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adding example guide metadata for tiling screen
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jykr committed Sep 27, 2023
1 parent c0a94ea commit 04bbea0
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31 changes: 31 additions & 0 deletions tests/data/test_guide_info_tiling.csv
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name,Region,pos,strand,sequence,Reporter,barcode,5-nt PAM,genomic_pos,pos_seq,guide_len,start_pos,target_start,masked_sequence,masked_barcode,target_group,chrom,edit_rate
5' UTR+pro_181_neg,5' UTR+pro,181,neg,ATTTACAGCATTTCAATGTG,CACGTCATTTACAGCATTTCAATGTGAGGTTT,GTAT,AGGTT,11200119.0,CACATTGAAATGCTGTAAAT,20,11200105,5.0,GTTTGCGGCGTTTCGGTGTG,GTGT,5' UTR+pro,chr19,
5' UTR+pro_181_pos,5' UTR+pro,181,pos,ATGCTGTAAATGACGTGGGC,ATTGAAATGCTGTAAATGACGTGGGCCCCGAG,TGTT,CCCGA,11200119.0,ATGCTGTAAATGACGTGGGC,20,11200114,5.0,GTGCTGTGGGTGGCGTGGGC,TGTT,5' UTR+pro,chr19,
5' UTR+pro_184_neg,5' UTR+pro,184,neg,TCATTTACAGCATTTCAAT,GCCCACGTCATTTACAGCATTTCAATGTGAGG,TTCG,GTGAG,11200122.0,ATTGAAATGCTGTAAATGA,19,11200108,4.0,TCGTTTGCGGCGTTTCGGT,TTCG,5' UTR+pro,chr19,0.6097560975609756
5' UTR+pro_184_pos,5' UTR+pro,184,pos,CTGTAAATGACGTGGGCCCC,GAAATGCTGTAAATGACGTGGGCCCCGAGTGC,ACAA,GAGTG,11200122.0,CTGTAAATGACGTGGGCCCC,20,11200117,5.0,CTGTGGGTGGCGTGGGCCCC,GCGG,5' UTR+pro,chr19,0.3915132105684548
5' UTR+pro_187_neg,5' UTR+pro,187,neg,CACGTCATTTACAGCATTTC,GGGGCCCACGTCATTTACAGCATTTCAATGTG,CATG,AATGT,11200125.0,GAAATGCTGTAAATGACGTG,20,11200111,5.0,CGCGTCGTTTGCGGCGTTTC,CGTG,5' UTR+pro,chr19,0.7364341085271318
5' UTR+pro_187_pos,5' UTR+pro,187,pos,TAAATGACGTGGGCCCCGAG,ATGCTGTAAATGACGTGGGCCCCGAGTGCAAT,ATGA,TGCAA,11200125.0,TAAATGACGTGGGCCCCGAG,20,11200120,5.0,TGGGTGGCGTGGGCCCCGGG,GTGG,5' UTR+pro,chr19,0.3020937188434696
5' UTR+pro_190_neg,5' UTR+pro,190,neg,CCCACGTCATTTACAGCAT,CTCGGGGCCCACGTCATTTACAGCATTTCAAT,TACT,TTCAA,11200128.0,ATGCTGTAAATGACGTGGG,19,11200114,4.0,CCCGCGTCGTTTGCGGCGT,TGCT,5' UTR+pro,chr19,0.5730337078651685
5' UTR+pro_190_pos,5' UTR+pro,190,pos,ATGACGTGGGCCCCGAGTGC,CTGTAAATGACGTGGGCCCCGAGTGCAATCGC,CGAA,AATCG,11200128.0,ATGACGTGGGCCCCGAGTGC,20,11200123,5.0,GTGGCGTGGGCCCCGGGTGC,CGGG,5' UTR+pro,chr19,0.3092926490984743
5' UTR+pro_193_neg,5' UTR+pro,193,neg,GGGCCCACGTCATTTACAG,GCACTCGGGGCCCACGTCATTTACAGCATTTC,AGGA,CATTT,11200131.0,CTGTAAATGACGTGGGCCC,19,11200117,4.0,GGGCCCGCGTCGTTTGCGG,GGGG,5' UTR+pro,chr19,0.28800755429650615
5' UTR+pro_193_pos,5' UTR+pro,193,pos,ACGTGGGCCCCGAGTGCAAT,TAAATGACGTGGGCCCCGAGTGCAATCGCGGG,CTAT,CGCGG,11200131.0,ACGTGGGCCCCGAGTGCAAT,20,11200126,5.0,GCGTGGGCCCCGGGTGCGGT,CTGT,5' UTR+pro,chr19,
5' UTR+pro_196_neg,5' UTR+pro,196,neg,CTCGGGGCCCACGTCATTTA,ATTGCACTCGGGGCCCACGTCATTTACAGCAT,TGAT,CAGCA,11200134.0,TAAATGACGTGGGCCCCGAG,20,11200120,5.0,CTCGGGGCCCGCGTCGTTTG,TGGT,5' UTR+pro,chr19,
5' UTR+pro_196_pos,5' UTR+pro,196,pos,TGGGCCCCGAGTGCAATCGC,ATGACGTGGGCCCCGAGTGCAATCGCGGGAAG,CTAA,GGGAA,11200134.0,TGGGCCCCGAGTGCAATCGC,20,11200129,5.0,TGGGCCCCGGGTGCGGTCGC,CTGG,5' UTR+pro,chr19,
5' UTR+pro_199_neg,5' UTR+pro,199,neg,CACTCGGGGCCCACGTCAT,GCGATTGCACTCGGGGCCCACGTCATTTACAG,AATC,TTACA,11200137.0,ATGACGTGGGCCCCGAGTG,19,11200123,4.0,CGCTCGGGGCCCGCGTCGT,GGTC,5' UTR+pro,chr19,
5' UTR+pro_199_pos,5' UTR+pro,199,pos,CCCCGAGTGCAATCGCGGG,ACGTGGGCCCCGAGTGCAATCGCGGGAAGCCA,TAAG,AAGCC,11200137.0,CCCCGAGTGCAATCGCGGG,19,11200133,4.0,CCCCGGGTGCGGTCGCGGG,TGGG,5' UTR+pro,chr19,0.42303306727480045
5' UTR+pro_202_neg,5' UTR+pro,202,neg,ATTGCACTCGGGGCCCACGT,CCCGCGATTGCACTCGGGGCCCACGTCATTTA,TAAA,CATTT,11200140.0,ACGTGGGCCCCGAGTGCAAT,20,11200126,5.0,GTTGCGCTCGGGGCCCGCGT,TGGG,5' UTR+pro,chr19,0.713527851458886
5' UTR+pro_202_pos,5' UTR+pro,202,pos,CCGAGTGCAATCGCGGGAAG,TGGGCCCCGAGTGCAATCGCGGGAAGCCAGGG,AGAT,CCAGG,11200140.0,CCGAGTGCAATCGCGGGAAG,20,11200135,5.0,CCGGGTGCGGTCGCGGGGGG,GGGT,5' UTR+pro,chr19,0.001303780964797914
5' UTR+pro_205_neg,5' UTR+pro,205,neg,CGATTGCACTCGGGGCCCA,CTTCCCGCGATTGCACTCGGGGCCCACGTCAT,GTAG,CGTCA,11200143.0,TGGGCCCCGAGTGCAATCG,19,11200129,4.0,CGGTTGCGCTCGGGGCCCG,GTGG,5' UTR+pro,chr19,0.23636363636363636
5' UTR+pro_205_pos,5' UTR+pro,205,pos,AGTGCAATCGCGGGAAGCCA,GCCCCGAGTGCAATCGCGGGAAGCCAGGGTTT,GCGG,GGGTT,11200143.0,AGTGCAATCGCGGGAAGCCA,20,11200138,5.0,GGTGCGGTCGCGGGGGGCCG,GCGG,5' UTR+pro,chr19,0.40046838407494145
5' UTR+pro_208_neg,5' UTR+pro,208,neg,CCCGCGATTGCACTCGGGGC,TGGCTTCCCGCGATTGCACTCGGGGCCCACGT,CTGC,CCACG,11200146.0,GCCCCGAGTGCAATCGCGGG,20,11200132,5.0,CCCGCGGTTGCGCTCGGGGC,CTGC,5' UTR+pro,chr19,0.16862037871956717
5' UTR+pro_208_pos,5' UTR+pro,208,pos,CAATCGCGGGAAGCCAGGG,CCGAGTGCAATCGCGGGAAGCCAGGGTTTCCA,AAAG,TTTCC,11200146.0,CAATCGCGGGAAGCCAGGG,19,11200142,4.0,CGGTCGCGGGGGGCCGGGG,GGGG,5' UTR+pro,chr19,0.0024813895781637717
5' UTR+pro_211_neg,5' UTR+pro,211,neg,CTTCCCGCGATTGCACTCGG,CCCTGGCTTCCCGCGATTGCACTCGGGGCCCA,ACAG,GGCCC,11200149.0,CCGAGTGCAATCGCGGGAAG,20,11200135,5.0,CTTCCCGCGGTTGCGCTCGG,GCGG,5' UTR+pro,chr19,
5' UTR+pro_211_pos,5' UTR+pro,211,pos,ATCGCGGGAAGCCAGGGTTT,AGTGCAATCGCGGGAAGCCAGGGTTTCCAGCT,ATAA,CCAGC,11200149.0,ATCGCGGGAAGCCAGGGTTT,20,11200144,5.0,GTCGCGGGGGGCCGGGGTTT,GTGG,5' UTR+pro,chr19,
5' UTR+pro_214_neg,5' UTR+pro,214,neg,TGGCTTCCCGCGATTGCACT,AAACCCTGGCTTCCCGCGATTGCACTCGGGGC,CCGG,CGGGG,11200152.0,AGTGCAATCGCGGGAAGCCA,20,11200138,5.0,TGGCTTCCCGCGGTTGCGCT,CCGG,5' UTR+pro,chr19,
5' UTR+pro_214_pos,5' UTR+pro,214,pos,CGGGAAGCCAGGGTTTCCA,GCAATCGCGGGAAGCCAGGGTTTCCAGCTAGG,CTAG,GCTAG,11200152.0,CGGGAAGCCAGGGTTTCCA,19,11200148,4.0,CGGGGGGCCGGGGTTTCCG,CTGG,5' UTR+pro,chr19,0.37727666955767564
5' UTR+pro_217_neg,5' UTR+pro,217,neg,CCCTGGCTTCCCGCGATTGC,TGGAAACCCTGGCTTCCCGCGATTGCACTCGG,TATT,ACTCG,11200155.0,GCAATCGCGGGAAGCCAGGG,20,11200141,5.0,CCCTGGCTTCCCGCGGTTGC,TGTT,5' UTR+pro,chr19,
5' UTR+pro_217_pos,5' UTR+pro,217,pos,GAAGCCAGGGTTTCCAGCT,ATCGCGGGAAGCCAGGGTTTCCAGCTAGGACA,GAAT,AGGAC,11200155.0,GAAGCCAGGGTTTCCAGCT,19,11200151,4.0,GGGGCCGGGGTTTCCGGCT,GGGT,5' UTR+pro,chr19,0.1580020387359837
5' UTR+pro_220_neg,5' UTR+pro,220,neg,AAACCCTGGCTTCCCGCGAT,AGCTGGAAACCCTGGCTTCCCGCGATTGCACT,AGTC,TGCAC,11200158.0,ATCGCGGGAAGCCAGGGTTT,20,11200144,5.0,GGGCCCTGGCTTCCCGCGGT,GGTC,5' UTR+pro,chr19,0.3084982537834691
5' UTR+pro_220_pos,5' UTR+pro,220,pos,AGCCAGGGTTTCCAGCTAGG,GCGGGAAGCCAGGGTTTCCAGCTAGGACACAG,TGTA,ACACA,11200158.0,AGCCAGGGTTTCCAGCTAGG,20,11200153,5.0,GGCCGGGGTTTCCGGCTGGG,TGTG,5' UTR+pro,chr19,0.2347266881028939
5' UTR+pro_223_neg,5' UTR+pro,223,neg,TGGAAACCCTGGCTTCCCGC,CCTAGCTGGAAACCCTGGCTTCCCGCGATTGC,TCAT,GATTG,11200161.0,GCGGGAAGCCAGGGTTTCCA,20,11200147,5.0,TGGGGGCCCTGGCTTCCCGC,TCGT,5' UTR+pro,chr19,0.172147001934236
5' UTR+pro_223_pos,5' UTR+pro,223,pos,CAGGGTTTCCAGCTAGGACA,GGAAGCCAGGGTTTCCAGCTAGGACACAGCAG,CTTG,CAGCA,11200161.0,CAGGGTTTCCAGCTAGGACA,20,11200156,5.0,CGGGGTTTCCGGCTGGGGCG,CTTG,5' UTR+pro,chr19,

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