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Merge branch 'dev' of https://github.com/pinellolab/crispr-bean into dev
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jykr committed Oct 6, 2023
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Expand Up @@ -147,7 +147,7 @@ Optional columns are not required but can be provided for compatibility with `be

## `bean-qc`: QC of reporter screen data
```bash
bean-count-samples \
bean-qc \
my_sorting_screen.h5ad `# Input ReporterScreen .h5ad file path` \
-o my_sorting_screen_masked.h5ad `# Output ReporterScreen .h5ad file path` \
-r qc_report_my_sorting_screen `# Prefix for QC report`
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