From aea40d137667873b17a3385dbee8b882765beafc Mon Sep 17 00:00:00 2001 From: Vinh Nguyen Date: Mon, 7 Oct 2024 14:33:24 -0400 Subject: [PATCH] #123 - Initial commit for RS oncology CA 125 test data --- data-raw/rs_supprs_onco_ca125.R | 170 ++++++++++++++++++++++++++++++++ data/rs_onco_ca125.rda | Bin 0 -> 1065 bytes data/supprs_onco_ca125.rda | Bin 0 -> 817 bytes 3 files changed, 170 insertions(+) create mode 100644 data-raw/rs_supprs_onco_ca125.R create mode 100644 data/rs_onco_ca125.rda create mode 100644 data/supprs_onco_ca125.rda diff --git a/data-raw/rs_supprs_onco_ca125.R b/data-raw/rs_supprs_onco_ca125.R new file mode 100644 index 00000000..e549e907 --- /dev/null +++ b/data-raw/rs_supprs_onco_ca125.R @@ -0,0 +1,170 @@ +# Datasets: rs_onco_ca125, supprs_onco_ca125 +# Description: RS Oncology and SUPPRS dataset using IMWG criteria + +# Load libraries ----- +library(dplyr) +library(usethis) + +# Create rs_onco_ca125 ---- +rs_onco_ca124 <- tibble::tribble( + ~DOMAIN, ~STUDYID, ~USUBJID, ~VISITNUM, ~VISIT, ~RSCAT, ~RSTESTCD, ~RSTEST, ~RSORRES, ~RSSTRESC, ~RSEVAL, ~RSEVALID, ~RSACPTFL, ~RSDTC, ~RSSEQ, + "RS", "CDISCPILOT01", "01-701-1015", 2L, "WEEK 3", "CA125", "OVRLRESP", "Overall Response", "Non-Response/ Non-PD", "SD", "INVESTIGATOR", NA, NA, "2014-01-23", 3L, + "RS", "CDISCPILOT01", "01-701-1015", 3L, "WEEK 6", "CA125", "OVRLRESP", "Overall Response", "Not Evaluable", "NE", "INVESTIGATOR", NA, NA, "2014-02", 6L, + "RS", "CDISCPILOT01", "01-701-1015", 4L, "WEEK 9", "CA125", "OVRLRESP", "Overall Response", "Response But Not Within Normal Range", "PR", "INVESTIGATOR", NA, NA, "2014-03-06", 9L, + "RS", "CDISCPILOT01", "01-701-1028", 2L, "WEEK 3", "CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2013-08-09", 3L, + "RS", "CDISCPILOT01", "01-701-1028", 3L, "WEEK 6", "CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2013-08-30", 6L, + "RS", "CDISCPILOT01", "01-701-1028", 4L, "WEEK 9", "CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2013-09-30", 9L, + "RS", "CDISCPILOT01", "01-701-1034", 2L, "WEEK 3", "CA125", "OVRLRESP", "Overall Response", "Response Within Normal Range", "CR", "INVESTIGATOR", NA, NA, "2014-07-22", 3L, + "RS", "CDISCPILOT01", "01-701-1034", 3L, "WEEK 6", "CA125", "OVRLRESP", "Overall Response", "Response Within Normal Range", "CR", "INVESTIGATOR", NA, NA, "2014-08-20", 6L, + "RS", "CDISCPILOT01", "01-701-1097", 2L, "WEEK 3", "CA125", "OVRLRESP", "Overall Response", "Non-Response/ Non-PD", "SD", "INVESTIGATOR", NA, NA, "2014-01-22", 3L, + "RS", "CDISCPILOT01", "01-701-1115", 2L, "WEEK 3", "CA125", "OVRLRESP", "Overall Response", "Response But Not Within Normal Range", "PR", "INVESTIGATOR", NA, NA, "2012-12-21", 3L, + "RS", "CDISCPILOT01", "01-701-1115", 3L, "WEEK 6", "CA125", "OVRLRESP", "Overall Response", "Response But Not Within Normal Range", "PR", "INVESTIGATOR", NA, NA, "2013-01-11", 6L, + "RS", "CDISCPILOT01", "01-701-1115", 4L, "WEEK 9", "CA125", "OVRLRESP", "Overall Response", "Response Within Normal Range", "CR", "INVESTIGATOR", NA, NA, "2013-02-01", 9L, + "RS", "CDISCPILOT01", "01-701-1118", 2L, "WEEK 3", "CA125", "OVRLRESP", "Overall Response", "Non-Response/ Non-PD", "SD", "INVESTIGATOR", NA, NA, "2014-04-02", 3L, + "RS", "CDISCPILOT01", "01-701-1118", 3L, "WEEK 6", "CA125", "OVRLRESP", "Overall Response", "Response Within Normal Range", "CR", "INVESTIGATOR", NA, NA, "2014-04-23", 6L, + "RS", "CDISCPILOT01", "01-701-1118", 4L, "WEEK 9", "CA125", "OVRLRESP", "Overall Response", "Not Evaluable", "NE", "INVESTIGATOR", NA, NA, "2014-05-14", 9L, + "RS", "CDISCPILOT01", "01-701-1118", 5L, "WEEK 12", "CA125", "OVRLRESP", "Overall Response", "Response Within Normal Range", "CR", "INVESTIGATOR", NA, NA, "2014-06-04", 12L, + "RS", "CDISCPILOT01", "01-701-1130", 2L, "WEEK 3", "CA125", "OVRLRESP", "Overall Response", "Non-Response/ Non-PD", "SD", "INVESTIGATOR", NA, NA, "2014-03-08", 3L, + "RS", "CDISCPILOT01", "01-701-1130", 3L, "WEEK 6", "CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2014-03-29", 6L, + "RS", "CDISCPILOT01", "01-701-1130", 4L, "WEEK 9", "CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2014-04-19", 9L, + "RS", "CDISCPILOT01", "01-701-1133", 2L, "WEEK 3", "CA125", "OVRLRESP", "Overall Response", "Response But Not Within Normal Range", "PR", "INVESTIGATOR", NA, NA, "2012-11-18", 3L, + "RS", "CDISCPILOT01", "01-701-1133", 3L, "WEEK 6", "CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2012-12-09", 6L, + "RS", "CDISCPILOT01", "01-701-1133", 4L, "WEEK 9", "CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2012-12-30", 9L, + "RS", "CDISCPILOT01", "01-701-1015", 2L, "WEEK 3", "RECIST 1.1", "OVRLRESP", "Overall Response", "SD", "SD", "INVESTIGATOR", NA, NA, "2014-01-23", 12L, + "RS", "CDISCPILOT01", "01-701-1015", 3L, "WEEK 6", "RECIST 1.1", "OVRLRESP", "Overall Response", "NE", "NE", "INVESTIGATOR", NA, NA, "2014-02", 15L, + "RS", "CDISCPILOT01", "01-701-1015", 4L, "WEEK 9", "RECIST 1.1", "OVRLRESP", "Overall Response", "PR", "PR", "INVESTIGATOR", NA, NA, "2014-03-06", 18L, + "RS", "CDISCPILOT01", "01-701-1028", 2L, "WEEK 3", "RECIST 1.1", "OVRLRESP", "Overall Response", "PR", "PR", "INVESTIGATOR", NA, NA, "2013-08-09", 12L, + "RS", "CDISCPILOT01", "01-701-1028", 3L, "WEEK 6", "RECIST 1.1", "OVRLRESP", "Overall Response", "PD", "PD", "INVESTIGATOR", NA, NA, "2013-08-30", 15L, + "RS", "CDISCPILOT01", "01-701-1028", 4L, "WEEK 9", "RECIST 1.1", "OVRLRESP", "Overall Response", "PD", "PD", "INVESTIGATOR", NA, NA, "2013-09-30", 18L, + "RS", "CDISCPILOT01", "01-701-1034", 2L, "WEEK 3", "RECIST 1.1", "OVRLRESP", "Overall Response", "NON-CR/NON-PD", "NON-CR/NON-PD", "INVESTIGATOR", NA, NA, "2014-07-22", 12L, + "RS", "CDISCPILOT01", "01-701-1034", 3L, "WEEK 6", "RECIST 1.1", "OVRLRESP", "Overall Response", "CR", "CR", "INVESTIGATOR", NA, NA, "2014-08-20", 15L, + "RS", "CDISCPILOT01", "01-701-1097", 2L, "WEEK 3", "RECIST 1.1", "OVRLRESP", "Overall Response", "SD", "SD", "INVESTIGATOR", NA, NA, "2014-01-22", 12L, + "RS", "CDISCPILOT01", "01-701-1115", 2L, "WEEK 3", "RECIST 1.1", "OVRLRESP", "Overall Response", "SD", "SD", "INVESTIGATOR", NA, NA, "2012-12-21", 12L, + "RS", "CDISCPILOT01", "01-701-1115", 3L, "WEEK 6", "RECIST 1.1", "OVRLRESP", "Overall Response", "PR", "PR", "INVESTIGATOR", NA, NA, "2013-01-11", 15L, + "RS", "CDISCPILOT01", "01-701-1115", 4L, "WEEK 9", "RECIST 1.1", "OVRLRESP", "Overall Response", "CR", "CR", "INVESTIGATOR", NA, NA, "2013-02-01", 18L, + "RS", "CDISCPILOT01", "01-701-1118", 2L, "WEEK 3", "RECIST 1.1", "OVRLRESP", "Overall Response", "SD", "SD", "INVESTIGATOR", NA, NA, "2014-04-02", 12L, + "RS", "CDISCPILOT01", "01-701-1118", 3L, "WEEK 6", "RECIST 1.1", "OVRLRESP", "Overall Response", "CR", "CR", "INVESTIGATOR", NA, NA, "2014-04-23", 15L, + "RS", "CDISCPILOT01", "01-701-1118", 4L, "WEEK 9", "RECIST 1.1", "OVRLRESP", "Overall Response", "NE", "NE", "INVESTIGATOR", NA, NA, "2014-05-14", 18L, + "RS", "CDISCPILOT01", "01-701-1118", 5L, "WEEK 12", "RECIST 1.1", "OVRLRESP", "Overall Response", "CR", "CR", "INVESTIGATOR", NA, NA, "2014-06-04", 21L, + "RS", "CDISCPILOT01", "01-701-1130", 2L, "WEEK 3", "RECIST 1.1", "OVRLRESP", "Overall Response", "SD", "SD", "INVESTIGATOR", NA, NA, "2014-03-08", 12L, + "RS", "CDISCPILOT01", "01-701-1130", 3L, "WEEK 6", "RECIST 1.1", "OVRLRESP", "Overall Response", "PD", "PD", "INVESTIGATOR", NA, NA, "2014-03-29", 15L, + "RS", "CDISCPILOT01", "01-701-1130", 4L, "WEEK 9", "RECIST 1.1", "OVRLRESP", "Overall Response", "PD", "PD", "INVESTIGATOR", NA, NA, "2014-04-19", 18L, + "RS", "CDISCPILOT01", "01-701-1133", 2L, "WEEK 3", "RECIST 1.1", "OVRLRESP", "Overall Response", "PR", "PR", "INVESTIGATOR", NA, NA, "2012-11-18", 12L, + "RS", "CDISCPILOT01", "01-701-1133", 3L, "WEEK 6", "RECIST 1.1", "OVRLRESP", "Overall Response", "PR", "PR", "INVESTIGATOR", NA, NA, "2012-12-09", 15L, + "RS", "CDISCPILOT01", "01-701-1133", 4L, "WEEK 9", "RECIST 1.1", "OVRLRESP", "Overall Response", "PR", "PR", "INVESTIGATOR", NA, NA, "2012-12-30", 18L, + "RS", "CDISCPILOT01", "01-701-1015", 2L, "WEEK 3", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Stable Disease", "SD", "INVESTIGATOR", NA, NA, "2014-01-23", 21L, + "RS", "CDISCPILOT01", "01-701-1015", 3L, "WEEK 6", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Not Evaluable", "NE", "INVESTIGATOR", NA, NA, "2014-02", 24L, + "RS", "CDISCPILOT01", "01-701-1015", 4L, "WEEK 9", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Partial Response", "PR", "INVESTIGATOR", NA, NA, "2014-03-06", 27L, + "RS", "CDISCPILOT01", "01-701-1028", 2L, "WEEK 3", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2013-08-09", 21L, + "RS", "CDISCPILOT01", "01-701-1028", 3L, "WEEK 6", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2013-08-30", 24L, + "RS", "CDISCPILOT01", "01-701-1028", 4L, "WEEK 9", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2013-09-30", 27L, + "RS", "CDISCPILOT01", "01-701-1034", 2L, "WEEK 3", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Complete Response", "CR", "INVESTIGATOR", NA, NA, "2014-07-22", 21L, + "RS", "CDISCPILOT01", "01-701-1034", 3L, "WEEK 6", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Complete Response", "CR", "INVESTIGATOR", NA, NA, "2014-08-20", 24L, + "RS", "CDISCPILOT01", "01-701-1097", 2L, "WEEK 3", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Stable Disease", "SD", "INVESTIGATOR", NA, NA, "2014-01-22", 21L, + "RS", "CDISCPILOT01", "01-701-1115", 2L, "WEEK 3", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Partial Response", "PR", "INVESTIGATOR", NA, NA, "2012-12-21", 21L, + "RS", "CDISCPILOT01", "01-701-1115", 3L, "WEEK 6", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Partial Response", "PR", "INVESTIGATOR", NA, NA, "2013-01-11", 24L, + "RS", "CDISCPILOT01", "01-701-1115", 4L, "WEEK 9", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Complete Response", "CR", "INVESTIGATOR", NA, NA, "2013-02-01", 27L, + "RS", "CDISCPILOT01", "01-701-1118", 2L, "WEEK 3", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Stable Disease", "SD", "INVESTIGATOR", NA, NA, "2014-04-02", 21L, + "RS", "CDISCPILOT01", "01-701-1118", 3L, "WEEK 6", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Complete Response", "CR", "INVESTIGATOR", NA, NA, "2014-04-23", 24L, + "RS", "CDISCPILOT01", "01-701-1118", 4L, "WEEK 9", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Not Evaluable", "NE", "INVESTIGATOR", NA, NA, "2014-05-14", 27L, + "RS", "CDISCPILOT01", "01-701-1118", 5L, "WEEK 12", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Complete Response", "CR", "INVESTIGATOR", NA, NA, "2014-06-04", 30L, + "RS", "CDISCPILOT01", "01-701-1130", 2L, "WEEK 3", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Stable Disease", "SD", "INVESTIGATOR", NA, NA, "2014-03-08", 21L, + "RS", "CDISCPILOT01", "01-701-1130", 3L, "WEEK 6", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2014-03-29", 24L, + "RS", "CDISCPILOT01", "01-701-1130", 4L, "WEEK 9", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2014-04-19", 27L, + "RS", "CDISCPILOT01", "01-701-1133", 2L, "WEEK 3", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Partial Response", "PR", "INVESTIGATOR", NA, NA, "2012-11-18", 21L, + "RS", "CDISCPILOT01", "01-701-1133", 3L, "WEEK 6", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2012-12-09", 24L, + "RS", "CDISCPILOT01", "01-701-1133", 4L, "WEEK 9", "RECIST 1.1 - CA125", "OVRLRESP", "Overall Response", "Progressive Disease", "PD", "INVESTIGATOR", NA, NA, "2012-12-30", 27L +) %>% + mutate( + STUDYID = "CDISCPILOT01", + DOMAIN = "RS", + # RSCAT = "IMWG", + RSEVAL = "INVESTIGATOR" + ) %>% + relocate( + STUDYID, DOMAIN, USUBJID, RSSEQ, RSTESTCD, RSTEST, RSCAT, RSORRES, + RSSTRESC, RSEVAL, VISITNUM, VISIT, RSDTC + ) + +attr(rs_onco_ca125, "label") <- "Disease Response (CA125)" + +usethis::use_data(rs_onco_ca125, overwrite = TRUE) + +# Create supprs_onco_imwg ---- +supprs_onco_ca125 <- tibble::tribble( + ~STUDYID, ~RDOMAIN, ~USUBJID, ~IDVAR, ~IDVARVAL, ~QNAM, ~QLABEL, ~QVAL, + "CDISCPILOT01", "RS", "01-701-1133", "RSSEQ", 3L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1133", "RSSEQ", 6L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1133", "RSSEQ", 9L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1133", "RSSEQ", 3L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1133", "RSSEQ", 6L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1133", "RSSEQ", 9L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1133", "RSSEQ", 6L, "CANORM2X", "CA125 normal, lab increased >=2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1133", "RSSEQ", 9L, "CANORM2X", "CA125 normal, lab increased >=2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1130", "RSSEQ", 3L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1130", "RSSEQ", 6L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1130", "RSSEQ", 9L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1130", "RSSEQ", 3L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1130", "RSSEQ", 6L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1130", "RSSEQ", 9L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1130", "RSSEQ", 6L, "CNOTNORM", "CA125 not norm, lab increased >=2x nadir", "Y", + "CDISCPILOT01", "RS", "01-701-1130", "RSSEQ", 9L, "CNOTNORM", "CA125 not norm, lab increased >=2x nadir", "Y", + "CDISCPILOT01", "RS", "01-701-1028", "RSSEQ", 3L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1028", "RSSEQ", 6L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1028", "RSSEQ", 9L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1028", "RSSEQ", 6L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "N", + "CDISCPILOT01", "RS", "01-701-1028", "RSSEQ", 6L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "N", + "CDISCPILOT01", "RS", "01-701-1028", "RSSEQ", 9L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "N", + "CDISCPILOT01", "RS", "01-701-1028", "RSSEQ", 6L, "CNOTNORM", "CA125 not norm, lab increased >=2x nadir", "Y", + "CDISCPILOT01", "RS", "01-701-1028", "RSSEQ", 9L, "CNOTNORM", "CA125 not norm, lab increased >=2x nadir", "Y", + "CDISCPILOT01", "RS", "01-701-1034", "RSSEQ", 3L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1034", "RSSEQ", 6L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1034", "RSSEQ", 3L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1034", "RSSEQ", 6L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1034", "RSSEQ", 3L, "CA50RED", ">50% reduction from baseline", "Y", + "CDISCPILOT01", "RS", "01-701-1034", "RSSEQ", 6L, "CA50RED", ">50% reduction from baseline", "Y", + "CDISCPILOT01", "RS", "01-701-1097", "RSSEQ", 3L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1097", "RSSEQ", 3L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1015", "RSSEQ", 3L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1015", "RSSEQ", 6L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1015", "RSSEQ", 9L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1015", "RSSEQ", 3L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1015", "RSSEQ", 6L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1015", "RSSEQ", 9L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1015", "RSSEQ", 9L, "CA50RED", ">50% reduction from baseline", "Y", + "CDISCPILOT01", "RS", "01-701-1015", "RSSEQ", 6L, "MOUSEANT", "Received mouse antibodies", "Y", + "CDISCPILOT01", "RS", "01-701-1115", "RSSEQ", 3L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1115", "RSSEQ", 6L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1115", "RSSEQ", 9L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1115", "RSSEQ", 3L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1115", "RSSEQ", 6L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1115", "RSSEQ", 9L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1115", "RSSEQ", 3L, "CA50RED", ">50% reduction from baseline", "Y", + "CDISCPILOT01", "RS", "01-701-1115", "RSSEQ", 6L, "CA50RED", ">50% reduction from baseline", "Y", + "CDISCPILOT01", "RS", "01-701-1115", "RSSEQ", 9L, "CA50RED", ">50% reduction from baseline", "Y", + "CDISCPILOT01", "RS", "01-701-1118", "RSSEQ", 3L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1118", "RSSEQ", 6L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1118", "RSSEQ", 9L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1118", "RSSEQ", 12L, "CA125EFL", "CA-125 response evaluable", "Y", + "CDISCPILOT01", "RS", "01-701-1118", "RSSEQ", 3L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1118", "RSSEQ", 6L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1118", "RSSEQ", 9L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1118", "RSSEQ", 12L, "CA2XULRR", "CA-125 pre-treatment 2x ULRR", "Y", + "CDISCPILOT01", "RS", "01-701-1118", "RSSEQ", 3L, "CA50RED", ">50% reduction from baseline", "Y", + "CDISCPILOT01", "RS", "01-701-1118", "RSSEQ", 9L, "CA50RED", ">50% reduction from baseline", "Y", + "CDISCPILOT01", "RS", "01-701-1118", "RSSEQ", 12L, "CA50RED", ">50% reduction from baseline", "Y" + ) %>% + mutate( + STUDYID = "CDISCPILOT01", + RDOMAIN = "RS", + IDVAR = "RSSEQ", + QORIG = "CRF", + IDVARVAL = as.character(IDVARVAL) + ) %>% + relocate( + STUDYID, RDOMAIN, USUBJID, IDVAR, IDVARVAL, QNAM, QLABEL, QVAL, QORIG + ) + +attr(supprs_onco_ca125, "label") <- "Supplemental Qualifiers for RS_ONCO_CA125" + +usethis::use_data(supprs_onco_ca125, overwrite = TRUE) diff --git a/data/rs_onco_ca125.rda b/data/rs_onco_ca125.rda new file mode 100644 index 0000000000000000000000000000000000000000..607d08e87812524a35488420fec28dff2517cdb5 GIT binary patch literal 1065 zcmV+^1lIdPT4*^jL0KkKS*;UMIRF+||H%LU{!K(<|KLBr|KPvp-+({>00962&;_1) zBme~fBm{Aj1klK2WMt6L27@CA27^YK3`0N;GGLk+42+DL8UWB_VF1u*(;nMy7^CO*9OR4@sla8e>ocC#d@yPQAC>7r%!ig_=4zbP77SUHnGQPF}5?`L!I@ zrE0Q>?=1Uy6nHyYLG7ty}H(>ucAt-Eg;WvE;X)`$rL? zo}X7y<#QaiE5qAl4w_oBqZjN!y$3XH85tO|Q!i_4Rj@%d2TOUj!a|6>6=OH%6|WVR9`E>w3t`d}$htwpkjnRxQHP zF-=?K#o1-S2K!d{(P}rNR*aYp#8T$2B3MKN(vB)ZB^i>wDFjS2P5V%OQkx*~{q%az zntn@pj51-BjAJZ+H&$%4gVDRq*To+v-5ZL1NI0PHY(uT#L9>wCp$F6H__rYHLD|}a z;X%&u6z{$+C_b)7N)DtQo}IAnAGz?l_n_@QlOuVDUyR^`tF;HvgV2Ly9sAj37Ar4bT4FKd&rzPsd0LPtH)T}t=_GLqxEXAy|EVYd_txheOnKKtO+E>}K z4h}I+rFW-KqoO-i&oBEPDnCqgtFw<}chF(3&mM=WZcyrsx+jh>b#iNTWK)xZz6s_Y 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