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MITObim for rootless docker & docker compose

You can find the original version of MITObim here.

Usage

  1. Open docker-compose.yml and edit the path to the data directory.

  2. Build and run image.

$ docker compose up -d
  1. Get into bash to run MITObim pipeline.
$ docker compose exec mitobim bash
  1. Remove image.
$ docker compose down