From f85bbc6d297ee4c069bd14aaad064028c2626073 Mon Sep 17 00:00:00 2001
From: Tim Barnett <timothy.barnett@roche.com>
Date: Wed, 31 Jul 2024 13:34:12 +0000
Subject: [PATCH 1/2] Add url for new pkgdown.yml requirements #206

---
 _pkgdown.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/_pkgdown.yml b/_pkgdown.yml
index e02c7c5d..d7b9c901 100644
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -1,3 +1,4 @@
+url: https://pharmaverse.github.io/datacutr
 template:
   bootstrap: 5
   params:

From a6527d889e8548f33932e02fba88208250c0e834 Mon Sep 17 00:00:00 2001
From: Tim Barnett <timothy.barnett@roche.com>
Date: Wed, 31 Jul 2024 13:58:56 +0000
Subject: [PATCH 2/2] Package upversions #206

---
 renv.lock | 867 ++++++++++++++++++------------------------------------
 1 file changed, 293 insertions(+), 574 deletions(-)

diff --git a/renv.lock b/renv.lock
index 7f02f357..54866ece 100644
--- a/renv.lock
+++ b/renv.lock
@@ -13,49 +13,21 @@
       "Package": "R6",
       "Version": "2.5.1",
       "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R"
-      ],
+      "Repository": "RSPM",
       "Hash": "470851b6d5d0ac559e9d01bb352b4021"
     },
-    "DT": {
-      "Package": "DT",
-      "Version": "0.33",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Hash": "64ff3427f559ce3f2597a4fe13255cb6"
-    },
     "Rcpp": {
       "Package": "Rcpp",
-      "Version": "1.0.3",
+      "Version": "1.0.13",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "methods",
-        "utils"
-      ],
-      "Hash": "f3ca785924863b0e4c8cb23b6a5c75a1"
+      "Hash": "f27411eb6d9c3dada5edd444b8416675"
     },
     "admiraldev": {
       "Package": "admiraldev",
       "Version": "1.1.0",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "cli",
-        "dplyr",
-        "glue",
-        "lifecycle",
-        "lubridate",
-        "purrr",
-        "rlang",
-        "stringr",
-        "tidyr",
-        "tidyselect"
-      ],
       "Hash": "6011df3d91f2e30c70a6170950bd9fcf"
     },
     "askpass": {
@@ -63,9 +35,6 @@
       "Version": "1.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "sys"
-      ],
       "Hash": "e8a22846fff485f0be3770c2da758713"
     },
     "assertthat": {
@@ -73,80 +42,92 @@
       "Version": "0.2.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "tools"
-      ],
       "Hash": "50c838a310445e954bc13f26f26a6ecf"
     },
+    "backports": {
+      "Package": "backports",
+      "Version": "1.5.0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "e1e1b9d75c37401117b636b7ae50827a"
+    },
     "base64enc": {
       "Package": "base64enc",
       "Version": "0.1-3",
       "Source": "Repository",
-      "Repository": "RSPM",
-      "Requirements": [
-        "R"
-      ],
+      "Repository": "CRAN",
       "Hash": "543776ae6848fde2f48ff3816d0628bc"
     },
+    "brew": {
+      "Package": "brew",
+      "Version": "1.0-10",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "8f4a384e19dccd8c65356dc096847b76"
+    },
     "brio": {
       "Package": "brio",
       "Version": "1.1.5",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R"
-      ],
       "Hash": "c1ee497a6d999947c2c224ae46799b1a"
     },
     "bslib": {
       "Package": "bslib",
-      "Version": "0.3.1",
+      "Version": "0.8.0",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "grDevices",
-        "htmltools",
-        "jquerylib",
-        "jsonlite",
-        "rlang",
-        "sass"
-      ],
-      "Hash": "56ae7e1987b340186a8a5a157c2ec358"
+      "Hash": "b299c6741ca9746fb227debcb0f9fb6c"
+    },
+    "cachem": {
+      "Package": "cachem",
+      "Version": "1.1.0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "cd9a672193789068eb5a2aad65a0dedf"
     },
     "callr": {
       "Package": "callr",
-      "Version": "3.7.0",
+      "Version": "3.7.6",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R6",
-        "processx",
-        "utils"
-      ],
-      "Hash": "461aa75a11ce2400245190ef5d3995df"
+      "Hash": "d7e13f49c19103ece9e58ad2d83a7354"
     },
     "cli": {
       "Package": "cli",
-      "Version": "3.6.0",
+      "Version": "3.6.3",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "utils"
-      ],
-      "Hash": "3177a5a16c243adc199ba33117bd9657"
+      "Hash": "b21916dd77a27642b447374a5d30ecf3"
     },
     "clipr": {
       "Package": "clipr",
       "Version": "0.7.0",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "utils"
-      ],
       "Hash": "08cf4045c149a0f0eaf405324c7495bd"
     },
+    "codetools": {
+      "Package": "codetools",
+      "Version": "0.2-19",
+      "Source": "Repository",
+      "Repository": "RSPM",
+      "Hash": "c089a619a7fae175d149d89164f8c7d8"
+    },
+    "commonmark": {
+      "Package": "commonmark",
+      "Version": "1.9.1",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "5d8225445acb167abf7797de48b2ee3c"
+    },
+    "covr": {
+      "Package": "covr",
+      "Version": "3.6.4",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "0cbf0435830e767ba9b292b313592362"
+    },
     "cpp11": {
       "Package": "cpp11",
       "Version": "0.3.1",
@@ -159,11 +140,6 @@
       "Version": "1.3.4",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "grDevices",
-        "methods",
-        "utils"
-      ],
       "Hash": "0d57bc8e27b7ba9e45dba825ebc0de6b"
     },
     "credentials": {
@@ -171,165 +147,111 @@
       "Version": "1.3.0",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "askpass",
-        "curl",
-        "jsonlite",
-        "openssl",
-        "sys"
-      ],
       "Hash": "a96728288c75a814c900af9da84387be"
     },
     "curl": {
       "Package": "curl",
-      "Version": "4.3",
+      "Version": "5.2.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R"
-      ],
-      "Hash": "2b7d10581cc730804e9ed178c8374bd6"
+      "Hash": "411ca2c03b1ce5f548345d2fc2685f7a"
+    },
+    "cyclocomp": {
+      "Package": "cyclocomp",
+      "Version": "1.1.1",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "cdc4a473222b0112d4df0bcfbed12d44"
     },
     "desc": {
       "Package": "desc",
-      "Version": "1.4.0",
+      "Version": "1.4.3",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "R6",
-        "crayon",
-        "rprojroot",
-        "utils"
-      ],
-      "Hash": "28763d08fadd0b733e3cee9dab4e12fe"
+      "Hash": "99b79fcbd6c4d1ce087f5c5c758b384f"
+    },
+    "devtools": {
+      "Package": "devtools",
+      "Version": "2.4.5",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "ea5bc8b4a6a01e4f12d98b58329930bb"
     },
     "diffobj": {
       "Package": "diffobj",
       "Version": "0.3.4",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "crayon",
-        "methods",
-        "stats",
-        "tools",
-        "utils"
-      ],
       "Hash": "feb5b7455eba422a2c110bb89852e6a3"
     },
     "digest": {
       "Package": "digest",
-      "Version": "0.6.25",
+      "Version": "0.6.36",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "utils"
-      ],
-      "Hash": "f697db7d92b7028c4b3436e9603fb636"
+      "Hash": "fd6824ad91ede64151e93af67df6376b"
     },
     "downlit": {
       "Package": "downlit",
-      "Version": "0.4.0",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "brio",
-        "desc",
-        "digest",
-        "evaluate",
-        "fansi",
-        "memoise",
-        "rlang",
-        "vctrs",
-        "yaml"
-      ],
-      "Hash": "ba63dc9ab5a31f3209892437e40c5f60"
+      "Version": "0.4.4",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "45a6a596bf0108ee1ff16a040a2df897"
     },
     "dplyr": {
       "Package": "dplyr",
       "Version": "1.0.5",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "R6",
-        "ellipsis",
-        "generics",
-        "glue",
-        "lifecycle",
-        "magrittr",
-        "methods",
-        "rlang",
-        "tibble",
-        "tidyselect",
-        "utils",
-        "vctrs"
-      ],
       "Hash": "d0d76c11ec807eb3f000eba4e3eb0f68"
     },
     "ellipsis": {
       "Package": "ellipsis",
       "Version": "0.3.2",
       "Source": "Repository",
-      "Repository": "RSPM",
-      "Requirements": [
-        "R",
-        "rlang"
-      ],
+      "Repository": "CRAN",
       "Hash": "bb0eec2fe32e88d9e2836c2f73ea2077"
     },
     "evaluate": {
       "Package": "evaluate",
-      "Version": "0.15",
+      "Version": "0.24.0",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "methods"
-      ],
-      "Hash": "699a7a93d08c962d9f8950b2d7a227f1"
+      "Hash": "a1066cbc05caee9a4bf6d90f194ff4da"
     },
     "fansi": {
       "Package": "fansi",
       "Version": "0.4.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R"
-      ],
       "Hash": "7fce217eaaf8016e72065e85c73027b5"
     },
     "fastmap": {
       "Package": "fastmap",
-      "Version": "1.1.0",
+      "Version": "1.2.0",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "77bd60a6157420d4ffa93b27cf6a58b8"
+      "Hash": "aa5e1cd11c2d15497494c5292d7ffcc8"
+    },
+    "fontawesome": {
+      "Package": "fontawesome",
+      "Version": "0.5.2",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "c2efdd5f0bcd1ea861c2d4e2a883a67d"
     },
     "fs": {
       "Package": "fs",
       "Version": "1.5.2",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "methods"
-      ],
       "Hash": "7c89603d81793f0d5486d91ab1fc6f1d"
     },
     "generics": {
       "Package": "generics",
       "Version": "0.1.3",
       "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "methods"
-      ],
+      "Repository": "RSPM",
       "Hash": "15e9634c0fcd294799e9b2e929ed1b86"
     },
     "gert": {
@@ -337,14 +259,6 @@
       "Version": "1.4.3",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "askpass",
-        "credentials",
-        "openssl",
-        "rstudioapi",
-        "sys",
-        "zip"
-      ],
       "Hash": "3a3f29a74f8bd85ed8d53ab039b18bcd"
     },
     "gh": {
@@ -352,13 +266,6 @@
       "Version": "1.3.0",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "cli",
-        "gitcreds",
-        "httr",
-        "ini",
-        "jsonlite"
-      ],
       "Hash": "38c2580abbda249bd6afeec00d14f531"
     },
     "gitcreds": {
@@ -373,65 +280,56 @@
       "Version": "1.6.0",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "methods"
-      ],
       "Hash": "b8bb7aaf248e45bac08ebed86f3a0aa4"
     },
     "highr": {
       "Package": "highr",
-      "Version": "0.8",
+      "Version": "0.11",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R"
-      ],
-      "Hash": "4dc5bb88961e347a0f4d8aad597cbfac"
+      "Hash": "d65ba49117ca223614f71b60d85b8ab7"
     },
     "htmltools": {
       "Package": "htmltools",
-      "Version": "0.5.2",
+      "Version": "0.5.8.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "base64enc",
-        "digest",
-        "fastmap",
-        "grDevices",
-        "rlang",
-        "utils"
-      ],
-      "Hash": "526c484233f42522278ab06fb185cb26"
+      "Hash": "81d371a9cc60640e74e4ab6ac46dcedc"
     },
     "htmlwidgets": {
       "Package": "htmlwidgets",
       "Version": "1.5.3",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "grDevices",
-        "htmltools",
-        "jsonlite",
-        "yaml"
-      ],
       "Hash": "6fdaa86d0700f8b3e92ee3c445a5a10d"
     },
+    "httpuv": {
+      "Package": "httpuv",
+      "Version": "1.6.15",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "d55aa087c47a63ead0f6fc10f8fa1ee0"
+    },
     "httr": {
       "Package": "httr",
-      "Version": "1.4.2",
+      "Version": "1.4.7",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "ac107251d9d9fd72f0ca8049988f1d7f"
+    },
+    "httr2": {
+      "Package": "httr2",
+      "Version": "1.0.2",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "R6",
-        "curl",
-        "jsonlite",
-        "mime",
-        "openssl"
-      ],
-      "Hash": "a525aba14184fec243f9eaec62fbed43"
+      "Hash": "320c8fe23fcb25a6690ef7bdb6a3a705"
+    },
+    "hunspell": {
+      "Package": "hunspell",
+      "Version": "3.0.3",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "e957e989ea17f937964f0d46b0f0bca0"
     },
     "ini": {
       "Package": "ini",
@@ -444,10 +342,7 @@
       "Package": "jquerylib",
       "Version": "0.1.4",
       "Source": "Repository",
-      "Repository": "RSPM",
-      "Requirements": [
-        "htmltools"
-      ],
+      "Repository": "CRAN",
       "Hash": "5aab57a3bd297eee1c1d862735972182"
     },
     "jsonlite": {
@@ -455,52 +350,48 @@
       "Version": "1.6.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "methods"
-      ],
       "Hash": "84b0ee361e2f78d6b7d670db9471c0c5"
     },
     "knitr": {
       "Package": "knitr",
-      "Version": "1.39",
+      "Version": "1.48",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "evaluate",
-        "highr",
-        "methods",
-        "stringr",
-        "tools",
-        "xfun",
-        "yaml"
-      ],
-      "Hash": "029ab7c4badd3cf8af69016b2ba27493"
+      "Hash": "acf380f300c721da9fde7df115a5f86f"
+    },
+    "later": {
+      "Package": "later",
+      "Version": "1.3.2",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "a3e051d405326b8b0012377434c62b37"
+    },
+    "lazyeval": {
+      "Package": "lazyeval",
+      "Version": "0.2.2",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "d908914ae53b04d4c0c0fd72ecc35370"
     },
     "lifecycle": {
       "Package": "lifecycle",
       "Version": "1.0.3",
       "Source": "Repository",
       "Repository": "RSPM",
-      "Requirements": [
-        "R",
-        "cli",
-        "glue",
-        "rlang"
-      ],
       "Hash": "001cecbeac1cff9301bdc3775ee46a86"
     },
+    "lintr": {
+      "Package": "lintr",
+      "Version": "3.1.2",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "08cff46381a242d44c0d8dd0aabd9f71"
+    },
     "lubridate": {
       "Package": "lubridate",
       "Version": "1.7.4",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "Rcpp",
-        "methods",
-        "stringr"
-      ],
       "Hash": "796afeea047cda6bdb308d374a33eeb6"
     },
     "magrittr": {
@@ -508,39 +399,34 @@
       "Version": "2.0.3",
       "Source": "Repository",
       "Repository": "RSPM",
-      "Requirements": [
-        "R"
-      ],
       "Hash": "7ce2733a9826b3aeb1775d56fd305472"
     },
     "memoise": {
       "Package": "memoise",
-      "Version": "1.1.0",
+      "Version": "2.0.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "digest"
-      ],
-      "Hash": "58baa74e4603fcfb9a94401c58c8f9b1"
+      "Hash": "e2817ccf4a065c5d9d7f2cfbe7c1d78c"
     },
     "mime": {
       "Package": "mime",
       "Version": "0.9",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "tools"
-      ],
       "Hash": "e87a35ec73b157552814869f45a63aa3"
     },
+    "miniUI": {
+      "Package": "miniUI",
+      "Version": "0.1.1.1",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "fec5f52652d60615fdb3957b3d74324a"
+    },
     "openssl": {
       "Package": "openssl",
       "Version": "1.4.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "askpass"
-      ],
       "Hash": "49f7258fd86ebeaea1df24d9ded00478"
     },
     "pillar": {
@@ -548,94 +434,35 @@
       "Version": "1.4.3",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "cli",
-        "crayon",
-        "fansi",
-        "rlang",
-        "utf8",
-        "vctrs"
-      ],
       "Hash": "fa3ed60396b6998d0427c57dab90fba4"
     },
     "pkgbuild": {
       "Package": "pkgbuild",
-      "Version": "1.0.6",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "R6",
-        "callr",
-        "cli",
-        "crayon",
-        "desc",
-        "prettyunits",
-        "rprojroot",
-        "withr"
-      ],
-      "Hash": "899835dfe286963471cbdb9591f8f94f"
+      "Version": "1.4.4",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "a29e8e134a460a01e0ca67a4763c595b"
     },
     "pkgconfig": {
       "Package": "pkgconfig",
       "Version": "2.0.3",
       "Source": "Repository",
       "Repository": "RSPM",
-      "Requirements": [
-        "utils"
-      ],
       "Hash": "01f28d4278f15c76cddbea05899c5d6f"
     },
     "pkgdown": {
       "Package": "pkgdown",
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