diff --git a/poetry.lock b/poetry.lock
index 062716c4..146fa610 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -71,33 +71,18 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte
 
 [[package]]
 name = "babel"
-version = "2.13.1"
+version = "2.14.0"
 description = "Internationalization utilities"
 optional = false
 python-versions = ">=3.7"
 files = [
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-[package.dependencies]
-pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""}
-setuptools = {version = "*", markers = "python_version >= \"3.12\""}
-
 [package.extras]
 dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
 
-[[package]]
-name = "backcall"
-version = "0.2.0"
-description = "Specifications for callback functions passed in to an API"
-optional = false
-python-versions = "*"
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-]
-
 [[package]]
 name = "biopython"
 version = "1.81"
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@@ -156,13 +137,13 @@ scipy = "*"
 
 [[package]]
 name = "certifi"
-version = "2023.7.22"
+version = "2023.11.17"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
 files = [
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 ]
 
 [[package]]
@@ -372,196 +353,126 @@ test = ["pytest"]
 
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 description = "Python library for calculating contours of 2D quadrilateral grids"
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 [package.dependencies]
@@ -636,13 +547,13 @@ files = [
 
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+    {file = "importlib_metadata-7.0.0.tar.gz", hash = "sha256:7fc841f8b8332803464e5dc1c63a2e59121f46ca186c0e2e182e80bf8c1319f7"},
 ]
 
 [package.dependencies]
 zipp = ">=0.5"
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
 perf = ["ipython"]
 testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
 
@@ -797,7 +708,7 @@ testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs
 name = "importlib-resources"
 version = "6.1.1"
 description = "Read resources from Python packages"
-optional = false
+optional = true
 python-versions = ">=3.8"
 files = [
     {file = "importlib_resources-6.1.1-py3-none-any.whl", hash = "sha256:e8bf90d8213b486f428c9c39714b920041cb02c184686a3dee24905aaa8105d6"},
@@ -824,13 +735,13 @@ files = [
 
 [[package]]
 name = "ipykernel"
-version = "6.26.0"
+version = "6.27.1"
 description = "IPython Kernel for Jupyter"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "ipykernel-6.26.0-py3-none-any.whl", hash = "sha256:3ba3dc97424b87b31bb46586b5167b3161b32d7820b9201a9e698c71e271602c"},
-    {file = "ipykernel-6.26.0.tar.gz", hash = "sha256:553856658eb8430bbe9653ea041a41bff63e9606fc4628873fc92a6cf3abd404"},
+    {file = "ipykernel-6.27.1-py3-none-any.whl", hash = "sha256:dab88b47f112f9f7df62236511023c9bdeef67abc73af7c652e4ce4441601686"},
+    {file = "ipykernel-6.27.1.tar.gz", hash = "sha256:7d5d594b6690654b4d299edba5e872dc17bb7396a8d0609c97cb7b8a1c605de6"},
 ]
 
 [package.dependencies]
@@ -857,42 +768,40 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio"
 
 [[package]]
 name = "ipython"
-version = "8.12.3"
+version = "8.18.1"
 description = "IPython: Productive Interactive Computing"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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+    {file = "ipython-8.18.1.tar.gz", hash = "sha256:ca6f079bb33457c66e233e4580ebfc4128855b4cf6370dddd73842a9563e8a27"},
 ]
 
 [package.dependencies]
-appnope = {version = "*", markers = "sys_platform == \"darwin\""}
-backcall = "*"
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
 decorator = "*"
+exceptiongroup = {version = "*", markers = "python_version < \"3.11\""}
 jedi = ">=0.16"
 matplotlib-inline = "*"
 pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
-pickleshare = "*"
-prompt-toolkit = ">=3.0.30,<3.0.37 || >3.0.37,<3.1.0"
+prompt-toolkit = ">=3.0.41,<3.1.0"
 pygments = ">=2.4.0"
 stack-data = "*"
 traitlets = ">=5"
 typing-extensions = {version = "*", markers = "python_version < \"3.10\""}
 
 [package.extras]
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+all = ["black", "curio", "docrepr", "exceptiongroup", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.22)", "pandas", "pickleshare", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio (<0.22)", "qtconsole", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "trio", "typing-extensions"]
 black = ["black"]
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+doc = ["docrepr", "exceptiongroup", "ipykernel", "matplotlib", "pickleshare", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio (<0.22)", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "typing-extensions"]
 kernel = ["ipykernel"]
 nbconvert = ["nbconvert"]
 nbformat = ["nbformat"]
 notebook = ["ipywidgets", "notebook"]
 parallel = ["ipyparallel"]
 qtconsole = ["qtconsole"]
-test = ["pytest (<7.1)", "pytest-asyncio", "testpath"]
-test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.21)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"]
+test = ["pickleshare", "pytest (<7.1)", "pytest-asyncio (<0.22)", "testpath"]
+test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.22)", "pandas", "pickleshare", "pytest (<7.1)", "pytest-asyncio (<0.22)", "testpath", "trio"]
 
 [[package]]
 name = "jedi"
@@ -932,20 +841,18 @@ i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "jsonschema"
-version = "4.19.2"
+version = "4.20.0"
 description = "An implementation of JSON Schema validation for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "jsonschema-4.20.0-py3-none-any.whl", hash = "sha256:ed6231f0429ecf966f5bc8dfef245998220549cbbcf140f913b7464c52c3b6b3"},
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 [package.dependencies]
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-importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
 jsonschema-specifications = ">=2023.03.6"
-pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""}
 referencing = ">=0.28.4"
 rpds-py = ">=0.7.1"
 
@@ -955,17 +862,16 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-
 
 [[package]]
 name = "jsonschema-specifications"
-version = "2023.11.1"
+version = "2023.11.2"
 description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
-importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
 referencing = ">=0.31.0"
 
 [[package]]
@@ -1210,58 +1116,39 @@ files = [
 
 [[package]]
 name = "matplotlib"
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+version = "3.8.2"
 description = "Python plotting package"
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-python-versions = ">=3.8"
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 importlib-resources = {version = ">=3.2.0", markers = "python_version < \"3.10\""}
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 python-dateutil = ">=2.7"
 
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 [[package]]
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-version = "4.8.0"
+version = "4.9.0"
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 python-versions = "*"
 files = [
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@@ -1732,17 +1605,18 @@ files = [
 
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 [package.extras]
 plugins = ["importlib-metadata"]
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 [[package]]
 name = "pyparsing"
@@ -1810,13 +1684,13 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtuale
 
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 [package.dependencies]
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 ]
 
 [package.dependencies]
-numpy = ">=1.18.5,<1.26.0"
+numpy = ">=1.21.6,<1.28.0"
 
 [package.extras]
-dev = ["flake8", "mypy", "pycodestyle", "typing_extensions"]
-doc = ["matplotlib (>2)", "numpydoc", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-panels (>=0.5.2)", "sphinx-tabs"]
-test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
+dev = ["click", "cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"]
+doc = ["jupytext", "matplotlib (>2)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-design (>=0.2.0)"]
+test = ["asv", "gmpy2", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
 
 [[package]]
 name = "setuptools"
-version = "68.2.2"
+version = "69.0.2"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
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+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
 testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
 testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.1)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
 
@@ -2240,13 +2107,13 @@ files = [
 
 [[package]]
 name = "sphinx"
-version = "7.1.2"
+version = "7.2.6"
 description = "Python documentation generator"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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+    {file = "sphinx-7.2.6-py3-none-any.whl", hash = "sha256:1e09160a40b956dc623c910118fa636da93bd3ca0b9876a7b3df90f07d691560"},
+    {file = "sphinx-7.2.6.tar.gz", hash = "sha256:9a5160e1ea90688d5963ba09a2dcd8bdd526620edbb65c328728f1b2228d5ab5"},
 ]
 
 [package.dependencies]
@@ -2258,7 +2125,7 @@ imagesize = ">=1.3"
 importlib-metadata = {version = ">=4.8", markers = "python_version < \"3.10\""}
 Jinja2 = ">=3.0"
 packaging = ">=21.0"
-Pygments = ">=2.13"
+Pygments = ">=2.14"
 requests = ">=2.25.0"
 snowballstemmer = ">=2.0"
 sphinxcontrib-applehelp = "*"
@@ -2266,12 +2133,12 @@ sphinxcontrib-devhelp = "*"
 sphinxcontrib-htmlhelp = ">=2.0.0"
 sphinxcontrib-jsmath = "*"
 sphinxcontrib-qthelp = "*"
-sphinxcontrib-serializinghtml = ">=1.1.5"
+sphinxcontrib-serializinghtml = ">=1.1.9"
 
 [package.extras]
 docs = ["sphinxcontrib-websupport"]
 lint = ["docutils-stubs", "flake8 (>=3.5.0)", "flake8-simplify", "isort", "mypy (>=0.990)", "ruff", "sphinx-lint", "types-requests"]
-test = ["cython", "filelock", "html5lib", "pytest (>=4.6)"]
+test = ["cython (>=3.0)", "filelock", "html5lib", "pytest (>=4.6)", "setuptools (>=67.0)"]
 
 [[package]]
 name = "sphinx-autobuild"
@@ -2313,45 +2180,54 @@ dev = ["bump2version", "sphinxcontrib-httpdomain", "transifex-client", "wheel"]
 
 [[package]]
 name = "sphinxcontrib-applehelp"
-version = "1.0.4"
+version = "1.0.7"
 description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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 ]
 
+[package.dependencies]
+Sphinx = ">=5"
+
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-devhelp"
-version = "1.0.2"
-description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document."
+version = "1.0.5"
+description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.9"
 files = [
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+    {file = "sphinxcontrib_devhelp-1.0.5.tar.gz", hash = "sha256:63b41e0d38207ca40ebbeabcf4d8e51f76c03e78cd61abe118cf4435c73d4212"},
 ]
 
+[package.dependencies]
+Sphinx = ">=5"
+
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-htmlhelp"
-version = "2.0.1"
+version = "2.0.4"
 description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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-    {file = "sphinxcontrib_htmlhelp-2.0.1-py3-none-any.whl", hash = "sha256:c38cb46dccf316c79de6e5515e1770414b797162b23cd3d06e67020e1d2a6903"},
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+    {file = "sphinxcontrib_htmlhelp-2.0.4.tar.gz", hash = "sha256:6c26a118a05b76000738429b724a0568dbde5b72391a688577da08f11891092a"},
 ]
 
+[package.dependencies]
+Sphinx = ">=5"
+
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["html5lib", "pytest"]
@@ -2386,30 +2262,36 @@ test = ["flake8", "mypy", "pytest"]
 
 [[package]]
 name = "sphinxcontrib-qthelp"
-version = "1.0.3"
-description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document."
+version = "1.0.6"
+description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.9"
 files = [
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 ]
 
+[package.dependencies]
+Sphinx = ">=5"
+
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-serializinghtml"
-version = "1.1.5"
-description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)."
+version = "1.1.9"
+description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.9"
 files = [
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+    {file = "sphinxcontrib_serializinghtml-1.1.9-py3-none-any.whl", hash = "sha256:9b36e503703ff04f20e9675771df105e58aa029cfcbc23b8ed716019b7416ae1"},
+    {file = "sphinxcontrib_serializinghtml-1.1.9.tar.gz", hash = "sha256:0c64ff898339e1fac29abd2bf5f11078f3ec413cfe9c046d3120d7ca65530b54"},
 ]
 
+[package.dependencies]
+Sphinx = ">=5"
+
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["pytest"]
@@ -2460,48 +2342,48 @@ files = [
 
 [[package]]
 name = "tornado"
-version = "6.3.3"
+version = "6.4"
 description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
 optional = false
 python-versions = ">= 3.8"
 files = [
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-    {file = "tornado-6.3.3-cp38-abi3-musllinux_1_1_x86_64.whl", hash = "sha256:9dc4444c0defcd3929d5c1eb5706cbe1b116e762ff3e0deca8b715d14bf6ec17"},
-    {file = "tornado-6.3.3-cp38-abi3-win32.whl", hash = "sha256:65ceca9500383fbdf33a98c0087cb975b2ef3bfb874cb35b8de8740cf7f41bd3"},
-    {file = "tornado-6.3.3-cp38-abi3-win_amd64.whl", hash = "sha256:22d3c2fa10b5793da13c807e6fc38ff49a4f6e1e3868b0a6f4164768bb8e20f5"},
-    {file = "tornado-6.3.3.tar.gz", hash = "sha256:e7d8db41c0181c80d76c982aacc442c0783a2c54d6400fe028954201a2e032fe"},
+    {file = "tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:02ccefc7d8211e5a7f9e8bc3f9e5b0ad6262ba2fbb683a6443ecc804e5224ce0"},
+    {file = "tornado-6.4-cp38-abi3-macosx_10_9_x86_64.whl", hash = "sha256:27787de946a9cffd63ce5814c33f734c627a87072ec7eed71f7fc4417bb16263"},
+    {file = "tornado-6.4-cp38-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:f7894c581ecdcf91666a0912f18ce5e757213999e183ebfc2c3fdbf4d5bd764e"},
+    {file = "tornado-6.4-cp38-abi3-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:e43bc2e5370a6a8e413e1e1cd0c91bedc5bd62a74a532371042a18ef19e10579"},
+    {file = "tornado-6.4-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f0251554cdd50b4b44362f73ad5ba7126fc5b2c2895cc62b14a1c2d7ea32f212"},
+    {file = "tornado-6.4-cp38-abi3-musllinux_1_1_aarch64.whl", hash = "sha256:fd03192e287fbd0899dd8f81c6fb9cbbc69194d2074b38f384cb6fa72b80e9c2"},
+    {file = "tornado-6.4-cp38-abi3-musllinux_1_1_i686.whl", hash = "sha256:88b84956273fbd73420e6d4b8d5ccbe913c65d31351b4c004ae362eba06e1f78"},
+    {file = "tornado-6.4-cp38-abi3-musllinux_1_1_x86_64.whl", hash = "sha256:71ddfc23a0e03ef2df1c1397d859868d158c8276a0603b96cf86892bff58149f"},
+    {file = "tornado-6.4-cp38-abi3-win32.whl", hash = "sha256:6f8a6c77900f5ae93d8b4ae1196472d0ccc2775cc1dfdc9e7727889145c45052"},
+    {file = "tornado-6.4-cp38-abi3-win_amd64.whl", hash = "sha256:10aeaa8006333433da48dec9fe417877f8bcc21f48dda8d661ae79da357b2a63"},
+    {file = "tornado-6.4.tar.gz", hash = "sha256:72291fa6e6bc84e626589f1c29d90a5a6d593ef5ae68052ee2ef000dfd273dee"},
 ]
 
 [[package]]
 name = "traitlets"
-version = "5.13.0"
+version = "5.14.0"
 description = "Traitlets Python configuration system"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "traitlets-5.13.0-py3-none-any.whl", hash = "sha256:baf991e61542da48fe8aef8b779a9ea0aa38d8a54166ee250d5af5ecf4486619"},
-    {file = "traitlets-5.13.0.tar.gz", hash = "sha256:9b232b9430c8f57288c1024b34a8f0251ddcc47268927367a0dd3eeaca40deb5"},
+    {file = "traitlets-5.14.0-py3-none-any.whl", hash = "sha256:f14949d23829023013c47df20b4a76ccd1a85effb786dc060f34de7948361b33"},
+    {file = "traitlets-5.14.0.tar.gz", hash = "sha256:fcdaa8ac49c04dfa0ed3ee3384ef6dfdb5d6f3741502be247279407679296772"},
 ]
 
 [package.extras]
 docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
-test = ["argcomplete (>=3.0.3)", "mypy (>=1.6.0)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"]
+test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"]
 
 [[package]]
 name = "typing-extensions"
-version = "4.8.0"
+version = "4.9.0"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "typing_extensions-4.8.0-py3-none-any.whl", hash = "sha256:8f92fc8806f9a6b641eaa5318da32b44d401efaac0f6678c9bc448ba3605faa0"},
-    {file = "typing_extensions-4.8.0.tar.gz", hash = "sha256:df8e4339e9cb77357558cbdbceca33c303714cf861d1eef15e1070055ae8b7ef"},
+    {file = "typing_extensions-4.9.0-py3-none-any.whl", hash = "sha256:af72aea155e91adfc61c3ae9e0e342dbc0cba726d6cba4b6c72c1f34e47291cd"},
+    {file = "typing_extensions-4.9.0.tar.gz", hash = "sha256:23478f88c37f27d76ac8aee6c905017a143b0b1b886c3c9f66bc2fd94f9f5783"},
 ]
 
 [[package]]
@@ -2522,24 +2404,24 @@ zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "wcwidth"
-version = "0.2.10"
+version = "0.2.12"
 description = "Measures the displayed width of unicode strings in a terminal"
 optional = false
 python-versions = "*"
 files = [
-    {file = "wcwidth-0.2.10-py2.py3-none-any.whl", hash = "sha256:aec5179002dd0f0d40c456026e74a729661c9d468e1ed64405e3a6c2176ca36f"},
-    {file = "wcwidth-0.2.10.tar.gz", hash = "sha256:390c7454101092a6a5e43baad8f83de615463af459201709556b6e4b1c861f97"},
+    {file = "wcwidth-0.2.12-py2.py3-none-any.whl", hash = "sha256:f26ec43d96c8cbfed76a5075dac87680124fa84e0855195a6184da9c187f133c"},
+    {file = "wcwidth-0.2.12.tar.gz", hash = "sha256:f01c104efdf57971bcb756f054dd58ddec5204dd15fa31d6503ea57947d97c02"},
 ]
 
 [[package]]
 name = "wheel"
-version = "0.41.3"
+version = "0.42.0"
 description = "A built-package format for Python"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "wheel-0.41.3-py3-none-any.whl", hash = "sha256:488609bc63a29322326e05560731bf7bfea8e48ad646e1f5e40d366607de0942"},
-    {file = "wheel-0.41.3.tar.gz", hash = "sha256:4d4987ce51a49370ea65c0bfd2234e8ce80a12780820d9dc462597a6e60d0841"},
+    {file = "wheel-0.42.0-py3-none-any.whl", hash = "sha256:177f9c9b0d45c47873b619f5b650346d632cdc35fb5e4d25058e09c9e581433d"},
+    {file = "wheel-0.42.0.tar.gz", hash = "sha256:c45be39f7882c9d34243236f2d63cbd58039e360f85d0913425fbd7ceea617a8"},
 ]
 
 [package.extras]
@@ -2568,5 +2450,5 @@ gel = ["matplotlib", "pillow", "scipy"]
 
 [metadata]
 lock-version = "2.0"
-python-versions = ">=3.8"
-content-hash = "f9116f198349f8f2ea56eed13d222b048cbb2eeeb24363c01ae8a5e469341e14"
+python-versions = ">=3.9"
+content-hash = "125067a2c4e6df3f076b6c15e7dec14b81840082bd4de504519cc55312e54281"
diff --git a/pyproject.toml b/pyproject.toml
index 62c1d412..87e372e2 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,86 +1,90 @@
 [project]
-name = "pydna"
-dynamic = ["version"]
-description = "Representing double stranded DNA and functions for simulating cloning and homologous recombination between DNA molecules."
 authors = ["Björn F. Johansson<bjornjobb@gmail.com>"]
+classifiers = [
+  "Development Status :: 4 - Beta",
+  "Environment :: Console",
+  "Intended Audience :: Education",
+  "Intended Audience :: Developers",
+  "Intended Audience :: Science/Research",
+  "License :: OSI Approved :: BSD License",
+  "Operating System :: OS Independent",
+  "Programming Language :: Python :: 3.9",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
+  "Topic :: Education",
+  "Topic :: Scientific/Engineering :: Bio-Informatics",
+]
+description = "Representing double stranded DNA and functions for simulating cloning and homologous recombination between DNA molecules."
+dynamic = ["version"]
+name = "pydna"
 readme = "README.md"
-classifiers=["Development Status :: 4 - Beta",
-             "Environment :: Console",
-             "Intended Audience :: Education",
-             "Intended Audience :: Developers",
-             "Intended Audience :: Science/Research",
-             "License :: OSI Approved :: BSD License",
-             "Operating System :: OS Independent",
-             "Programming Language :: Python :: 3.8",
-             "Programming Language :: Python :: 3.9",
-             "Programming Language :: Python :: 3.10",
-             "Programming Language :: Python :: 3.11",
-             "Programming Language :: Python :: 3.12",
-             "Topic :: Education",
-             "Topic :: Scientific/Engineering :: Bio-Informatics", ]
 [tool.poetry.urls]
 Changelog = "https://github.com/BjornFJohansson/pydna/blob/master/docs/CHANGELOG.md#changelog"
 [tool.poetry]
-name = "pydna"
-version = "6.0.0-a.15.post.2+a7fcca4448"
-description = "Representing double stranded DNA and functions for simulating cloning and homologous recombination between DNA molecules."
 authors = ["BjornFJohansson <bjornjobb@gmail.com>"]
+description = "Representing double stranded DNA and functions for simulating cloning and homologous recombination between DNA molecules."
+documentation = "https://pydna.readthedocs.io/?badge=latest"
+homepage = "https://github.com/BjornFJohansson/pydna#-pydna"
 license = "BSD"
+name = "pydna"
 readme = "README.md"
-homepage = "https://github.com/BjornFJohansson/pydna#-pydna"
-documentation = "https://pydna.readthedocs.io/?badge=latest"
 repository = "https://github.com/BjornFJohansson/pydna/tree/dev_bjorn"
+version = "6.0.0-a.15.post.2+a7fcca4448"
 [tool.poetry.dependencies]
-python = ">=3.8"
 appdirs = ">=1.4.4"
 biopython = ">=1.80"
+cai2 = {version = ">=1.0.5", optional = true}
+matplotlib = {version = ">=3.4.3", optional = true}
 networkx = ">=2.8.8"
-pydivsufsort = ">=0.0.11"
+pillow = {version = ">=8.4.0", optional = true}
 prettytable = ">=3.5.0"
+pydivsufsort = ">=0.0.11"
 pyfiglet = "0.8.post1"
-pyperclip = { version = ">=1.8.2", optional = true }
-scipy = { version = ">=1.9.3", optional = true }
-matplotlib = { version = ">=3.4.3", optional = true }
-pillow = { version = ">=8.4.0", optional = true }
-pyparsing = { version = ">=2.4.7", optional = true }
-requests = { version = ">=2.26.0", optional = true }
-cai2 = { version = ">=1.0.5", optional = true }
+pyparsing = {version = ">=2.4.7", optional = true}
+pyperclip = {version = ">=1.8.2", optional = true}
+python = ">=3.9"
+requests = {version = ">=2.26.0", optional = true}
+scipy = {version = ">=1.9.3", optional = true}
 [tool.poetry.extras]
 clipboard = ["pyperclip"]
-gel = ["scipy", "matplotlib", "pillow"]
 download = ["pyparsing", "requests"]
 express = ["cai2"]
+gel = ["scipy", "matplotlib", "pillow"]
 [build-system]
-requires = ["poetry-core",
-            "poetry-dynamic-versioning"]
 build-backend = "poetry_dynamic_versioning.backend"
+requires = [
+  "poetry-core",
+  "poetry-dynamic-versioning",
+]
 [tool.poetry-dynamic-versioning]
 enable = true
-vcs = "git"
 style = "semver"
+vcs = "git"
 [tool.poetry-dynamic-versioning.substitution]
 folders = [
-  { path = "src"}
+  {path = "src"},
 ]
 [tool.poetry.group.test] # This part can be left out
 [tool.poetry.group.test.dependencies]
+coverage = ">=7.1.0"
+nbval = ">=0.9.6"
 pytest = ">=7.2.0"
 pytest-cov = ">=4.0.0"
 pytest-doctestplus = ">=0.12.1"
 pytest-profiling = ">=1.7.0"
-coverage = ">=7.1.0"
-nbval = ">=0.9.6"
 requests-mock = ">=1.10.0"
 
 [tool.poetry.group.docs.dependencies]
-sphinx-autobuild = "^2021.3.14"
 numpydoc = "^1.6.0"
+sphinx-autobuild = "^2021.3.14"
 sphinx-rtd-theme = "^1.3.0"
+numpy = "^1.26"
 
 [tool.pytest.ini_options]
 minversion = "6.0.2"
 python_files = "test_*.py"
 testpaths = [
-    "tests",
-    "src",
+  "tests",
+  "src",
 ]