1.1.13

• removes individual files from report
• adds archive of individual files to report

1.1.12

• fixes column order in taxonomy plots in the summary report

1.1.11

• Updates the raw quality calculation rule to ensure nothing is run in the background

Updates report

• Includes omitted samples in report's summary table
• Lowers the number of BLAST hits from 25 to 12 (per query)

1.1.9

• mafft replaces clustalo to carry out multiple sequence alignment
• the report has been updated and now includes a sample count table
• the ITS LCA method has been significantly sped up
• the environment has been updated to reflect changes

v1.1.8

• annotate now supports wildcards in addition to directory for sample files
• download subcommand was added to only download reference data
• flat files included in report are now gzip compressed
• files omitted include the number of paired sequences

v1.1.7: Merge pull request #12 from pnnl/colinbrislawn-patch-2

• updates fasttree command to use threaded FastTreeMP command

v1.1.6

• sets threads of trimming to 1/4 of total threads to optimize concurrent processing of samples through this IO bound task

v1.1.5

• fixes bug when analyzing many individual samples where command line would be too long to concatenate them.
• fixes bug where --notemp declaration would be ignored on success

Updates VSEARCH

• bug fix in LCA