Tutorials for STREAM2 https://github.com/pinellolab/STREAM2
In tutorial_notebooks:
-
How to infer (high-dimensional) trajectories for multi-omic datasets:
multiomics.ipynb -
How to use categorical labels to supervise trajectory inference:
supervision_categorical.ipynb -
How to use ordinal labels to supervise trajectory inference:
supervision_ordinal.ipynb -
How to infer disconnected trajectories:
complex_structure.ipynb
In manuscript_notebooks all notebooks and scripts to reproduce manuscript figures
The data folder should be downloaded from https://www.dropbox.com/scl/fo/jk74hp3fsxws6eg5gkppj/h?rlkey=0ezrxofoqr1kezxuhn9g8ifvx&dl=0