From ea75384d9fea2700eba4a135999e25eaec95de5a Mon Sep 17 00:00:00 2001
From: Kirill Bessonov <kbessonov@gmail.com>
Date: Thu, 7 Nov 2024 18:06:23 -0500
Subject: [PATCH] --longreads option added for FASTQ long reads inputs such as
 PacBio, ONT, etc. Gives better mapping results

---
 README.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/README.md b/README.md
index 1cfa20c..1f3c4d5 100644
--- a/README.md
+++ b/README.md
@@ -123,6 +123,7 @@ optional arguments:
   -i INPUT, --input INPUT
                         Location of E. coli genome file(s). Can be a single file, a comma-
                         separated list of files, or a directory
+  --longreads           Enable for raw long reads FASTQ inputs (ONT, PacBio, other sequencing platforms). [default False]                      
   -c CORES, --cores CORES
                         The number of cores to run ectyper with
   -opid PERCENTIDENTITYOTYPE, --percentIdentityOtype PERCENTIDENTITYOTYPE