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Add workflows for QuPath, napari and ilastik #5

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pr4deepr opened this issue Jan 28, 2022 · 1 comment

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pr4deepr commented Jan 28, 2022 •

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Add neuron subtype segmentation workflow in QuPath
Add neuron segmentation , subtype segmentation using StarDist and downstream analysis using pyclesperanto assistant in napari

pr4deepr changed the title ~~Add workflows for QuPath and napari~~ Add workflows for QuPath, napari and ilastik

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pr4deepr commented Mar 2, 2022

ilastik has a nice workflow for counting cells that is perfect for enteric neurons:
https://www.ilastik.org/documentation/counting/counting

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