From 05623b3a65c2c8e9e56bd239460939d26348186c Mon Sep 17 00:00:00 2001 From: Jayoung Kim Ryu Date: Mon, 2 Oct 2023 14:16:34 -0400 Subject: [PATCH 1/2] Update README.md --- README.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/README.md b/README.md index b90d9ed..a40881f 100644 --- a/README.md +++ b/README.md @@ -274,3 +274,7 @@ Python package `bean` supports multiple data wrangling functionalities for `Repo * Installation takes 14.4 mins after pytorch installation with pytorch in Dell XPS 13 Ubuntu WSL. * `bean-run` takes 4.6 mins with `--scale-by-acc` tag in Dell XPS 13 Ubuntu WSL for variant screen dataset with 3455 guides and 6 replicates with 4 sorting bins. * Full pipeline takes 90.1s in GitHub Action for toy dataset of 2 replicates and 30 guides. + +## Citation +If you have used BEAN, please cite +Ryu, J. et al. Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification. medRxiv (2023) doi:10.1101/2023.09.08.23295253 From 3a79fd68382e6752a6af20851bd14e202c4f7230 Mon Sep 17 00:00:00 2001 From: Jayoung Kim Ryu Date: Mon, 2 Oct 2023 14:17:07 -0400 Subject: [PATCH 2/2] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index a40881f..c532eca 100644 --- a/README.md +++ b/README.md @@ -276,5 +276,5 @@ Python package `bean` supports multiple data wrangling functionalities for `Repo * Full pipeline takes 90.1s in GitHub Action for toy dataset of 2 replicates and 30 guides. ## Citation -If you have used BEAN, please cite +If you have used BEAN, please cite: Ryu, J. et al. Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification. medRxiv (2023) doi:10.1101/2023.09.08.23295253