From 7256e2235aace1db74b91ce0afce793d89002ab8 Mon Sep 17 00:00:00 2001 From: Rammprasad Ganapathy Date: Wed, 31 Jul 2024 18:59:19 +0000 Subject: [PATCH 1/4] Fix CRAN Comments --- DESCRIPTION | 19 ++++++++++--------- 1 file changed, 10 insertions(+), 9 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 9220fad8..c5767e60 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -24,17 +24,18 @@ Authors@R: c( person("Transition Technologies Science", role = c("cph", "fnd")) ) Maintainer: Rammprasad Ganapathy -Description: An EDC and Data Standard-agnostic SDTM data transformation engine - designed for SDTM programming in R. Powered by metadata sdtm.oak can - automate the conversion of raw clinical data to SDTM through standardized - mapping algorithms. SDTM is one of the required standards for data - submission to FDA (U.S.) and PMDA (Japan). SDTM standards are implemented - in accordance with the SDTM Implementation Guide as defined by CDISC - . +Description: An EDC-agnostic and data standard-agnostic SDTM data transformation engine + that provides a framework for modular programming of SDTM in R. Powered by + metadata and standard specification sdtm.oak can potentially automate the + conversion of raw clinical data to SDTM through standardized mapping + algorithms. SDTM is one of the required standards for data submission to + the FDA (U.S.) and PMDA (Japan). SDTM standards are implemented following + the SDTM Implementation Guide as defined by + CDISC . Language: en-US License: Apache License (>= 2) -BugReports: https://github.com/pharmaverse/sdtm.oak/issues -URL: https://pharmaverse.github.io/sdtm.oak/, https://github.com/pharmaverse/sdtm.oak +BugReports: https://github.com/pharmaverse/sdtm.oak/issues/ +URL: https://pharmaverse.github.io/sdtm.oak/, https://pharmaverse.github.io/sdtm.oak/ Encoding: UTF-8 LazyData: true Roxygen: list(markdown = TRUE) From 2b90b76adcc534cdafd8d5b9de97f5277c5ec724 Mon Sep 17 00:00:00 2001 From: Ram Ganapathy Date: Wed, 31 Jul 2024 12:10:48 -0700 Subject: [PATCH 2/4] Update DESCRIPTION Co-authored-by: Shiyu Chen <39443807+ShiyuC@users.noreply.github.com> --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index c5767e60..d8eaa819 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -35,7 +35,7 @@ Description: An EDC-agnostic and data standard-agnostic SDTM data transformation Language: en-US License: Apache License (>= 2) BugReports: https://github.com/pharmaverse/sdtm.oak/issues/ -URL: https://pharmaverse.github.io/sdtm.oak/, https://pharmaverse.github.io/sdtm.oak/ +URL: https://pharmaverse.github.io/sdtm.oak/ Encoding: UTF-8 LazyData: true Roxygen: list(markdown = TRUE) From 5dace28e613565b0c4cc631b10c22fcf3993e5cf Mon Sep 17 00:00:00 2001 From: Rammprasad Ganapathy Date: Wed, 31 Jul 2024 19:32:15 +0000 Subject: [PATCH 3/4] Fix pipeline failure --- man/sdtm.oak-package.Rd | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/man/sdtm.oak-package.Rd b/man/sdtm.oak-package.Rd index e24ced91..1bd18f1f 100644 --- a/man/sdtm.oak-package.Rd +++ b/man/sdtm.oak-package.Rd @@ -6,14 +6,14 @@ \alias{sdtm.oak-package} \title{sdtm.oak: SDTM Data Transformation Engine} \description{ -An EDC and Data Standard-agnostic SDTM data transformation engine designed for SDTM programming in R. Powered by metadata sdtm.oak can automate the conversion of raw clinical data to SDTM through standardized mapping algorithms. SDTM is one of the required standards for data submission to FDA (U.S.) and PMDA (Japan). SDTM standards are implemented in accordance with the SDTM Implementation Guide as defined by CDISC \url{https://www.cdisc.org/standards/foundational/sdtmig}. +An EDC-agnostic and data standard-agnostic SDTM data transformation engine that provides a framework for modular programming of SDTM in R. Powered by metadata and standard specification sdtm.oak can potentially automate the conversion of raw clinical data to SDTM through standardized mapping algorithms. SDTM is one of the required standards for data submission to the FDA (U.S.) and PMDA (Japan). SDTM standards are implemented following the SDTM Implementation Guide as defined by CDISC \url{https://www.cdisc.org/standards/foundational/sdtmig}. } \seealso{ Useful links: \itemize{ \item \url{https://pharmaverse.github.io/sdtm.oak/} - \item \url{https://github.com/pharmaverse/sdtm.oak} - \item Report bugs at \url{https://github.com/pharmaverse/sdtm.oak/issues} + \item \url{https://pharmaverse.github.io/sdtm.oak/} + \item Report bugs at \url{https://github.com/pharmaverse/sdtm.oak/issues/} } } From 6bb31c1dd959a77a8f62e4792de48987d3c4d310 Mon Sep 17 00:00:00 2001 From: Rammprasad Ganapathy Date: Wed, 31 Jul 2024 19:32:57 +0000 Subject: [PATCH 4/4] fix pipeline failure --- man/sdtm.oak-package.Rd | 1 - 1 file changed, 1 deletion(-) diff --git a/man/sdtm.oak-package.Rd b/man/sdtm.oak-package.Rd index 1bd18f1f..e84b5615 100644 --- a/man/sdtm.oak-package.Rd +++ b/man/sdtm.oak-package.Rd @@ -11,7 +11,6 @@ An EDC-agnostic and data standard-agnostic SDTM data transformation engine that \seealso{ Useful links: \itemize{ - \item \url{https://pharmaverse.github.io/sdtm.oak/} \item \url{https://pharmaverse.github.io/sdtm.oak/} \item Report bugs at \url{https://github.com/pharmaverse/sdtm.oak/issues/} }