From 17d038f9f3a7ffacb44241e19c10d8a36c0664a6 Mon Sep 17 00:00:00 2001 From: Manuel Lera-Ramirez Date: Mon, 30 Sep 2024 11:53:58 +0100 Subject: [PATCH] clear notebook metadata --- tests/jupyter_test_repr.ipynb | 256 +++++++++++++++++----------------- 1 file changed, 128 insertions(+), 128 deletions(-) diff --git a/tests/jupyter_test_repr.ipynb b/tests/jupyter_test_repr.ipynb index 8d139dfa..fac4cf17 100755 --- a/tests/jupyter_test_repr.ipynb +++ b/tests/jupyter_test_repr.ipynb @@ -15,7 +15,7 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -47,7 +47,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -56,7 +56,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -65,7 +65,7 @@ "pydna.dseqrecord.Dseqrecord" ] }, - "execution_count": 3, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -76,7 +76,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -85,7 +85,7 @@ "Dseqrecord(-3)" ] }, - "execution_count": 4, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -96,7 +96,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -105,7 +105,7 @@ "[Dseqrecord(-3), Dseqrecord(-3)]" ] }, - "execution_count": 5, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -116,7 +116,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -125,7 +125,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -134,7 +134,7 @@ "pydna.dseqrecord.Dseqrecord" ] }, - "execution_count": 7, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -145,7 +145,7 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -154,7 +154,7 @@ "Dseqrecord(o3)" ] }, - "execution_count": 8, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -165,7 +165,7 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -174,7 +174,7 @@ "[Dseqrecord(o3), Dseqrecord(o3)]" ] }, - "execution_count": 9, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -185,7 +185,7 @@ }, { "cell_type": "code", - "execution_count": 10, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -194,7 +194,7 @@ "Dseqrecord(o3)" ] }, - "execution_count": 10, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -205,7 +205,7 @@ }, { "cell_type": "code", - "execution_count": 11, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -214,7 +214,7 @@ "[Dseqrecord(o3), Dseqrecord(o3)]" ] }, - "execution_count": 11, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -225,7 +225,7 @@ }, { "cell_type": "code", - "execution_count": 12, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -234,7 +234,7 @@ }, { "cell_type": "code", - "execution_count": 13, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -243,7 +243,7 @@ "pydna.dseqrecord.Dseqrecord" ] }, - "execution_count": 13, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -254,7 +254,7 @@ }, { "cell_type": "code", - "execution_count": 14, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -263,7 +263,7 @@ "Dseqrecord(-4)" ] }, - "execution_count": 14, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -274,7 +274,7 @@ }, { "cell_type": "code", - "execution_count": 15, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -283,7 +283,7 @@ "[Dseqrecord(-4), Dseqrecord(-4)]" ] }, - "execution_count": 15, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -294,7 +294,7 @@ }, { "cell_type": "code", - "execution_count": 16, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -303,7 +303,7 @@ "[Dseqrecord(-4), Dseqrecord(-4)]" ] }, - "execution_count": 16, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -321,7 +321,7 @@ }, { "cell_type": "code", - "execution_count": 17, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -330,7 +330,7 @@ }, { "cell_type": "code", - "execution_count": 18, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -340,7 +340,7 @@ }, { "cell_type": "code", - "execution_count": 19, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -349,7 +349,7 @@ "pydna.genbankrecord.GenbankRecord" ] }, - "execution_count": 19, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -360,7 +360,7 @@ }, { "cell_type": "code", - "execution_count": 20, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -372,7 +372,7 @@ "Gbnk(o3 AccessionNumber 1-3)" ] }, - "execution_count": 20, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -384,7 +384,7 @@ }, { "cell_type": "code", - "execution_count": 21, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -393,7 +393,7 @@ "AccessionNumber 1-3" ] }, - "execution_count": 21, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -404,7 +404,7 @@ }, { "cell_type": "code", - "execution_count": 22, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -416,7 +416,7 @@ "Gbnk(o3 AccessionNumber 1-3)" ] }, - "execution_count": 22, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -427,7 +427,7 @@ }, { "cell_type": "code", - "execution_count": 23, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -436,7 +436,7 @@ "AccessionNumber 1-3" ] }, - "execution_count": 23, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -447,7 +447,7 @@ }, { "cell_type": "code", - "execution_count": 24, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -456,7 +456,7 @@ "AccessionNumber 1-3" ] }, - "execution_count": 24, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -467,7 +467,7 @@ }, { "cell_type": "code", - "execution_count": 25, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -476,7 +476,7 @@ }, { "cell_type": "code", - "execution_count": 26, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -485,7 +485,7 @@ }, { "cell_type": "code", - "execution_count": 27, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -494,7 +494,7 @@ "pydna.genbankrecord.GenbankRecord" ] }, - "execution_count": 27, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -505,7 +505,7 @@ }, { "cell_type": "code", - "execution_count": 28, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -517,7 +517,7 @@ "Gbnk(-25 E05006)" ] }, - "execution_count": 28, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -528,7 +528,7 @@ }, { "cell_type": "code", - "execution_count": 29, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -540,7 +540,7 @@ "Gbnk(-25 E05006)" ] }, - "execution_count": 29, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -551,7 +551,7 @@ }, { "cell_type": "code", - "execution_count": 30, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -560,7 +560,7 @@ }, { "cell_type": "code", - "execution_count": 31, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -569,7 +569,7 @@ "pydna.genbankrecord.GenbankRecord" ] }, - "execution_count": 31, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -580,7 +580,7 @@ }, { "cell_type": "code", - "execution_count": 32, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -589,7 +589,7 @@ }, { "cell_type": "code", - "execution_count": 33, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -598,7 +598,7 @@ "pydna.genbankrecord.GenbankRecord" ] }, - "execution_count": 33, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -609,7 +609,7 @@ }, { "cell_type": "code", - "execution_count": 34, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -621,7 +621,7 @@ "Gbnk(-11 E05006 5-15)" ] }, - "execution_count": 34, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -632,7 +632,7 @@ }, { "cell_type": "code", - "execution_count": 35, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -644,7 +644,7 @@ "Gbnk(-11 E05006 5-15)" ] }, - "execution_count": 35, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -662,7 +662,7 @@ }, { "cell_type": "code", - "execution_count": 36, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -671,7 +671,7 @@ }, { "cell_type": "code", - "execution_count": 37, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -680,7 +680,7 @@ }, { "cell_type": "code", - "execution_count": 38, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -689,7 +689,7 @@ "pydna.genbankfile.GenbankFile" ] }, - "execution_count": 38, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -700,7 +700,7 @@ }, { "cell_type": "code", - "execution_count": 39, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -712,7 +712,7 @@ "File(id)(-3)" ] }, - "execution_count": 39, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -725,7 +725,7 @@ }, { "cell_type": "code", - "execution_count": 40, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -734,7 +734,7 @@ }, { "cell_type": "code", - "execution_count": 41, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -743,7 +743,7 @@ "pydna.genbankfile.GenbankFile" ] }, - "execution_count": 41, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -754,7 +754,7 @@ }, { "cell_type": "code", - "execution_count": 42, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -766,7 +766,7 @@ "File(E05006.1)(-25)" ] }, - "execution_count": 42, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -777,7 +777,7 @@ }, { "cell_type": "code", - "execution_count": 43, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -789,7 +789,7 @@ "File(E05006.1_rc)(-25)" ] }, - "execution_count": 43, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -800,7 +800,7 @@ }, { "cell_type": "code", - "execution_count": 44, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -809,7 +809,7 @@ }, { "cell_type": "code", - "execution_count": 45, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -818,7 +818,7 @@ "pydna.genbankfile.GenbankFile" ] }, - "execution_count": 45, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -829,7 +829,7 @@ }, { "cell_type": "code", - "execution_count": 46, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -841,7 +841,7 @@ "File(E05006.1)(-25)" ] }, - "execution_count": 46, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -852,7 +852,7 @@ }, { "cell_type": "code", - "execution_count": 47, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -864,7 +864,7 @@ "File(E05006.1_rc)(-25)" ] }, - "execution_count": 47, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -882,7 +882,7 @@ }, { "cell_type": "code", - "execution_count": 48, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -891,7 +891,7 @@ }, { "cell_type": "code", - "execution_count": 49, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -901,7 +901,7 @@ }, { "cell_type": "code", - "execution_count": 50, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -910,7 +910,7 @@ "pydna.amplicon.Amplicon" ] }, - "execution_count": 50, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -921,7 +921,7 @@ }, { "cell_type": "code", - "execution_count": 51, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -933,7 +933,7 @@ "Amplicon(3)" ] }, - "execution_count": 51, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -944,7 +944,7 @@ }, { "cell_type": "code", - "execution_count": 52, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -959,7 +959,7 @@ }, { "cell_type": "code", - "execution_count": 53, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -968,7 +968,7 @@ }, { "cell_type": "code", - "execution_count": 54, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -977,7 +977,7 @@ }, { "cell_type": "code", - "execution_count": 55, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -986,7 +986,7 @@ "pydna.amplicon.Amplicon" ] }, - "execution_count": 55, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -997,7 +997,7 @@ }, { "cell_type": "code", - "execution_count": 56, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1011,7 +1011,7 @@ "3cgatgatgtgtgcatgactgac...gttctatctcagtcattggtgt5" ] }, - "execution_count": 56, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1022,7 +1022,7 @@ }, { "cell_type": "code", - "execution_count": 57, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1035,7 +1035,7 @@ "| | 30s | |1000bp" ] }, - "execution_count": 57, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1046,7 +1046,7 @@ }, { "cell_type": "code", - "execution_count": 58, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1055,7 +1055,7 @@ "(Amplicon(1000), Amplicon(1000))" ] }, - "execution_count": 58, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1066,7 +1066,7 @@ }, { "cell_type": "code", - "execution_count": 59, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1078,7 +1078,7 @@ "Amplicon(1000)" ] }, - "execution_count": 59, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1089,7 +1089,7 @@ }, { "cell_type": "code", - "execution_count": 60, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1098,7 +1098,7 @@ "(Amplicon(1000), Amplicon(1000))" ] }, - "execution_count": 60, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1109,7 +1109,7 @@ }, { "cell_type": "code", - "execution_count": 61, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1123,7 +1123,7 @@ "3acaccaatgactgagatagaac...gtcagtcatgcacacatcatcg5" ] }, - "execution_count": 61, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1134,7 +1134,7 @@ }, { "cell_type": "code", - "execution_count": 62, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1147,7 +1147,7 @@ "| | 30s | |1000bp" ] }, - "execution_count": 62, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1165,7 +1165,7 @@ }, { "cell_type": "code", - "execution_count": 63, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1174,7 +1174,7 @@ }, { "cell_type": "code", - "execution_count": 64, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1184,7 +1184,7 @@ }, { "cell_type": "code", - "execution_count": 65, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1193,7 +1193,7 @@ "pydna.contig.Contig" ] }, - "execution_count": 65, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1204,7 +1204,7 @@ }, { "cell_type": "code", - "execution_count": 66, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1216,7 +1216,7 @@ }, { "cell_type": "code", - "execution_count": 67, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1229,7 +1229,7 @@ "algorithm..: common_sub_strings" ] }, - "execution_count": 67, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1240,7 +1240,7 @@ }, { "cell_type": "code", - "execution_count": 68, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1249,7 +1249,7 @@ "pydna.assembly.Assembly" ] }, - "execution_count": 68, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1260,7 +1260,7 @@ }, { "cell_type": "code", - "execution_count": 69, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1269,7 +1269,7 @@ }, { "cell_type": "code", - "execution_count": 70, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1278,7 +1278,7 @@ "pydna.contig.Contig" ] }, - "execution_count": 70, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1289,7 +1289,7 @@ }, { "cell_type": "code", - "execution_count": 71, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1312,7 +1312,7 @@ "Contig(o60)" ] }, - "execution_count": 71, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1323,7 +1323,7 @@ }, { "cell_type": "code", - "execution_count": 72, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1338,7 +1338,7 @@ " ACGATGCTATACTAA\n" ] }, - "execution_count": 72, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1349,7 +1349,7 @@ }, { "cell_type": "code", - "execution_count": 73, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1372,7 +1372,7 @@ "Contig(o60)" ] }, - "execution_count": 73, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1383,7 +1383,7 @@ }, { "cell_type": "code", - "execution_count": 74, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -1398,7 +1398,7 @@ " TTAGTATAGCATCGT\n" ] }, - "execution_count": 74, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -1411,9 +1411,9 @@ "metadata": { "anaconda-cloud": {}, "kernelspec": { - "display_name": "Python [conda env:bjorn311]", + "display_name": ".venv", "language": "python", - "name": "conda-env-bjorn311-py" + "name": "python3" }, "language_info": { "codemirror_mode": { @@ -1425,7 +1425,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.7" + "version": "3.12.5" } }, "nbformat": 4,