This repository contains the ongoing development of SSAM, including bugfixes, maintained by the Computational Omics Laboratory at Pusan National University (https://pnucolab.com).
If you are looking for the published version in 2021, please refer to https://github.com/HiDiHlabs/ssam.
Currently SSAM was only tested with Python 3 in Linux environment. For details, please follow the instructions here: https://ssam.readthedocs.io/en/release/tldr.html#installation
https://ssam.readthedocs.io/en/release/tldr.html#installation
Jeongbin Park, Wonyl Choi, Sebastian Tiesmeyer, Brian Long, Lars E. Borm, Emma Garren, Thuc Nghi Nguyen, Bosiljka Tasic, Simone Codeluppi, Tobias Graf, Matthias Schlesner, Oliver Stegle, Roland Eils & Naveed Ishaque. "Cell segmentation-free inference of cell types from in situ transcriptomics data." Nature Communications 12, 3545 (2021).
Copyright (C) 2018 Jeongbin Park and Wonyl Choi
This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License along with this program. If not, see https://www.gnu.org/licenses/.