Deploying to gh-pages from @ 26e284e 🚀

pydna-group · Oct 7, 2024 · 90cfeec · 90cfeec
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: dd2ee2cc7acc2054b98bd8955eb30415
+config: 803d46a421ca99b74ba6cdc763e1b24d
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_modules/index.html b/_modules/index.html
@@ -1,22 +1,20 @@
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Overview: module code &mdash; pydna 0.0.0.post1+ee53a22 documentation</title>
+  <title>Overview: module code &mdash; pydna 0.0.0.post1+26e284e documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=7ab3649f" />
 
 
-  <!--[if lt IE 9]>
-    <script src="../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-
-        <script src="../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../_static/documentation_options.js?v=f89d630f"></script>
-        <script src="../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=b0a613c0"></script>
+      <script src="../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" /> 
@@ -33,9 +31,6 @@
           <a href="../index.html" class="icon icon-home">
             pydna
           </a>
-              <div class="version">
-                0.0.0
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />

diff --git a/_modules/pydna.html b/_modules/pydna.html
@@ -1,22 +1,20 @@
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>pydna &mdash; pydna 0.0.0.post1+ee53a22 documentation</title>
+  <title>pydna &mdash; pydna 0.0.0.post1+26e284e documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=7ab3649f" />
 
 
-  <!--[if lt IE 9]>
-    <script src="../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-
-        <script src="../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../_static/documentation_options.js?v=f89d630f"></script>
-        <script src="../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=b0a613c0"></script>
+      <script src="../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" /> 
@@ -33,9 +31,6 @@
           <a href="../index.html" class="icon icon-home">
             pydna
           </a>
-              <div class="version">
-                0.0.0
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -223,7 +218,7 @@ <h1>Source code for pydna</h1><div class="highlight"><pre>
 <span class="n">__maintainer__</span> <span class="o">=</span> <span class="s2">&quot;Björn Johansson&quot;</span>
 <span class="n">__email__</span> <span class="o">=</span> <span class="s2">&quot;[email protected]&quot;</span>
 <span class="n">__status__</span> <span class="o">=</span> <span class="s2">&quot;Development&quot;</span>  <span class="c1"># &quot;Production&quot; #&quot;Prototype&quot;</span>
-<span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.0.0-post.1+ee53a22&quot;</span>
+<span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.0.0-post.1+26e284e&quot;</span>
 
 
 <span class="c1"># create config directory</span>

diff --git a/_modules/pydna/amplicon.html b/_modules/pydna/amplicon.html
@@ -1,22 +1,20 @@
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>pydna.amplicon &mdash; pydna 0.0.0.post1+ee53a22 documentation</title>
+  <title>pydna.amplicon &mdash; pydna 0.0.0.post1+26e284e documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=7ab3649f" />
 
 
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=f89d630f"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=b0a613c0"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" /> 
@@ -33,9 +31,6 @@
           <a href="../../index.html" class="icon icon-home">
             pydna
           </a>
-              <div class="version">
-                0.0.0
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />

diff --git a/_modules/pydna/amplify.html b/_modules/pydna/amplify.html
@@ -1,22 +1,20 @@
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>pydna.amplify &mdash; pydna 0.0.0.post1+ee53a22 documentation</title>
+  <title>pydna.amplify &mdash; pydna 0.0.0.post1+26e284e documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=7ab3649f" />
 
 
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=f89d630f"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=b0a613c0"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" /> 
@@ -33,9 +31,6 @@
           <a href="../../index.html" class="icon icon-home">
             pydna
           </a>
-              <div class="version">
-                0.0.0
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />

diff --git a/_modules/pydna/assembly.html b/_modules/pydna/assembly.html
@@ -1,22 +1,20 @@
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>pydna.assembly &mdash; pydna 0.0.0.post1+ee53a22 documentation</title>
+  <title>pydna.assembly &mdash; pydna 0.0.0.post1+26e284e documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=7ab3649f" />
 
 
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=f89d630f"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=b0a613c0"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" /> 
@@ -33,9 +31,6 @@
           <a href="../../index.html" class="icon icon-home">
             pydna
           </a>
-              <div class="version">
-                0.0.0
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />

diff --git a/_modules/pydna/common_sub_strings.html b/_modules/pydna/common_sub_strings.html
@@ -1,22 +1,20 @@
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>pydna.common_sub_strings &mdash; pydna 0.0.0.post1+ee53a22 documentation</title>
+  <title>pydna.common_sub_strings &mdash; pydna 0.0.0.post1+26e284e documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=7ab3649f" />
 
 
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=f89d630f"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=b0a613c0"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" /> 
@@ -33,9 +31,6 @@
           <a href="../../index.html" class="icon icon-home">
             pydna
           </a>
-              <div class="version">
-                0.0.0
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />

diff --git a/_modules/pydna/contig.html b/_modules/pydna/contig.html
@@ -1,22 +1,20 @@
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>pydna.contig &mdash; pydna 0.0.0.post1+ee53a22 documentation</title>
+  <title>pydna.contig &mdash; pydna 0.0.0.post1+26e284e documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=7ab3649f" />
 
 
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=f89d630f"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=b0a613c0"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" /> 
@@ -33,9 +31,6 @@
           <a href="../../index.html" class="icon icon-home">
             pydna
           </a>
-              <div class="version">
-                0.0.0
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />

diff --git a/_modules/pydna/design.html b/_modules/pydna/design.html
@@ -1,22 +1,20 @@
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>pydna.design &mdash; pydna 0.0.0.post1+ee53a22 documentation</title>
+  <title>pydna.design &mdash; pydna 0.0.0.post1+26e284e documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=7ab3649f" />
 
 
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=f89d630f"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=b0a613c0"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" /> 
@@ -33,9 +31,6 @@
           <a href="../../index.html" class="icon icon-home">
             pydna
           </a>
-              <div class="version">
-                0.0.0
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -115,7 +110,7 @@ <h1>Source code for pydna.design</h1><div class="highlight"><pre>
     <span class="n">length</span> <span class="o">=</span> <span class="n">starting_length</span>
     <span class="n">tlen</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">template</span><span class="p">)</span>
 
-    <span class="n">tmp</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">tm_func</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">template</span><span class="o">.</span><span class="n">seq</span><span class="p">[:</span><span class="n">length</span><span class="p">])))</span>
+    <span class="n">tmp</span> <span class="o">=</span> <span class="n">tm_func</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">template</span><span class="o">.</span><span class="n">seq</span><span class="p">[:</span><span class="n">length</span><span class="p">]))</span>
 
     <span class="n">p</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">template</span><span class="o">.</span><span class="n">seq</span><span class="p">[:</span><span class="n">length</span><span class="p">])</span>