Main assembly (CLR/HiFi) plus dev evaluation modules

• production release of main assembly pipeline (CLR or HiFi, plus Strand-seq)
• only experimental support for ONT
• requires long reads and Strand-seq
• dev status: evaluation modules (some require Illumina short reads as additional input)
• support for CLR is likely to be reduced or dropped in future releases
• processing of HiFi reads is no longer state-of-the-art (see other dev branches)