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Get sigora working for various ID types.
using Uniprot https://github.com/protViz/fgcz.gsea.ora/blob/master/R/make_ids_uniprot.R
use MSIGDB r package to map ENTREZ ids to genesets from MSIG and get it running with sigora.
dplry::inner_join(uniprot_entrez, msig_DB, by ="entrez_ID")
The text was updated successfully, but these errors were encountered:
Is sigora::idmap used when ID's in query list map those in gpsRepo?
What is the level argument in the sigora function and how does work? How are hierarchical gpsRepo's created?
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comments on 1) ORA and background 2) sigora::idmap 3) level argument …
ee9a68b
…in sigora() for issue #25
lisajohanna
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Get sigora working for various ID types.
MSIGDB (lisa)
using Uniprot https://github.com/protViz/fgcz.gsea.ora/blob/master/R/make_ids_uniprot.R
use MSIGDB r package to map ENTREZ ids to genesets from MSIG and get it running with sigora.
dplry::inner_join(uniprot_entrez, msig_DB, by ="entrez_ID")
The text was updated successfully, but these errors were encountered: