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<!DOCTYPE html>
<html>
<head>
<meta charset='utf-8' />
<meta http-equiv="X-UA-Compatible" content="chrome=1" />
<meta name="description" content="Preprocessed Connectomes Project" />
<link rel="stylesheet" href="stylesheets/bib-publication-list.css"/>
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<title>ADHD-200 Preprocessed</title>
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<header>
<!--<a id="forkme_banner" href="https://github.com/ccraddock/abide_preproc">View on GitHub</a>-->
<h1 id="project_title">ADHD-200 Preprocessed</h1><br>
<div id='cssmenu'>
<ul>
<li class='active'><a href='index.html'>Overview</a></li>
<li class='active'><a href='download.html'>Download</a></li>
<li class='active'><a href='http://neurobureau.projects.nitrc.org/ADHD200/Data.html' target="_blank">Pipelines</a></li>
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<li class='active'><a href='https://groups.google.com/d/forum/pcp_forum' target="_blank">Forum</a></li>
<li class='active'><a href='publications.html'>Publications</a></li>
<li class='active'><a href='https://preprocessed-connectomes-project.github.io'>PCP</a></li>
<li class='active'><a href='https://github.com/preprocessed-connectomes-project' target="_blank">Github</a></li>
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<img src="images/ADHD200_logo.png" align="left" width=30%>
<p>A consortium of the <a href="http://fcon_1000.projects.nitrc.org/indi">International Neuroimaging Datasharing Initiative (INDI)</a>, the <a href="http://fcon_1000.projects.nitrc.org/indi/adhd200">ADHD-200 Sample</a> is a collaboration of 8 international imaging sites that have aggregated and are openly sharing neuroimaging data from <strong>362 children and adolescents diagnosed with ADHD</strong> and <strong>585 typically developing controls</strong>. These 947 datasets are composed of structural and resting state functional MRI data along with phenotypic information.</a></p>
<p> In 2011, the ADHD-200 Consortium hosted a competition to identify biomarkers of attention deficit/hyperactivity disorder (ADHD) using the ADHD-200 data. The <a href="http://preprocessed-connectomes-project.github.io/" target="_blank">Preprocessed Connectomes Project (PCP)</a> began as an initiative to make the competition accessible to a broader range of researchers by preprocessing the data and openly sharing the results. The data from this initiative was used by many of the participants in the competition, including the winning team, and has resulted in several publications, MS theses, PhD disertations, and even patents (see <a href="publications.html" target="_blank">reference list</a>). </p>
<p>The ADHD-200 data was preprocessed by three different teams using their preferred tools. The <a href="http://www.nitrc.org/plugins/mwiki/index.php/neurobureau:AthenaPipeline" target="_blank">Athena</a> pipeline is based on tools from the <a href="https://afni.nimh.nih.gov/" target="_blank">AFNI</a> and <a href="http://fsl.fmrib.ox.ac.uk/fsl" target="_blank">FSL</a> software packages, the <a href="http://www.nitrc.org/plugins/mwiki/index.php?title=neurobureau:NIAKPipeline" target="_blank">NIAK</a> pipeline uses the <a href="http://www.nitrc.org/projects/niak/" target="_blank">Neuroimaging Analysis Kit</a> on <a href="http://www.cbrain.mcgill.ca/" target="_blank">CBRAIN</a>, and the <a href="http://www.nitrc.org/plugins/mwiki/index.php?title=neurobureau:BurnerPipeline" target="_blank">Burner</a> pipeline performed voxel-based-morphometry processing using <a href="http://www.fil.ion.ucl.ac.uk/spm/" target="_blank">SPM8</a>. The preprocessed results can be downloaded from <a href="http://www.nitrc.org/frs/?group_id=383" target="_blank">NITRC</a> and from an Amazon Web Services Public S3 Bucket (see <a href="download.html" target="_blank">download instructions</a>).</p>
<p>In accordance with HIPAA guidelines and 1000 Functional Connectomes Project / INDI protocols, all datasets are anonymous, with no protected health information included.</p>
<h4>Citation</h4>
<p>If you use ADHD-200 preprocessed data in your research, please cite it in your publications along with the specific pipeline that you used:</p>
<p>Pierre Bellec, Carlton Chu, François Chouinard-Decorte, Yassine Benhajali, Daniel S. Margulies, R. Cameron Craddock (2017). The Neuro Bureau ADHD-200 Preprocessed repository. <em>NeuroImage, 144, Part B, pp. 275 - 286.</em> doi:<a href="http://dx.doi.org/10.1016/j.neuroimage.2016.06.034">10.1016/j.neuroimage.2016.06.034</a></p>
<p>Also, please let us know about your publication so that we can add it to our list of Publications.</p>
<h4>Pipeline Scripts</h4>
<p>Bash scripts that implement the Athena pipeline are available <a href="https://github.com/preprocessed-connectomes-project/adhd200_athena_scripts" target="_blank">here</a>.</p>
<p>Scripts that run in Matlab and Octave for the NIAK pipeline can be found <a href="https://github.com/SIMEXP/niak">here</a>.</p>
<br>
<h3>
<a name="authors-and-contributors" class="anchor" href="#authors-and-contributors"><span class="octicon octicon-link"></span></a>Credits</h3>
<hr></hr>
<p>
<strong>ADHD-200 Preprocessed Founders</strong><br>
<a href="mailto:[email protected]">R. Cameron Craddock</a><sup>1,2,3</sup>,
<a href="mailto:[email protected]">Pierre Bellec</a><sup>1,4,5</sup><br><br>
<strong>Data Processing</strong><br>
<i><u>The Athena Pipeline:</u></i>
<a href="mailto:[email protected]">R. Cameron
Craddock</a><sup>1,2,3</sup><br>
<i><u>The Burner Pipeline:</u></i>
<a href="mailto:[email protected]">Carlton Chu</a><sup>1,6</sup><br>
<i><u>The NIAK Pipeline:</u></i> Francois Chouinard-Decorte<sup>1,4,7</sup>,
<a href="mailto:[email protected]">Pierre Bellec</a><sup>1,4,5</sup><br><br>
<strong>Special thanks to the members of the ADHD-200 consortium, particularly Dr. Michael Milham<sup>2,3</sup>, for their valuable advice and support.</strong>
</p>
<hr></hr>
<p><small>
<sup>1</sup><a href="http://www.childmind.org/en/center-for-developing-brain/">The Neuro Bureau</a>,
<sup>2</sup><a href="http://www.childmind.org/en/center-for-developing-brain/">Center for the Developing Brain</a>, Child Mind Institute</a>, New York, New York, United States of America,
<sup>3</sup><a href="http://www.rfmh.org/nki/">Nathan S. Kline Institute for Psychiatric Research</a>, Orangeburg, New York, United States of America,
<sup>4</sup><a href="http://www.criugm.qc.ca/">Centre de recherche de l'institut de gériatrie de Montréal</a>, Montréal, Québec, Canada,
<sup>5</sup><a href="http://diro.umontreal.ca/accueil/">Département d'informatique et de recherche
opérationnelle</a>, Université de Montréal, Montréal, Québec, Canada,
<sup>6</sup><a href="https://deepmind.com/">Google DeepMind</a>, London, UK,
<sup>7</sup><a href="http://www.bic.mni.mcgill.ca/">The McConnell Brain Imaging Centre</a>, Montreal Neurological Institute, McGill University, Montréal, Québec, Canada<br>
</small></p>
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