environment.txt

# DeepMedic needs certain libraries (see documentation). The libraries should have been installed by a "python setup.py install" command.
# This file gives the flexibility to add the libraries manually to the path. Useful if they are installed in an arbitrary place in the filesystem.
  
# This file will be parsed by "deepMedicRun.py" as a python script. The specified paths are pre-pended to the path. Thus they take priority over other installed versions.

# Usage: 
# To manually add the path to a library, un-comment the corresponding line (remove #) and add the path.
# Note-1: Python grammar and structure must be followed in this file.
# Note-2: Leave the naming of the variables unchanged.

#=============== LIBRARIES ====================
#Theano is the main deep-learning library used. Version >= 0.8 required. Link: http://deeplearning.net/software/theano/
#path_to_theano = '/path/to/Theano/'

#Nose is needed by Theano for its unit tests. Link: https://pypi.python.org/pypi/nose/
#path_to_nose = '/path/to/nose_installation'

#NiBabel is used for loading/saving NIFTIs. Link: http://nipy.org/nibabel/
#path_to_nibabel = '/path/to/nibabel'

#Parallel-Python library is required, as we extract training samples in parallel with gpu training. Link: http://www.parallelpython.com/
#path_to_parallelPython = '/path/to/ppBuild'