From 08eb3cb5c3ecc4c9db1d82bc2964f7d5419fc4c1 Mon Sep 17 00:00:00 2001 From: jykr Date: Thu, 11 Apr 2024 15:34:20 -0400 Subject: [PATCH] set separate directory for test count intermediate files --- tests/test_count.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/tests/test_count.py b/tests/test_count.py index 0a56800..ff5168c 100755 --- a/tests/test_count.py +++ b/tests/test_count.py @@ -33,7 +33,7 @@ def test_guide_count(): @pytest.mark.order(104) def test_count_samples(): - cmd = "bean count-samples -i tests/data/sample_list.csv -b A -f tests/data/test_guide_info.csv -o tests/test_res/ -r --guide-start-seq=GGAAAGGACGAAACACCG" + cmd = "bean count-samples -i tests/data/sample_list.csv -b A -f tests/data/test_guide_info.csv -o tests/test_res/var/ -r --guide-start-seq=GGAAAGGACGAAACACCG" try: subprocess.check_output( cmd, @@ -46,7 +46,7 @@ def test_count_samples(): @pytest.mark.order(105) def test_count_samples_bcstart(): - cmd = "bean count-samples -i tests/data/sample_list.csv -b A -f tests/data/test_guide_info.csv -o tests/test_res/ -r --barcode-start-seq=GGAA" + cmd = "bean count-samples -i tests/data/sample_list.csv -b A -f tests/data/test_guide_info.csv -o tests/test_res/var2/ -r --barcode-start-seq=GGAA" try: subprocess.check_output( cmd, @@ -84,7 +84,7 @@ def test_barcode_start_idx(): @pytest.mark.order(106) def test_count_samples_tiling(): - cmd = "bean count-samples -i tests/data/sample_list_tiling.csv -b A -f tests/data/test_guide_info_tiling_chrom.csv -o tests/test_res/ -r" + cmd = "bean count-samples -i tests/data/sample_list_tiling.csv -b A -f tests/data/test_guide_info_tiling_chrom.csv -o tests/test_res/tiling/ -r" try: subprocess.check_output( cmd, @@ -97,7 +97,7 @@ def test_count_samples_tiling(): @pytest.mark.order(107) def test_count_chroms(): - cmd = "bean count --R1 tests/data/test_tiling_R1.fastq --R2 tests/data/test_tiling_R2.fastq -b A -f tests/data/test_guide_info_tiling_chrom.csv -o tests/test_res/ -r" + cmd = "bean count --R1 tests/data/test_tiling_R1.fastq --R2 tests/data/test_tiling_R2.fastq -b A -f tests/data/test_guide_info_tiling_chrom.csv -o tests/test_res/tiling_chrom/ -r" try: subprocess.check_output( cmd,