCTAGTTATCAGAC +MN908947.3 23914 23944 SARS-CoV-2_77_RIGHT_0 1 - AATTGGTGGTGTTTTGTAAATTTGTTTGAC +MN908947.3 23823 23853 SARS-CoV-2_78_LEFT_0 2 + GCAATATGGCAGTTTTTGTACACAATTAAA +MN908947.3 24209 24231 SARS-CoV-2_78_RIGHT_0 2 - GCACCAAAGGTCCAACCAGAAG +MN908947.3 24160 24189 SARS-CoV-2_79_LEFT_0 1 + GATGAAATGATTGCTCAATACACTTCTGC +MN908947.3 24535 24560 SARS-CoV-2_79_RIGHT_0 1 - TGCCTGTGATCAACCTATCAATTTG +MN908947.3 24442 24468 SARS-CoV-2_80_LEFT_0 2 + ACGCTTGTTAAACAACTTAGCTCCAA +MN908947.3 24815 24839 SARS-CoV-2_80_RIGHT_0 2 - CTTCACGAGGAAAGTGTGCTTTTC +MN908947.3 24751 24774 SARS-CoV-2_81_LEFT_0 1 + CATGTGACTTATGTCCCTGCACA +MN908947.3 25120 25151 SARS-CoV-2_81_RIGHT_0 1 - GAGATTCATTTAAATTCTTGGCAACCTCATT +MN908947.3 25053 25082 SARS-CoV-2_82_LEFT_0 2 + TGATTTAGGTGACATCTCTGGCATTAATG +MN908947.3 25423 25452 SARS-CoV-2_82_RIGHT_0 2 - GATTTCACCTTGCTTCAAAGTTACAGTTC +MN908947.3 25372 25402 SARS-CoV-2_83_LEFT_0 1 + CATTACACATAAACGAACTTATGGATTTGT +MN908947.3 25744 25777 SARS-CoV-2_83_RIGHT_0 1 - GCCAAAGCCTCATTATTATTCTTACAAAGTTTA +MN908947.3 25696 25724 SARS-CoV-2_84_LEFT_0 2 + AAGCCCCTTTTCTCTATCTTTATGCTTT +MN908947.3 26059 26086 SARS-CoV-2_84_RIGHT_0 2 - TGAAGAAGGTAACATGTTCAACACCAG +MN908947.3 26011 26039 SARS-CoV-2_85_LEFT_0 1 + TCACTTCAGACTATTACCAGCTGTACTC +MN908947.3 26382 26411 SARS-CoV-2_85_RIGHT_0 1 - AAAGAAGGTTTTACAAGACTCACGTTAAC +MN908947.3 26339 26362 SARS-CoV-2_86_LEFT_0 2 + CATCCTTACTGCGCTTCGATTGT +MN908947.3 26730 26756 SARS-CoV-2_86_RIGHT_0 2 - ACCGGTGATCCAATTTATTCTGTAAA +MN908947.3 26639 26672 SARS-CoV-2_87_LEFT_0 1 + GCCAACAGGAATAGGTTTTTGTATATAATTAAG +MN908947.3 27011 27038 SARS-CoV-2_87_RIGHT_0 1 - TGTAGCAACAGTGATTTCTTTAGGCAG +MN908947.3 26965 26989 SARS-CoV-2_88_LEFT_0 2 + TCTTCGTATTGCTGGACACCATCT +MN908947.3 27342 27372 SARS-CoV-2_88_RIGHT_0 2 - TGGTTGCTCTTCATCTAATTGAGAATATTT +MN908947.3 27218 27251 SARS-CoV-2_89_LEFT_0 1 + CTTTCAGGTTACTATAGCAGAGATATTACTAAT +MN908947.3 27583 27603 SARS-CoV-2_89_RIGHT_0 1 - GCCGTCAGGACAAGCAAAAG +MN908947.3 27530 27558 SARS-CoV-2_90_LEFT_0 2 + TCATCCTCTAGCTGATAACAAATTTGCA +MN908947.3 27927 27950 SARS-CoV-2_90_RIGHT_0 2 - TTCTTGGTGAAATGCAGCTACAG +MN908947.3 27832 27860 SARS-CoV-2_91_LEFT_0 1 + TATCTTTTGGTTCTCACTTGAACTGCAA +MN908947.3 28209 28237 SARS-CoV-2_91_RIGHT_0 1 - CGAACGTCATGATACTCTAAAAAGTCTT +MN908947.3 28135 28166 SARS-CoV-2_92_LEFT_0 2 + TTCCTGTTTACCTTTTACAATTAATTGCCAG +MN908947.3 28513 28539 SARS-CoV-2_92_RIGHT_0 2 - CTTCGGTAGTAGCCAATTTGGTCATC +MN908947.3 28473 28493 SARS-CoV-2_93_LEFT_0 1 + TCGAGGACAAGGCGTTCCAA +MN908947.3 28849 28873 SARS-CoV-2_93_RIGHT_0 1 - GCCTGGAGTTGAATTTCTTGAACT +MN908947.3 28808 28829 SARS-CoV-2_94_LEFT_0 2 + GCAGTCAAGCCTCTTCTCGTT +MN908947.3 29203 29224 SARS-CoV-2_94_RIGHT_0 2 - CATTCCGAAGAACGCTGAAGC +MN908947.3 29159 29183 SARS-CoV-2_95_LEFT_0 1 + CTGATTACAAACATTGGCCGCAAA +MN908947.3 29538 29559 SARS-CoV-2_95_RIGHT_0 1 - ATCTGCCTTGTGTGGTCTGCA +MN908947.3 29493 29515 SARS-CoV-2_96_LEFT_0 2 + GCAACAATCCATGAGCAGTGCT +MN908947.3 29840 29873 SARS-CoV-2_96_RIGHT_0 2 - TTTGTCATTCTCCTAAGAAGCTATTAAAATCAC diff --git a/schemes/sars-cov-2/artic/400/v5.0.0/primer.svg b/schemes/sars-cov-2/artic/400/v5.0.0/primer.svg new file mode 100644 index 0000000..38fcfe7 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/artic/v5.0.0_400/reference.fasta b/schemes/sars-cov-2/artic/400/v5.0.0/reference.fasta similarity index 100% rename from sars-cov-2/artic/v5.0.0_400/reference.fasta rename to schemes/sars-cov-2/artic/400/v5.0.0/reference.fasta diff --git a/schemes/sars-cov-2/artic/400/v5.0.0/scheme.bed b/schemes/sars-cov-2/artic/400/v5.0.0/scheme.bed new file mode 100644 index 0000000..eb4564c --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.0.0/scheme.bed @@ -0,0 +1,192 @@ +MN908947.3 23 48 SARS-CoV-2_1_LEFT_0 1 + +MN908947.3 398 423 SARS-CoV-2_1_RIGHT_0 1 - +MN908947.3 344 366 SARS-CoV-2_2_LEFT_0 2 + +MN908947.3 707 732 SARS-CoV-2_2_RIGHT_0 2 - +MN908947.3 664 687 SARS-CoV-2_3_LEFT_0 1 + +MN908947.3 1018 1047 SARS-CoV-2_3_RIGHT_0 1 - +MN908947.3 970 995 SARS-CoV-2_4_LEFT_0 2 + +MN908947.3 1340 1370 SARS-CoV-2_4_RIGHT_0 2 - +MN908947.3 1292 1320 SARS-CoV-2_5_LEFT_0 1 + +MN908947.3 1660 1692 SARS-CoV-2_5_RIGHT_0 1 - +MN908947.3 1609 1640 SARS-CoV-2_6_LEFT_0 2 + +MN908947.3 1965 1998 SARS-CoV-2_6_RIGHT_0 2 - +MN908947.3 1921 1945 SARS-CoV-2_7_LEFT_0 1 + +MN908947.3 2283 2316 SARS-CoV-2_7_RIGHT_0 1 - +MN908947.3 2229 2252 SARS-CoV-2_8_LEFT_0 2 + +MN908947.3 2603 2629 SARS-CoV-2_8_RIGHT_0 2 - +MN908947.3 2533 2563 SARS-CoV-2_9_LEFT_0 1 + +MN908947.3 2900 2933 SARS-CoV-2_9_RIGHT_0 1 - +MN908947.3 2854 2880 SARS-CoV-2_10_LEFT_0 2 + +MN908947.3 3233 3254 SARS-CoV-2_10_RIGHT_0 2 - +MN908947.3 3184 3213 SARS-CoV-2_11_LEFT_0 1 + +MN908947.3 3560 3584 SARS-CoV-2_11_RIGHT_0 1 - +MN908947.3 3510 3540 SARS-CoV-2_12_LEFT_0 2 + +MN908947.3 3883 3913 SARS-CoV-2_12_RIGHT_0 2 - +MN908947.3 3791 3824 SARS-CoV-2_13_LEFT_0 1 + +MN908947.3 4147 4180 SARS-CoV-2_13_RIGHT_0 1 - +MN908947.3 4079 4108 SARS-CoV-2_14_LEFT_0 2 + +MN908947.3 4457 4488 SARS-CoV-2_14_RIGHT_0 2 - +MN908947.3 4403 4425 SARS-CoV-2_15_LEFT_0 1 + +MN908947.3 4776 4803 SARS-CoV-2_15_RIGHT_0 1 - +MN908947.3 4723 4756 SARS-CoV-2_16_LEFT_0 2 + +MN908947.3 5089 5119 SARS-CoV-2_16_RIGHT_0 2 - +MN908947.3 5036 5063 SARS-CoV-2_17_LEFT_0 1 + +MN908947.3 5398 5429 SARS-CoV-2_17_RIGHT_0 1 - +MN908947.3 5344 5370 SARS-CoV-2_18_LEFT_0 2 + +MN908947.3 5716 5744 SARS-CoV-2_18_RIGHT_0 2 - +MN908947.3 5671 5696 SARS-CoV-2_19_LEFT_0 1 + +MN908947.3 6031 6062 SARS-CoV-2_19_RIGHT_0 1 - +MN908947.3 5891 5923 SARS-CoV-2_20_LEFT_0 2 + +MN908947.3 6257 6288 SARS-CoV-2_20_RIGHT_0 2 - +MN908947.3 6204 6237 SARS-CoV-2_21_LEFT_0 1 + +MN908947.3 6562 6595 SARS-CoV-2_21_RIGHT_0 1 - +MN908947.3 6515 6542 SARS-CoV-2_22_LEFT_0 2 + +MN908947.3 6882 6915 SARS-CoV-2_22_RIGHT_0 2 - +MN908947.3 6823 6854 SARS-CoV-2_23_LEFT_0 1 + +MN908947.3 7199 7229 SARS-CoV-2_23_RIGHT_0 1 - +MN908947.3 7145 7179 SARS-CoV-2_24_LEFT_0 2 + +MN908947.3 7518 7545 SARS-CoV-2_24_RIGHT_0 2 - +MN908947.3 7456 7482 SARS-CoV-2_25_LEFT_0 1 + +MN908947.3 7819 7850 SARS-CoV-2_25_RIGHT_0 1 - +MN908947.3 7768 7797 SARS-CoV-2_26_LEFT_0 2 + +MN908947.3 8136 8169 SARS-CoV-2_26_RIGHT_0 2 - +MN908947.3 8085 8112 SARS-CoV-2_27_LEFT_0 1 + +MN908947.3 8468 8498 SARS-CoV-2_27_RIGHT_0 1 - +MN908947.3 8406 8436 SARS-CoV-2_28_LEFT_0 2 + +MN908947.3 8781 8806 SARS-CoV-2_28_RIGHT_0 2 - +MN908947.3 8732 8761 SARS-CoV-2_29_LEFT_0 1 + +MN908947.3 9107 9129 SARS-CoV-2_29_RIGHT_0 1 - +MN908947.3 9023 9052 SARS-CoV-2_30_LEFT_0 2 + +MN908947.3 9397 9423 SARS-CoV-2_30_RIGHT_0 2 - +MN908947.3 9322 9355 SARS-CoV-2_31_LEFT_0 1 + +MN908947.3 9673 9706 SARS-CoV-2_31_RIGHT_0 1 - +MN908947.3 9571 9604 SARS-CoV-2_32_LEFT_0 2 + +MN908947.3 9949 9971 SARS-CoV-2_32_RIGHT_0 2 - +MN908947.3 9896 9929 SARS-CoV-2_33_LEFT_0 1 + +MN908947.3 10266 10295 SARS-CoV-2_33_RIGHT_0 1 - +MN908947.3 10215 10245 SARS-CoV-2_34_LEFT_0 2 + +MN908947.3 10587 10615 SARS-CoV-2_34_RIGHT_0 2 - +MN908947.3 10527 10557 SARS-CoV-2_35_LEFT_0 1 + +MN908947.3 10897 10927 SARS-CoV-2_35_RIGHT_0 1 - +MN908947.3 10832 10865 SARS-CoV-2_36_LEFT_0 2 + +MN908947.3 11201 11232 SARS-CoV-2_36_RIGHT_0 2 - +MN908947.3 11152 11181 SARS-CoV-2_37_LEFT_0 1 + +MN908947.3 11514 11536 SARS-CoV-2_37_RIGHT_0 1 - +MN908947.3 11463 11494 SARS-CoV-2_38_LEFT_0 2 + +MN908947.3 11832 11863 SARS-CoV-2_38_RIGHT_0 2 - +MN908947.3 11785 11811 SARS-CoV-2_39_LEFT_0 1 + +MN908947.3 12161 12185 SARS-CoV-2_39_RIGHT_0 1 - +MN908947.3 12112 12137 SARS-CoV-2_40_LEFT_0 2 + +MN908947.3 12477 12510 SARS-CoV-2_40_RIGHT_0 2 - +MN908947.3 12419 12444 SARS-CoV-2_41_LEFT_0 1 + +MN908947.3 12794 12819 SARS-CoV-2_41_RIGHT_0 1 - +MN908947.3 12752 12774 SARS-CoV-2_42_LEFT_0 2 + +MN908947.3 13121 13146 SARS-CoV-2_42_RIGHT_0 2 - +MN908947.3 13075 13099 SARS-CoV-2_43_LEFT_0 1 + +MN908947.3 13458 13480 SARS-CoV-2_43_RIGHT_0 1 - +MN908947.3 13415 13435 SARS-CoV-2_44_LEFT_0 2 + +MN908947.3 13787 13815 SARS-CoV-2_44_RIGHT_0 2 - +MN908947.3 13738 13767 SARS-CoV-2_45_LEFT_0 1 + +MN908947.3 14120 14144 SARS-CoV-2_45_RIGHT_0 1 - +MN908947.3 14073 14100 SARS-CoV-2_46_LEFT_0 2 + +MN908947.3 14427 14457 SARS-CoV-2_46_RIGHT_0 2 - +MN908947.3 14375 14407 SARS-CoV-2_47_LEFT_0 1 + +MN908947.3 14745 14775 SARS-CoV-2_47_RIGHT_0 1 - +MN908947.3 14700 14725 SARS-CoV-2_48_LEFT_0 2 + +MN908947.3 15065 15095 SARS-CoV-2_48_RIGHT_0 2 - +MN908947.3 15016 15045 SARS-CoV-2_49_LEFT_0 1 + +MN908947.3 15386 15416 SARS-CoV-2_49_RIGHT_0 1 - +MN908947.3 15342 15366 SARS-CoV-2_50_LEFT_0 2 + +MN908947.3 15716 15742 SARS-CoV-2_50_RIGHT_0 2 - +MN908947.3 15659 15688 SARS-CoV-2_51_LEFT_0 1 + +MN908947.3 16028 16059 SARS-CoV-2_51_RIGHT_0 1 - +MN908947.3 15964 15998 SARS-CoV-2_52_LEFT_0 2 + +MN908947.3 16331 16364 SARS-CoV-2_52_RIGHT_0 2 - +MN908947.3 16285 16311 SARS-CoV-2_53_LEFT_0 1 + +MN908947.3 16650 16679 SARS-CoV-2_53_RIGHT_0 1 - +MN908947.3 16603 16630 SARS-CoV-2_54_LEFT_0 2 + +MN908947.3 16985 17011 SARS-CoV-2_54_RIGHT_0 2 - +MN908947.3 16929 16954 SARS-CoV-2_55_LEFT_0 1 + +MN908947.3 17301 17329 SARS-CoV-2_55_RIGHT_0 1 - +MN908947.3 17182 17212 SARS-CoV-2_56_LEFT_0 2 + +MN908947.3 17560 17582 SARS-CoV-2_56_RIGHT_0 2 - +MN908947.3 17478 17507 SARS-CoV-2_57_LEFT_0 1 + +MN908947.3 17859 17886 SARS-CoV-2_57_RIGHT_0 1 - +MN908947.3 17813 17839 SARS-CoV-2_58_LEFT_0 2 + +MN908947.3 18181 18212 SARS-CoV-2_58_RIGHT_0 2 - +MN908947.3 18121 18153 SARS-CoV-2_59_LEFT_0 1 + +MN908947.3 18504 18527 SARS-CoV-2_59_RIGHT_0 1 - +MN908947.3 18460 18484 SARS-CoV-2_60_LEFT_0 2 + +MN908947.3 18835 18860 SARS-CoV-2_60_RIGHT_0 2 - +MN908947.3 18789 18815 SARS-CoV-2_61_LEFT_0 1 + +MN908947.3 19170 19195 SARS-CoV-2_61_RIGHT_0 1 - +MN908947.3 19101 19134 SARS-CoV-2_62_LEFT_0 2 + +MN908947.3 19469 19495 SARS-CoV-2_62_RIGHT_0 2 - +MN908947.3 19415 19449 SARS-CoV-2_63_LEFT_0 1 + +MN908947.3 19770 19796 SARS-CoV-2_63_RIGHT_0 1 - +MN908947.3 19721 19750 SARS-CoV-2_64_LEFT_0 2 + +MN908947.3 20091 20121 SARS-CoV-2_64_RIGHT_0 2 - +MN908947.3 20028 20054 SARS-CoV-2_65_LEFT_0 1 + +MN908947.3 20408 20441 SARS-CoV-2_65_RIGHT_0 1 - +MN908947.3 20358 20388 SARS-CoV-2_66_LEFT_0 2 + +MN908947.3 20729 20758 SARS-CoV-2_66_RIGHT_0 2 - +MN908947.3 20680 20708 SARS-CoV-2_67_LEFT_0 1 + +MN908947.3 21047 21080 SARS-CoV-2_67_RIGHT_0 1 - +MN908947.3 20991 21018 SARS-CoV-2_68_LEFT_0 2 + +MN908947.3 21372 21402 SARS-CoV-2_68_RIGHT_0 2 - +MN908947.3 21322 21352 SARS-CoV-2_69_LEFT_0 1 + +MN908947.3 21696 21722 SARS-CoV-2_69_RIGHT_0 1 - +MN908947.3 21579 21607 SARS-CoV-2_70_LEFT_0 2 + +MN908947.3 21927 21960 SARS-CoV-2_70_RIGHT_0 2 - +MN908947.3 21866 21894 SARS-CoV-2_71_LEFT_0 1 + +MN908947.3 22238 22266 SARS-CoV-2_71_RIGHT_0 1 - +MN908947.3 22156 22189 SARS-CoV-2_72_LEFT_0 2 + +MN908947.3 22517 22547 SARS-CoV-2_72_RIGHT_0 2 - +MN908947.3 22466 22494 SARS-CoV-2_73_LEFT_0 1 + +MN908947.3 22839 22866 SARS-CoV-2_73_RIGHT_0 1 - +MN908947.3 22742 22774 SARS-CoV-2_74_LEFT_0 2 + +MN908947.3 23119 23140 SARS-CoV-2_74_RIGHT_0 2 - +MN908947.3 22922 22954 SARS-CoV-2_75_LEFT_0 1 + +MN908947.3 23296 23324 SARS-CoV-2_75_RIGHT_0 1 - +MN908947.3 23229 23258 SARS-CoV-2_76_LEFT_0 2 + +MN908947.3 23609 23631 SARS-CoV-2_76_RIGHT_0 2 - +MN908947.3 23563 23589 SARS-CoV-2_77_LEFT_0 1 + +MN908947.3 23914 23944 SARS-CoV-2_77_RIGHT_0 1 - +MN908947.3 23823 23853 SARS-CoV-2_78_LEFT_0 2 + +MN908947.3 24209 24231 SARS-CoV-2_78_RIGHT_0 2 - +MN908947.3 24160 24189 SARS-CoV-2_79_LEFT_0 1 + +MN908947.3 24535 24560 SARS-CoV-2_79_RIGHT_0 1 - +MN908947.3 24442 24468 SARS-CoV-2_80_LEFT_0 2 + +MN908947.3 24815 24839 SARS-CoV-2_80_RIGHT_0 2 - +MN908947.3 24751 24774 SARS-CoV-2_81_LEFT_0 1 + +MN908947.3 25120 25151 SARS-CoV-2_81_RIGHT_0 1 - +MN908947.3 25053 25082 SARS-CoV-2_82_LEFT_0 2 + +MN908947.3 25423 25452 SARS-CoV-2_82_RIGHT_0 2 - +MN908947.3 25372 25402 SARS-CoV-2_83_LEFT_0 1 + +MN908947.3 25744 25777 SARS-CoV-2_83_RIGHT_0 1 - +MN908947.3 25696 25724 SARS-CoV-2_84_LEFT_0 2 + +MN908947.3 26059 26086 SARS-CoV-2_84_RIGHT_0 2 - +MN908947.3 26011 26039 SARS-CoV-2_85_LEFT_0 1 + +MN908947.3 26382 26411 SARS-CoV-2_85_RIGHT_0 1 - +MN908947.3 26339 26362 SARS-CoV-2_86_LEFT_0 2 + +MN908947.3 26730 26756 SARS-CoV-2_86_RIGHT_0 2 - +MN908947.3 26639 26672 SARS-CoV-2_87_LEFT_0 1 + +MN908947.3 27011 27038 SARS-CoV-2_87_RIGHT_0 1 - +MN908947.3 26965 26989 SARS-CoV-2_88_LEFT_0 2 + +MN908947.3 27342 27372 SARS-CoV-2_88_RIGHT_0 2 - +MN908947.3 27218 27251 SARS-CoV-2_89_LEFT_0 1 + +MN908947.3 27583 27603 SARS-CoV-2_89_RIGHT_0 1 - +MN908947.3 27530 27558 SARS-CoV-2_90_LEFT_0 2 + +MN908947.3 27927 27950 SARS-CoV-2_90_RIGHT_0 2 - +MN908947.3 27832 27860 SARS-CoV-2_91_LEFT_0 1 + +MN908947.3 28209 28237 SARS-CoV-2_91_RIGHT_0 1 - +MN908947.3 28135 28166 SARS-CoV-2_92_LEFT_0 2 + +MN908947.3 28513 28539 SARS-CoV-2_92_RIGHT_0 2 - +MN908947.3 28473 28493 SARS-CoV-2_93_LEFT_0 1 + +MN908947.3 28849 28873 SARS-CoV-2_93_RIGHT_0 1 - +MN908947.3 28808 28829 SARS-CoV-2_94_LEFT_0 2 + +MN908947.3 29203 29224 SARS-CoV-2_94_RIGHT_0 2 - +MN908947.3 29159 29183 SARS-CoV-2_95_LEFT_0 1 + +MN908947.3 29538 29559 SARS-CoV-2_95_RIGHT_0 1 - +MN908947.3 29493 29515 SARS-CoV-2_96_LEFT_0 2 + +MN908947.3 29840 29873 SARS-CoV-2_96_RIGHT_0 2 - diff --git a/schemes/sars-cov-2/artic/400/v5.2.0/info.yml b/schemes/sars-cov-2/artic/400/v5.2.0/info.yml new file mode 100644 index 0000000..ed3c641 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.2.0/info.yml @@ -0,0 +1,17 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: artic +amplicon_size: 400 +version: v5.2.0 +derived_from: sars-cov-2/artic/400/v5.1.0 +aliases: +- ARTIC/V5 +developers: +- ARTIC network +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.2 +source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v5.2.0 +citations: +- https://doi.org/10.1101%2F2020.09.04.283077 +license: CC-BY-SA-4.0 +primer_checksum: primaschema:d57ec2cdb00e2583 +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/artic/400/v5.2.0/primer.bed b/schemes/sars-cov-2/artic/400/v5.2.0/primer.bed new file mode 100644 index 0000000..00b05c1 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.2.0/primer.bed @@ -0,0 +1,213 @@ +MN908947.3 23 48 SARS-CoV-2_1_LEFT_0 1 + GTAACAAACCAACCAACTTTCGATC +MN908947.3 47 78 SARS-CoV-2_1_LEFT_1 1 + CTCTTGTAGATCTGTTCTCTAAACGAACTTT +MN908947.3 398 423 SARS-CoV-2_1_RIGHT_0 1 - AAGCCACAAGTGCCATCTTTAAGAT +MN908947.3 419 447 SARS-CoV-2_1_RIGHT_1 1 - AAAACGCCTTTTTCAACTTCTACTAAGC +MN908947.3 344 366 SARS-CoV-2_2_LEFT_0 2 + TCGTACGTGGCTTTGGAGACTC +MN908947.3 707 732 SARS-CoV-2_2_RIGHT_0 2 - TCTTCATAAGGATCAGTGCCAAGCT +MN908947.3 638 661 SARS-CoV-2_3_LEFT_1 1 + AGAACGGTAATAAAGGAGCTGGT +MN908947.3 664 687 SARS-CoV-2_3_LEFT_0 1 + CATAGTTACGGCGCCGATCTAAA +MN908947.3 1018 1047 SARS-CoV-2_3_RIGHT_0 1 - TTTGCCAATTTAATTTCAAAAGGTGTCTG +MN908947.3 970 995 SARS-CoV-2_4_LEFT_0 2 + CATGAAATTGCTTGGTACACGGAAC +MN908947.3 1340 1370 SARS-CoV-2_4_RIGHT_0 2 - AAATTTTAACAACAGCATTTTGGGGTAAGT +MN908947.3 1292 1320 SARS-CoV-2_5_LEFT_0 1 + TTTGTGGCACTGAGAATTTGACTAAAGA +MN908947.3 1660 1692 SARS-CoV-2_5_RIGHT_0 1 - ATAATGGCGATCTCTTCATTAAGTTTAAAGTC +MN908947.3 1574 1596 SARS-CoV-2_6_LEFT_1 2 + GTGTTGTTGGAGAAGGTTCCGA +MN908947.3 1609 1640 SARS-CoV-2_6_LEFT_0 2 + AACCTTCTTGAAATACTCCAAAAAGAGAAAG +MN908947.3 1945 1972 SARS-CoV-2_6_RIGHT_1 2 - TATTGTTATAGCGGCCTTCTGTAAAAC +MN908947.3 1965 1998 SARS-CoV-2_6_RIGHT_0 2 - AGTGAATACTGTGAAATTCCATCTAGTATTGTT +MN908947.3 1921 1945 SARS-CoV-2_7_LEFT_0 1 + GAAACTGCTCAAAATTCTGTGCGT +MN908947.3 1951 1979 SARS-CoV-2_7_LEFT_1 1 + CAGAAGGCCGCTATAACAATACTAGATG +MN908947.3 2283 2316 SARS-CoV-2_7_RIGHT_0 1 - TTATTTACAAGCTTAAAGAATGTCTGAACACTC +MN908947.3 2324 2352 SARS-CoV-2_7_RIGHT_1 1 - CCAATAATGATAGAGTCAGCACACAAAG +MN908947.3 2229 2252 SARS-CoV-2_8_LEFT_0 2 + TGCTTGTGAAATTGTCGGTGGAC +MN908947.3 2603 2629 SARS-CoV-2_8_RIGHT_0 2 - AAGCCCGTTAATACAAACTGGTGTAC +MN908947.3 2533 2563 SARS-CoV-2_9_LEFT_0 1 + GTCTTGAAAACTGGTGATTTACAACCATTA +MN908947.3 2900 2933 SARS-CoV-2_9_RIGHT_0 1 - GTAATTCAGATACTGGTTGCAAAGTTTTTATGA +MN908947.3 2854 2880 SARS-CoV-2_10_LEFT_0 2 + CTCGGTACAGAAGTAAATGAGTTCGC +MN908947.3 3233 3254 SARS-CoV-2_10_RIGHT_0 2 - TGTCCTCACTGCCGTCTTGTT +MN908947.3 3184 3213 SARS-CoV-2_11_LEFT_0 1 + GAGCAAGAAGAAGATTGGTTAGATGATGA +MN908947.3 3560 3584 SARS-CoV-2_11_RIGHT_0 1 - CGCTTAAAACACAACTACCACCCA +MN908947.3 3510 3540 SARS-CoV-2_12_LEFT_0 2 + CATGCAAGTTGAATCTGATGATTACATAGC +MN908947.3 3883 3913 SARS-CoV-2_12_RIGHT_0 2 - AGTTATAAATGGCTTAACTTCCTCTTTAGG +MN908947.3 3791 3824 SARS-CoV-2_13_LEFT_0 1 + CTGTCTTTGATAAAAATCTCTATGACAAACTTG +MN908947.3 4147 4180 SARS-CoV-2_13_RIGHT_0 1 - CTTTTTAGTAGGTATAACCACAGCAGTTAAAAC +MN908947.3 4079 4108 SARS-CoV-2_14_LEFT_0 2 + GTGACATTGACATCACTTTCTTAAAGAAA +MN908947.3 4457 4488 SARS-CoV-2_14_RIGHT_0 2 - CCCTTATATTTACGCTGTATAGTTGAAACTA +MN908947.3 4403 4425 SARS-CoV-2_15_LEFT_0 1 + CACATGCAGAAGAAACACGCAA +MN908947.3 4776 4803 SARS-CoV-2_15_RIGHT_0 1 - TCTTTATAGGAACCAGCAAGTGAGATG +MN908947.3 4723 4756 SARS-CoV-2_16_LEFT_0 2 + AATGGTTATCTTACTTCTTCTTCTAAAACACCT +MN908947.3 5089 5119 SARS-CoV-2_16_RIGHT_0 2 - AAATGTTTTACCTTCATGTGAATTATGAGG +MN908947.3 5036 5063 SARS-CoV-2_17_LEFT_0 1 + GACAACAGTTTGGTCCAACTTATTTGG +MN908947.3 5398 5429 SARS-CoV-2_17_RIGHT_0 1 - CTGTCTTATTACAGTAGGCTAAGATAAGTGC +MN908947.3 5344 5370 SARS-CoV-2_18_LEFT_0 2 + GCTCTACAAGATGCTTATTACAGAGC +MN908947.3 5716 5744 SARS-CoV-2_18_RIGHT_0 2 - ACTCACTAGCACAAGTAAATGTACCATG +MN908947.3 5671 5696 SARS-CoV-2_19_LEFT_0 1 + CCTTTTGTTATGATGTCAGCACCAC +MN908947.3 6031 6062 SARS-CoV-2_19_RIGHT_0 1 - CACATACAAACTTAAAATTATCGAAGCTTGC +MN908947.3 5891 5923 SARS-CoV-2_20_LEFT_0 2 + CCATAAAACCAGTTACTTATAAATTGGATGGT +MN908947.3 6257 6288 SARS-CoV-2_20_RIGHT_0 2 - CAGGTATTTGGTTTATACGTGGCTTTATTAG +MN908947.3 6204 6237 SARS-CoV-2_21_LEFT_0 1 + GAAAGGAGCTAAATTGTTACATAAACCTATTGT +MN908947.3 6562 6595 SARS-CoV-2_21_RIGHT_0 1 - AGGTTTCTTAATAGTAAGACTAGAATTGTCTAC +MN908947.3 6515 6542 SARS-CoV-2_22_LEFT_0 2 + TAAAAATTACAGAAGAGGTTGGCCACA +MN908947.3 6882 6915 SARS-CoV-2_22_RIGHT_0 2 - TAATTAAATGAAGCCTCTAGACAAAATTTACCG +MN908947.3 6823 6854 SARS-CoV-2_23_LEFT_0 1 + AATTCTAGAATTAAAGCATCTATGCCGACTA +MN908947.3 7199 7229 SARS-CoV-2_23_RIGHT_0 1 - CAAAAGCAGTTAAATCCCATTTAAAAGATG +MN908947.3 7145 7179 SARS-CoV-2_24_LEFT_0 2 + GTTTAGATTCTTTAGACACCTATCCTTCTTTAGA +MN908947.3 7518 7545 SARS-CoV-2_24_RIGHT_0 2 - ACAATAGTTGTACATTCGACTCTTGTT +MN908947.3 7456 7482 SARS-CoV-2_25_LEFT_0 1 + GTGCATGTTGTAGACGGTTGTAATTC +MN908947.3 7819 7850 SARS-CoV-2_25_RIGHT_0 1 - CTCTCAGGTTGTCTAAGTTAACAAAATGAGA +MN908947.3 7768 7797 SARS-CoV-2_26_LEFT_0 2 + CATCTTTACTTTGATAAAGCTGGTCAAAA +MN908947.3 8136 8169 SARS-CoV-2_26_RIGHT_0 2 - GAAATAAAAGTAGATAAGACATTGTCTAAGGAC +MN908947.3 8085 8112 SARS-CoV-2_27_LEFT_0 1 + AAAACTCAAAACACTAGTTGCAACTGC +MN908947.3 8468 8498 SARS-CoV-2_27_RIGHT_0 1 - CACATGTCAACTTAAAAGGTAAGTTATTCT +MN908947.3 8406 8436 SARS-CoV-2_28_LEFT_0 2 + CGTTAAAGATTTCATGTCATTGTCTGAACA +MN908947.3 8781 8806 SARS-CoV-2_28_RIGHT_0 2 - ATTAGTATAACTACCACCACGCTGG +MN908947.3 8732 8761 SARS-CoV-2_29_LEFT_0 1 + CAGATACTTGTTTTGCTAACAAACATGCT +MN908947.3 9107 9129 SARS-CoV-2_29_RIGHT_0 1 - ACATAACGTGTGTCAGGGCGTA +MN908947.3 9023 9052 SARS-CoV-2_30_LEFT_0 2 + CAATTTTTAAAGATGCTTCTGGTAAGCCA +MN908947.3 9397 9423 SARS-CoV-2_30_RIGHT_0 2 - ACAATACCACCAGCTACTATAGATGC +MN908947.3 9299 9324 SARS-CoV-2_31_LEFT_1 1 + GATCTTTACCAGGAGTTTTCTGTGG +MN908947.3 9322 9355 SARS-CoV-2_31_LEFT_0 1 + GGTGTAGATGCTGTAAATTTACTTACTAATATG +MN908947.3 9673 9706 SARS-CoV-2_31_RIGHT_0 1 - ACAAATGATATAAGCAATTGTTATCCAGAAAGG +MN908947.3 9571 9604 SARS-CoV-2_32_LEFT_0 2 + GGTGTTTATTCTGTTATTTACTTGTACTTGACA +MN908947.3 9949 9971 SARS-CoV-2_32_RIGHT_0 2 - TTGCGAGATGACAACAAGCAGC +MN908947.3 9896 9929 SARS-CoV-2_33_LEFT_0 1 + ATAATAAGTACAAGTATTTTAGTGGAGCAATGG +MN908947.3 10266 10295 SARS-CoV-2_33_RIGHT_0 1 - AATGTCCAATAACCCTGAGTTGAACATTA +MN908947.3 10215 10245 SARS-CoV-2_34_LEFT_0 2 + TGAAGATTTACTCATTCGTAAGTCTAATCA +MN908947.3 10587 10615 SARS-CoV-2_34_RIGHT_0 2 - GTCAACAAAAGGTCCATAAAAGTTACCT +MN908947.3 10527 10557 SARS-CoV-2_35_LEFT_0 1 + TTTTTGTTACATGCACCATATGGAATTACC +MN908947.3 10897 10927 SARS-CoV-2_35_RIGHT_0 1 - AAATTCATCTTCTAATAAAGCACTACCCAA +MN908947.3 10832 10865 SARS-CoV-2_36_LEFT_0 2 + CCGTTTTAGATATGTGTGCTTCATTAAAAGAAT +MN908947.3 11201 11232 SARS-CoV-2_36_RIGHT_0 2 - GGCATATAGACCATATTAAAATAAGCTACAG +MN908947.3 11152 11181 SARS-CoV-2_37_LEFT_0 1 + AAACATAAGCATGCATTTCTCTGTTTGTT +MN908947.3 11514 11536 SARS-CoV-2_37_RIGHT_0 1 - ACCTCTGGCCAAAAACATGACA +MN908947.3 11463 11494 SARS-CoV-2_38_LEFT_0 2 + GTGGGCTCTTATAATCTCTGTTACTTCTAAC +MN908947.3 11832 11863 SARS-CoV-2_38_RIGHT_0 2 - CTTTACATCTGACATTTTAGACTGTACAGTG +MN908947.3 11785 11811 SARS-CoV-2_39_LEFT_0 1 + AACATTAAATTGTTGGGTGTTGGTGG +MN908947.3 12161 12185 SARS-CoV-2_39_RIGHT_0 1 - CAGAATCACCATTAGCAACAGCCT +MN908947.3 12112 12137 SARS-CoV-2_40_LEFT_0 2 + TCCCTTCCATCATATGCAGCTTTTG +MN908947.3 12477 12510 SARS-CoV-2_40_RIGHT_0 2 - TTTTTATATGTGTTATAGTCTGGTATGACAACC +MN908947.3 12419 12444 SARS-CoV-2_41_LEFT_0 1 + CAAGAGATGGTTGTGTTCCCTTGAA +MN908947.3 12794 12819 SARS-CoV-2_41_RIGHT_0 1 - AACAGTGCAAGTACAAACCTACCTC +MN908947.3 12752 12774 SARS-CoV-2_42_LEFT_0 2 + GCACTGATGACAATGCGTTAGC +MN908947.3 13121 13146 SARS-CoV-2_42_RIGHT_0 2 - CAATTAGTGATTGGTTGTCCCCCAC +MN908947.3 13075 13099 SARS-CoV-2_43_LEFT_0 1 + GCTTTTGCTGTAGATGCTGCTAAA +MN908947.3 13458 13480 SARS-CoV-2_43_RIGHT_0 1 - CACCGCAAACCCGTTTAAAAAC +MN908947.3 13415 13435 SARS-CoV-2_44_LEFT_0 2 + ATCAACTCCGCGAACCCATG +MN908947.3 13787 13815 SARS-CoV-2_44_RIGHT_0 2 - TGCCATTGTGTATTTAGTAAGACGTTGA +MN908947.3 13738 13767 SARS-CoV-2_45_LEFT_0 1 + ACTTCTTTAAGTTTAGAATAGACGGTGAC +MN908947.3 14120 14144 SARS-CoV-2_45_RIGHT_0 1 - TCTACAACAGGAACTCCACTACCT +MN908947.3 14073 14100 SARS-CoV-2_46_LEFT_0 2 + CTCAATGGTAACTGGTATGATTTCGGT +MN908947.3 14427 14457 SARS-CoV-2_46_RIGHT_0 2 - TGGAACACCATCAACAAATATTTTTCTCAC +MN908947.3 14375 14407 SARS-CoV-2_47_LEFT_0 1 + CTTTAATGTTTTATTCTCTACAGTGTTCCCAC +MN908947.3 14745 14775 SARS-CoV-2_47_RIGHT_0 1 - ATCCTGAGCAAAGAAGAAGTGTTTTAATTC +MN908947.3 14700 14725 SARS-CoV-2_48_LEFT_0 2 + GACTTTGCTGTGTCTAAGGGTTTCT +MN908947.3 15065 15095 SARS-CoV-2_48_RIGHT_0 2 - TTCTTTGCACTAATGGCATACTTAAGATTC +MN908947.3 15016 15045 SARS-CoV-2_49_LEFT_0 1 + CACTTTTCGCATATACAAAACGTAATGTC +MN908947.3 15386 15416 SARS-CoV-2_49_RIGHT_0 1 - CACTCATTAGCTAATCTATAGAAACGGTGT +MN908947.3 15342 15366 SARS-CoV-2_50_LEFT_0 2 + TCACTTGTTCTTGCTCGCAAACAT +MN908947.3 15716 15742 SARS-CoV-2_50_RIGHT_0 2 - TATTGAAACACACAACAGCATCGTCA +MN908947.3 15659 15688 SARS-CoV-2_51_LEFT_0 1 + CTTTGTGAATGAGTTTTACGCATATTTGC +MN908947.3 16028 16059 SARS-CoV-2_51_RIGHT_0 1 - AGGATGTTTAGTAAGTGGGTAAGCATCTATA +MN908947.3 15964 15998 SARS-CoV-2_52_LEFT_0 2 + GTTTTGTAGATGATATCGTAAAAACAGATGGTAC +MN908947.3 16331 16364 SARS-CoV-2_52_RIGHT_0 2 - AAGACTAATTTATGTGATGTTGATATGACATGG +MN908947.3 16285 16311 SARS-CoV-2_53_LEFT_0 1 + GTGCTTGCATACGTAGACCATTCTTA +MN908947.3 16650 16679 SARS-CoV-2_53_RIGHT_0 1 - GACAGTTTAAATGTCTCCTCAGTAGCTTT +MN908947.3 16603 16630 SARS-CoV-2_54_LEFT_0 2 + CTAACACCTGTACTGAAAGACTCAAGC +MN908947.3 16624 16647 SARS-CoV-2_54_LEFT_1 2 + TCAAGCTTTTTGCAGCAGAAACG +MN908947.3 16985 17011 SARS-CoV-2_54_RIGHT_0 2 - AGATATTGAGTGTTGGGTATAAGCCA +MN908947.3 17004 17033 SARS-CoV-2_54_RIGHT_1 2 - ACATTGCTAGAAAACTCATCTGAGATATT +MN908947.3 16929 16954 SARS-CoV-2_55_LEFT_0 1 + GTAATGCCATTAAGTGCACCTACAC +MN908947.3 16962 16994 SARS-CoV-2_55_LEFT_1 1 + CAAGAGCACTATGTTAGAATTACTGGCTTATA +MN908947.3 17301 17329 SARS-CoV-2_55_RIGHT_0 1 - CAGGCAATGCATTTACAGTACAAAAGAC +MN908947.3 17333 17362 SARS-CoV-2_55_RIGHT_1 1 - TTTCATCAAAGACAACTATATCTGCTGTC +MN908947.3 17182 17212 SARS-CoV-2_56_LEFT_0 2 + CACTATGTGAGAAGGCATTAAAATATTTGC +MN908947.3 17560 17582 SARS-CoV-2_56_RIGHT_0 2 - ACAATTTCAGCAGGACAACGCC +MN908947.3 17478 17507 SARS-CoV-2_57_LEFT_0 1 + GGCACACTAGAACCAGAATATTTCAATTC +MN908947.3 17859 17886 SARS-CoV-2_57_RIGHT_0 1 - AGTGGTTTGAGTGAATATGACATAGTC +MN908947.3 17813 17839 SARS-CoV-2_58_LEFT_0 2 + GGGACTACCAACTCAAACTGTTGATT +MN908947.3 18181 18212 SARS-CoV-2_58_RIGHT_0 2 - ATCATAGAGATGAGTCTTCTATAGGTCATGT +MN908947.3 18121 18153 SARS-CoV-2_59_LEFT_0 1 + GTGTTGACACTAAATTCAAAACTGAAGGTTTA +MN908947.3 18504 18527 SARS-CoV-2_59_RIGHT_0 1 - CGCACTACATTCCAAGGAAGTCC +MN908947.3 18460 18484 SARS-CoV-2_60_LEFT_0 2 + CGCCTGGAGATCAATTTAAACACC +MN908947.3 18835 18860 SARS-CoV-2_60_RIGHT_0 2 - GCATCACAACTAGCTACATGTGCAT +MN908947.3 18789 18815 SARS-CoV-2_61_LEFT_0 1 + GGTAACCTACAAAGCAACCATGATCT +MN908947.3 19170 19195 SARS-CoV-2_61_RIGHT_0 1 - TCCAAAATAGGCATACACCATCTGT +MN908947.3 19101 19134 SARS-CoV-2_62_LEFT_0 2 + CCTTGTAGTGACAAAGCTTATAAAATAGAAGAA +MN908947.3 19469 19495 SARS-CoV-2_62_RIGHT_0 2 - GTCTACAGACAGCACCACCTAAATTG +MN908947.3 19415 19449 SARS-CoV-2_63_LEFT_0 1 + AGTGTCAGATATAGATTATGTACCACTAAAGTCT +MN908947.3 19770 19796 SARS-CoV-2_63_RIGHT_0 1 - GCCCAAAGCTCAAATGCTACATTAAC +MN908947.3 19721 19750 SARS-CoV-2_64_LEFT_0 2 + AGTTGATGGTGTTGATGTAGAATTGTTTG +MN908947.3 20091 20121 SARS-CoV-2_64_RIGHT_0 2 - TAATGTGACTCCATTAAGACTAGCTTGTTT +MN908947.3 20028 20054 SARS-CoV-2_65_LEFT_0 1 + GCCCGTAATGGTGTTCTTATTACAGA +MN908947.3 20408 20441 SARS-CoV-2_65_RIGHT_0 1 - GTACTGTCCATAGGAATAAAATCTTCTAATTCA +MN908947.3 20358 20388 SARS-CoV-2_66_LEFT_0 2 + GGTTTACATCTACTGATTGGACTAGCTAAA +MN908947.3 20729 20758 SARS-CoV-2_66_RIGHT_0 2 - CACTATCACCATAATTTTGAAGGTCACAC +MN908947.3 20650 20676 SARS-CoV-2_67_LEFT_1 1 + AATTACAATCTAGTCAAGCGTGGCAA +MN908947.3 20680 20708 SARS-CoV-2_67_LEFT_0 1 + GTGTTGCTATGCCTAATCTTTACAAAAT +MN908947.3 21018 21051 SARS-CoV-2_67_RIGHT_1 1 - CATATCACTAATAATGAGATCCCATTTATTAGC +MN908947.3 21047 21080 SARS-CoV-2_67_RIGHT_0 1 - TTTGTAACATTTTTAGTCTTAGGGTCGTACATA +MN908947.3 20991 21018 SARS-CoV-2_68_LEFT_0 2 + ATTGGTGATTGTGCAACTGTACATACA +MN908947.3 21372 21402 SARS-CoV-2_68_RIGHT_0 2 - ACTCATGTCAAATAAAGAATAGGAAGACAA +MN908947.3 21322 21352 SARS-CoV-2_69_LEFT_0 1 + ATGTCATGCATGCAAATTACATATTTTGGA +MN908947.3 21696 21722 SARS-CoV-2_69_RIGHT_0 1 - AGTCCTGAGTTGAATGTAAAACTGAG +MN908947.3 21579 21607 SARS-CoV-2_70_LEFT_0 2 + TTTATTGCCACTAGTCTCTAGTCAGTGT +MN908947.3 21927 21960 SARS-CoV-2_70_RIGHT_0 2 - AATTCACAGACTTTAATAACAACATTAGTAGCG +MN908947.3 21866 21894 SARS-CoV-2_71_LEFT_0 1 + GAGGCTGGATTTTTGGTACTACTTTAGA +MN908947.3 22238 22266 SARS-CoV-2_71_RIGHT_0 1 - ATGTTAATACCTATTGGCAAATCTACCA +MN908947.3 22156 22189 SARS-CoV-2_72_LEFT_0 2 + GGTTATTTTAAAATATATTCTAAGCACACGCCT +MN908947.3 22517 22547 SARS-CoV-2_72_RIGHT_0 2 - ATCTAACAATAGATTCTGTTGGTTGGACTC +MN908947.3 22466 22494 SARS-CoV-2_73_LEFT_0 1 + CGTTGAAATCCTTCACTGTAGAAAAAGG +MN908947.3 22839 22866 SARS-CoV-2_73_RIGHT_0 1 - GCTATAACGCAGCCTGTAAAATCATCT +MN908947.3 22742 22774 SARS-CoV-2_74_LEFT_0 2 + ATGTCTATGCAGATTCATTTGTAATTAGAGGT +MN908947.3 23119 23140 SARS-CoV-2_74_RIGHT_0 2 - TCCACAAACAGTTGCTGGTGC +MN908947.3 22922 22954 SARS-CoV-2_75_LEFT_0 1 + GATTGTTTAGGAAGTCTAATCTCAAACCTTTT +MN908947.3 23078 23109 SARS-CoV-2_75_LEFT_1 1 + AACCATACAGAGTAGTAGTACTTTCTTTTGA +MN908947.3 23296 23324 SARS-CoV-2_75_RIGHT_0 1 - TAATGTCAAGAATCTCAAGTGTCTGTGG +MN908947.3 23452 23478 SARS-CoV-2_75_RIGHT_1 1 - CCTGTAGAATAAACACGCCAAGTAGG +MN908947.3 23229 23258 SARS-CoV-2_76_LEFT_0 2 + CAAAAAGTTTCTGCCTTTCCAACAATTTG +MN908947.3 23609 23631 SARS-CoV-2_76_RIGHT_0 2 - TGACTAGCTACACTACGTGCCC +MN908947.3 23563 23589 SARS-CoV-2_77_LEFT_0 1 + GCAGGTATATGCGCTAGTTATCAGAC +MN908947.3 23914 23944 SARS-CoV-2_77_RIGHT_0 1 - AATTGGTGGTGTTTTGTAAATTTGTTTGAC +MN908947.3 23823 23853 SARS-CoV-2_78_LEFT_0 2 + GCAATATGGCAGTTTTTGTACACAATTAAA +MN908947.3 24209 24231 SARS-CoV-2_78_RIGHT_0 2 - GCACCAAAGGTCCAACCAGAAG +MN908947.3 24160 24189 SARS-CoV-2_79_LEFT_0 1 + GATGAAATGATTGCTCAATACACTTCTGC +MN908947.3 24535 24560 SARS-CoV-2_79_RIGHT_0 1 - TGCCTGTGATCAACCTATCAATTTG +MN908947.3 24442 24468 SARS-CoV-2_80_LEFT_0 2 + ACGCTTGTTAAACAACTTAGCTCCAA +MN908947.3 24815 24839 SARS-CoV-2_80_RIGHT_0 2 - CTTCACGAGGAAAGTGTGCTTTTC +MN908947.3 24751 24774 SARS-CoV-2_81_LEFT_0 1 + CATGTGACTTATGTCCCTGCACA +MN908947.3 25120 25151 SARS-CoV-2_81_RIGHT_0 1 - GAGATTCATTTAAATTCTTGGCAACCTCATT +MN908947.3 25053 25082 SARS-CoV-2_82_LEFT_0 2 + TGATTTAGGTGACATCTCTGGCATTAATG +MN908947.3 25423 25452 SARS-CoV-2_82_RIGHT_0 2 - GATTTCACCTTGCTTCAAAGTTACAGTTC +MN908947.3 25372 25402 SARS-CoV-2_83_LEFT_0 1 + CATTACACATAAACGAACTTATGGATTTGT +MN908947.3 25744 25777 SARS-CoV-2_83_RIGHT_0 1 - GCCAAAGCCTCATTATTATTCTTACAAAGTTTA +MN908947.3 25696 25724 SARS-CoV-2_84_LEFT_0 2 + AAGCCCCTTTTCTCTATCTTTATGCTTT +MN908947.3 25718 25743 SARS-CoV-2_84_LEFT_1 2 + TGCTTTAGTCTACTTCTTGCAGAGT +MN908947.3 26059 26086 SARS-CoV-2_84_RIGHT_0 2 - TGAAGAAGGTAACATGTTCAACACCAG +MN908947.3 26107 26131 SARS-CoV-2_84_RIGHT_1 2 - GAATTTGGACATGTTCTTCAGGCT +MN908947.3 26011 26039 SARS-CoV-2_85_LEFT_0 1 + TCACTTCAGACTATTACCAGCTGTACTC +MN908947.3 26382 26411 SARS-CoV-2_85_RIGHT_0 1 - AAAGAAGGTTTTACAAGACTCACGTTAAC +MN908947.3 26339 26362 SARS-CoV-2_86_LEFT_0 2 + CATCCTTACTGCGCTTCGATTGT +MN908947.3 26730 26756 SARS-CoV-2_86_RIGHT_0 2 - ACCGGTGATCCAATTTATTCTGTAAA +MN908947.3 26593 26621 SARS-CoV-2_87_LEFT_1 1 + AGGTTTCCTATTCCTTACATGGATTTGT +MN908947.3 26639 26672 SARS-CoV-2_87_LEFT_0 1 + GCCAACAGGAATAGGTTTTTGTATATAATTAAG +MN908947.3 26989 27009 SARS-CoV-2_87_RIGHT_1 1 - CCTTGATGTCACAGCGTCCT +MN908947.3 27011 27038 SARS-CoV-2_87_RIGHT_0 1 - TGTAGCAACAGTGATTTCTTTAGGCAG +MN908947.3 26965 26989 SARS-CoV-2_88_LEFT_0 2 + TCTTCGTATTGCTGGACACCATCT +MN908947.3 27342 27372 SARS-CoV-2_88_RIGHT_0 2 - TGGTTGCTCTTCATCTAATTGAGAATATTT +MN908947.3 27218 27251 SARS-CoV-2_89_LEFT_0 1 + CTTTCAGGTTACTATAGCAGAGATATTACTAAT +MN908947.3 27583 27603 SARS-CoV-2_89_RIGHT_0 1 - GCCGTCAGGACAAGCAAAAG +MN908947.3 27530 27558 SARS-CoV-2_90_LEFT_0 2 + TCATCCTCTAGCTGATAACAAATTTGCA +MN908947.3 27927 27950 SARS-CoV-2_90_RIGHT_0 2 - TTCTTGGTGAAATGCAGCTACAG +MN908947.3 27832 27860 SARS-CoV-2_91_LEFT_0 1 + TATCTTTTGGTTCTCACTTGAACTGCAA +MN908947.3 28209 28237 SARS-CoV-2_91_RIGHT_0 1 - CGAACGTCATGATACTCTAAAAAGTCTT +MN908947.3 28135 28166 SARS-CoV-2_92_LEFT_0 2 + TTCCTGTTTACCTTTTACAATTAATTGCCAG +MN908947.3 28513 28539 SARS-CoV-2_92_RIGHT_0 2 - CTTCGGTAGTAGCCAATTTGGTCATC +MN908947.3 28473 28493 SARS-CoV-2_93_LEFT_0 1 + TCGAGGACAAGGCGTTCCAA +MN908947.3 28849 28873 SARS-CoV-2_93_RIGHT_0 1 - GCCTGGAGTTGAATTTCTTGAACT +MN908947.3 28808 28829 SARS-CoV-2_94_LEFT_0 2 + GCAGTCAAGCCTCTTCTCGTT +MN908947.3 29203 29224 SARS-CoV-2_94_RIGHT_0 2 - CATTCCGAAGAACGCTGAAGC +MN908947.3 29159 29183 SARS-CoV-2_95_LEFT_0 1 + CTGATTACAAACATTGGCCGCAAA +MN908947.3 29538 29559 SARS-CoV-2_95_RIGHT_0 1 - ATCTGCCTTGTGTGGTCTGCA +MN908947.3 29462 29486 SARS-CoV-2_96_LEFT_1 2 + CTGCAGATTTGGATGATTTCTCCA +MN908947.3 29493 29515 SARS-CoV-2_96_LEFT_0 2 + GCAACAATCCATGAGCAGTGCT +MN908947.3 29840 29873 SARS-CoV-2_96_RIGHT_0 2 - TTTGTCATTCTCCTAAGAAGCTATTAAAATCAC diff --git a/schemes/sars-cov-2/artic/400/v5.2.0/primer.svg b/schemes/sars-cov-2/artic/400/v5.2.0/primer.svg new file mode 100644 index 0000000..8fb3832 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.2.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/artic/v5.1.0_400/reference.fasta b/schemes/sars-cov-2/artic/400/v5.2.0/reference.fasta similarity index 100% rename from sars-cov-2/artic/v5.1.0_400/reference.fasta rename to schemes/sars-cov-2/artic/400/v5.2.0/reference.fasta diff --git a/schemes/sars-cov-2/artic/400/v5.2.0/scheme.bed b/schemes/sars-cov-2/artic/400/v5.2.0/scheme.bed new file mode 100644 index 0000000..a031e15 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.2.0/scheme.bed @@ -0,0 +1,213 @@ +MN908947.3 23 48 SARS-CoV-2_1_LEFT_0 1 + +MN908947.3 47 78 SARS-CoV-2_1_LEFT_1 1 + +MN908947.3 398 423 SARS-CoV-2_1_RIGHT_0 1 - +MN908947.3 419 447 SARS-CoV-2_1_RIGHT_1 1 - +MN908947.3 344 366 SARS-CoV-2_2_LEFT_0 2 + +MN908947.3 707 732 SARS-CoV-2_2_RIGHT_0 2 - +MN908947.3 638 661 SARS-CoV-2_3_LEFT_1 1 + +MN908947.3 664 687 SARS-CoV-2_3_LEFT_0 1 + +MN908947.3 1018 1047 SARS-CoV-2_3_RIGHT_0 1 - +MN908947.3 970 995 SARS-CoV-2_4_LEFT_0 2 + +MN908947.3 1340 1370 SARS-CoV-2_4_RIGHT_0 2 - +MN908947.3 1292 1320 SARS-CoV-2_5_LEFT_0 1 + +MN908947.3 1660 1692 SARS-CoV-2_5_RIGHT_0 1 - +MN908947.3 1574 1596 SARS-CoV-2_6_LEFT_1 2 + +MN908947.3 1609 1640 SARS-CoV-2_6_LEFT_0 2 + +MN908947.3 1945 1972 SARS-CoV-2_6_RIGHT_1 2 - +MN908947.3 1965 1998 SARS-CoV-2_6_RIGHT_0 2 - +MN908947.3 1921 1945 SARS-CoV-2_7_LEFT_0 1 + +MN908947.3 1951 1979 SARS-CoV-2_7_LEFT_1 1 + +MN908947.3 2283 2316 SARS-CoV-2_7_RIGHT_0 1 - +MN908947.3 2324 2352 SARS-CoV-2_7_RIGHT_1 1 - +MN908947.3 2229 2252 SARS-CoV-2_8_LEFT_0 2 + +MN908947.3 2603 2629 SARS-CoV-2_8_RIGHT_0 2 - +MN908947.3 2533 2563 SARS-CoV-2_9_LEFT_0 1 + +MN908947.3 2900 2933 SARS-CoV-2_9_RIGHT_0 1 - +MN908947.3 2854 2880 SARS-CoV-2_10_LEFT_0 2 + +MN908947.3 3233 3254 SARS-CoV-2_10_RIGHT_0 2 - +MN908947.3 3184 3213 SARS-CoV-2_11_LEFT_0 1 + +MN908947.3 3560 3584 SARS-CoV-2_11_RIGHT_0 1 - +MN908947.3 3510 3540 SARS-CoV-2_12_LEFT_0 2 + +MN908947.3 3883 3913 SARS-CoV-2_12_RIGHT_0 2 - +MN908947.3 3791 3824 SARS-CoV-2_13_LEFT_0 1 + +MN908947.3 4147 4180 SARS-CoV-2_13_RIGHT_0 1 - +MN908947.3 4079 4108 SARS-CoV-2_14_LEFT_0 2 + +MN908947.3 4457 4488 SARS-CoV-2_14_RIGHT_0 2 - +MN908947.3 4403 4425 SARS-CoV-2_15_LEFT_0 1 + +MN908947.3 4776 4803 SARS-CoV-2_15_RIGHT_0 1 - +MN908947.3 4723 4756 SARS-CoV-2_16_LEFT_0 2 + +MN908947.3 5089 5119 SARS-CoV-2_16_RIGHT_0 2 - +MN908947.3 5036 5063 SARS-CoV-2_17_LEFT_0 1 + +MN908947.3 5398 5429 SARS-CoV-2_17_RIGHT_0 1 - +MN908947.3 5344 5370 SARS-CoV-2_18_LEFT_0 2 + +MN908947.3 5716 5744 SARS-CoV-2_18_RIGHT_0 2 - +MN908947.3 5671 5696 SARS-CoV-2_19_LEFT_0 1 + +MN908947.3 6031 6062 SARS-CoV-2_19_RIGHT_0 1 - +MN908947.3 5891 5923 SARS-CoV-2_20_LEFT_0 2 + +MN908947.3 6257 6288 SARS-CoV-2_20_RIGHT_0 2 - +MN908947.3 6204 6237 SARS-CoV-2_21_LEFT_0 1 + +MN908947.3 6562 6595 SARS-CoV-2_21_RIGHT_0 1 - +MN908947.3 6515 6542 SARS-CoV-2_22_LEFT_0 2 + +MN908947.3 6882 6915 SARS-CoV-2_22_RIGHT_0 2 - +MN908947.3 6823 6854 SARS-CoV-2_23_LEFT_0 1 + +MN908947.3 7199 7229 SARS-CoV-2_23_RIGHT_0 1 - +MN908947.3 7145 7179 SARS-CoV-2_24_LEFT_0 2 + +MN908947.3 7518 7545 SARS-CoV-2_24_RIGHT_0 2 - +MN908947.3 7456 7482 SARS-CoV-2_25_LEFT_0 1 + +MN908947.3 7819 7850 SARS-CoV-2_25_RIGHT_0 1 - +MN908947.3 7768 7797 SARS-CoV-2_26_LEFT_0 2 + +MN908947.3 8136 8169 SARS-CoV-2_26_RIGHT_0 2 - +MN908947.3 8085 8112 SARS-CoV-2_27_LEFT_0 1 + +MN908947.3 8468 8498 SARS-CoV-2_27_RIGHT_0 1 - +MN908947.3 8406 8436 SARS-CoV-2_28_LEFT_0 2 + +MN908947.3 8781 8806 SARS-CoV-2_28_RIGHT_0 2 - +MN908947.3 8732 8761 SARS-CoV-2_29_LEFT_0 1 + +MN908947.3 9107 9129 SARS-CoV-2_29_RIGHT_0 1 - +MN908947.3 9023 9052 SARS-CoV-2_30_LEFT_0 2 + +MN908947.3 9397 9423 SARS-CoV-2_30_RIGHT_0 2 - +MN908947.3 9299 9324 SARS-CoV-2_31_LEFT_1 1 + +MN908947.3 9322 9355 SARS-CoV-2_31_LEFT_0 1 + +MN908947.3 9673 9706 SARS-CoV-2_31_RIGHT_0 1 - +MN908947.3 9571 9604 SARS-CoV-2_32_LEFT_0 2 + +MN908947.3 9949 9971 SARS-CoV-2_32_RIGHT_0 2 - +MN908947.3 9896 9929 SARS-CoV-2_33_LEFT_0 1 + +MN908947.3 10266 10295 SARS-CoV-2_33_RIGHT_0 1 - +MN908947.3 10215 10245 SARS-CoV-2_34_LEFT_0 2 + +MN908947.3 10587 10615 SARS-CoV-2_34_RIGHT_0 2 - +MN908947.3 10527 10557 SARS-CoV-2_35_LEFT_0 1 + +MN908947.3 10897 10927 SARS-CoV-2_35_RIGHT_0 1 - +MN908947.3 10832 10865 SARS-CoV-2_36_LEFT_0 2 + +MN908947.3 11201 11232 SARS-CoV-2_36_RIGHT_0 2 - +MN908947.3 11152 11181 SARS-CoV-2_37_LEFT_0 1 + +MN908947.3 11514 11536 SARS-CoV-2_37_RIGHT_0 1 - +MN908947.3 11463 11494 SARS-CoV-2_38_LEFT_0 2 + +MN908947.3 11832 11863 SARS-CoV-2_38_RIGHT_0 2 - +MN908947.3 11785 11811 SARS-CoV-2_39_LEFT_0 1 + +MN908947.3 12161 12185 SARS-CoV-2_39_RIGHT_0 1 - +MN908947.3 12112 12137 SARS-CoV-2_40_LEFT_0 2 + +MN908947.3 12477 12510 SARS-CoV-2_40_RIGHT_0 2 - +MN908947.3 12419 12444 SARS-CoV-2_41_LEFT_0 1 + +MN908947.3 12794 12819 SARS-CoV-2_41_RIGHT_0 1 - +MN908947.3 12752 12774 SARS-CoV-2_42_LEFT_0 2 + +MN908947.3 13121 13146 SARS-CoV-2_42_RIGHT_0 2 - +MN908947.3 13075 13099 SARS-CoV-2_43_LEFT_0 1 + +MN908947.3 13458 13480 SARS-CoV-2_43_RIGHT_0 1 - +MN908947.3 13415 13435 SARS-CoV-2_44_LEFT_0 2 + +MN908947.3 13787 13815 SARS-CoV-2_44_RIGHT_0 2 - +MN908947.3 13738 13767 SARS-CoV-2_45_LEFT_0 1 + +MN908947.3 14120 14144 SARS-CoV-2_45_RIGHT_0 1 - +MN908947.3 14073 14100 SARS-CoV-2_46_LEFT_0 2 + +MN908947.3 14427 14457 SARS-CoV-2_46_RIGHT_0 2 - +MN908947.3 14375 14407 SARS-CoV-2_47_LEFT_0 1 + +MN908947.3 14745 14775 SARS-CoV-2_47_RIGHT_0 1 - +MN908947.3 14700 14725 SARS-CoV-2_48_LEFT_0 2 + +MN908947.3 15065 15095 SARS-CoV-2_48_RIGHT_0 2 - +MN908947.3 15016 15045 SARS-CoV-2_49_LEFT_0 1 + +MN908947.3 15386 15416 SARS-CoV-2_49_RIGHT_0 1 - +MN908947.3 15342 15366 SARS-CoV-2_50_LEFT_0 2 + +MN908947.3 15716 15742 SARS-CoV-2_50_RIGHT_0 2 - +MN908947.3 15659 15688 SARS-CoV-2_51_LEFT_0 1 + +MN908947.3 16028 16059 SARS-CoV-2_51_RIGHT_0 1 - +MN908947.3 15964 15998 SARS-CoV-2_52_LEFT_0 2 + +MN908947.3 16331 16364 SARS-CoV-2_52_RIGHT_0 2 - +MN908947.3 16285 16311 SARS-CoV-2_53_LEFT_0 1 + +MN908947.3 16650 16679 SARS-CoV-2_53_RIGHT_0 1 - +MN908947.3 16603 16630 SARS-CoV-2_54_LEFT_0 2 + +MN908947.3 16624 16647 SARS-CoV-2_54_LEFT_1 2 + +MN908947.3 16985 17011 SARS-CoV-2_54_RIGHT_0 2 - +MN908947.3 17004 17033 SARS-CoV-2_54_RIGHT_1 2 - +MN908947.3 16929 16954 SARS-CoV-2_55_LEFT_0 1 + +MN908947.3 16962 16994 SARS-CoV-2_55_LEFT_1 1 + +MN908947.3 17301 17329 SARS-CoV-2_55_RIGHT_0 1 - +MN908947.3 17333 17362 SARS-CoV-2_55_RIGHT_1 1 - +MN908947.3 17182 17212 SARS-CoV-2_56_LEFT_0 2 + +MN908947.3 17560 17582 SARS-CoV-2_56_RIGHT_0 2 - +MN908947.3 17478 17507 SARS-CoV-2_57_LEFT_0 1 + +MN908947.3 17859 17886 SARS-CoV-2_57_RIGHT_0 1 - +MN908947.3 17813 17839 SARS-CoV-2_58_LEFT_0 2 + +MN908947.3 18181 18212 SARS-CoV-2_58_RIGHT_0 2 - +MN908947.3 18121 18153 SARS-CoV-2_59_LEFT_0 1 + +MN908947.3 18504 18527 SARS-CoV-2_59_RIGHT_0 1 - +MN908947.3 18460 18484 SARS-CoV-2_60_LEFT_0 2 + +MN908947.3 18835 18860 SARS-CoV-2_60_RIGHT_0 2 - +MN908947.3 18789 18815 SARS-CoV-2_61_LEFT_0 1 + +MN908947.3 19170 19195 SARS-CoV-2_61_RIGHT_0 1 - +MN908947.3 19101 19134 SARS-CoV-2_62_LEFT_0 2 + +MN908947.3 19469 19495 SARS-CoV-2_62_RIGHT_0 2 - +MN908947.3 19415 19449 SARS-CoV-2_63_LEFT_0 1 + +MN908947.3 19770 19796 SARS-CoV-2_63_RIGHT_0 1 - +MN908947.3 19721 19750 SARS-CoV-2_64_LEFT_0 2 + +MN908947.3 20091 20121 SARS-CoV-2_64_RIGHT_0 2 - +MN908947.3 20028 20054 SARS-CoV-2_65_LEFT_0 1 + +MN908947.3 20408 20441 SARS-CoV-2_65_RIGHT_0 1 - +MN908947.3 20358 20388 SARS-CoV-2_66_LEFT_0 2 + +MN908947.3 20729 20758 SARS-CoV-2_66_RIGHT_0 2 - +MN908947.3 20650 20676 SARS-CoV-2_67_LEFT_1 1 + +MN908947.3 20680 20708 SARS-CoV-2_67_LEFT_0 1 + +MN908947.3 21018 21051 SARS-CoV-2_67_RIGHT_1 1 - +MN908947.3 21047 21080 SARS-CoV-2_67_RIGHT_0 1 - +MN908947.3 20991 21018 SARS-CoV-2_68_LEFT_0 2 + +MN908947.3 21372 21402 SARS-CoV-2_68_RIGHT_0 2 - +MN908947.3 21322 21352 SARS-CoV-2_69_LEFT_0 1 + +MN908947.3 21696 21722 SARS-CoV-2_69_RIGHT_0 1 - +MN908947.3 21579 21607 SARS-CoV-2_70_LEFT_0 2 + +MN908947.3 21927 21960 SARS-CoV-2_70_RIGHT_0 2 - +MN908947.3 21866 21894 SARS-CoV-2_71_LEFT_0 1 + +MN908947.3 22238 22266 SARS-CoV-2_71_RIGHT_0 1 - +MN908947.3 22156 22189 SARS-CoV-2_72_LEFT_0 2 + +MN908947.3 22517 22547 SARS-CoV-2_72_RIGHT_0 2 - +MN908947.3 22466 22494 SARS-CoV-2_73_LEFT_0 1 + +MN908947.3 22839 22866 SARS-CoV-2_73_RIGHT_0 1 - +MN908947.3 22742 22774 SARS-CoV-2_74_LEFT_0 2 + +MN908947.3 23119 23140 SARS-CoV-2_74_RIGHT_0 2 - +MN908947.3 22922 22954 SARS-CoV-2_75_LEFT_0 1 + +MN908947.3 23078 23109 SARS-CoV-2_75_LEFT_1 1 + +MN908947.3 23296 23324 SARS-CoV-2_75_RIGHT_0 1 - +MN908947.3 23452 23478 SARS-CoV-2_75_RIGHT_1 1 - +MN908947.3 23229 23258 SARS-CoV-2_76_LEFT_0 2 + +MN908947.3 23609 23631 SARS-CoV-2_76_RIGHT_0 2 - +MN908947.3 23563 23589 SARS-CoV-2_77_LEFT_0 1 + +MN908947.3 23914 23944 SARS-CoV-2_77_RIGHT_0 1 - +MN908947.3 23823 23853 SARS-CoV-2_78_LEFT_0 2 + +MN908947.3 24209 24231 SARS-CoV-2_78_RIGHT_0 2 - +MN908947.3 24160 24189 SARS-CoV-2_79_LEFT_0 1 + +MN908947.3 24535 24560 SARS-CoV-2_79_RIGHT_0 1 - +MN908947.3 24442 24468 SARS-CoV-2_80_LEFT_0 2 + +MN908947.3 24815 24839 SARS-CoV-2_80_RIGHT_0 2 - +MN908947.3 24751 24774 SARS-CoV-2_81_LEFT_0 1 + +MN908947.3 25120 25151 SARS-CoV-2_81_RIGHT_0 1 - +MN908947.3 25053 25082 SARS-CoV-2_82_LEFT_0 2 + +MN908947.3 25423 25452 SARS-CoV-2_82_RIGHT_0 2 - +MN908947.3 25372 25402 SARS-CoV-2_83_LEFT_0 1 + +MN908947.3 25744 25777 SARS-CoV-2_83_RIGHT_0 1 - +MN908947.3 25696 25724 SARS-CoV-2_84_LEFT_0 2 + +MN908947.3 25718 25743 SARS-CoV-2_84_LEFT_1 2 + +MN908947.3 26059 26086 SARS-CoV-2_84_RIGHT_0 2 - +MN908947.3 26107 26131 SARS-CoV-2_84_RIGHT_1 2 - +MN908947.3 26011 26039 SARS-CoV-2_85_LEFT_0 1 + +MN908947.3 26382 26411 SARS-CoV-2_85_RIGHT_0 1 - +MN908947.3 26339 26362 SARS-CoV-2_86_LEFT_0 2 + +MN908947.3 26730 26756 SARS-CoV-2_86_RIGHT_0 2 - +MN908947.3 26593 26621 SARS-CoV-2_87_LEFT_1 1 + +MN908947.3 26639 26672 SARS-CoV-2_87_LEFT_0 1 + +MN908947.3 26989 27009 SARS-CoV-2_87_RIGHT_1 1 - +MN908947.3 27011 27038 SARS-CoV-2_87_RIGHT_0 1 - +MN908947.3 26965 26989 SARS-CoV-2_88_LEFT_0 2 + +MN908947.3 27342 27372 SARS-CoV-2_88_RIGHT_0 2 - +MN908947.3 27218 27251 SARS-CoV-2_89_LEFT_0 1 + +MN908947.3 27583 27603 SARS-CoV-2_89_RIGHT_0 1 - +MN908947.3 27530 27558 SARS-CoV-2_90_LEFT_0 2 + +MN908947.3 27927 27950 SARS-CoV-2_90_RIGHT_0 2 - +MN908947.3 27832 27860 SARS-CoV-2_91_LEFT_0 1 + +MN908947.3 28209 28237 SARS-CoV-2_91_RIGHT_0 1 - +MN908947.3 28135 28166 SARS-CoV-2_92_LEFT_0 2 + +MN908947.3 28513 28539 SARS-CoV-2_92_RIGHT_0 2 - +MN908947.3 28473 28493 SARS-CoV-2_93_LEFT_0 1 + +MN908947.3 28849 28873 SARS-CoV-2_93_RIGHT_0 1 - +MN908947.3 28808 28829 SARS-CoV-2_94_LEFT_0 2 + +MN908947.3 29203 29224 SARS-CoV-2_94_RIGHT_0 2 - +MN908947.3 29159 29183 SARS-CoV-2_95_LEFT_0 1 + +MN908947.3 29538 29559 SARS-CoV-2_95_RIGHT_0 1 - +MN908947.3 29462 29486 SARS-CoV-2_96_LEFT_1 2 + +MN908947.3 29493 29515 SARS-CoV-2_96_LEFT_0 2 + +MN908947.3 29840 29873 SARS-CoV-2_96_RIGHT_0 2 - diff --git a/schemes/sars-cov-2/artic/400/v5.3.2/info.yml b/schemes/sars-cov-2/artic/400/v5.3.2/info.yml new file mode 100644 index 0000000..65bd354 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.3.2/info.yml @@ -0,0 +1,17 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: artic +amplicon_size: 400 +version: v5.3.2 +derived_from: sars-cov-2/artic/400/v5.2.0 +aliases: +- ARTIC/V5.3.2 +developers: +- ARTIC network +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.3.2 +source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v5.3.2 +citations: +- https://doi.org/10.1101%2F2020.09.04.283077 +license: CC-BY-SA-4.0 +primer_checksum: primaschema:5c6856dfe0e2537d +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/artic/400/v5.3.2/primer.bed b/schemes/sars-cov-2/artic/400/v5.3.2/primer.bed new file mode 100644 index 0000000..de0d346 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.3.2/primer.bed @@ -0,0 +1,193 @@ +MN908947.3 47 78 SARS-CoV-2_1_LEFT_1 1 + CTCTTGTAGATCTGTTCTCTAAACGAACTTT +MN908947.3 419 447 SARS-CoV-2_1_RIGHT_1 1 - AAAACGCCTTTTTCAACTTCTACTAAGC +MN908947.3 344 366 SARS-CoV-2_2_LEFT_0 2 + TCGTACGTGGCTTTGGAGACTC +MN908947.3 707 732 SARS-CoV-2_2_RIGHT_0 2 - TCTTCATAAGGATCAGTGCCAAGCT +MN908947.3 638 661 SARS-CoV-2_3_LEFT_1 1 + AGAACGGTAATAAAGGAGCTGGT +MN908947.3 1018 1047 SARS-CoV-2_3_RIGHT_0 1 - TTTGCCAATTTAATTTCAAAAGGTGTCTG +MN908947.3 970 995 SARS-CoV-2_4_LEFT_0 2 + CATGAAATTGCTTGGTACACGGAAC +MN908947.3 1340 1370 SARS-CoV-2_4_RIGHT_0 2 - AAATTTTAACAACAGCATTTTGGGGTAAGT +MN908947.3 1292 1320 SARS-CoV-2_5_LEFT_0 1 + TTTGTGGCACTGAGAATTTGACTAAAGA +MN908947.3 1660 1692 SARS-CoV-2_5_RIGHT_0 1 - ATAATGGCGATCTCTTCATTAAGTTTAAAGTC +MN908947.3 1574 1596 SARS-CoV-2_6_LEFT_1 2 + GTGTTGTTGGAGAAGGTTCCGA +MN908947.3 1945 1972 SARS-CoV-2_6_RIGHT_1 2 - TATTGTTATAGCGGCCTTCTGTAAAAC +MN908947.3 1882 1905 SARS-CoV-2_7_LEFT_2 1 + GCTGCTCGTGTTGTACGATCAAT +MN908947.3 2259 2284 SARS-CoV-2_7_RIGHT_2 1 - CTCCTTAATTTCCTTTGCACAGGTG +MN908947.3 2229 2252 SARS-CoV-2_8_LEFT_0 2 + TGCTTGTGAAATTGTCGGTGGAC +MN908947.3 2603 2629 SARS-CoV-2_8_RIGHT_0 2 - AAGCCCGTTAATACAAACTGGTGTAC +MN908947.3 2533 2563 SARS-CoV-2_9_LEFT_0 1 + GTCTTGAAAACTGGTGATTTACAACCATTA +MN908947.3 2900 2933 SARS-CoV-2_9_RIGHT_0 1 - GTAATTCAGATACTGGTTGCAAAGTTTTTATGA +MN908947.3 2854 2880 SARS-CoV-2_10_LEFT_0 2 + CTCGGTACAGAAGTAAATGAGTTCGC +MN908947.3 3233 3254 SARS-CoV-2_10_RIGHT_0 2 - TGTCCTCACTGCCGTCTTGTT +MN908947.3 3184 3213 SARS-CoV-2_11_LEFT_0 1 + GAGCAAGAAGAAGATTGGTTAGATGATGA +MN908947.3 3560 3584 SARS-CoV-2_11_RIGHT_0 1 - CGCTTAAAACACAACTACCACCCA +MN908947.3 3510 3540 SARS-CoV-2_12_LEFT_0 2 + CATGCAAGTTGAATCTGATGATTACATAGC +MN908947.3 3883 3913 SARS-CoV-2_12_RIGHT_0 2 - AGTTATAAATGGCTTAACTTCCTCTTTAGG +MN908947.3 3791 3824 SARS-CoV-2_13_LEFT_0 1 + CTGTCTTTGATAAAAATCTCTATGACAAACTTG +MN908947.3 4147 4180 SARS-CoV-2_13_RIGHT_0 1 - CTTTTTAGTAGGTATAACCACAGCAGTTAAAAC +MN908947.3 4079 4108 SARS-CoV-2_14_LEFT_0 2 + GTGACATTGACATCACTTTCTTAAAGAAA +MN908947.3 4457 4488 SARS-CoV-2_14_RIGHT_0 2 - CCCTTATATTTACGCTGTATAGTTGAAACTA +MN908947.3 4403 4425 SARS-CoV-2_15_LEFT_0 1 + CACATGCAGAAGAAACACGCAA +MN908947.3 4776 4803 SARS-CoV-2_15_RIGHT_0 1 - TCTTTATAGGAACCAGCAAGTGAGATG +MN908947.3 4723 4756 SARS-CoV-2_16_LEFT_0 2 + AATGGTTATCTTACTTCTTCTTCTAAAACACCT +MN908947.3 5089 5119 SARS-CoV-2_16_RIGHT_0 2 - AAATGTTTTACCTTCATGTGAATTATGAGG +MN908947.3 5036 5063 SARS-CoV-2_17_LEFT_0 1 + GACAACAGTTTGGTCCAACTTATTTGG +MN908947.3 5398 5429 SARS-CoV-2_17_RIGHT_0 1 - CTGTCTTATTACAGTAGGCTAAGATAAGTGC +MN908947.3 5344 5370 SARS-CoV-2_18_LEFT_0 2 + GCTCTACAAGATGCTTATTACAGAGC +MN908947.3 5716 5744 SARS-CoV-2_18_RIGHT_0 2 - ACTCACTAGCACAAGTAAATGTACCATG +MN908947.3 5671 5696 SARS-CoV-2_19_LEFT_0 1 + CCTTTTGTTATGATGTCAGCACCAC +MN908947.3 6031 6062 SARS-CoV-2_19_RIGHT_0 1 - CACATACAAACTTAAAATTATCGAAGCTTGC +MN908947.3 5891 5923 SARS-CoV-2_20_LEFT_0 2 + CCATAAAACCAGTTACTTATAAATTGGATGGT +MN908947.3 6257 6288 SARS-CoV-2_20_RIGHT_0 2 - CAGGTATTTGGTTTATACGTGGCTTTATTAG +MN908947.3 6204 6237 SARS-CoV-2_21_LEFT_0 1 + GAAAGGAGCTAAATTGTTACATAAACCTATTGT +MN908947.3 6562 6595 SARS-CoV-2_21_RIGHT_0 1 - AGGTTTCTTAATAGTAAGACTAGAATTGTCTAC +MN908947.3 6515 6542 SARS-CoV-2_22_LEFT_0 2 + TAAAAATTACAGAAGAGGTTGGCCACA +MN908947.3 6882 6915 SARS-CoV-2_22_RIGHT_0 2 - TAATTAAATGAAGCCTCTAGACAAAATTTACCG +MN908947.3 6823 6854 SARS-CoV-2_23_LEFT_0 1 + AATTCTAGAATTAAAGCATCTATGCCGACTA +MN908947.3 7199 7229 SARS-CoV-2_23_RIGHT_0 1 - CAAAAGCAGTTAAATCCCATTTAAAAGATG +MN908947.3 7145 7179 SARS-CoV-2_24_LEFT_0 2 + GTTTAGATTCTTTAGACACCTATCCTTCTTTAGA +MN908947.3 7518 7545 SARS-CoV-2_24_RIGHT_0 2 - ACAATAGTTGTACATTCGACTCTTGTT +MN908947.3 7456 7482 SARS-CoV-2_25_LEFT_0 1 + GTGCATGTTGTAGACGGTTGTAATTC +MN908947.3 7819 7850 SARS-CoV-2_25_RIGHT_0 1 - CTCTCAGGTTGTCTAAGTTAACAAAATGAGA +MN908947.3 7768 7797 SARS-CoV-2_26_LEFT_0 2 + CATCTTTACTTTGATAAAGCTGGTCAAAA +MN908947.3 8136 8169 SARS-CoV-2_26_RIGHT_0 2 - GAAATAAAAGTAGATAAGACATTGTCTAAGGAC +MN908947.3 8085 8112 SARS-CoV-2_27_LEFT_0 1 + AAAACTCAAAACACTAGTTGCAACTGC +MN908947.3 8468 8498 SARS-CoV-2_27_RIGHT_0 1 - CACATGTCAACTTAAAAGGTAAGTTATTCT +MN908947.3 8406 8436 SARS-CoV-2_28_LEFT_0 2 + CGTTAAAGATTTCATGTCATTGTCTGAACA +MN908947.3 8781 8806 SARS-CoV-2_28_RIGHT_0 2 - ATTAGTATAACTACCACCACGCTGG +MN908947.3 8732 8761 SARS-CoV-2_29_LEFT_0 1 + CAGATACTTGTTTTGCTAACAAACATGCT +MN908947.3 9107 9129 SARS-CoV-2_29_RIGHT_0 1 - ACATAACGTGTGTCAGGGCGTA +MN908947.3 9023 9052 SARS-CoV-2_30_LEFT_0 2 + CAATTTTTAAAGATGCTTCTGGTAAGCCA +MN908947.3 9397 9423 SARS-CoV-2_30_RIGHT_0 2 - ACAATACCACCAGCTACTATAGATGC +MN908947.3 9299 9324 SARS-CoV-2_31_LEFT_1 1 + GATCTTTACCAGGAGTTTTCTGTGG +MN908947.3 9673 9706 SARS-CoV-2_31_RIGHT_0 1 - ACAAATGATATAAGCAATTGTTATCCAGAAAGG +MN908947.3 9571 9604 SARS-CoV-2_32_LEFT_0 2 + GGTGTTTATTCTGTTATTTACTTGTACTTGACA +MN908947.3 9949 9971 SARS-CoV-2_32_RIGHT_0 2 - TTGCGAGATGACAACAAGCAGC +MN908947.3 9896 9929 SARS-CoV-2_33_LEFT_0 1 + ATAATAAGTACAAGTATTTTAGTGGAGCAATGG +MN908947.3 10266 10295 SARS-CoV-2_33_RIGHT_0 1 - AATGTCCAATAACCCTGAGTTGAACATTA +MN908947.3 10215 10245 SARS-CoV-2_34_LEFT_0 2 + TGAAGATTTACTCATTCGTAAGTCTAATCA +MN908947.3 10587 10615 SARS-CoV-2_34_RIGHT_0 2 - GTCAACAAAAGGTCCATAAAAGTTACCT +MN908947.3 10527 10557 SARS-CoV-2_35_LEFT_0 1 + TTTTTGTTACATGCACCATATGGAATTACC +MN908947.3 10897 10927 SARS-CoV-2_35_RIGHT_0 1 - AAATTCATCTTCTAATAAAGCACTACCCAA +MN908947.3 10832 10865 SARS-CoV-2_36_LEFT_0 2 + CCGTTTTAGATATGTGTGCTTCATTAAAAGAAT +MN908947.3 11201 11232 SARS-CoV-2_36_RIGHT_0 2 - GGCATATAGACCATATTAAAATAAGCTACAG +MN908947.3 11152 11181 SARS-CoV-2_37_LEFT_0 1 + AAACATAAGCATGCATTTCTCTGTTTGTT +MN908947.3 11514 11536 SARS-CoV-2_37_RIGHT_0 1 - ACCTCTGGCCAAAAACATGACA +MN908947.3 11463 11494 SARS-CoV-2_38_LEFT_0 2 + GTGGGCTCTTATAATCTCTGTTACTTCTAAC +MN908947.3 11832 11863 SARS-CoV-2_38_RIGHT_0 2 - CTTTACATCTGACATTTTAGACTGTACAGTG +MN908947.3 11785 11811 SARS-CoV-2_39_LEFT_0 1 + AACATTAAATTGTTGGGTGTTGGTGG +MN908947.3 12161 12185 SARS-CoV-2_39_RIGHT_0 1 - CAGAATCACCATTAGCAACAGCCT +MN908947.3 12112 12137 SARS-CoV-2_40_LEFT_0 2 + TCCCTTCCATCATATGCAGCTTTTG +MN908947.3 12477 12510 SARS-CoV-2_40_RIGHT_0 2 - TTTTTATATGTGTTATAGTCTGGTATGACAACC +MN908947.3 12419 12444 SARS-CoV-2_41_LEFT_0 1 + CAAGAGATGGTTGTGTTCCCTTGAA +MN908947.3 12794 12819 SARS-CoV-2_41_RIGHT_0 1 - AACAGTGCAAGTACAAACCTACCTC +MN908947.3 12752 12774 SARS-CoV-2_42_LEFT_0 2 + GCACTGATGACAATGCGTTAGC +MN908947.3 13121 13146 SARS-CoV-2_42_RIGHT_0 2 - CAATTAGTGATTGGTTGTCCCCCAC +MN908947.3 13075 13099 SARS-CoV-2_43_LEFT_0 1 + GCTTTTGCTGTAGATGCTGCTAAA +MN908947.3 13458 13480 SARS-CoV-2_43_RIGHT_0 1 - CACCGCAAACCCGTTTAAAAAC +MN908947.3 13415 13435 SARS-CoV-2_44_LEFT_0 2 + ATCAACTCCGCGAACCCATG +MN908947.3 13787 13815 SARS-CoV-2_44_RIGHT_0 2 - TGCCATTGTGTATTTAGTAAGACGTTGA +MN908947.3 13738 13767 SARS-CoV-2_45_LEFT_0 1 + ACTTCTTTAAGTTTAGAATAGACGGTGAC +MN908947.3 14120 14144 SARS-CoV-2_45_RIGHT_0 1 - TCTACAACAGGAACTCCACTACCT +MN908947.3 14073 14100 SARS-CoV-2_46_LEFT_0 2 + CTCAATGGTAACTGGTATGATTTCGGT +MN908947.3 14427 14457 SARS-CoV-2_46_RIGHT_0 2 - TGGAACACCATCAACAAATATTTTTCTCAC +MN908947.3 14375 14407 SARS-CoV-2_47_LEFT_0 1 + CTTTAATGTTTTATTCTCTACAGTGTTCCCAC +MN908947.3 14745 14775 SARS-CoV-2_47_RIGHT_0 1 - ATCCTGAGCAAAGAAGAAGTGTTTTAATTC +MN908947.3 14700 14725 SARS-CoV-2_48_LEFT_0 2 + GACTTTGCTGTGTCTAAGGGTTTCT +MN908947.3 15065 15095 SARS-CoV-2_48_RIGHT_0 2 - TTCTTTGCACTAATGGCATACTTAAGATTC +MN908947.3 15016 15045 SARS-CoV-2_49_LEFT_0 1 + CACTTTTCGCATATACAAAACGTAATGTC +MN908947.3 15386 15416 SARS-CoV-2_49_RIGHT_0 1 - CACTCATTAGCTAATCTATAGAAACGGTGT +MN908947.3 15342 15366 SARS-CoV-2_50_LEFT_0 2 + TCACTTGTTCTTGCTCGCAAACAT +MN908947.3 15716 15742 SARS-CoV-2_50_RIGHT_0 2 - TATTGAAACACACAACAGCATCGTCA +MN908947.3 15659 15688 SARS-CoV-2_51_LEFT_0 1 + CTTTGTGAATGAGTTTTACGCATATTTGC +MN908947.3 16028 16059 SARS-CoV-2_51_RIGHT_0 1 - AGGATGTTTAGTAAGTGGGTAAGCATCTATA +MN908947.3 15992 16018 SARS-CoV-2_52_LEFT_2 2 + TGGTACACTTATGATTGAACGGTTCG +MN908947.3 16386 16409 SARS-CoV-2_52_RIGHT_2 2 - GTGACATCACAACCTGGAGCATT +MN908947.3 16285 16311 SARS-CoV-2_53_LEFT_0 1 + GTGCTTGCATACGTAGACCATTCTTA +MN908947.3 16650 16679 SARS-CoV-2_53_RIGHT_0 1 - GACAGTTTAAATGTCTCCTCAGTAGCTTT +MN908947.3 16624 16647 SARS-CoV-2_54_LEFT_1 2 + TCAAGCTTTTTGCAGCAGAAACG +MN908947.3 17004 17033 SARS-CoV-2_54_RIGHT_1 2 - ACATTGCTAGAAAACTCATCTGAGATATT +MN908947.3 16962 16994 SARS-CoV-2_55_LEFT_1 1 + CAAGAGCACTATGTTAGAATTACTGGCTTATA +MN908947.3 17333 17362 SARS-CoV-2_55_RIGHT_1 1 - TTTCATCAAAGACAACTATATCTGCTGTC +MN908947.3 17182 17212 SARS-CoV-2_56_LEFT_0 2 + CACTATGTGAGAAGGCATTAAAATATTTGC +MN908947.3 17560 17582 SARS-CoV-2_56_RIGHT_0 2 - ACAATTTCAGCAGGACAACGCC +MN908947.3 17478 17507 SARS-CoV-2_57_LEFT_0 1 + GGCACACTAGAACCAGAATATTTCAATTC +MN908947.3 17859 17886 SARS-CoV-2_57_RIGHT_0 1 - AGTGGTTTGAGTGAATATGACATAGTC +MN908947.3 17813 17839 SARS-CoV-2_58_LEFT_0 2 + GGGACTACCAACTCAAACTGTTGATT +MN908947.3 18181 18212 SARS-CoV-2_58_RIGHT_0 2 - ATCATAGAGATGAGTCTTCTATAGGTCATGT +MN908947.3 18121 18153 SARS-CoV-2_59_LEFT_0 1 + GTGTTGACACTAAATTCAAAACTGAAGGTTTA +MN908947.3 18504 18527 SARS-CoV-2_59_RIGHT_0 1 - CGCACTACATTCCAAGGAAGTCC +MN908947.3 18460 18484 SARS-CoV-2_60_LEFT_0 2 + CGCCTGGAGATCAATTTAAACACC +MN908947.3 18835 18860 SARS-CoV-2_60_RIGHT_0 2 - GCATCACAACTAGCTACATGTGCAT +MN908947.3 18789 18815 SARS-CoV-2_61_LEFT_0 1 + GGTAACCTACAAAGCAACCATGATCT +MN908947.3 19170 19195 SARS-CoV-2_61_RIGHT_0 1 - TCCAAAATAGGCATACACCATCTGT +MN908947.3 19087 19112 SARS-CoV-2_62_LEFT_2 2 + TCTATGATGCACAGCCTTGTAGTGA +MN908947.3 19469 19495 SARS-CoV-2_62_RIGHT_0 2 - GTCTACAGACAGCACCACCTAAATTG +MN908947.3 19415 19449 SARS-CoV-2_63_LEFT_0 1 + AGTGTCAGATATAGATTATGTACCACTAAAGTCT +MN908947.3 19770 19796 SARS-CoV-2_63_RIGHT_0 1 - GCCCAAAGCTCAAATGCTACATTAAC +MN908947.3 19721 19750 SARS-CoV-2_64_LEFT_0 2 + AGTTGATGGTGTTGATGTAGAATTGTTTG +MN908947.3 20091 20121 SARS-CoV-2_64_RIGHT_0 2 - TAATGTGACTCCATTAAGACTAGCTTGTTT +MN908947.3 20028 20054 SARS-CoV-2_65_LEFT_0 1 + GCCCGTAATGGTGTTCTTATTACAGA +MN908947.3 20408 20441 SARS-CoV-2_65_RIGHT_0 1 - GTACTGTCCATAGGAATAAAATCTTCTAATTCA +MN908947.3 20358 20388 SARS-CoV-2_66_LEFT_0 2 + GGTTTACATCTACTGATTGGACTAGCTAAA +MN908947.3 20729 20758 SARS-CoV-2_66_RIGHT_0 2 - CACTATCACCATAATTTTGAAGGTCACAC +MN908947.3 20650 20676 SARS-CoV-2_67_LEFT_1 1 + AATTACAATCTAGTCAAGCGTGGCAA +MN908947.3 21018 21051 SARS-CoV-2_67_RIGHT_1 1 - CATATCACTAATAATGAGATCCCATTTATTAGC +MN908947.3 20991 21018 SARS-CoV-2_68_LEFT_0 2 + ATTGGTGATTGTGCAACTGTACATACA +MN908947.3 21372 21402 SARS-CoV-2_68_RIGHT_0 2 - ACTCATGTCAAATAAAGAATAGGAAGACAA +MN908947.3 21322 21352 SARS-CoV-2_69_LEFT_0 1 + ATGTCATGCATGCAAATTACATATTTTGGA +MN908947.3 21696 21722 SARS-CoV-2_69_RIGHT_0 1 - AGTCCTGAGTTGAATGTAAAACTGAG +MN908947.3 21579 21607 SARS-CoV-2_70_LEFT_0 2 + TTTATTGCCACTAGTCTCTAGTCAGTGT +MN908947.3 21927 21960 SARS-CoV-2_70_RIGHT_0 2 - AATTCACAGACTTTAATAACAACATTAGTAGCG +MN908947.3 21866 21894 SARS-CoV-2_71_LEFT_0 1 + GAGGCTGGATTTTTGGTACTACTTTAGA +MN908947.3 22238 22266 SARS-CoV-2_71_RIGHT_0 1 - ATGTTAATACCTATTGGCAAATCTACCA +MN908947.3 22156 22189 SARS-CoV-2_72_LEFT_0 2 + GGTTATTTTAAAATATATTCTAAGCACACGCCT +MN908947.3 22517 22547 SARS-CoV-2_72_RIGHT_0 2 - ATCTAACAATAGATTCTGTTGGTTGGACTC +MN908947.3 22466 22494 SARS-CoV-2_73_LEFT_0 1 + CGTTGAAATCCTTCACTGTAGAAAAAGG +MN908947.3 22839 22866 SARS-CoV-2_73_RIGHT_0 1 - GCTATAACGCAGCCTGTAAAATCATCT +MN908947.3 22742 22774 SARS-CoV-2_74_LEFT_0 2 + ATGTCTATGCAGATTCATTTGTAATTAGAGGT +MN908947.3 23119 23140 SARS-CoV-2_74_RIGHT_0 2 - TCCACAAACAGTTGCTGGTGC +MN908947.3 23078 23109 SARS-CoV-2_75_LEFT_1 1 + AACCATACAGAGTAGTAGTACTTTCTTTTGA +MN908947.3 23452 23478 SARS-CoV-2_75_RIGHT_1 1 - CCTGTAGAATAAACACGCCAAGTAGG +MN908947.3 23229 23258 SARS-CoV-2_76_LEFT_0 2 + CAAAAAGTTTCTGCCTTTCCAACAATTTG +MN908947.3 23609 23631 SARS-CoV-2_76_RIGHT_0 2 - TGACTAGCTACACTACGTGCCC +MN908947.3 23563 23589 SARS-CoV-2_77_LEFT_0 1 + GCAGGTATATGCGCTAGTTATCAGAC +MN908947.3 23914 23944 SARS-CoV-2_77_RIGHT_0 1 - AATTGGTGGTGTTTTGTAAATTTGTTTGAC +MN908947.3 23823 23853 SARS-CoV-2_78_LEFT_0 2 + GCAATATGGCAGTTTTTGTACACAATTAAA +MN908947.3 24209 24231 SARS-CoV-2_78_RIGHT_0 2 - GCACCAAAGGTCCAACCAGAAG +MN908947.3 24160 24189 SARS-CoV-2_79_LEFT_0 1 + GATGAAATGATTGCTCAATACACTTCTGC +MN908947.3 24535 24560 SARS-CoV-2_79_RIGHT_0 1 - TGCCTGTGATCAACCTATCAATTTG +MN908947.3 24442 24468 SARS-CoV-2_80_LEFT_0 2 + ACGCTTGTTAAACAACTTAGCTCCAA +MN908947.3 24815 24839 SARS-CoV-2_80_RIGHT_0 2 - CTTCACGAGGAAAGTGTGCTTTTC +MN908947.3 24751 24774 SARS-CoV-2_81_LEFT_0 1 + CATGTGACTTATGTCCCTGCACA +MN908947.3 25120 25151 SARS-CoV-2_81_RIGHT_0 1 - GAGATTCATTTAAATTCTTGGCAACCTCATT +MN908947.3 25053 25082 SARS-CoV-2_82_LEFT_0 2 + TGATTTAGGTGACATCTCTGGCATTAATG +MN908947.3 25423 25452 SARS-CoV-2_82_RIGHT_0 2 - GATTTCACCTTGCTTCAAAGTTACAGTTC +MN908947.3 25372 25402 SARS-CoV-2_83_LEFT_0 1 + CATTACACATAAACGAACTTATGGATTTGT +MN908947.3 25744 25777 SARS-CoV-2_83_RIGHT_0 1 - GCCAAAGCCTCATTATTATTCTTACAAAGTTTA +MN908947.3 25653 25680 SARS-CoV-2_84_LEFT_2 2 + GTAACAGTTTACTCACACCTTTTGCTC +MN908947.3 26048 26072 SARS-CoV-2_84_RIGHT_2 2 - TGTTCAACACCAATGTCTGTACTC +MN908947.3 26048 26072 SARS-CoV-2_84_RIGHT_3 2 - TGTTCAACACCAGTGTCTGTACTC +MN908947.3 26011 26039 SARS-CoV-2_85_LEFT_0 1 + TCACTTCAGACTATTACCAGCTGTACTC +MN908947.3 26382 26411 SARS-CoV-2_85_RIGHT_0 1 - AAAGAAGGTTTTACAAGACTCACGTTAAC +MN908947.3 26339 26362 SARS-CoV-2_86_LEFT_0 2 + CATCCTTACTGCGCTTCGATTGT +MN908947.3 26730 26756 SARS-CoV-2_86_RIGHT_0 2 - ACCGGTGATCCAATTTATTCTGTAAA +MN908947.3 26593 26621 SARS-CoV-2_87_LEFT_1 1 + AGGTTTCCTATTCCTTACATGGATTTGT +MN908947.3 26989 27009 SARS-CoV-2_87_RIGHT_1 1 - CCTTGATGTCACAGCGTCCT +MN908947.3 26958 26981 SARS-CoV-2_88_LEFT_2 2 + GTGGACATCTTCGTATTGCTGGA +MN908947.3 27349 27376 SARS-CoV-2_88_RIGHT_2 2 - CCATTGGTTGCTCTTCATCTAATTGAG +MN908947.3 27200 27226 SARS-CoV-2_89_LEFT_2 1 + GATGTTTCATCTCGTTGACTTTCAGG +MN908947.3 27583 27603 SARS-CoV-2_89_RIGHT_0 1 - GCCGTCAGGACAAGCAAAAG +MN908947.3 27530 27558 SARS-CoV-2_90_LEFT_0 2 + TCATCCTCTAGCTGATAACAAATTTGCA +MN908947.3 27927 27950 SARS-CoV-2_90_RIGHT_0 2 - TTCTTGGTGAAATGCAGCTACAG +MN908947.3 27832 27860 SARS-CoV-2_91_LEFT_0 1 + TATCTTTTGGTTCTCACTTGAACTGCAA +MN908947.3 28209 28237 SARS-CoV-2_91_RIGHT_0 1 - CGAACGTCATGATACTCTAAAAAGTCTT +MN908947.3 28135 28166 SARS-CoV-2_92_LEFT_0 2 + TTCCTGTTTACCTTTTACAATTAATTGCCAG +MN908947.3 28513 28539 SARS-CoV-2_92_RIGHT_0 2 - CTTCGGTAGTAGCCAATTTGGTCATC +MN908947.3 28473 28493 SARS-CoV-2_93_LEFT_0 1 + TCGAGGACAAGGCGTTCCAA +MN908947.3 28849 28873 SARS-CoV-2_93_RIGHT_0 1 - GCCTGGAGTTGAATTTCTTGAACT +MN908947.3 28808 28829 SARS-CoV-2_94_LEFT_0 2 + GCAGTCAAGCCTCTTCTCGTT +MN908947.3 29203 29224 SARS-CoV-2_94_RIGHT_0 2 - CATTCCGAAGAACGCTGAAGC +MN908947.3 29159 29183 SARS-CoV-2_95_LEFT_0 1 + CTGATTACAAACATTGGCCGCAAA +MN908947.3 29538 29559 SARS-CoV-2_95_RIGHT_0 1 - ATCTGCCTTGTGTGGTCTGCA +MN908947.3 29462 29486 SARS-CoV-2_96_LEFT_1 2 + CTGCAGATTTGGATGATTTCTCCA +MN908947.3 29840 29873 SARS-CoV-2_96_RIGHT_0 2 - TTTGTCATTCTCCTAAGAAGCTATTAAAATCAC diff --git a/schemes/sars-cov-2/artic/400/v5.3.2/primer.svg b/schemes/sars-cov-2/artic/400/v5.3.2/primer.svg new file mode 100644 index 0000000..0e0cf1b --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.3.2/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/artic/v5.2.0_1200/reference.fasta b/schemes/sars-cov-2/artic/400/v5.3.2/reference.fasta similarity index 100% rename from sars-cov-2/artic/v5.2.0_1200/reference.fasta rename to schemes/sars-cov-2/artic/400/v5.3.2/reference.fasta diff --git a/schemes/sars-cov-2/artic/400/v5.3.2/scheme.bed b/schemes/sars-cov-2/artic/400/v5.3.2/scheme.bed new file mode 100644 index 0000000..e0f4514 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.3.2/scheme.bed @@ -0,0 +1,193 @@ +MN908947.3 47 78 SARS-CoV-2_1_LEFT_1 1 + +MN908947.3 419 447 SARS-CoV-2_1_RIGHT_1 1 - +MN908947.3 344 366 SARS-CoV-2_2_LEFT_0 2 + +MN908947.3 707 732 SARS-CoV-2_2_RIGHT_0 2 - +MN908947.3 638 661 SARS-CoV-2_3_LEFT_1 1 + +MN908947.3 1018 1047 SARS-CoV-2_3_RIGHT_0 1 - +MN908947.3 970 995 SARS-CoV-2_4_LEFT_0 2 + +MN908947.3 1340 1370 SARS-CoV-2_4_RIGHT_0 2 - +MN908947.3 1292 1320 SARS-CoV-2_5_LEFT_0 1 + +MN908947.3 1660 1692 SARS-CoV-2_5_RIGHT_0 1 - +MN908947.3 1574 1596 SARS-CoV-2_6_LEFT_1 2 + +MN908947.3 1945 1972 SARS-CoV-2_6_RIGHT_1 2 - +MN908947.3 1882 1905 SARS-CoV-2_7_LEFT_2 1 + +MN908947.3 2259 2284 SARS-CoV-2_7_RIGHT_2 1 - +MN908947.3 2229 2252 SARS-CoV-2_8_LEFT_0 2 + +MN908947.3 2603 2629 SARS-CoV-2_8_RIGHT_0 2 - +MN908947.3 2533 2563 SARS-CoV-2_9_LEFT_0 1 + +MN908947.3 2900 2933 SARS-CoV-2_9_RIGHT_0 1 - +MN908947.3 2854 2880 SARS-CoV-2_10_LEFT_0 2 + +MN908947.3 3233 3254 SARS-CoV-2_10_RIGHT_0 2 - +MN908947.3 3184 3213 SARS-CoV-2_11_LEFT_0 1 + +MN908947.3 3560 3584 SARS-CoV-2_11_RIGHT_0 1 - +MN908947.3 3510 3540 SARS-CoV-2_12_LEFT_0 2 + +MN908947.3 3883 3913 SARS-CoV-2_12_RIGHT_0 2 - +MN908947.3 3791 3824 SARS-CoV-2_13_LEFT_0 1 + +MN908947.3 4147 4180 SARS-CoV-2_13_RIGHT_0 1 - +MN908947.3 4079 4108 SARS-CoV-2_14_LEFT_0 2 + +MN908947.3 4457 4488 SARS-CoV-2_14_RIGHT_0 2 - +MN908947.3 4403 4425 SARS-CoV-2_15_LEFT_0 1 + +MN908947.3 4776 4803 SARS-CoV-2_15_RIGHT_0 1 - +MN908947.3 4723 4756 SARS-CoV-2_16_LEFT_0 2 + +MN908947.3 5089 5119 SARS-CoV-2_16_RIGHT_0 2 - +MN908947.3 5036 5063 SARS-CoV-2_17_LEFT_0 1 + +MN908947.3 5398 5429 SARS-CoV-2_17_RIGHT_0 1 - +MN908947.3 5344 5370 SARS-CoV-2_18_LEFT_0 2 + +MN908947.3 5716 5744 SARS-CoV-2_18_RIGHT_0 2 - +MN908947.3 5671 5696 SARS-CoV-2_19_LEFT_0 1 + +MN908947.3 6031 6062 SARS-CoV-2_19_RIGHT_0 1 - +MN908947.3 5891 5923 SARS-CoV-2_20_LEFT_0 2 + +MN908947.3 6257 6288 SARS-CoV-2_20_RIGHT_0 2 - +MN908947.3 6204 6237 SARS-CoV-2_21_LEFT_0 1 + +MN908947.3 6562 6595 SARS-CoV-2_21_RIGHT_0 1 - +MN908947.3 6515 6542 SARS-CoV-2_22_LEFT_0 2 + +MN908947.3 6882 6915 SARS-CoV-2_22_RIGHT_0 2 - +MN908947.3 6823 6854 SARS-CoV-2_23_LEFT_0 1 + +MN908947.3 7199 7229 SARS-CoV-2_23_RIGHT_0 1 - +MN908947.3 7145 7179 SARS-CoV-2_24_LEFT_0 2 + +MN908947.3 7518 7545 SARS-CoV-2_24_RIGHT_0 2 - +MN908947.3 7456 7482 SARS-CoV-2_25_LEFT_0 1 + +MN908947.3 7819 7850 SARS-CoV-2_25_RIGHT_0 1 - +MN908947.3 7768 7797 SARS-CoV-2_26_LEFT_0 2 + +MN908947.3 8136 8169 SARS-CoV-2_26_RIGHT_0 2 - +MN908947.3 8085 8112 SARS-CoV-2_27_LEFT_0 1 + +MN908947.3 8468 8498 SARS-CoV-2_27_RIGHT_0 1 - +MN908947.3 8406 8436 SARS-CoV-2_28_LEFT_0 2 + +MN908947.3 8781 8806 SARS-CoV-2_28_RIGHT_0 2 - +MN908947.3 8732 8761 SARS-CoV-2_29_LEFT_0 1 + +MN908947.3 9107 9129 SARS-CoV-2_29_RIGHT_0 1 - +MN908947.3 9023 9052 SARS-CoV-2_30_LEFT_0 2 + +MN908947.3 9397 9423 SARS-CoV-2_30_RIGHT_0 2 - +MN908947.3 9299 9324 SARS-CoV-2_31_LEFT_1 1 + +MN908947.3 9673 9706 SARS-CoV-2_31_RIGHT_0 1 - +MN908947.3 9571 9604 SARS-CoV-2_32_LEFT_0 2 + +MN908947.3 9949 9971 SARS-CoV-2_32_RIGHT_0 2 - +MN908947.3 9896 9929 SARS-CoV-2_33_LEFT_0 1 + +MN908947.3 10266 10295 SARS-CoV-2_33_RIGHT_0 1 - +MN908947.3 10215 10245 SARS-CoV-2_34_LEFT_0 2 + +MN908947.3 10587 10615 SARS-CoV-2_34_RIGHT_0 2 - +MN908947.3 10527 10557 SARS-CoV-2_35_LEFT_0 1 + +MN908947.3 10897 10927 SARS-CoV-2_35_RIGHT_0 1 - +MN908947.3 10832 10865 SARS-CoV-2_36_LEFT_0 2 + +MN908947.3 11201 11232 SARS-CoV-2_36_RIGHT_0 2 - +MN908947.3 11152 11181 SARS-CoV-2_37_LEFT_0 1 + +MN908947.3 11514 11536 SARS-CoV-2_37_RIGHT_0 1 - +MN908947.3 11463 11494 SARS-CoV-2_38_LEFT_0 2 + +MN908947.3 11832 11863 SARS-CoV-2_38_RIGHT_0 2 - +MN908947.3 11785 11811 SARS-CoV-2_39_LEFT_0 1 + +MN908947.3 12161 12185 SARS-CoV-2_39_RIGHT_0 1 - +MN908947.3 12112 12137 SARS-CoV-2_40_LEFT_0 2 + +MN908947.3 12477 12510 SARS-CoV-2_40_RIGHT_0 2 - +MN908947.3 12419 12444 SARS-CoV-2_41_LEFT_0 1 + +MN908947.3 12794 12819 SARS-CoV-2_41_RIGHT_0 1 - +MN908947.3 12752 12774 SARS-CoV-2_42_LEFT_0 2 + +MN908947.3 13121 13146 SARS-CoV-2_42_RIGHT_0 2 - +MN908947.3 13075 13099 SARS-CoV-2_43_LEFT_0 1 + +MN908947.3 13458 13480 SARS-CoV-2_43_RIGHT_0 1 - +MN908947.3 13415 13435 SARS-CoV-2_44_LEFT_0 2 + +MN908947.3 13787 13815 SARS-CoV-2_44_RIGHT_0 2 - +MN908947.3 13738 13767 SARS-CoV-2_45_LEFT_0 1 + +MN908947.3 14120 14144 SARS-CoV-2_45_RIGHT_0 1 - +MN908947.3 14073 14100 SARS-CoV-2_46_LEFT_0 2 + +MN908947.3 14427 14457 SARS-CoV-2_46_RIGHT_0 2 - +MN908947.3 14375 14407 SARS-CoV-2_47_LEFT_0 1 + +MN908947.3 14745 14775 SARS-CoV-2_47_RIGHT_0 1 - +MN908947.3 14700 14725 SARS-CoV-2_48_LEFT_0 2 + +MN908947.3 15065 15095 SARS-CoV-2_48_RIGHT_0 2 - +MN908947.3 15016 15045 SARS-CoV-2_49_LEFT_0 1 + +MN908947.3 15386 15416 SARS-CoV-2_49_RIGHT_0 1 - +MN908947.3 15342 15366 SARS-CoV-2_50_LEFT_0 2 + +MN908947.3 15716 15742 SARS-CoV-2_50_RIGHT_0 2 - +MN908947.3 15659 15688 SARS-CoV-2_51_LEFT_0 1 + +MN908947.3 16028 16059 SARS-CoV-2_51_RIGHT_0 1 - +MN908947.3 15992 16018 SARS-CoV-2_52_LEFT_2 2 + +MN908947.3 16386 16409 SARS-CoV-2_52_RIGHT_2 2 - +MN908947.3 16285 16311 SARS-CoV-2_53_LEFT_0 1 + +MN908947.3 16650 16679 SARS-CoV-2_53_RIGHT_0 1 - +MN908947.3 16624 16647 SARS-CoV-2_54_LEFT_1 2 + +MN908947.3 17004 17033 SARS-CoV-2_54_RIGHT_1 2 - +MN908947.3 16962 16994 SARS-CoV-2_55_LEFT_1 1 + +MN908947.3 17333 17362 SARS-CoV-2_55_RIGHT_1 1 - +MN908947.3 17182 17212 SARS-CoV-2_56_LEFT_0 2 + +MN908947.3 17560 17582 SARS-CoV-2_56_RIGHT_0 2 - +MN908947.3 17478 17507 SARS-CoV-2_57_LEFT_0 1 + +MN908947.3 17859 17886 SARS-CoV-2_57_RIGHT_0 1 - +MN908947.3 17813 17839 SARS-CoV-2_58_LEFT_0 2 + +MN908947.3 18181 18212 SARS-CoV-2_58_RIGHT_0 2 - +MN908947.3 18121 18153 SARS-CoV-2_59_LEFT_0 1 + +MN908947.3 18504 18527 SARS-CoV-2_59_RIGHT_0 1 - +MN908947.3 18460 18484 SARS-CoV-2_60_LEFT_0 2 + +MN908947.3 18835 18860 SARS-CoV-2_60_RIGHT_0 2 - +MN908947.3 18789 18815 SARS-CoV-2_61_LEFT_0 1 + +MN908947.3 19170 19195 SARS-CoV-2_61_RIGHT_0 1 - +MN908947.3 19087 19112 SARS-CoV-2_62_LEFT_2 2 + +MN908947.3 19469 19495 SARS-CoV-2_62_RIGHT_0 2 - +MN908947.3 19415 19449 SARS-CoV-2_63_LEFT_0 1 + +MN908947.3 19770 19796 SARS-CoV-2_63_RIGHT_0 1 - +MN908947.3 19721 19750 SARS-CoV-2_64_LEFT_0 2 + +MN908947.3 20091 20121 SARS-CoV-2_64_RIGHT_0 2 - +MN908947.3 20028 20054 SARS-CoV-2_65_LEFT_0 1 + +MN908947.3 20408 20441 SARS-CoV-2_65_RIGHT_0 1 - +MN908947.3 20358 20388 SARS-CoV-2_66_LEFT_0 2 + +MN908947.3 20729 20758 SARS-CoV-2_66_RIGHT_0 2 - +MN908947.3 20650 20676 SARS-CoV-2_67_LEFT_1 1 + +MN908947.3 21018 21051 SARS-CoV-2_67_RIGHT_1 1 - +MN908947.3 20991 21018 SARS-CoV-2_68_LEFT_0 2 + +MN908947.3 21372 21402 SARS-CoV-2_68_RIGHT_0 2 - +MN908947.3 21322 21352 SARS-CoV-2_69_LEFT_0 1 + +MN908947.3 21696 21722 SARS-CoV-2_69_RIGHT_0 1 - +MN908947.3 21579 21607 SARS-CoV-2_70_LEFT_0 2 + +MN908947.3 21927 21960 SARS-CoV-2_70_RIGHT_0 2 - +MN908947.3 21866 21894 SARS-CoV-2_71_LEFT_0 1 + +MN908947.3 22238 22266 SARS-CoV-2_71_RIGHT_0 1 - +MN908947.3 22156 22189 SARS-CoV-2_72_LEFT_0 2 + +MN908947.3 22517 22547 SARS-CoV-2_72_RIGHT_0 2 - +MN908947.3 22466 22494 SARS-CoV-2_73_LEFT_0 1 + +MN908947.3 22839 22866 SARS-CoV-2_73_RIGHT_0 1 - +MN908947.3 22742 22774 SARS-CoV-2_74_LEFT_0 2 + +MN908947.3 23119 23140 SARS-CoV-2_74_RIGHT_0 2 - +MN908947.3 23078 23109 SARS-CoV-2_75_LEFT_1 1 + +MN908947.3 23452 23478 SARS-CoV-2_75_RIGHT_1 1 - +MN908947.3 23229 23258 SARS-CoV-2_76_LEFT_0 2 + +MN908947.3 23609 23631 SARS-CoV-2_76_RIGHT_0 2 - +MN908947.3 23563 23589 SARS-CoV-2_77_LEFT_0 1 + +MN908947.3 23914 23944 SARS-CoV-2_77_RIGHT_0 1 - +MN908947.3 23823 23853 SARS-CoV-2_78_LEFT_0 2 + +MN908947.3 24209 24231 SARS-CoV-2_78_RIGHT_0 2 - +MN908947.3 24160 24189 SARS-CoV-2_79_LEFT_0 1 + +MN908947.3 24535 24560 SARS-CoV-2_79_RIGHT_0 1 - +MN908947.3 24442 24468 SARS-CoV-2_80_LEFT_0 2 + +MN908947.3 24815 24839 SARS-CoV-2_80_RIGHT_0 2 - +MN908947.3 24751 24774 SARS-CoV-2_81_LEFT_0 1 + +MN908947.3 25120 25151 SARS-CoV-2_81_RIGHT_0 1 - +MN908947.3 25053 25082 SARS-CoV-2_82_LEFT_0 2 + +MN908947.3 25423 25452 SARS-CoV-2_82_RIGHT_0 2 - +MN908947.3 25372 25402 SARS-CoV-2_83_LEFT_0 1 + +MN908947.3 25744 25777 SARS-CoV-2_83_RIGHT_0 1 - +MN908947.3 25653 25680 SARS-CoV-2_84_LEFT_2 2 + +MN908947.3 26048 26072 SARS-CoV-2_84_RIGHT_2 2 - +MN908947.3 26048 26072 SARS-CoV-2_84_RIGHT_3 2 - +MN908947.3 26011 26039 SARS-CoV-2_85_LEFT_0 1 + +MN908947.3 26382 26411 SARS-CoV-2_85_RIGHT_0 1 - +MN908947.3 26339 26362 SARS-CoV-2_86_LEFT_0 2 + +MN908947.3 26730 26756 SARS-CoV-2_86_RIGHT_0 2 - +MN908947.3 26593 26621 SARS-CoV-2_87_LEFT_1 1 + +MN908947.3 26989 27009 SARS-CoV-2_87_RIGHT_1 1 - +MN908947.3 26958 26981 SARS-CoV-2_88_LEFT_2 2 + +MN908947.3 27349 27376 SARS-CoV-2_88_RIGHT_2 2 - +MN908947.3 27200 27226 SARS-CoV-2_89_LEFT_2 1 + +MN908947.3 27583 27603 SARS-CoV-2_89_RIGHT_0 1 - +MN908947.3 27530 27558 SARS-CoV-2_90_LEFT_0 2 + +MN908947.3 27927 27950 SARS-CoV-2_90_RIGHT_0 2 - +MN908947.3 27832 27860 SARS-CoV-2_91_LEFT_0 1 + +MN908947.3 28209 28237 SARS-CoV-2_91_RIGHT_0 1 - +MN908947.3 28135 28166 SARS-CoV-2_92_LEFT_0 2 + +MN908947.3 28513 28539 SARS-CoV-2_92_RIGHT_0 2 - +MN908947.3 28473 28493 SARS-CoV-2_93_LEFT_0 1 + +MN908947.3 28849 28873 SARS-CoV-2_93_RIGHT_0 1 - +MN908947.3 28808 28829 SARS-CoV-2_94_LEFT_0 2 + +MN908947.3 29203 29224 SARS-CoV-2_94_RIGHT_0 2 - +MN908947.3 29159 29183 SARS-CoV-2_95_LEFT_0 1 + +MN908947.3 29538 29559 SARS-CoV-2_95_RIGHT_0 1 - +MN908947.3 29462 29486 SARS-CoV-2_96_LEFT_1 2 + +MN908947.3 29840 29873 SARS-CoV-2_96_RIGHT_0 2 - diff --git a/schemes/sars-cov-2/artic/400/v5.4.2/info.yml b/schemes/sars-cov-2/artic/400/v5.4.2/info.yml new file mode 100644 index 0000000..ec3ca66 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.4.2/info.yml @@ -0,0 +1,17 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: artic +amplicon_size: 400 +version: v5.4.2 +derived_from: sars-cov-2/artic/400/v5.3.2 +aliases: +- ARTIC/V5.4.2 +developers: +- ARTIC network +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.4.2 +source_url: https://github.com/quick-lab/primerschemes/tree/main/primerschemes/artic-sars-cov-2/400/v5.4.2 +citations: +- https://doi.org/10.1101%2F2020.09.04.283077 +license: CC-BY-SA-4.0 +primer_checksum: primaschema:294136d77eb67db8 +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/artic/400/v5.4.2/primer.bed b/schemes/sars-cov-2/artic/400/v5.4.2/primer.bed new file mode 100644 index 0000000..1424d38 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.4.2/primer.bed @@ -0,0 +1,192 @@ +MN908947.3 47 78 SARS-CoV-2_1_LEFT_1 1 + CTCTTGTAGATCTGTTCTCTAAACGAACTTT +MN908947.3 419 447 SARS-CoV-2_1_RIGHT_1 1 - AAAACGCCTTTTTCAACTTCTACTAAGC +MN908947.3 344 366 SARS-CoV-2_2_LEFT_0 2 + TCGTACGTGGCTTTGGAGACTC +MN908947.3 707 732 SARS-CoV-2_2_RIGHT_0 2 - TCTTCATAAGGATCAGTGCCAAGCT +MN908947.3 638 661 SARS-CoV-2_3_LEFT_1 1 + AGAACGGTAATAAAGGAGCTGGT +MN908947.3 1018 1047 SARS-CoV-2_3_RIGHT_0 1 - TTTGCCAATTTAATTTCAAAAGGTGTCTG +MN908947.3 970 995 SARS-CoV-2_4_LEFT_0 2 + CATGAAATTGCTTGGTACACGGAAC +MN908947.3 1340 1370 SARS-CoV-2_4_RIGHT_0 2 - AAATTTTAACAACAGCATTTTGGGGTAAGT +MN908947.3 1292 1320 SARS-CoV-2_5_LEFT_0 1 + TTTGTGGCACTGAGAATTTGACTAAAGA +MN908947.3 1660 1692 SARS-CoV-2_5_RIGHT_0 1 - ATAATGGCGATCTCTTCATTAAGTTTAAAGTC +MN908947.3 1574 1596 SARS-CoV-2_6_LEFT_1 2 + GTGTTGTTGGAGAAGGTTCCGA +MN908947.3 1945 1972 SARS-CoV-2_6_RIGHT_1 2 - TATTGTTATAGCGGCCTTCTGTAAAAC +MN908947.3 1882 1905 SARS-CoV-2_7_LEFT_2 1 + GCTGCTCGTGTTGTACGATCAAT +MN908947.3 2259 2284 SARS-CoV-2_7_RIGHT_2 1 - CTCCTTAATTTCCTTTGCACAGGTG +MN908947.3 2229 2252 SARS-CoV-2_8_LEFT_0 2 + TGCTTGTGAAATTGTCGGTGGAC +MN908947.3 2603 2629 SARS-CoV-2_8_RIGHT_0 2 - AAGCCCGTTAATACAAACTGGTGTAC +MN908947.3 2533 2563 SARS-CoV-2_9_LEFT_0 1 + GTCTTGAAAACTGGTGATTTACAACCATTA +MN908947.3 2900 2933 SARS-CoV-2_9_RIGHT_0 1 - GTAATTCAGATACTGGTTGCAAAGTTTTTATGA +MN908947.3 2854 2880 SARS-CoV-2_10_LEFT_0 2 + CTCGGTACAGAAGTAAATGAGTTCGC +MN908947.3 3233 3254 SARS-CoV-2_10_RIGHT_0 2 - TGTCCTCACTGCCGTCTTGTT +MN908947.3 3184 3213 SARS-CoV-2_11_LEFT_0 1 + GAGCAAGAAGAAGATTGGTTAGATGATGA +MN908947.3 3560 3584 SARS-CoV-2_11_RIGHT_0 1 - CGCTTAAAACACAACTACCACCCA +MN908947.3 3510 3540 SARS-CoV-2_12_LEFT_0 2 + CATGCAAGTTGAATCTGATGATTACATAGC +MN908947.3 3883 3913 SARS-CoV-2_12_RIGHT_0 2 - AGTTATAAATGGCTTAACTTCCTCTTTAGG +MN908947.3 3791 3824 SARS-CoV-2_13_LEFT_0 1 + CTGTCTTTGATAAAAATCTCTATGACAAACTTG +MN908947.3 4147 4180 SARS-CoV-2_13_RIGHT_0 1 - CTTTTTAGTAGGTATAACCACAGCAGTTAAAAC +MN908947.3 4079 4108 SARS-CoV-2_14_LEFT_0 2 + GTGACATTGACATCACTTTCTTAAAGAAA +MN908947.3 4457 4488 SARS-CoV-2_14_RIGHT_0 2 - CCCTTATATTTACGCTGTATAGTTGAAACTA +MN908947.3 4403 4425 SARS-CoV-2_15_LEFT_0 1 + CACATGCAGAAGAAACACGCAA +MN908947.3 4776 4803 SARS-CoV-2_15_RIGHT_0 1 - TCTTTATAGGAACCAGCAAGTGAGATG +MN908947.3 4723 4756 SARS-CoV-2_16_LEFT_0 2 + AATGGTTATCTTACTTCTTCTTCTAAAACACCT +MN908947.3 5089 5119 SARS-CoV-2_16_RIGHT_0 2 - AAATGTTTTACCTTCATGTGAATTATGAGG +MN908947.3 5036 5063 SARS-CoV-2_17_LEFT_0 1 + GACAACAGTTTGGTCCAACTTATTTGG +MN908947.3 5398 5429 SARS-CoV-2_17_RIGHT_0 1 - CTGTCTTATTACAGTAGGCTAAGATAAGTGC +MN908947.3 5344 5370 SARS-CoV-2_18_LEFT_0 2 + GCTCTACAAGATGCTTATTACAGAGC +MN908947.3 5716 5744 SARS-CoV-2_18_RIGHT_0 2 - ACTCACTAGCACAAGTAAATGTACCATG +MN908947.3 5671 5696 SARS-CoV-2_19_LEFT_0 1 + CCTTTTGTTATGATGTCAGCACCAC +MN908947.3 6031 6062 SARS-CoV-2_19_RIGHT_0 1 - CACATACAAACTTAAAATTATCGAAGCTTGC +MN908947.3 5891 5923 SARS-CoV-2_20_LEFT_0 2 + CCATAAAACCAGTTACTTATAAATTGGATGGT +MN908947.3 6257 6288 SARS-CoV-2_20_RIGHT_0 2 - CAGGTATTTGGTTTATACGTGGCTTTATTAG +MN908947.3 6204 6237 SARS-CoV-2_21_LEFT_0 1 + GAAAGGAGCTAAATTGTTACATAAACCTATTGT +MN908947.3 6562 6595 SARS-CoV-2_21_RIGHT_0 1 - AGGTTTCTTAATAGTAAGACTAGAATTGTCTAC +MN908947.3 6515 6542 SARS-CoV-2_22_LEFT_0 2 + TAAAAATTACAGAAGAGGTTGGCCACA +MN908947.3 6882 6915 SARS-CoV-2_22_RIGHT_0 2 - TAATTAAATGAAGCCTCTAGACAAAATTTACCG +MN908947.3 6823 6854 SARS-CoV-2_23_LEFT_0 1 + AATTCTAGAATTAAAGCATCTATGCCGACTA +MN908947.3 7199 7229 SARS-CoV-2_23_RIGHT_0 1 - CAAAAGCAGTTAAATCCCATTTAAAAGATG +MN908947.3 7145 7179 SARS-CoV-2_24_LEFT_0 2 + GTTTAGATTCTTTAGACACCTATCCTTCTTTAGA +MN908947.3 7518 7545 SARS-CoV-2_24_RIGHT_0 2 - ACAATAGTTGTACATTCGACTCTTGTT +MN908947.3 7456 7482 SARS-CoV-2_25_LEFT_0 1 + GTGCATGTTGTAGACGGTTGTAATTC +MN908947.3 7819 7850 SARS-CoV-2_25_RIGHT_0 1 - CTCTCAGGTTGTCTAAGTTAACAAAATGAGA +MN908947.3 7768 7797 SARS-CoV-2_26_LEFT_0 2 + CATCTTTACTTTGATAAAGCTGGTCAAAA +MN908947.3 8136 8169 SARS-CoV-2_26_RIGHT_0 2 - GAAATAAAAGTAGATAAGACATTGTCTAAGGAC +MN908947.3 8085 8112 SARS-CoV-2_27_LEFT_0 1 + AAAACTCAAAACACTAGTTGCAACTGC +MN908947.3 8468 8498 SARS-CoV-2_27_RIGHT_0 1 - CACATGTCAACTTAAAAGGTAAGTTATTCT +MN908947.3 8406 8436 SARS-CoV-2_28_LEFT_0 2 + CGTTAAAGATTTCATGTCATTGTCTGAACA +MN908947.3 8781 8806 SARS-CoV-2_28_RIGHT_0 2 - ATTAGTATAACTACCACCACGCTGG +MN908947.3 8732 8761 SARS-CoV-2_29_LEFT_0 1 + CAGATACTTGTTTTGCTAACAAACATGCT +MN908947.3 9107 9129 SARS-CoV-2_29_RIGHT_0 1 - ACATAACGTGTGTCAGGGCGTA +MN908947.3 9023 9052 SARS-CoV-2_30_LEFT_0 2 + CAATTTTTAAAGATGCTTCTGGTAAGCCA +MN908947.3 9397 9423 SARS-CoV-2_30_RIGHT_0 2 - ACAATACCACCAGCTACTATAGATGC +MN908947.3 9299 9324 SARS-CoV-2_31_LEFT_1 1 + GATCTTTACCAGGAGTTTTCTGTGG +MN908947.3 9673 9706 SARS-CoV-2_31_RIGHT_0 1 - ACAAATGATATAAGCAATTGTTATCCAGAAAGG +MN908947.3 9571 9604 SARS-CoV-2_32_LEFT_0 2 + GGTGTTTATTCTGTTATTTACTTGTACTTGACA +MN908947.3 9949 9971 SARS-CoV-2_32_RIGHT_0 2 - TTGCGAGATGACAACAAGCAGC +MN908947.3 9896 9929 SARS-CoV-2_33_LEFT_0 1 + ATAATAAGTACAAGTATTTTAGTGGAGCAATGG +MN908947.3 10266 10295 SARS-CoV-2_33_RIGHT_0 1 - AATGTCCAATAACCCTGAGTTGAACATTA +MN908947.3 10215 10245 SARS-CoV-2_34_LEFT_0 2 + TGAAGATTTACTCATTCGTAAGTCTAATCA +MN908947.3 10587 10615 SARS-CoV-2_34_RIGHT_0 2 - GTCAACAAAAGGTCCATAAAAGTTACCT +MN908947.3 10527 10557 SARS-CoV-2_35_LEFT_0 1 + TTTTTGTTACATGCACCATATGGAATTACC +MN908947.3 10897 10927 SARS-CoV-2_35_RIGHT_0 1 - AAATTCATCTTCTAATAAAGCACTACCCAA +MN908947.3 10832 10865 SARS-CoV-2_36_LEFT_0 2 + CCGTTTTAGATATGTGTGCTTCATTAAAAGAAT +MN908947.3 11201 11232 SARS-CoV-2_36_RIGHT_0 2 - GGCATATAGACCATATTAAAATAAGCTACAG +MN908947.3 11152 11181 SARS-CoV-2_37_LEFT_0 1 + AAACATAAGCATGCATTTCTCTGTTTGTT +MN908947.3 11514 11536 SARS-CoV-2_37_RIGHT_0 1 - ACCTCTGGCCAAAAACATGACA +MN908947.3 11463 11494 SARS-CoV-2_38_LEFT_0 2 + GTGGGCTCTTATAATCTCTGTTACTTCTAAC +MN908947.3 11832 11863 SARS-CoV-2_38_RIGHT_0 2 - CTTTACATCTGACATTTTAGACTGTACAGTG +MN908947.3 11785 11811 SARS-CoV-2_39_LEFT_0 1 + AACATTAAATTGTTGGGTGTTGGTGG +MN908947.3 12161 12185 SARS-CoV-2_39_RIGHT_0 1 - CAGAATCACCATTAGCAACAGCCT +MN908947.3 12112 12137 SARS-CoV-2_40_LEFT_0 2 + TCCCTTCCATCATATGCAGCTTTTG +MN908947.3 12477 12510 SARS-CoV-2_40_RIGHT_0 2 - TTTTTATATGTGTTATAGTCTGGTATGACAACC +MN908947.3 12419 12444 SARS-CoV-2_41_LEFT_0 1 + CAAGAGATGGTTGTGTTCCCTTGAA +MN908947.3 12794 12819 SARS-CoV-2_41_RIGHT_0 1 - AACAGTGCAAGTACAAACCTACCTC +MN908947.3 12752 12774 SARS-CoV-2_42_LEFT_0 2 + GCACTGATGACAATGCGTTAGC +MN908947.3 13121 13146 SARS-CoV-2_42_RIGHT_0 2 - CAATTAGTGATTGGTTGTCCCCCAC +MN908947.3 13075 13099 SARS-CoV-2_43_LEFT_0 1 + GCTTTTGCTGTAGATGCTGCTAAA +MN908947.3 13458 13480 SARS-CoV-2_43_RIGHT_0 1 - CACCGCAAACCCGTTTAAAAAC +MN908947.3 13415 13435 SARS-CoV-2_44_LEFT_0 2 + ATCAACTCCGCGAACCCATG +MN908947.3 13787 13815 SARS-CoV-2_44_RIGHT_0 2 - TGCCATTGTGTATTTAGTAAGACGTTGA +MN908947.3 13738 13767 SARS-CoV-2_45_LEFT_0 1 + ACTTCTTTAAGTTTAGAATAGACGGTGAC +MN908947.3 14120 14144 SARS-CoV-2_45_RIGHT_0 1 - TCTACAACAGGAACTCCACTACCT +MN908947.3 14073 14100 SARS-CoV-2_46_LEFT_0 2 + CTCAATGGTAACTGGTATGATTTCGGT +MN908947.3 14427 14457 SARS-CoV-2_46_RIGHT_0 2 - TGGAACACCATCAACAAATATTTTTCTCAC +MN908947.3 14375 14407 SARS-CoV-2_47_LEFT_0 1 + CTTTAATGTTTTATTCTCTACAGTGTTCCCAC +MN908947.3 14745 14775 SARS-CoV-2_47_RIGHT_0 1 - ATCCTGAGCAAAGAAGAAGTGTTTTAATTC +MN908947.3 14700 14725 SARS-CoV-2_48_LEFT_0 2 + GACTTTGCTGTGTCTAAGGGTTTCT +MN908947.3 15065 15095 SARS-CoV-2_48_RIGHT_0 2 - TTCTTTGCACTAATGGCATACTTAAGATTC +MN908947.3 15016 15045 SARS-CoV-2_49_LEFT_0 1 + CACTTTTCGCATATACAAAACGTAATGTC +MN908947.3 15386 15416 SARS-CoV-2_49_RIGHT_0 1 - CACTCATTAGCTAATCTATAGAAACGGTGT +MN908947.3 15342 15366 SARS-CoV-2_50_LEFT_0 2 + TCACTTGTTCTTGCTCGCAAACAT +MN908947.3 15716 15742 SARS-CoV-2_50_RIGHT_0 2 - TATTGAAACACACAACAGCATCGTCA +MN908947.3 15659 15688 SARS-CoV-2_51_LEFT_0 1 + CTTTGTGAATGAGTTTTACGCATATTTGC +MN908947.3 16028 16059 SARS-CoV-2_51_RIGHT_0 1 - AGGATGTTTAGTAAGTGGGTAAGCATCTATA +MN908947.3 15992 16018 SARS-CoV-2_52_LEFT_2 2 + TGGTACACTTATGATTGAACGGTTCG +MN908947.3 16386 16409 SARS-CoV-2_52_RIGHT_2 2 - GTGACATCACAACCTGGAGCATT +MN908947.3 16285 16311 SARS-CoV-2_53_LEFT_0 1 + GTGCTTGCATACGTAGACCATTCTTA +MN908947.3 16650 16679 SARS-CoV-2_53_RIGHT_0 1 - GACAGTTTAAATGTCTCCTCAGTAGCTTT +MN908947.3 16624 16647 SARS-CoV-2_54_LEFT_1 2 + TCAAGCTTTTTGCAGCAGAAACG +MN908947.3 17004 17033 SARS-CoV-2_54_RIGHT_1 2 - ACATTGCTAGAAAACTCATCTGAGATATT +MN908947.3 16962 16994 SARS-CoV-2_55_LEFT_1 1 + CAAGAGCACTATGTTAGAATTACTGGCTTATA +MN908947.3 17333 17362 SARS-CoV-2_55_RIGHT_1 1 - TTTCATCAAAGACAACTATATCTGCTGTC +MN908947.3 17182 17212 SARS-CoV-2_56_LEFT_0 2 + CACTATGTGAGAAGGCATTAAAATATTTGC +MN908947.3 17560 17582 SARS-CoV-2_56_RIGHT_0 2 - ACAATTTCAGCAGGACAACGCC +MN908947.3 17478 17507 SARS-CoV-2_57_LEFT_0 1 + GGCACACTAGAACCAGAATATTTCAATTC +MN908947.3 17859 17886 SARS-CoV-2_57_RIGHT_0 1 - AGTGGTTTGAGTGAATATGACATAGTC +MN908947.3 17813 17839 SARS-CoV-2_58_LEFT_0 2 + GGGACTACCAACTCAAACTGTTGATT +MN908947.3 18181 18212 SARS-CoV-2_58_RIGHT_0 2 - ATCATAGAGATGAGTCTTCTATAGGTCATGT +MN908947.3 18121 18153 SARS-CoV-2_59_LEFT_0 1 + GTGTTGACACTAAATTCAAAACTGAAGGTTTA +MN908947.3 18504 18527 SARS-CoV-2_59_RIGHT_0 1 - CGCACTACATTCCAAGGAAGTCC +MN908947.3 18460 18484 SARS-CoV-2_60_LEFT_0 2 + CGCCTGGAGATCAATTTAAACACC +MN908947.3 18835 18860 SARS-CoV-2_60_RIGHT_0 2 - GCATCACAACTAGCTACATGTGCAT +MN908947.3 18789 18815 SARS-CoV-2_61_LEFT_0 1 + GGTAACCTACAAAGCAACCATGATCT +MN908947.3 19170 19195 SARS-CoV-2_61_RIGHT_0 1 - TCCAAAATAGGCATACACCATCTGT +MN908947.3 19087 19112 SARS-CoV-2_62_LEFT_2 2 + TCTATGATGCACAGCCTTGTAGTGA +MN908947.3 19469 19495 SARS-CoV-2_62_RIGHT_0 2 - GTCTACAGACAGCACCACCTAAATTG +MN908947.3 19415 19449 SARS-CoV-2_63_LEFT_0 1 + AGTGTCAGATATAGATTATGTACCACTAAAGTCT +MN908947.3 19770 19796 SARS-CoV-2_63_RIGHT_0 1 - GCCCAAAGCTCAAATGCTACATTAAC +MN908947.3 19721 19750 SARS-CoV-2_64_LEFT_0 2 + AGTTGATGGTGTTGATGTAGAATTGTTTG +MN908947.3 20091 20121 SARS-CoV-2_64_RIGHT_0 2 - TAATGTGACTCCATTAAGACTAGCTTGTTT +MN908947.3 20028 20054 SARS-CoV-2_65_LEFT_0 1 + GCCCGTAATGGTGTTCTTATTACAGA +MN908947.3 20408 20441 SARS-CoV-2_65_RIGHT_0 1 - GTACTGTCCATAGGAATAAAATCTTCTAATTCA +MN908947.3 20358 20388 SARS-CoV-2_66_LEFT_0 2 + GGTTTACATCTACTGATTGGACTAGCTAAA +MN908947.3 20729 20758 SARS-CoV-2_66_RIGHT_0 2 - CACTATCACCATAATTTTGAAGGTCACAC +MN908947.3 20650 20676 SARS-CoV-2_67_LEFT_1 1 + AATTACAATCTAGTCAAGCGTGGCAA +MN908947.3 21018 21051 SARS-CoV-2_67_RIGHT_1 1 - CATATCACTAATAATGAGATCCCATTTATTAGC +MN908947.3 20991 21018 SARS-CoV-2_68_LEFT_0 2 + ATTGGTGATTGTGCAACTGTACATACA +MN908947.3 21372 21402 SARS-CoV-2_68_RIGHT_0 2 - ACTCATGTCAAATAAAGAATAGGAAGACAA +MN908947.3 21322 21352 SARS-CoV-2_69_LEFT_0 1 + ATGTCATGCATGCAAATTACATATTTTGGA +MN908947.3 21696 21722 SARS-CoV-2_69_RIGHT_0 1 - AGTCCTGAGTTGAATGTAAAACTGAG +MN908947.3 21579 21607 SARS-CoV-2_70_LEFT_0 2 + TTTATTGCCACTAGTCTCTAGTCAGTGT +MN908947.3 21927 21960 SARS-CoV-2_70_RIGHT_0 2 - AATTCACAGACTTTAATAACAACATTAGTAGCG +MN908947.3 21866 21894 SARS-CoV-2_71_LEFT_0 1 + GAGGCTGGATTTTTGGTACTACTTTAGA +MN908947.3 22238 22266 SARS-CoV-2_71_RIGHT_0 1 - ATGTTAATACCTATTGGCAAATCTACCA +MN908947.3 22156 22189 SARS-CoV-2_72_LEFT_0 2 + GGTTATTTTAAAATATATTCTAAGCACACGCCT +MN908947.3 22517 22547 SARS-CoV-2_72_RIGHT_0 2 - ATCTAACAATAGATTCTGTTGGTTGGACTC +MN908947.3 22466 22494 SARS-CoV-2_73_LEFT_0 1 + CGTTGAAATCCTTCACTGTAGAAAAAGG +MN908947.3 22839 22866 SARS-CoV-2_73_RIGHT_0 1 - GCTATAACGCAGCCTGTAAAATCATCT +MN908947.3 22742 22774 SARS-CoV-2_74_LEFT_0 2 + ATGTCTATGCAGATTCATTTGTAATTAGAGGT +MN908947.3 23119 23140 SARS-CoV-2_74_RIGHT_0 2 - TCCACAAACAGTTGCTGGTGC +MN908947.3 23078 23109 SARS-CoV-2_75_LEFT_1 1 + AACCATACAGAGTAGTAGTACTTTCTTTTGA +MN908947.3 23452 23478 SARS-CoV-2_75_RIGHT_1 1 - CCTGTAGAATAAACACGCCAAGTAGG +MN908947.3 23229 23258 SARS-CoV-2_76_LEFT_0 2 + CAAAAAGTTTCTGCCTTTCCAACAATTTG +MN908947.3 23609 23631 SARS-CoV-2_76_RIGHT_0 2 - TGACTAGCTACACTACGTGCCC +MN908947.3 23563 23589 SARS-CoV-2_77_LEFT_0 1 + GCAGGTATATGCGCTAGTTATCAGAC +MN908947.3 23914 23944 SARS-CoV-2_77_RIGHT_0 1 - AATTGGTGGTGTTTTGTAAATTTGTTTGAC +MN908947.3 23823 23853 SARS-CoV-2_78_LEFT_0 2 + GCAATATGGCAGTTTTTGTACACAATTAAA +MN908947.3 24209 24231 SARS-CoV-2_78_RIGHT_0 2 - GCACCAAAGGTCCAACCAGAAG +MN908947.3 24160 24189 SARS-CoV-2_79_LEFT_0 1 + GATGAAATGATTGCTCAATACACTTCTGC +MN908947.3 24535 24560 SARS-CoV-2_79_RIGHT_0 1 - TGCCTGTGATCAACCTATCAATTTG +MN908947.3 24442 24468 SARS-CoV-2_80_LEFT_0 2 + ACGCTTGTTAAACAACTTAGCTCCAA +MN908947.3 24815 24839 SARS-CoV-2_80_RIGHT_0 2 - CTTCACGAGGAAAGTGTGCTTTTC +MN908947.3 24751 24774 SARS-CoV-2_81_LEFT_0 1 + CATGTGACTTATGTCCCTGCACA +MN908947.3 25120 25151 SARS-CoV-2_81_RIGHT_0 1 - GAGATTCATTTAAATTCTTGGCAACCTCATT +MN908947.3 25053 25082 SARS-CoV-2_82_LEFT_0 2 + TGATTTAGGTGACATCTCTGGCATTAATG +MN908947.3 25423 25452 SARS-CoV-2_82_RIGHT_0 2 - GATTTCACCTTGCTTCAAAGTTACAGTTC +MN908947.3 25372 25402 SARS-CoV-2_83_LEFT_0 1 + CATTACACATAAACGAACTTATGGATTTGT +MN908947.3 25744 25777 SARS-CoV-2_83_RIGHT_0 1 - GCCAAAGCCTCATTATTATTCTTACAAAGTTTA +MN908947.3 25653 25680 SARS-CoV-2_84_LEFT_2 2 + GTAACAGTTTACTCACACCTTTTGCTC +MN908947.3 26048 26072 SARS-CoV-2_84_RIGHT_2 2 - TGTTCAACACCARTGTCTGTACTC +MN908947.3 26011 26039 SARS-CoV-2_85_LEFT_0 1 + TCACTTCAGACTATTACCAGCTGTACTC +MN908947.3 26382 26411 SARS-CoV-2_85_RIGHT_0 1 - AAAGAAGGTTTTACAAGACTCACGTTAAC +MN908947.3 26339 26362 SARS-CoV-2_86_LEFT_0 2 + CATCCTTACTGCGCTTCGATTGT +MN908947.3 26730 26756 SARS-CoV-2_86_RIGHT_0 2 - ACCGGTGATCCAATTTATTCTGTAAA +MN908947.3 26593 26621 SARS-CoV-2_87_LEFT_1 1 + AGGTTTCCTATTCCTTACATGGATTTGT +MN908947.3 26989 27009 SARS-CoV-2_87_RIGHT_1 1 - CCTTGATGTCACAGCGTCCT +MN908947.3 26958 26981 SARS-CoV-2_88_LEFT_2 2 + GTGGACATCTTCGTATTGCTGGA +MN908947.3 27349 27376 SARS-CoV-2_88_RIGHT_2 2 - CCATTGGTTGCTCTTCATCTAATTGAG +MN908947.3 27200 27226 SARS-CoV-2_89_LEFT_2 1 + GATGTTTCATCTCGTTGACTTTCAGG +MN908947.3 27583 27603 SARS-CoV-2_89_RIGHT_0 1 - GCCGTCAGGACAAGCAAAAG +MN908947.3 27530 27558 SARS-CoV-2_90_LEFT_0 2 + TCATCCTCTAGCTGATAACAAATTTGCA +MN908947.3 27927 27950 SARS-CoV-2_90_RIGHT_0 2 - TTCTTGGTGAAATGCAGCTACAG +MN908947.3 27832 27860 SARS-CoV-2_91_LEFT_0 1 + TATCTTTTGGTTCTCACTTGAACTGCAA +MN908947.3 28209 28237 SARS-CoV-2_91_RIGHT_0 1 - CGAACGTCATGATACTCTAAAAAGTCTT +MN908947.3 28135 28166 SARS-CoV-2_92_LEFT_0 2 + TTCCTGTTTACCTTTTACAATTAATTGCCAG +MN908947.3 28513 28539 SARS-CoV-2_92_RIGHT_0 2 - CTTCGGTAGTAGCCAATTTGGTCATC +MN908947.3 28473 28493 SARS-CoV-2_93_LEFT_0 1 + TCGAGGACAAGGCGTTCCAA +MN908947.3 28849 28873 SARS-CoV-2_93_RIGHT_0 1 - GCCTGGAGTTGAATTTCTTGAACT +MN908947.3 28808 28829 SARS-CoV-2_94_LEFT_0 2 + GCAGTCAAGCCTCTTCTCGTT +MN908947.3 29203 29224 SARS-CoV-2_94_RIGHT_0 2 - CATTCCGAAGAACGCTGAAGC +MN908947.3 29159 29183 SARS-CoV-2_95_LEFT_0 1 + CTGATTACAAACATTGGCCGCAAA +MN908947.3 29538 29559 SARS-CoV-2_95_RIGHT_0 1 - ATCTGCCTTGTGTGGTCTGCA +MN908947.3 29462 29486 SARS-CoV-2_96_LEFT_1 2 + CTGCAGATTTGGATGATTTCTCCA +MN908947.3 29840 29873 SARS-CoV-2_96_RIGHT_0 2 - TTTGTCATTCTCCTAAGAAGCTATTAAAATCAC diff --git a/schemes/sars-cov-2/artic/400/v5.4.2/primer.svg b/schemes/sars-cov-2/artic/400/v5.4.2/primer.svg new file mode 100644 index 0000000..e8fe2d2 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.4.2/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/artic/v5.2.0_400/reference.fasta b/schemes/sars-cov-2/artic/400/v5.4.2/reference.fasta similarity index 100% rename from sars-cov-2/artic/v5.2.0_400/reference.fasta rename to schemes/sars-cov-2/artic/400/v5.4.2/reference.fasta diff --git a/schemes/sars-cov-2/artic/400/v5.4.2/scheme.bed b/schemes/sars-cov-2/artic/400/v5.4.2/scheme.bed new file mode 100644 index 0000000..c108bf8 --- /dev/null +++ b/schemes/sars-cov-2/artic/400/v5.4.2/scheme.bed @@ -0,0 +1,192 @@ +MN908947.3 47 78 SARS-CoV-2_1_LEFT_1 1 + +MN908947.3 419 447 SARS-CoV-2_1_RIGHT_1 1 - +MN908947.3 344 366 SARS-CoV-2_2_LEFT_0 2 + +MN908947.3 707 732 SARS-CoV-2_2_RIGHT_0 2 - +MN908947.3 638 661 SARS-CoV-2_3_LEFT_1 1 + +MN908947.3 1018 1047 SARS-CoV-2_3_RIGHT_0 1 - +MN908947.3 970 995 SARS-CoV-2_4_LEFT_0 2 + +MN908947.3 1340 1370 SARS-CoV-2_4_RIGHT_0 2 - +MN908947.3 1292 1320 SARS-CoV-2_5_LEFT_0 1 + +MN908947.3 1660 1692 SARS-CoV-2_5_RIGHT_0 1 - +MN908947.3 1574 1596 SARS-CoV-2_6_LEFT_1 2 + +MN908947.3 1945 1972 SARS-CoV-2_6_RIGHT_1 2 - +MN908947.3 1882 1905 SARS-CoV-2_7_LEFT_2 1 + +MN908947.3 2259 2284 SARS-CoV-2_7_RIGHT_2 1 - +MN908947.3 2229 2252 SARS-CoV-2_8_LEFT_0 2 + +MN908947.3 2603 2629 SARS-CoV-2_8_RIGHT_0 2 - +MN908947.3 2533 2563 SARS-CoV-2_9_LEFT_0 1 + +MN908947.3 2900 2933 SARS-CoV-2_9_RIGHT_0 1 - +MN908947.3 2854 2880 SARS-CoV-2_10_LEFT_0 2 + +MN908947.3 3233 3254 SARS-CoV-2_10_RIGHT_0 2 - +MN908947.3 3184 3213 SARS-CoV-2_11_LEFT_0 1 + +MN908947.3 3560 3584 SARS-CoV-2_11_RIGHT_0 1 - +MN908947.3 3510 3540 SARS-CoV-2_12_LEFT_0 2 + +MN908947.3 3883 3913 SARS-CoV-2_12_RIGHT_0 2 - +MN908947.3 3791 3824 SARS-CoV-2_13_LEFT_0 1 + +MN908947.3 4147 4180 SARS-CoV-2_13_RIGHT_0 1 - +MN908947.3 4079 4108 SARS-CoV-2_14_LEFT_0 2 + +MN908947.3 4457 4488 SARS-CoV-2_14_RIGHT_0 2 - +MN908947.3 4403 4425 SARS-CoV-2_15_LEFT_0 1 + +MN908947.3 4776 4803 SARS-CoV-2_15_RIGHT_0 1 - +MN908947.3 4723 4756 SARS-CoV-2_16_LEFT_0 2 + +MN908947.3 5089 5119 SARS-CoV-2_16_RIGHT_0 2 - +MN908947.3 5036 5063 SARS-CoV-2_17_LEFT_0 1 + +MN908947.3 5398 5429 SARS-CoV-2_17_RIGHT_0 1 - +MN908947.3 5344 5370 SARS-CoV-2_18_LEFT_0 2 + +MN908947.3 5716 5744 SARS-CoV-2_18_RIGHT_0 2 - +MN908947.3 5671 5696 SARS-CoV-2_19_LEFT_0 1 + +MN908947.3 6031 6062 SARS-CoV-2_19_RIGHT_0 1 - +MN908947.3 5891 5923 SARS-CoV-2_20_LEFT_0 2 + +MN908947.3 6257 6288 SARS-CoV-2_20_RIGHT_0 2 - +MN908947.3 6204 6237 SARS-CoV-2_21_LEFT_0 1 + +MN908947.3 6562 6595 SARS-CoV-2_21_RIGHT_0 1 - +MN908947.3 6515 6542 SARS-CoV-2_22_LEFT_0 2 + +MN908947.3 6882 6915 SARS-CoV-2_22_RIGHT_0 2 - +MN908947.3 6823 6854 SARS-CoV-2_23_LEFT_0 1 + +MN908947.3 7199 7229 SARS-CoV-2_23_RIGHT_0 1 - +MN908947.3 7145 7179 SARS-CoV-2_24_LEFT_0 2 + +MN908947.3 7518 7545 SARS-CoV-2_24_RIGHT_0 2 - +MN908947.3 7456 7482 SARS-CoV-2_25_LEFT_0 1 + +MN908947.3 7819 7850 SARS-CoV-2_25_RIGHT_0 1 - +MN908947.3 7768 7797 SARS-CoV-2_26_LEFT_0 2 + +MN908947.3 8136 8169 SARS-CoV-2_26_RIGHT_0 2 - +MN908947.3 8085 8112 SARS-CoV-2_27_LEFT_0 1 + +MN908947.3 8468 8498 SARS-CoV-2_27_RIGHT_0 1 - +MN908947.3 8406 8436 SARS-CoV-2_28_LEFT_0 2 + +MN908947.3 8781 8806 SARS-CoV-2_28_RIGHT_0 2 - +MN908947.3 8732 8761 SARS-CoV-2_29_LEFT_0 1 + +MN908947.3 9107 9129 SARS-CoV-2_29_RIGHT_0 1 - +MN908947.3 9023 9052 SARS-CoV-2_30_LEFT_0 2 + +MN908947.3 9397 9423 SARS-CoV-2_30_RIGHT_0 2 - +MN908947.3 9299 9324 SARS-CoV-2_31_LEFT_1 1 + +MN908947.3 9673 9706 SARS-CoV-2_31_RIGHT_0 1 - +MN908947.3 9571 9604 SARS-CoV-2_32_LEFT_0 2 + +MN908947.3 9949 9971 SARS-CoV-2_32_RIGHT_0 2 - +MN908947.3 9896 9929 SARS-CoV-2_33_LEFT_0 1 + +MN908947.3 10266 10295 SARS-CoV-2_33_RIGHT_0 1 - +MN908947.3 10215 10245 SARS-CoV-2_34_LEFT_0 2 + +MN908947.3 10587 10615 SARS-CoV-2_34_RIGHT_0 2 - +MN908947.3 10527 10557 SARS-CoV-2_35_LEFT_0 1 + +MN908947.3 10897 10927 SARS-CoV-2_35_RIGHT_0 1 - +MN908947.3 10832 10865 SARS-CoV-2_36_LEFT_0 2 + +MN908947.3 11201 11232 SARS-CoV-2_36_RIGHT_0 2 - +MN908947.3 11152 11181 SARS-CoV-2_37_LEFT_0 1 + +MN908947.3 11514 11536 SARS-CoV-2_37_RIGHT_0 1 - +MN908947.3 11463 11494 SARS-CoV-2_38_LEFT_0 2 + +MN908947.3 11832 11863 SARS-CoV-2_38_RIGHT_0 2 - +MN908947.3 11785 11811 SARS-CoV-2_39_LEFT_0 1 + +MN908947.3 12161 12185 SARS-CoV-2_39_RIGHT_0 1 - +MN908947.3 12112 12137 SARS-CoV-2_40_LEFT_0 2 + +MN908947.3 12477 12510 SARS-CoV-2_40_RIGHT_0 2 - +MN908947.3 12419 12444 SARS-CoV-2_41_LEFT_0 1 + +MN908947.3 12794 12819 SARS-CoV-2_41_RIGHT_0 1 - +MN908947.3 12752 12774 SARS-CoV-2_42_LEFT_0 2 + +MN908947.3 13121 13146 SARS-CoV-2_42_RIGHT_0 2 - +MN908947.3 13075 13099 SARS-CoV-2_43_LEFT_0 1 + +MN908947.3 13458 13480 SARS-CoV-2_43_RIGHT_0 1 - +MN908947.3 13415 13435 SARS-CoV-2_44_LEFT_0 2 + +MN908947.3 13787 13815 SARS-CoV-2_44_RIGHT_0 2 - +MN908947.3 13738 13767 SARS-CoV-2_45_LEFT_0 1 + +MN908947.3 14120 14144 SARS-CoV-2_45_RIGHT_0 1 - +MN908947.3 14073 14100 SARS-CoV-2_46_LEFT_0 2 + +MN908947.3 14427 14457 SARS-CoV-2_46_RIGHT_0 2 - +MN908947.3 14375 14407 SARS-CoV-2_47_LEFT_0 1 + +MN908947.3 14745 14775 SARS-CoV-2_47_RIGHT_0 1 - +MN908947.3 14700 14725 SARS-CoV-2_48_LEFT_0 2 + +MN908947.3 15065 15095 SARS-CoV-2_48_RIGHT_0 2 - +MN908947.3 15016 15045 SARS-CoV-2_49_LEFT_0 1 + +MN908947.3 15386 15416 SARS-CoV-2_49_RIGHT_0 1 - +MN908947.3 15342 15366 SARS-CoV-2_50_LEFT_0 2 + +MN908947.3 15716 15742 SARS-CoV-2_50_RIGHT_0 2 - +MN908947.3 15659 15688 SARS-CoV-2_51_LEFT_0 1 + +MN908947.3 16028 16059 SARS-CoV-2_51_RIGHT_0 1 - +MN908947.3 15992 16018 SARS-CoV-2_52_LEFT_2 2 + +MN908947.3 16386 16409 SARS-CoV-2_52_RIGHT_2 2 - +MN908947.3 16285 16311 SARS-CoV-2_53_LEFT_0 1 + +MN908947.3 16650 16679 SARS-CoV-2_53_RIGHT_0 1 - +MN908947.3 16624 16647 SARS-CoV-2_54_LEFT_1 2 + +MN908947.3 17004 17033 SARS-CoV-2_54_RIGHT_1 2 - +MN908947.3 16962 16994 SARS-CoV-2_55_LEFT_1 1 + +MN908947.3 17333 17362 SARS-CoV-2_55_RIGHT_1 1 - +MN908947.3 17182 17212 SARS-CoV-2_56_LEFT_0 2 + +MN908947.3 17560 17582 SARS-CoV-2_56_RIGHT_0 2 - +MN908947.3 17478 17507 SARS-CoV-2_57_LEFT_0 1 + +MN908947.3 17859 17886 SARS-CoV-2_57_RIGHT_0 1 - +MN908947.3 17813 17839 SARS-CoV-2_58_LEFT_0 2 + +MN908947.3 18181 18212 SARS-CoV-2_58_RIGHT_0 2 - +MN908947.3 18121 18153 SARS-CoV-2_59_LEFT_0 1 + +MN908947.3 18504 18527 SARS-CoV-2_59_RIGHT_0 1 - +MN908947.3 18460 18484 SARS-CoV-2_60_LEFT_0 2 + +MN908947.3 18835 18860 SARS-CoV-2_60_RIGHT_0 2 - +MN908947.3 18789 18815 SARS-CoV-2_61_LEFT_0 1 + +MN908947.3 19170 19195 SARS-CoV-2_61_RIGHT_0 1 - +MN908947.3 19087 19112 SARS-CoV-2_62_LEFT_2 2 + +MN908947.3 19469 19495 SARS-CoV-2_62_RIGHT_0 2 - +MN908947.3 19415 19449 SARS-CoV-2_63_LEFT_0 1 + +MN908947.3 19770 19796 SARS-CoV-2_63_RIGHT_0 1 - +MN908947.3 19721 19750 SARS-CoV-2_64_LEFT_0 2 + +MN908947.3 20091 20121 SARS-CoV-2_64_RIGHT_0 2 - +MN908947.3 20028 20054 SARS-CoV-2_65_LEFT_0 1 + +MN908947.3 20408 20441 SARS-CoV-2_65_RIGHT_0 1 - +MN908947.3 20358 20388 SARS-CoV-2_66_LEFT_0 2 + +MN908947.3 20729 20758 SARS-CoV-2_66_RIGHT_0 2 - +MN908947.3 20650 20676 SARS-CoV-2_67_LEFT_1 1 + +MN908947.3 21018 21051 SARS-CoV-2_67_RIGHT_1 1 - +MN908947.3 20991 21018 SARS-CoV-2_68_LEFT_0 2 + +MN908947.3 21372 21402 SARS-CoV-2_68_RIGHT_0 2 - +MN908947.3 21322 21352 SARS-CoV-2_69_LEFT_0 1 + +MN908947.3 21696 21722 SARS-CoV-2_69_RIGHT_0 1 - +MN908947.3 21579 21607 SARS-CoV-2_70_LEFT_0 2 + +MN908947.3 21927 21960 SARS-CoV-2_70_RIGHT_0 2 - +MN908947.3 21866 21894 SARS-CoV-2_71_LEFT_0 1 + +MN908947.3 22238 22266 SARS-CoV-2_71_RIGHT_0 1 - +MN908947.3 22156 22189 SARS-CoV-2_72_LEFT_0 2 + +MN908947.3 22517 22547 SARS-CoV-2_72_RIGHT_0 2 - +MN908947.3 22466 22494 SARS-CoV-2_73_LEFT_0 1 + +MN908947.3 22839 22866 SARS-CoV-2_73_RIGHT_0 1 - +MN908947.3 22742 22774 SARS-CoV-2_74_LEFT_0 2 + +MN908947.3 23119 23140 SARS-CoV-2_74_RIGHT_0 2 - +MN908947.3 23078 23109 SARS-CoV-2_75_LEFT_1 1 + +MN908947.3 23452 23478 SARS-CoV-2_75_RIGHT_1 1 - +MN908947.3 23229 23258 SARS-CoV-2_76_LEFT_0 2 + +MN908947.3 23609 23631 SARS-CoV-2_76_RIGHT_0 2 - +MN908947.3 23563 23589 SARS-CoV-2_77_LEFT_0 1 + +MN908947.3 23914 23944 SARS-CoV-2_77_RIGHT_0 1 - +MN908947.3 23823 23853 SARS-CoV-2_78_LEFT_0 2 + +MN908947.3 24209 24231 SARS-CoV-2_78_RIGHT_0 2 - +MN908947.3 24160 24189 SARS-CoV-2_79_LEFT_0 1 + +MN908947.3 24535 24560 SARS-CoV-2_79_RIGHT_0 1 - +MN908947.3 24442 24468 SARS-CoV-2_80_LEFT_0 2 + +MN908947.3 24815 24839 SARS-CoV-2_80_RIGHT_0 2 - +MN908947.3 24751 24774 SARS-CoV-2_81_LEFT_0 1 + +MN908947.3 25120 25151 SARS-CoV-2_81_RIGHT_0 1 - +MN908947.3 25053 25082 SARS-CoV-2_82_LEFT_0 2 + +MN908947.3 25423 25452 SARS-CoV-2_82_RIGHT_0 2 - +MN908947.3 25372 25402 SARS-CoV-2_83_LEFT_0 1 + +MN908947.3 25744 25777 SARS-CoV-2_83_RIGHT_0 1 - +MN908947.3 25653 25680 SARS-CoV-2_84_LEFT_2 2 + +MN908947.3 26048 26072 SARS-CoV-2_84_RIGHT_2 2 - +MN908947.3 26011 26039 SARS-CoV-2_85_LEFT_0 1 + +MN908947.3 26382 26411 SARS-CoV-2_85_RIGHT_0 1 - +MN908947.3 26339 26362 SARS-CoV-2_86_LEFT_0 2 + +MN908947.3 26730 26756 SARS-CoV-2_86_RIGHT_0 2 - +MN908947.3 26593 26621 SARS-CoV-2_87_LEFT_1 1 + +MN908947.3 26989 27009 SARS-CoV-2_87_RIGHT_1 1 - +MN908947.3 26958 26981 SARS-CoV-2_88_LEFT_2 2 + +MN908947.3 27349 27376 SARS-CoV-2_88_RIGHT_2 2 - +MN908947.3 27200 27226 SARS-CoV-2_89_LEFT_2 1 + +MN908947.3 27583 27603 SARS-CoV-2_89_RIGHT_0 1 - +MN908947.3 27530 27558 SARS-CoV-2_90_LEFT_0 2 + +MN908947.3 27927 27950 SARS-CoV-2_90_RIGHT_0 2 - +MN908947.3 27832 27860 SARS-CoV-2_91_LEFT_0 1 + +MN908947.3 28209 28237 SARS-CoV-2_91_RIGHT_0 1 - +MN908947.3 28135 28166 SARS-CoV-2_92_LEFT_0 2 + +MN908947.3 28513 28539 SARS-CoV-2_92_RIGHT_0 2 - +MN908947.3 28473 28493 SARS-CoV-2_93_LEFT_0 1 + +MN908947.3 28849 28873 SARS-CoV-2_93_RIGHT_0 1 - +MN908947.3 28808 28829 SARS-CoV-2_94_LEFT_0 2 + +MN908947.3 29203 29224 SARS-CoV-2_94_RIGHT_0 2 - +MN908947.3 29159 29183 SARS-CoV-2_95_LEFT_0 1 + +MN908947.3 29538 29559 SARS-CoV-2_95_RIGHT_0 1 - +MN908947.3 29462 29486 SARS-CoV-2_96_LEFT_1 2 + +MN908947.3 29840 29873 SARS-CoV-2_96_RIGHT_0 2 - diff --git a/schemes/sars-cov-2/eden/2500/v1.0.0/info.yml b/schemes/sars-cov-2/eden/2500/v1.0.0/info.yml new file mode 100644 index 0000000..a2aac51 --- /dev/null +++ b/schemes/sars-cov-2/eden/2500/v1.0.0/info.yml @@ -0,0 +1,18 @@ +schema_version: 1.0.0a +name: eden +amplicon_size: 2500 +version: v1.0.0 +organism: sars-cov-2 +aliases: +- sydney +developers: +- John-Sebastian Eden +- Eby Sim +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/eden/v1 +citations: +- https://dx.doi.org/10.17504/protocols.io.befyjbpw +notes: +- Protocol includes addendum for ONT sequencing +license: CC-BY-4.0 +primer_checksum: primaschema:55c9726eb1400cab +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/eden/2500/v1.0.0/primer.bed b/schemes/sars-cov-2/eden/2500/v1.0.0/primer.bed new file mode 100644 index 0000000..8fee45a --- /dev/null +++ b/schemes/sars-cov-2/eden/2500/v1.0.0/primer.bed @@ -0,0 +1,28 @@ +MN908947.3 31 55 SARS2_1_LEFT_1 1 + CCAACCAACTTTCGATCTCTTGTA +MN908947.3 2569 2593 SARS2_1_RIGHT_1 1 - AGCTTCAACAGCTTCACTAGTAGG +MN908947.3 1876 1898 SARS2_2_LEFT_1 2 + TCAGAGGCTGCTCGTGTTGTAC +MN908947.3 4429 4451 SARS2_2_RIGHT_1 2 - TAGTTTCCACACAGACAGGCAT +MN908947.3 4295 4322 SARS2_3_LEFT_1 1 + CAGTGCTTAAAAAGTGTAAAAGTGCCT +MN908947.3 6847 6874 SARS2_3_RIGHT_1 1 - AACAGTATTCTTTGCTATAGTAGTCGG +MN908947.3 6287 6311 SARS2_4_LEFT_1 2 + GGTGTATACGTTGTCTTTGGAGCA +MN908947.3 8828 8852 SARS2_4_RIGHT_1 2 - CCACTTCTCTTGTTATGACTGCAG +MN908947.3 8596 8620 SARS2_5_LEFT_1 1 + CTTGTGTTCCTTTTTGTTGCTGCT +MN908947.3 11049 11075 SARS2_5_RIGHT_1 1 - AGAACAAAGACCATTGAGTACTCTGG +MN908947.3 10363 10385 SARS2_6_LEFT_1 2 + GTTCGCATTCAACCAGGACAGA +MN908947.3 12780 12803 SARS2_6_RIGHT_1 2 - ACCTACCTCCCTTTGTTGTGTTG +MN908947.3 12711 12733 SARS2_7_LEFT_1 1 + ACGACAGATGTCTTGTGCTGCC +MN908947.3 15225 15247 SARS2_7_RIGHT_1 1 - TTAACATGTTGTGCCAACCACC +MN908947.3 14546 14571 SARS2_8_LEFT_1 2 + GGAATTACTTGTGTATGCTGCTGAC +MN908947.3 17131 17153 SARS2_8_RIGHT_1 2 - TACACTATGCGAGCAGAAGGGT +MN908947.3 16847 16872 SARS2_9_LEFT_1 1 + CTATGGTGATGCTGTTGTTTACCGA +MN908947.3 19254 19279 SARS2_9_RIGHT_1 1 - AACCAGGCAAGTTAAGGTTAGATAG +MN908947.3 18897 18919 SARS2_10_LEFT_1 2 + GTTAAGCGTGTTGACTGGACTA +MN908947.3 21428 21456 SARS2_10_RIGHT_1 2 - TTGACCTTCTTTTAAAGACATAACAGCA +MN908947.3 21358 21387 SARS2_11_LEFT_1 1 + CAAATCCAATTCAGTTGTCTTCCTATTCT +MN908947.3 23823 23848 SARS2_11_RIGHT_1 1 - TTGTGTACAAAAACTGCCATATTGC +MN908947.3 23123 23145 SARS2_12_LEFT_1 2 + CAGCAACTGTTTGTGGACCTAA +MN908947.3 25647 25674 SARS2_12_RIGHT_1 2 - AAGGTGTGAGTAAACTGTTACAAACAA +MN908947.3 25602 25624 SARS2_13_LEFT_1 1 + CTAGCACTCTCCAAGGGTGTTC +MN908947.3 28146 28173 SARS2_13_RIGHT_1 1 - TAGGTTCCTGGCAATTAATTGTAAAAG +MN908947.3 27447 27472 SARS2_14_LEFT_1 2 + CACTACCAAGAGTGTGTTAGAGGTA +MN908947.3 29837 29867 SARS2_14_RIGHT_1 2 - ATTCTCCTAAGAAGCTATTAAAATCACATG diff --git a/schemes/sars-cov-2/eden/2500/v1.0.0/primer.svg b/schemes/sars-cov-2/eden/2500/v1.0.0/primer.svg new file mode 100644 index 0000000..3d07d0e --- /dev/null +++ b/schemes/sars-cov-2/eden/2500/v1.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/artic/v5.3.2_400/reference.fasta b/schemes/sars-cov-2/eden/2500/v1.0.0/reference.fasta similarity index 100% rename from sars-cov-2/artic/v5.3.2_400/reference.fasta rename to schemes/sars-cov-2/eden/2500/v1.0.0/reference.fasta diff --git a/schemes/sars-cov-2/eden/2500/v1.0.0/scheme.bed b/schemes/sars-cov-2/eden/2500/v1.0.0/scheme.bed new file mode 100644 index 0000000..e75e9b3 --- /dev/null +++ b/schemes/sars-cov-2/eden/2500/v1.0.0/scheme.bed @@ -0,0 +1,28 @@ +MN908947.3 31 55 SARS2_1_LEFT_1 1 + +MN908947.3 2569 2593 SARS2_1_RIGHT_1 1 - +MN908947.3 1876 1898 SARS2_2_LEFT_1 2 + +MN908947.3 4429 4451 SARS2_2_RIGHT_1 2 - +MN908947.3 4295 4322 SARS2_3_LEFT_1 1 + +MN908947.3 6847 6874 SARS2_3_RIGHT_1 1 - +MN908947.3 6287 6311 SARS2_4_LEFT_1 2 + +MN908947.3 8828 8852 SARS2_4_RIGHT_1 2 - +MN908947.3 8596 8620 SARS2_5_LEFT_1 1 + +MN908947.3 11049 11075 SARS2_5_RIGHT_1 1 - +MN908947.3 10363 10385 SARS2_6_LEFT_1 2 + +MN908947.3 12780 12803 SARS2_6_RIGHT_1 2 - +MN908947.3 12711 12733 SARS2_7_LEFT_1 1 + +MN908947.3 15225 15247 SARS2_7_RIGHT_1 1 - +MN908947.3 14546 14571 SARS2_8_LEFT_1 2 + +MN908947.3 17131 17153 SARS2_8_RIGHT_1 2 - +MN908947.3 16847 16872 SARS2_9_LEFT_1 1 + +MN908947.3 19254 19279 SARS2_9_RIGHT_1 1 - +MN908947.3 18897 18919 SARS2_10_LEFT_1 2 + +MN908947.3 21428 21456 SARS2_10_RIGHT_1 2 - +MN908947.3 21358 21387 SARS2_11_LEFT_1 1 + +MN908947.3 23823 23848 SARS2_11_RIGHT_1 1 - +MN908947.3 23123 23145 SARS2_12_LEFT_1 2 + +MN908947.3 25647 25674 SARS2_12_RIGHT_1 2 - +MN908947.3 25602 25624 SARS2_13_LEFT_1 1 + +MN908947.3 28146 28173 SARS2_13_RIGHT_1 1 - +MN908947.3 27447 27472 SARS2_14_LEFT_1 2 + +MN908947.3 29837 29867 SARS2_14_RIGHT_1 2 - diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/info.yml b/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/info.yml new file mode 100644 index 0000000..a3a838d --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/info.yml @@ -0,0 +1,19 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: midnight +amplicon_size: 1200 +version: bccdc-v1.0.0 +derived_from: midnight-v1 +developers: +- Nikki Freed +- Olin Silander +- John Tyson +- Tracy Lee +citations: +- https://dx.doi.org/10.17504/protocols.io.bwyppfvn +notes: +- Accomodates P.1 +license: CC-BY-4.0 +status: DEPRECATED +primer_checksum: primaschema:63730c2cad698b52 +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/primer.bed b/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/primer.bed new file mode 100644 index 0000000..1ca0541 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/primer.bed @@ -0,0 +1,61 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + ACCAACCAACTTTCGATCTCTTGT +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - GGTTGCATTCATTTGGTGACGC +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + CCATAATCAAGACTATTCAACCAAGGGT +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - ACAGGTGACAATTTGTCCACCG +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - GATTGTCCTCACTGCCGTCTTG +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + GGAATTTGGTGCCACTTCTGCT +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - CCTGACCCGGGTAAGTGGTTAT +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + ACCTACTAAAAAGGCTGGTGGC +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - AGCATCTTGTAGAGCAGGTGGA +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + ACTTCTATTAAATGGGCAGATAACAACTG +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - GATTATCCATTCCCTGCGCGTC +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + ACCTGGTGTATACGTTGTCTTTGG +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - GCTGAAATCGGGGCCATTTGTA +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - TGACTTTTTGCTACCTGCGCAT +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + AGAAGTTACTGGCGATAGTTGTAATAACT +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - TGCTGATATGTCCAAAGCACCA +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + TTTACCAGGAGTTTTCTGTGGTGT +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - TGGGCCTCATAGCACATTGGTA +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + AGACACCTAAGTATAAGTTTGTTCGCA +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - GCCCACATGGAAATGGCTTGAT +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + ATGGTGCTAGGAGAGTGTGGAC +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - GGATTTCCCACAATGCTGATGC +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + ACCTCTTACAACAGCAGCCAAAC +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - CGTCCTTTTCTTGGAAGCGACA +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + ACAGGCACTAGTACTGATGTCGT +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - GTGCAGCTACTGAAAAGCACGT +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + TTTTAAGGAATTACTTGTGTATGCTGCT +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - ACACACAACAGCATCGTCAGAG +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + ACAACACAGACTTTATGAGTGTCTCT +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - CTCTGTCAGACAGCACTTCACG +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + TCAAGCTTTTTGCAGCAGAAACG +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - CCAAGCAGGGTTACGTGTAAGG +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + GCACATAAAGACAAATCAGCTCAATGC +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - TGTCTGAAGCAGTGGAAAAGCA +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + GGCACATGGCTTTGAGTTGACA +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - CCTGTTGTCCATCAAAGTGTCCC +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + ACAATTTGATACTTATAACCTCTGGAACAC +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - GATTAGGCATAGCAACACCCGG +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_2 1 - GCAGAGGGTAATTGAGTTCTGT +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - GCAGGGGGTAATTGAGTTCTGG +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + GTGATGTTCTTGTTAACAACTAAACGAACA +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - AACAGATGCAAATCTGGTGGCG +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + ACTTTAGAGTCCAACCAACAGAATCT +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - TGACTAGCTACACTACGTGCCC +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + GCTGAACATGTCAACAACTCATATGA +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_2 2 + GCTGAATATGTCAACAACTCATATGA +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - ATGAGGTGCTGACTGAGGGAAG +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + TGCTGCTACTAAAATGTCAGAGTGT +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_2 1 + TGCTGCTATTAAAATGTCAGAGTGT +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - CATTTCCAGCAAAGCCAAAGCC +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + GCCTTGAAGCCCCTTTTCTCTA +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - AATGACCACATGGAACGCGTAC +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + TGGATCACCGGTGGAATTGCTA +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - TGTTCGTTTAGGCGTGACAAGT +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + TTTGTGCTTTTTAGCCTTTCTGCT +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - GTTTGGCCTTGTTGTTGTTGGC +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + TGAGGGAGCCTTGAATACACCA +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/primer.svg b/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/primer.svg new file mode 100644 index 0000000..3ac8457 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/midnight/bccdc-v1/reference.fasta b/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/reference.fasta similarity index 100% rename from sars-cov-2/midnight/bccdc-v1/reference.fasta rename to schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/reference.fasta diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/scheme.bed b/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/scheme.bed new file mode 100644 index 0000000..a5c5bef --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v1.0.0/scheme.bed @@ -0,0 +1,61 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_2 1 - +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_2 2 + +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_2 1 + +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/info.yml b/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/info.yml new file mode 100644 index 0000000..794c921 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/info.yml @@ -0,0 +1,19 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: midnight +amplicon_size: 1200 +version: bccdc-v2.0.0 +derived_from: bccdc-v1.0.0 +developers: +- Nikki Freed +- Olin Silander +- John Tyson +- Tracy Lee +citations: +- https://dx.doi.org/10.17504/protocols.io.bwyppfvn +notes: +- Accomodates BA.1 +license: CC-BY-4.0 +status: DEPRECATED +primer_checksum: primaschema:24946c8acfd9e9df +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/primer.bed b/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/primer.bed new file mode 100644 index 0000000..23e8111 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/primer.bed @@ -0,0 +1,63 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + ACCAACCAACTTTCGATCTCTTGT +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - GGTTGCATTCATTTGGTGACGC +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + CCATAATCAAGACTATTCAACCAAGGGT +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - ACAGGTGACAATTTGTCCACCG +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - GATTGTCCTCACTGCCGTCTTG +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + GGAATTTGGTGCCACTTCTGCT +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - CCTGACCCGGGTAAGTGGTTAT +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + ACCTACTAAAAAGGCTGGTGGC +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - AGCATCTTGTAGAGCAGGTGGA +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + ACTTCTATTAAATGGGCAGATAACAACTG +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - GATTATCCATTCCCTGCGCGTC +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + ACCTGGTGTATACGTTGTCTTTGG +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - GCTGAAATCGGGGCCATTTGTA +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - TGACTTTTTGCTACCTGCGCAT +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + AGAAGTTACTGGCGATAGTTGTAATAACT +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - TGCTGATATGTCCAAAGCACCA +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + TTTACCAGGAGTTTTCTGTGGTGT +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - TGGGCCTCATAGCACATTGGTA +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + AGACACCTAAGTATAAGTTTGTTCGCA +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - GCCCACATGGAAATGGCTTGAT +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + ATGGTGCTAGGAGAGTGTGGAC +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - GGATTTCCCACAATGCTGATGC +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + ACCTCTTACAACAGCAGCCAAAC +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - CGTCCTTTTCTTGGAAGCGACA +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + ACAGGCACTAGTACTGATGTCGT +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - GTGCAGCTACTGAAAAGCACGT +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + TTTTAAGGAATTACTTGTGTATGCTGCT +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - ACACACAACAGCATCGTCAGAG +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + ACAACACAGACTTTATGAGTGTCTCT +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - CTCTGTCAGACAGCACTTCACG +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + TCAAGCTTTTTGCAGCAGAAACG +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - CCAAGCAGGGTTACGTGTAAGG +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + GCACATAAAGACAAATCAGCTCAATGC +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - TGTCTGAAGCAGTGGAAAAGCA +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + GGCACATGGCTTTGAGTTGACA +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - CCTGTTGTCCATCAAAGTGTCCC +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + ACAATTTGATACTTATAACCTCTGGAACAC +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - GATTAGGCATAGCAACACCCGG +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_2 1 - GCAGAGGGTAATTGAGTTCTGT +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - GCAGGGGGTAATTGAGTTCTGG +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + GTGATGTTCTTGTTAACAACTAAACGAACA +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - AACAGATGCAAATCTGGTGGCG +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_2 2 - AACAGATGCAAATTTGGTGGCG +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + ACTTTAGAGTCCAACCAACAGAATCT +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - TGACTAGCTACACTACGTGCCC +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + GCTGAACATGTCAACAACTCATATGA +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_P.1 2 + GCTGAATATGTCAACAACTCATATGA +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - ATGAGGTGCTGACTGAGGGAAG +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + TGCTGCTACTAAAATGTCAGAGTGT +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_P.1 1 + TGCTGCTATTAAAATGTCAGAGTGT +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - CATTTCCAGCAAAGCCAAAGCC +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + GCCTTGAAGCCCCTTTTCTCTA +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - AATGACCACATGGAACGCGTAC +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + TGGATCACCGGTGGAATTGCTA +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - TGTTCGTTTAGGCGTGACAAGT +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + TTTGTGCTTTTTAGCCTTTCTGCT +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_2 2 + TTTGTGCTTTTTAGCCTTTCTGTT +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - GTTTGGCCTTGTTGTTGTTGGC +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + TGAGGGAGCCTTGAATACACCA +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/primer.svg b/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/primer.svg new file mode 100644 index 0000000..f602b5b --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/midnight/bccdc-v2/reference.fasta b/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/reference.fasta similarity index 100% rename from sars-cov-2/midnight/bccdc-v2/reference.fasta rename to schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/reference.fasta diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/scheme.bed b/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/scheme.bed new file mode 100644 index 0000000..d4c6e5a --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v2.0.0/scheme.bed @@ -0,0 +1,63 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_2 1 - +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_2 2 - +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_P.1 2 + +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_P.1 1 + +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_2 2 + +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/info.yml b/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/info.yml new file mode 100644 index 0000000..dd3a44f --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/info.yml @@ -0,0 +1,17 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: midnight +amplicon_size: 1200 +version: bccdc-v3.0.0 +derived_from: bccdc-v2.0.0 +developers: +- Nikki Freed +- Olin Silander +- John Tyson +- Tracy Lee +citations: +- https://dx.doi.org/10.17504/protocols.io.bwyppfvn +license: CC-BY-4.0 +status: DEPRECATED +primer_checksum: primaschema:76400a085952e90c +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/primer.bed b/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/primer.bed new file mode 100644 index 0000000..0b8e33b --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/primer.bed @@ -0,0 +1,65 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + ACCAACCAACTTTCGATCTCTTGT +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - GGTTGCATTCATTTGGTGACGC +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + CCATAATCAAGACTATTCAACCAAGGGT +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - ACAGGTGACAATTTGTCCACCG +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - GATTGTCCTCACTGCCGTCTTG +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + GGAATTTGGTGCCACTTCTGCT +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - CCTGACCCGGGTAAGTGGTTAT +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + ACCTACTAAAAAGGCTGGTGGC +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - AGCATCTTGTAGAGCAGGTGGA +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + ACTTCTATTAAATGGGCAGATAACAACTG +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - GATTATCCATTCCCTGCGCGTC +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + ACCTGGTGTATACGTTGTCTTTGG +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - GCTGAAATCGGGGCCATTTGTA +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - TGACTTTTTGCTACCTGCGCAT +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + AGAAGTTACTGGCGATAGTTGTAATAACT +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - TGCTGATATGTCCAAAGCACCA +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + TTTACCAGGAGTTTTCTGTGGTGT +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - TGGGCCTCATAGCACATTGGTA +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + AGACACCTAAGTATAAGTTTGTTCGCA +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - GCCCACATGGAAATGGCTTGAT +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + ATGGTGCTAGGAGAGTGTGGAC +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - GGATTTCCCACAATGCTGATGC +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + ACCTCTTACAACAGCAGCCAAAC +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - CGTCCTTTTCTTGGAAGCGACA +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + ACAGGCACTAGTACTGATGTCGT +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - GTGCAGCTACTGAAAAGCACGT +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + TTTTAAGGAATTACTTGTGTATGCTGCT +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - ACACACAACAGCATCGTCAGAG +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + ACAACACAGACTTTATGAGTGTCTCT +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - CTCTGTCAGACAGCACTTCACG +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + TCAAGCTTTTTGCAGCAGAAACG +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - CCAAGCAGGGTTACGTGTAAGG +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + GCACATAAAGACAAATCAGCTCAATGC +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - TGTCTGAAGCAGTGGAAAAGCA +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + GGCACATGGCTTTGAGTTGACA +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - CCTGTTGTCCATCAAAGTGTCCC +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + ACAATTTGATACTTATAACCTCTGGAACAC +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - GATTAGGCATAGCAACACCCGG +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - GCAGGGGGTAATTGAGTTCTGG +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_2 1 - GCAGaGGGTAATTGAGTTCTGT +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + GTGATGTTCTTGTTAACAACTAAACGAACA +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - AACAGATGCAAATCTGGTGGCG +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_2 2 - AACAGATGCAAATTTGGTGGCG +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + ACTTTAGAGTCCAACCAACAGAATCT +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_2 1 + ACTTTAGAGTTCAACCAACAGAATCT +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - TGACTAGCTACACTACGTGCCC +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + GCTGAACATGTCAACAACTCATATGA +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_2 2 + GCTGAATATGTCAACAACTCATATGA +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - ATGAGGTGCTGACTGAGGGAAG +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + TGCTGCTACTAAAATGTCAGAGTGT +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_2 1 + TGCTGCTATTAAAATGTCAGAGTGT +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - CATTTCCAGCAAAGCCAAAGCC +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + GCCTTGAAGCCCCTTTTCTCTA +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_2 2 + GCCTTGAAGCCCCTTTTTTCTA +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - AATGACCACATGGAACGCGTAC +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + TGGATCACCGGTGGAATTGCTA +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - TGTTCGTTTAGGCGTGACAAGT +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + TTTGTGCTTTTTAGCCTTTCTGCT +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_2 2 + TTTGTGCTTTTTAGCCTTTCTGTT +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - GTTTGGCCTTGTTGTTGTTGGC +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + TGAGGGAGCCTTGAATACACCA +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/primer.svg b/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/primer.svg new file mode 100644 index 0000000..a1497e1 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/midnight/bccdc-v3/reference.fasta b/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/reference.fasta similarity index 100% rename from sars-cov-2/midnight/bccdc-v3/reference.fasta rename to schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/reference.fasta diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/scheme.bed b/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/scheme.bed new file mode 100644 index 0000000..af5bbe0 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v3.0.0/scheme.bed @@ -0,0 +1,65 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_2 1 - +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_2 2 - +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_2 1 + +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_2 2 + +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_2 1 + +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_2 2 + +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_2 2 + +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/info.yml b/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/info.yml new file mode 100644 index 0000000..28868b9 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/info.yml @@ -0,0 +1,24 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: midnight +amplicon_size: 1200 +version: bccdc-v4.0.0 +aliases: +- midnight-idt-v2 +derived_from: bccdc-v3.0.0 +developers: +- Nikki Freed +- Olin Silander +- John Tyson +- Tracy Lee +citations: +- https://dx.doi.org/10.17504/protocols.io.bwyppfvn +notes: +- Accomodates Omicron BA.2 +- IDT calls this the "-Midnight-1200 Amplicon Panel" and "Midnight Amplicon Panel + v2" +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/bccdc-v4 +license: CC-BY-4.0 +status: DEPRECATED +primer_checksum: primaschema:fbdd06cb1617a6f9 +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/primer.bed b/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/primer.bed new file mode 100644 index 0000000..0d03028 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/primer.bed @@ -0,0 +1,63 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + ACCAACCAACTTTCGATCTCTTGT +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - GGTTGCATTCATTTGGTGACGC +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + CCATAATCAAGACTATTCAACCAAGGGT +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - ACAGGTGACAATTTGTCCACCG +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - GATTGTCCTCACTGCCGTCTTG +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + GGAATTTGGTGCCACTTCTGCT +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - CCTGACCCGGGTAAGTGGTTAT +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + ACCTACTAAAAAGGCTGGTGGC +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - AGCATCTTGTAGAGCAGGTGGA +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + ACTTCTATTAAATGGGCAGATAACAACTG +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - GATTATCCATTCCCTGCGCGTC +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + ACCTGGTGTATACGTTGTCTTTGG +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - GCTGAAATCGGGGCCATTTGTA +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - TGACTTTTTGCTACCTGCGCAT +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + AGAAGTTACTGGCGATAGTTGTAATAACT +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - TGCTGATATGTCCAAAGCACCA +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + TTTACCAGGAGTTTTCTGTGGTGT +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - TGGGCCTCATAGCACATTGGTA +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + AGACACCTAAGTATAAGTTTGTTCGCA +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - GCCCACATGGAAATGGCTTGAT +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + ATGGTGCTAGGAGAGTGTGGAC +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - GGATTTCCCACAATGCTGATGC +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + ACCTCTTACAACAGCAGCCAAAC +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - CGTCCTTTTCTTGGAAGCGACA +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + ACAGGCACTAGTACTGATGTCGT +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - GTGCAGCTACTGAAAAGCACGT +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + TTTTAAGGAATTACTTGTGTATGCTGCT +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - ACACACAACAGCATCGTCAGAG +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + ACAACACAGACTTTATGAGTGTCTCT +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - CTCTGTCAGACAGCACTTCACG +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + TCAAGCTTTTTGCAGCAGAAACG +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - CCAAGCAGGGTTACGTGTAAGG +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + GCACATAAAGACAAATCAGCTCAATGC +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - TGTCTGAAGCAGTGGAAAAGCA +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + GGCACATGGCTTTGAGTTGACA +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - CCTGTTGTCCATCAAAGTGTCCC +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + ACAATTTGATACTTATAACCTCTGGAACAC +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - GATTAGGCATAGCAACACCCGG +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - GCAGGGGGTAATTGAGTTCTGG +MN908947.3 21675 21700 SARS-CoV-2_21_RIGHT_2 1 - TGAGGATCTGAAAACTTTGTCAGGG +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + GTGATGTTCTTGTTAACAACTAAACGAACA +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - AACAGATGCAAATCTGGTGGCG +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_2 2 - AACAGATGCAAATTTGGTGGCG +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + ACTTTAGAGTCCAACCAACAGAATCT +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_2 1 + ACTTTAGAGTTCAACCAACAGAATCT +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - TGACTAGCTACACTACGTGCCC +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + GCTGAACATGTCAACAACTCATATGA +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - ATGAGGTGCTGACTGAGGGAAG +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + TGCTGCTACTAAAATGTCAGAGTGT +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - CATTTCCAGCAAAGCCAAAGCC +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + GCCTTGAAGCCCCTTTTCTCTA +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_2 2 + GCCTTGAAGCCCCTTTTTTCTA +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - AATGACCACATGGAACGCGTAC +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + TGGATCACCGGTGGAATTGCTA +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - TGTTCGTTTAGGCGTGACAAGT +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + TTTGTGCTTTTTAGCCTTTCTGCT +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_2 2 + TTTGTGCTTTTTAGCCTTTCTGTT +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - GTTTGGCCTTGTTGTTGTTGGC +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + TGAGGGAGCCTTGAATACACCA +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/primer.svg b/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/primer.svg new file mode 100644 index 0000000..08d25aa --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/midnight/bccdc-v4/reference.fasta b/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/reference.fasta similarity index 100% rename from sars-cov-2/midnight/bccdc-v4/reference.fasta rename to schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/reference.fasta diff --git a/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/scheme.bed b/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/scheme.bed new file mode 100644 index 0000000..5fe4e19 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/bccdc-v4.0.0/scheme.bed @@ -0,0 +1,63 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - +MN908947.3 21675 21700 SARS-CoV-2_21_RIGHT_2 1 - +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_2 2 - +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_2 1 + +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_2 2 + +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_2 2 + +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - diff --git a/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/info.yml b/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/info.yml new file mode 100644 index 0000000..4778984 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/info.yml @@ -0,0 +1,23 @@ +schema_version: 1.0.0a +organism: sars-cov-2 +name: midnight +amplicon_size: 1200 +version: ont-v3.0.0 +aliases: +- Midnight-ONT/V3 +derived_from: sars-cov-2/midnight/1200/v2 +developers: +- Nikki Freed +- Olin Silander +- Oxford Nanopore Technologies +vendors: +- organisation_name: Oxford Nanopore Technologies + kit_name: MRT001.30 +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/v3 +citations: +- https://dx.doi.org/10.17504/protocols.io.bwyppfvn +notes: +- Accomodates Omicron BA.2 +license: CC-BY-4.0 +primer_checksum: primaschema:1969577706571a6e +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/primer.bed b/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/primer.bed new file mode 100644 index 0000000..10d2ec9 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/primer.bed @@ -0,0 +1,63 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + ACCAACCAACTTTCGATCTCTTGT +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - GGTTGCATTCATTTGGTGACGC +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + CCATAATCAAGACTATTCAACCAAGGGT +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - ACAGGTGACAATTTGTCCACCG +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - GATTGTCCTCACTGCCGTCTTG +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + GGAATTTGGTGCCACTTCTGCT +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - CCTGACCCGGGTAAGTGGTTAT +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + ACCTACTAAAAAGGCTGGTGGC +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - AGCATCTTGTAGAGCAGGTGGA +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + ACTTCTATTAAATGGGCAGATAACAACTG +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - GATTATCCATTCCCTGCGCGTC +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + ACCTGGTGTATACGTTGTCTTTGG +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - GCTGAAATCGGGGCCATTTGTA +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - TGACTTTTTGCTACCTGCGCAT +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + AGAAGTTACTGGCGATAGTTGTAATAACT +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - TGCTGATATGTCCAAAGCACCA +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + TTTACCAGGAGTTTTCTGTGGTGT +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - TGGGCCTCATAGCACATTGGTA +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + AGACACCTAAGTATAAGTTTGTTCGCA +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - GCCCACATGGAAATGGCTTGAT +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + ATGGTGCTAGGAGAGTGTGGAC +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - GGATTTCCCACAATGCTGATGC +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + ACCTCTTACAACAGCAGCCAAAC +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - CGTCCTTTTCTTGGAAGCGACA +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + ACAGGCACTAGTACTGATGTCGT +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - GTGCAGCTACTGAAAAGCACGT +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + TTTTAAGGAATTACTTGTGTATGCTGCT +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - ACACACAACAGCATCGTCAGAG +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + ACAACACAGACTTTATGAGTGTCTCT +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - CTCTGTCAGACAGCACTTCACG +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + TCAAGCTTTTTGCAGCAGAAACG +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - CCAAGCAGGGTTACGTGTAAGG +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + GCACATAAAGACAAATCAGCTCAATGC +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - TGTCTGAAGCAGTGGAAAAGCA +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + GGCACATGGCTTTGAGTTGACA +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - CCTGTTGTCCATCAAAGTGTCCC +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + ACAATTTGATACTTATAACCTCTGGAACAC +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - GATTAGGCATAGCAACACCCGG +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA +MN908947.3 21613 21642 SARS-CoV-2_21_RIGHT_2 1 - GTGTATGATTGAGTTCTGGTTGTAAG +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - GCAGGGGGTAATTGAGTTCTGG +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + GTGATGTTCTTGTTAACAACTAAACGAACA +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - AACAGATGCAAATCTGGTGGCG +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_2 2 - AACAGATGCAAATTTGGTGGCG +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + ACTTTAGAGTCCAACCAACAGAATCT +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_2 1 + ACTTTAGAGTTCAACCAACAGAATCT +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - TGACTAGCTACACTACGTGCCC +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + GCTGAACATGTCAACAACTCATATGA +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_2 2 + GCTGAATATGTCAACAACTCATATGA +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - ATGAGGTGCTGACTGAGGGAAG +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + TGCTGCTACTAAAATGTCAGAGTGT +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - CATTTCCAGCAAAGCCAAAGCC +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + GCCTTGAAGCCCCTTTTCTCTA +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - AATGACCACATGGAACGCGTAC +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + TGGATCACCGGTGGAATTGCTA +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - TGTTCGTTTAGGCGTGACAAGT +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + TTTGTGCTTTTTAGCCTTTCTGCT +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_2 2 + TTTGTGCTTTTTAGCCTTTCTGTT +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - GTTTGGCCTTGTTGTTGTTGGC +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + TGAGGGAGCCTTGAATACACCA +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/primer.svg b/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/primer.svg new file mode 100644 index 0000000..de16096 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/midnight/ont-v3/reference.fasta b/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/reference.fasta similarity index 100% rename from sars-cov-2/midnight/ont-v3/reference.fasta rename to schemes/sars-cov-2/midnight/1200/ont-v3.0.0/reference.fasta diff --git a/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/scheme.bed b/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/scheme.bed new file mode 100644 index 0000000..b4d9062 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/ont-v3.0.0/scheme.bed @@ -0,0 +1,63 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + +MN908947.3 21613 21642 SARS-CoV-2_21_RIGHT_2 1 - +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_2 2 - +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_2 1 + +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_2 2 + +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_2 2 + +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - diff --git a/sars-cov-2/midnight/v1/info.yml b/schemes/sars-cov-2/midnight/1200/v1.0.0/info.yml similarity index 53% rename from sars-cov-2/midnight/v1/info.yml rename to schemes/sars-cov-2/midnight/1200/v1.0.0/info.yml index bc7898c..b7d340f 100644 --- a/sars-cov-2/midnight/v1/info.yml +++ b/schemes/sars-cov-2/midnight/1200/v1.0.0/info.yml @@ -1,21 +1,23 @@ -schema_version: 0.9.0 -name: midnight-v1 +schema_version: 1.0.0a organism: sars-cov-2 +name: midnight +amplicon_size: 1200 +version: v1.0.0 aliases: -- Midnight-ONT/V1 - midnight-ont-v1 +- Midnight-ONT/V1 - V1200 developers: -- person_name: Nikki Freed -- person_name: Olin Silander +- Nikki Freed +- Olin Silander vendors: - organisation_name: Oxford Nanopore Technologies kit_name: MRT001.10 - organisation_name: Integrated DNA Technologies -amplicon_size: 1200 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/v1 +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/v1 citations: - https://dx.doi.org/10.17504/protocols.io.bwyppfvn -primer_scheme_status: DEPRECATED -primer_checksum: primaschema:e1303ce0367cc245 -reference_checksum: primaschema:7d5621cd3b3e498d +license: CC-BY-4.0 +status: DEPRECATED +primer_checksum: primaschema:5f4389079f1acc9c +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/midnight/1200/v1.0.0/primer.bed b/schemes/sars-cov-2/midnight/1200/v1.0.0/primer.bed new file mode 100644 index 0000000..a7c7c4a --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/v1.0.0/primer.bed @@ -0,0 +1,58 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + ACCAACCAACTTTCGATCTCTTGT +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - GGTTGCATTCATTTGGTGACGC +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + CCATAATCAAGACTATTCAACCAAGGGT +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - ACAGGTGACAATTTGTCCACCG +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - GATTGTCCTCACTGCCGTCTTG +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + GGAATTTGGTGCCACTTCTGCT +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - CCTGACCCGGGTAAGTGGTTAT +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + ACCTACTAAAAAGGCTGGTGGC +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - AGCATCTTGTAGAGCAGGTGGA +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + ACTTCTATTAAATGGGCAGATAACAACTG +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - GATTATCCATTCCCTGCGCGTC +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + ACCTGGTGTATACGTTGTCTTTGG +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - GCTGAAATCGGGGCCATTTGTA +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - TGACTTTTTGCTACCTGCGCAT +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + AGAAGTTACTGGCGATAGTTGTAATAACT +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - TGCTGATATGTCCAAAGCACCA +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + TTTACCAGGAGTTTTCTGTGGTGT +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - TGGGCCTCATAGCACATTGGTA +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + AGACACCTAAGTATAAGTTTGTTCGCA +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - GCCCACATGGAAATGGCTTGAT +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + ATGGTGCTAGGAGAGTGTGGAC +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - GGATTTCCCACAATGCTGATGC +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + ACCTCTTACAACAGCAGCCAAAC +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - CGTCCTTTTCTTGGAAGCGACA +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + ACAGGCACTAGTACTGATGTCGT +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - GTGCAGCTACTGAAAAGCACGT +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + TTTTAAGGAATTACTTGTGTATGCTGCT +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - ACACACAACAGCATCGTCAGAG +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + ACAACACAGACTTTATGAGTGTCTCT +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - CTCTGTCAGACAGCACTTCACG +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + TCAAGCTTTTTGCAGCAGAAACG +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - CCAAGCAGGGTTACGTGTAAGG +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + GCACATAAAGACAAATCAGCTCAATGC +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - TGTCTGAAGCAGTGGAAAAGCA +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + GGCACATGGCTTTGAGTTGACA +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - CCTGTTGTCCATCAAAGTGTCCC +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + ACAATTTGATACTTATAACCTCTGGAACAC +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - GATTAGGCATAGCAACACCCGG +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - GCAGGGGGTAATTGAGTTCTGG +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + GTGATGTTCTTGTTAACAACTAAACGAACA +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - AACAGATGCAAATCTGGTGGCG +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + ACTTTAGAGTCCAACCAACAGAATCT +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - TGACTAGCTACACTACGTGCCC +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + GCTGAACATGTCAACAACTCATATGA +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - ATGAGGTGCTGACTGAGGGAAG +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + TGCTGCTACTAAAATGTCAGAGTGT +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - CATTTCCAGCAAAGCCAAAGCC +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + GCCTTGAAGCCCCTTTTCTCTA +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - AATGACCACATGGAACGCGTAC +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + TGGATCACCGGTGGAATTGCTA +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - TGTTCGTTTAGGCGTGACAAGT +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + TTTGTGCTTTTTAGCCTTTCTGCT +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - GTTTGGCCTTGTTGTTGTTGGC +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + TGAGGGAGCCTTGAATACACCA +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/schemes/sars-cov-2/midnight/1200/v1.0.0/primer.svg b/schemes/sars-cov-2/midnight/1200/v1.0.0/primer.svg new file mode 100644 index 0000000..b7d853c --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/v1.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/midnight/v1/reference.fasta b/schemes/sars-cov-2/midnight/1200/v1.0.0/reference.fasta similarity index 100% rename from sars-cov-2/midnight/v1/reference.fasta rename to schemes/sars-cov-2/midnight/1200/v1.0.0/reference.fasta diff --git a/schemes/sars-cov-2/midnight/1200/v1.0.0/scheme.bed b/schemes/sars-cov-2/midnight/1200/v1.0.0/scheme.bed new file mode 100644 index 0000000..888f3e9 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/v1.0.0/scheme.bed @@ -0,0 +1,58 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - diff --git a/sars-cov-2/midnight/v2/info.yml b/schemes/sars-cov-2/midnight/1200/v2.0.0/info.yml similarity index 64% rename from sars-cov-2/midnight/v2/info.yml rename to schemes/sars-cov-2/midnight/1200/v2.0.0/info.yml index efabed0..8354d30 100644 --- a/sars-cov-2/midnight/v2/info.yml +++ b/schemes/sars-cov-2/midnight/1200/v2.0.0/info.yml @@ -1,25 +1,27 @@ -schema_version: 0.9.0 -name: midnight-v2 +schema_version: 1.0.0a organism: sars-cov-2 +name: midnight +amplicon_size: 1200 +version: v2.0.0 aliases: -- Midnight-ONT/V2 - midnight-ont-v2 - midnight-idt-v1 +- Midnight-ONT/V2 derived_from: midnight-v1 developers: -- person_name: Nikki Freed -- person_name: Olin Silander +- Nikki Freed +- Olin Silander vendors: - organisation_name: Oxford Nanopore Technologies kit_name: MRT001.20 -amplicon_size: 1200 -repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/v2 +definition_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/v2 citations: - https://dx.doi.org/10.17504/protocols.io.bwyppfvn notes: - Accomodates Omicron BA.1 with single primer addition - https://twitter.com/freed_nikki/status/1464477522448433156 - Not considered a new version by Freed et al. and IDT despite additional primer -primer_scheme_status: DEPRECATED -primer_checksum: primaschema:8f733a1f180c435a -reference_checksum: primaschema:7d5621cd3b3e498d +license: CC-BY-4.0 +status: DEPRECATED +primer_checksum: primaschema:eafcbe457b8a2345 +reference_checksum: primaschema:b1acd7163146bf17 diff --git a/schemes/sars-cov-2/midnight/1200/v2.0.0/primer.bed b/schemes/sars-cov-2/midnight/1200/v2.0.0/primer.bed new file mode 100644 index 0000000..59d6310 --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/v2.0.0/primer.bed @@ -0,0 +1,59 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + ACCAACCAACTTTCGATCTCTTGT +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - GGTTGCATTCATTTGGTGACGC +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + CCATAATCAAGACTATTCAACCAAGGGT +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - ACAGGTGACAATTTGTCCACCG +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + GGCTTGAAGAGAAGTTTAAGGAAGGT +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - GATTGTCCTCACTGCCGTCTTG +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + GGAATTTGGTGCCACTTCTGCT +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - CCTGACCCGGGTAAGTGGTTAT +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + ACCTACTAAAAAGGCTGGTGGC +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - AGCATCTTGTAGAGCAGGTGGA +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + ACTTCTATTAAATGGGCAGATAACAACTG +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - GATTATCCATTCCCTGCGCGTC +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + ACCTGGTGTATACGTTGTCTTTGG +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - GCTGAAATCGGGGCCATTTGTA +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + CAATCATGCAATTGTTTTTCAGCTATTTTG +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - TGACTTTTTGCTACCTGCGCAT +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + AGAAGTTACTGGCGATAGTTGTAATAACT +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - TGCTGATATGTCCAAAGCACCA +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + TTTACCAGGAGTTTTCTGTGGTGT +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - TGGGCCTCATAGCACATTGGTA +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + AGACACCTAAGTATAAGTTTGTTCGCA +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - GCCCACATGGAAATGGCTTGAT +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + ATGGTGCTAGGAGAGTGTGGAC +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - GGATTTCCCACAATGCTGATGC +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + ACCTCTTACAACAGCAGCCAAAC +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - CGTCCTTTTCTTGGAAGCGACA +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + ACAGGCACTAGTACTGATGTCGT +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - GTGCAGCTACTGAAAAGCACGT +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + TTTTAAGGAATTACTTGTGTATGCTGCT +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - ACACACAACAGCATCGTCAGAG +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + ACAACACAGACTTTATGAGTGTCTCT +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - CTCTGTCAGACAGCACTTCACG +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + TCAAGCTTTTTGCAGCAGAAACG +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - CCAAGCAGGGTTACGTGTAAGG +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + GCACATAAAGACAAATCAGCTCAATGC +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - TGTCTGAAGCAGTGGAAAAGCA +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + GGCACATGGCTTTGAGTTGACA +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - CCTGTTGTCCATCAAAGTGTCCC +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + ACAATTTGATACTTATAACCTCTGGAACAC +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - GATTAGGCATAGCAACACCCGG +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + TCTGTAGTTTCTAAGGTTGTCAAAGTGA +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - GCAGGGGGTAATTGAGTTCTGG +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + GTGATGTTCTTGTTAACAACTAAACGAACA +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - AACAGATGCAAATCTGGTGGCG +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + ACTTTAGAGTCCAACCAACAGAATCT +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - TGACTAGCTACACTACGTGCCC +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + GCTGAACATGTCAACAACTCATATGA +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - ATGAGGTGCTGACTGAGGGAAG +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + TGCTGCTACTAAAATGTCAGAGTGT +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - CATTTCCAGCAAAGCCAAAGCC +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + GCCTTGAAGCCCCTTTTCTCTA +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - AATGACCACATGGAACGCGTAC +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + TGGATCACCGGTGGAATTGCTA +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - TGTTCGTTTAGGCGTGACAAGT +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + TTTGTGCTTTTTAGCCTTTCTGCT +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_2 2 + TTTGTGCTTTTTAGCCTTTCTGTT +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - GTTTGGCCTTGTTGTTGTTGGC +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + TGAGGGAGCCTTGAATACACCA +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 - TAGGCAGCTCTCCCTAGCATTG diff --git a/schemes/sars-cov-2/midnight/1200/v2.0.0/primer.svg b/schemes/sars-cov-2/midnight/1200/v2.0.0/primer.svg new file mode 100644 index 0000000..e3c55af --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/v2.0.0/primer.svg @@ -0,0 +1 @@ +12pool02,0004,0006,0008,00010,00012,00014,00016,00018,00020,00022,00024,00026,00028,00030,000MN908947.3+-strand \ No newline at end of file diff --git a/sars-cov-2/midnight/v2/reference.fasta b/schemes/sars-cov-2/midnight/1200/v2.0.0/reference.fasta similarity index 100% rename from sars-cov-2/midnight/v2/reference.fasta rename to schemes/sars-cov-2/midnight/1200/v2.0.0/reference.fasta diff --git a/schemes/sars-cov-2/midnight/1200/v2.0.0/scheme.bed b/schemes/sars-cov-2/midnight/1200/v2.0.0/scheme.bed new file mode 100644 index 0000000..236992d --- /dev/null +++ b/schemes/sars-cov-2/midnight/1200/v2.0.0/scheme.bed @@ -0,0 +1,59 @@ +MN908947.3 30 54 SARS-CoV-2_1_LEFT_1 1 + +MN908947.3 1183 1205 SARS-CoV-2_1_RIGHT_1 1 - +MN908947.3 1100 1128 SARS-CoV-2_2_LEFT_1 2 + +MN908947.3 2244 2266 SARS-CoV-2_2_RIGHT_1 2 - +MN908947.3 2153 2179 SARS-CoV-2_3_LEFT_1 1 + +MN908947.3 3235 3257 SARS-CoV-2_3_RIGHT_1 1 - +MN908947.3 3144 3166 SARS-CoV-2_4_LEFT_1 2 + +MN908947.3 4240 4262 SARS-CoV-2_4_RIGHT_1 2 - +MN908947.3 4167 4189 SARS-CoV-2_5_LEFT_1 1 + +MN908947.3 5337 5359 SARS-CoV-2_5_RIGHT_1 1 - +MN908947.3 5257 5286 SARS-CoV-2_6_LEFT_1 2 + +MN908947.3 6358 6380 SARS-CoV-2_6_RIGHT_1 2 - +MN908947.3 6283 6307 SARS-CoV-2_7_LEFT_1 1 + +MN908947.3 7379 7401 SARS-CoV-2_7_RIGHT_1 1 - +MN908947.3 7298 7328 SARS-CoV-2_8_LEFT_1 2 + +MN908947.3 8363 8385 SARS-CoV-2_8_RIGHT_1 2 - +MN908947.3 8253 8282 SARS-CoV-2_9_LEFT_1 1 + +MN908947.3 9378 9400 SARS-CoV-2_9_RIGHT_1 1 - +MN908947.3 9303 9327 SARS-CoV-2_10_LEFT_1 2 + +MN908947.3 10429 10451 SARS-CoV-2_10_RIGHT_1 2 - +MN908947.3 10343 10370 SARS-CoV-2_11_LEFT_1 1 + +MN908947.3 11447 11469 SARS-CoV-2_11_RIGHT_1 1 - +MN908947.3 11372 11394 SARS-CoV-2_12_LEFT_1 2 + +MN908947.3 12538 12560 SARS-CoV-2_12_RIGHT_1 2 - +MN908947.3 12450 12473 SARS-CoV-2_13_LEFT_1 1 + +MN908947.3 13599 13621 SARS-CoV-2_13_RIGHT_1 1 - +MN908947.3 13509 13532 SARS-CoV-2_14_LEFT_1 2 + +MN908947.3 14619 14641 SARS-CoV-2_14_RIGHT_1 2 - +MN908947.3 14540 14568 SARS-CoV-2_15_LEFT_1 1 + +MN908947.3 15713 15735 SARS-CoV-2_15_RIGHT_1 1 - +MN908947.3 15608 15634 SARS-CoV-2_16_LEFT_1 2 + +MN908947.3 16698 16720 SARS-CoV-2_16_RIGHT_1 2 - +MN908947.3 16624 16647 SARS-CoV-2_17_LEFT_1 1 + +MN908947.3 17732 17754 SARS-CoV-2_17_RIGHT_1 1 - +MN908947.3 17622 17649 SARS-CoV-2_18_LEFT_1 2 + +MN908947.3 18684 18706 SARS-CoV-2_18_RIGHT_1 2 - +MN908947.3 18596 18618 SARS-CoV-2_19_LEFT_1 1 + +MN908947.3 19655 19678 SARS-CoV-2_19_RIGHT_1 1 - +MN908947.3 19574 19604 SARS-CoV-2_20_LEFT_1 2 + +MN908947.3 20676 20698 SARS-CoV-2_20_RIGHT_1 2 - +MN908947.3 20553 20581 SARS-CoV-2_21_LEFT_1 1 + +MN908947.3 21620 21642 SARS-CoV-2_21_RIGHT_1 1 - +MN908947.3 21532 21562 SARS-CoV-2_22_LEFT_1 2 + +MN908947.3 22590 22612 SARS-CoV-2_22_RIGHT_1 2 - +MN908947.3 22511 22537 SARS-CoV-2_23_LEFT_1 1 + +MN908947.3 23609 23631 SARS-CoV-2_23_RIGHT_1 1 - +MN908947.3 23518 23544 SARS-CoV-2_24_LEFT_1 2 + +MN908947.3 24714 24736 SARS-CoV-2_24_RIGHT_1 2 - +MN908947.3 24633 24658 SARS-CoV-2_25_LEFT_1 1 + +MN908947.3 25768 25790 SARS-CoV-2_25_RIGHT_1 1 - +MN908947.3 25690 25712 SARS-CoV-2_26_LEFT_1 2 + +MN908947.3 26835 26857 SARS-CoV-2_26_RIGHT_1 2 - +MN908947.3 26744 26766 SARS-CoV-2_27_LEFT_1 1 + +MN908947.3 27872 27894 SARS-CoV-2_27_RIGHT_1 1 - +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_1 2 + +MN908947.3 27784 27808 SARS-CoV-2_28_LEFT_2 2 + +MN908947.3 28985 29007 SARS-CoV-2_28_RIGHT_1 2 - +MN908947.3 28677 28699 SARS-CoV-2_29_LEFT_1 1 + +MN908947.3 29768 29790 SARS-CoV-2_29_RIGHT_1 1 -