Dockerfile

  
FROM nvidia/cuda:11.2.2-base-ubuntu20.04

ENV CUDA_VERSION=11.2.2
ENV NCCL_VERSION=2.7.8
ENV NVIDIA_VISIBLE_DEVICES=all
ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility
ENV NVIDIA_REQUIRE_CUDA=cuda>=11.1 brand=tesla,driver>=418,driver<419 brand=tesla,driver>=440,driver<441 brand=tesla,driver>=450,driver<451
ENV CUDA_HOME=/usr/local/cuda
ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CUDA_HOME/lib64:$CUDA_HOME/extras/CUPTI/lib64:$CUDA_HOME/lib64/libnvblas.so:
ENV LIBRARY_PATH=/usr/local/cuda/lib64/stubs
ENV NVBLAS_CONFIG_FILE=/etc/nvblas.conf
ENV WORKON_HOME=/opt/venv
ENV PYTHON_VENV_PATH=/opt/venv/reticulate
ENV RETICULATE_MINICONDA_ENABLED=TRUE
ENV PATH=${PYTHON_VENV_PATH}/bin:${CUDA_HOME}/bin:/usr/local/nviida/bin:${PATH}:/usr/local/texlive/bin/x86_64-linux

ENV S6_VERSION=v2.0.0.1
ENV RSTUDIO_VERSION=1.3.959
ENV PATH=/usr/lib/rstudio-server/bin:$PATH

ENV R_VERSION=4.0.4
ENV TERM=xterm
ENV LC_ALL=en_US.UTF-8
ENV R_HOME=/usr/local/lib/R
ENV CRAN=https://packagemanager.rstudio.com/all/__linux__/focal/latest
ENV TZ=Etc/UTC

ARG UBUNTU_VERSION=focal 
ARG R_HOME=/usr/lib/R
ARG DEBIAN_FRONTEND=noninteractive
ENV DEBIAN_FRONTEND=noninteractive 

# Install dependencies
RUN apt-get update && apt-get install -y \
    curl \
    ca-certificates \
    dumb-init \
    htop \
    sudo \
    gcc \
    bzip2 \
    libx11-6 \
    locales \
    man \
    git \
    procps \
    openssh-client \
    lsb-release \
  && rm -rf /var/lib/apt/lists/*


RUN sed -i "s/# en_US.UTF-8/en_US.UTF-8/" /etc/locale.gen \
    && locale-gen

ENV LANG=en_US.UTF-8
RUN adduser --gecos '' --disabled-password rstudio && \
    echo "rstudio ALL=(ALL) NOPASSWD:ALL" >> /etc/sudoers.d/nopasswd

RUN ARCH="$(dpkg --print-architecture)" && \
    curl -fsSL "https://github.com/boxboat/fixuid/releases/download/v0.4.1/fixuid-0.4.1-linux-$ARCH.tar.gz" | tar -C /usr/local/bin -xzf - && \
    chown root:root /usr/local/bin/fixuid && \
    chmod 4755 /usr/local/bin/fixuid && \
    mkdir -p /etc/fixuid && \
    printf "user: rstudio\ngroup: rstudio\n" > /etc/fixuid/config.yml

COPY installers /installers
COPY entrypoint.sh /usr/bin/entrypoint.sh

RUN bash /installers/install_R.sh

# R_cuda cofig
#COPY config_R_cuda.sh /tmp/config_R_cuda.sh
#RUN config_R_cuda.sh

# Rstudio
RUN bash /installers/install_rstudio.sh

# Pandoc
RUN bash /installers/install_pandoc.sh

EXPOSE 8888
EXPOSE 8787

#USER 1000
#ENV USER=coder
COPY run_simple.sh /usr/run_simple.sh

ENTRYPOINT ["bash","/usr/run_simple.sh"]