DESCRIPTION

Package: rphenoscape
Type: Package
Title: Semantically Rich Phenotypic Traits from the Phenoscape Knowledgebase
Version: 0.3.0
Authors@R: c(person("Hong", "Xu", email = "xuhong713@gmail.com", role = "aut"),
  person("Hilmar", "Lapp", email = "hilmar.lapp@duke.edu", role = c("cre", "aut"),
         comment = c(ORCID="0000-0001-9107-0714")),
  person("John", "Bradley", email = "john.bradley@duke.edu", role = "aut",
         comment = c(ORCID="0000-0003-3858-848X")))
Description: Provides convenient access to the data, ontologies, and semantics-based
  analytics offered by the Phenoscape Knowledgebase (KB) API. The KB integrates
  morphological trait data curated from phylogenetic systematics studies with
  morphological phenotypes of model organism gene knock-outs, all linked to the
  same shared ontologies in the Entity-Quality (EQ) formalism. The available
  capabilities include finding ontology terms; finding studies by taxon and anatomical
  concepts, and obtaining their trait matrices; finding ontological phenotype
  expressions; generating synthetic presence-absence trait matrices; obtaining
  anatomical presence-absence dependency matrices; and computing semantic similarity
  metrics between traits.
License: MIT + file LICENSE
LazyData: TRUE
URL: https://github.com/phenoscape/rphenoscape, http://rphenoscape.phenoscape.org
BugReports: https://github.com/phenoscape/rphenoscape/issues
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
Depends: 
    R (>= 4.0.0)
Imports: 
    jsonlite,
    httr,
    dplyr,
    rlang,
    methods,
    stringi,
    RNeXML (>= 2.4.0)
Suggests: 
    roxygen2,
    knitr,
    testthat,
    plyr,
    rmarkdown
Language: en-US
Encoding: UTF-8
RoxygenNote: 7.2.0