From dd77a947463dc19d80c77651b0ed71381a49f818 Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Wed, 30 Oct 2024 14:09:21 +0000 Subject: [PATCH] Built site for datacutr@0.2.0: b45b028 --- main/.nojekyll | 1 + main/404.html | 61 ++++----- main/LICENSE.html | 17 +-- main/articles/contribution_model.html | 23 ++-- main/articles/datacutr.html | 29 ++--- main/articles/examplemodular.html | 22 ++-- main/articles/examplewrapped.html | 22 ++-- main/articles/index.html | 15 +-- main/articles/modular.html | 22 ++-- main/articles/variable_cut.html | 30 ++--- main/articles/wrapper.html | 22 ++-- main/authors.html | 30 ++--- main/index.html | 32 ++--- main/news/index.html | 54 ++++++-- main/pkgdown.js | 8 ++ main/pkgdown.yml | 9 +- main/reference/apply_cut.html | 17 +-- main/reference/create_dcut.html | 19 +-- main/reference/datacutr-package.html | 28 ++-- main/reference/datacutr.html | 8 ++ main/reference/datacutr_ae.html | 17 +-- main/reference/datacutr_dm.html | 17 +-- main/reference/datacutr_ds.html | 17 +-- main/reference/datacutr_fa.html | 17 +-- main/reference/datacutr_lb.html | 17 +-- main/reference/datacutr_sc.html | 17 +-- main/reference/datacutr_ts.html | 17 +-- main/reference/date_cut.html | 17 +-- main/reference/drop_temp_vars.html | 17 +-- main/reference/impute_dcutdtc.html | 19 +-- main/reference/impute_sdtm.html | 17 +-- main/reference/index.html | 21 ++- main/reference/process_cut.html | 54 +++++--- main/reference/pt_cut.html | 17 +-- main/reference/read_out.html | 180 ++++++++++++++++++++++++++ main/reference/special_dm_cut.html | 17 +-- main/search.json | 2 +- main/sitemap.xml | 63 ++++----- 38 files changed, 545 insertions(+), 467 deletions(-) create mode 100644 main/.nojekyll create mode 100644 main/reference/datacutr.html create mode 100644 main/reference/read_out.html diff --git a/main/.nojekyll b/main/.nojekyll new file mode 100644 index 00000000..8b137891 --- /dev/null +++ b/main/.nojekyll @@ -0,0 +1 @@ + diff --git a/main/404.html b/main/404.html index 27558ee4..95a9ba15 100644 --- a/main/404.html +++ b/main/404.html @@ -6,28 +6,28 @@ Page not found (404) • datacutr - - - - - - - - - - - - + + + + + + + + + + + + - Skip to contents + Skip to contents
-

Page not found (404)

+

Page not found (404)

@@ -88,11 +81,11 @@
-

Developed by Tim Barnett, Nathan Rees, Alana Harris.

+

Developed by Tim Barnett, Nathan Rees, Alana Harris, Cara Andrews.

-

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/main/LICENSE.html b/main/LICENSE.html index a6add1f9..e6108f03 100644 --- a/main/LICENSE.html +++ b/main/LICENSE.html @@ -1,5 +1,5 @@ -Apache License • datacutr +Apache License • datacutr Skip to contents @@ -7,7 +7,7 @@ datacutr - 0.1.0 + 0.2.0
@@ -93,8 +86,8 @@

Introduction

This vignette gives you an overview of the anticipated contribution -model. The goal is to enable users of {datacutr} to -contribute and test the contribution model for {datacutr}. +model. The goal is to enable users of datacutr to +contribute and test the contribution model for datacutr. Adjustments might be made over time.

@@ -117,8 +110,8 @@

Contribution Modeldatacutr.

+

  • A datacutr core development team member will be in touch to discuss next steps.

    • @@ -129,11 +122,11 @@

    Contribution Model -

    Developed by Tim Barnett, Nathan Rees, Alana Harris.

    +

    Developed by Tim Barnett, Nathan Rees, Alana Harris, Cara Andrews.

    -

    Site built with pkgdown 2.1.0.

    +

    Site built with pkgdown 2.1.1.

    diff --git a/main/articles/datacutr.html b/main/articles/datacutr.html index a6984cd1..193df91e 100644 --- a/main/articles/datacutr.html +++ b/main/articles/datacutr.html @@ -26,7 +26,7 @@ datacutr - 0.1.0 + 0.2.0 + + + + + +
    +
    +
    +

    Function to generate datacut summary file

    + Source: R/read_out.R +
    read_out.Rd
    +
    + +
    +

    Produces a .html file summarizing the changes applied to data during a data cut. +The file will contain an overview for the change in number of records for each dataset, the types +of cut applied and the opportunity to inspect the removed records.

    +
    + +
    +

    Usage

    + 
    read_out(
+  dcut = NULL,
+  patient_cut_data = NULL,
+  date_cut_data = NULL,
+  dm_cut = NULL,
+  no_cut_list = NULL,
+  out_path = "."
+)
    +
    + +
    +

    Arguments

    + + +
    dcut
    +

    The output datacut dataset (DCUT), created via the create_dcut() function, +containing the variable DCUTDTC.

    + + +
    patient_cut_data
    +

    A list of quoted SDTMv domain names in which a patient cut has been. +applied (via the pt_cut() function). To be left blank if a patient cut has not been performed +on any domains.

    + + +
    date_cut_data
    +

    A list of quoted SDTMv domain names in which a date cut has been applied. +(via the date_cut() function). To be left blank if a date cut has not been performed on any +domains.

    + + +
    dm_cut
    +

    The output dataset, created via the special_dm_cut() function, containing +the variables DCUT_TEMP_REMOVE and DCUT_TEMP_DTHCHANGE.

    + + +
    no_cut_list
    +

    List of of quoted SDTMv domain names in which no cut should be applied. To be +left blank if no domains are to remain exactly as source.

    + + +
    out_path
    +

    A character vector of file save path for the summary file; +the default corresponds to the working directory, getwd().

    + +
    +
    +

    Value

    +

    Returns a .html file summarizing the changes made to data during a datacut.

    +
    + +
    +

    Examples

    + 
    if (FALSE) { # \dontrun{
+dcut <- tibble::tribble(
+  ~USUBJID, ~DCUTDTM, ~DCUTDTC,
+  "subject1", lubridate::ymd_hms("2020-10-11T23:59:59"), "2020-10-11T23:59:59",
+  "subject2", lubridate::ymd_hms("2020-10-11T23:59:59"), "2020-10-11T23:59:59",
+  "subject4", lubridate::ymd_hms("2020-10-11T23:59:59"), "2020-10-11T23:59:59"
+)
+
+ae <- tibble::tribble(
+  ~USUBJID, ~AESEQ, ~AESTDTC,
+  "subject1", 1, "2020-01-02T00:00:00",
+  "subject1", 2, "2020-08-31T00:00:00",
+  "subject1", 3, "2020-10-10T00:00:00",
+  "subject2", 2, "2020-02-20T00:00:00",
+  "subject3", 1, "2020-03-02T00:00:00",
+  "subject4", 1, "2020-11-02T00:00:00",
+  "subject4", 2, ""
+)
+
+dm <- tibble::tribble(
+  ~USUBJID, ~DTHDTC, ~DTHFL,
+  "subject1", "2020-10-11", "Y",
+  "subject2", "2020-10-12", "Y",
+)
+
+dt_ae <- date_cut(
+  dataset_sdtm = ae,
+  sdtm_date_var = AESTDTC,
+  dataset_cut = dcut,
+  cut_var = DCUTDTM
+)
+
+pt_ae <- pt_cut(
+  dataset_sdtm = ae,
+  dataset_cut = dcut
+)
+
+dm_cut <- special_dm_cut(
+  dataset_dm = dm,
+  dataset_cut = dcut,
+  cut_var = DCUTDTM
+)
+
+read_out(dcut, patient_cut_data = list(ae = pt_ae), date_cut_data = list(ae = dt_ae), dm_cut)
+} # }
+
    +
    +
    + + +
    +

    Developed by Tim Barnett, Nathan Rees, Alana Harris, Cara Andrews.

    +
    + +
    +

    Site built with pkgdown 2.1.1.

    +
    + +
    + + + + + + + diff --git a/main/reference/special_dm_cut.html b/main/reference/special_dm_cut.html index de6ed585..9e86b23d 100644 --- a/main/reference/special_dm_cut.html +++ b/main/reference/special_dm_cut.html @@ -1,7 +1,7 @@ Special DM Cut to reset Death variable information past cut date — special_dm_cut • datacutr +clearing death information within DM if death occurred after datacut date"> Skip to contents @@ -9,7 +9,7 @@ datacutr - 0.1.0 + 0.2.0