diff --git a/.github/workflows/publish-docs.yml b/.github/workflows/publish-docs.yml index 685867c3..1ee79fe5 100644 --- a/.github/workflows/publish-docs.yml +++ b/.github/workflows/publish-docs.yml @@ -29,7 +29,7 @@ jobs: - name: Install this Python package run: | - pip install . + pip install .[clipboard,download,express,gel] - name: Session information run: | diff --git a/docs/index___.rst___ b/docs/index___.rst___ deleted file mode 100755 index ffe4362d..00000000 --- a/docs/index___.rst___ +++ /dev/null @@ -1,200 +0,0 @@ -Welcome to Pydna's documentation! -================================= - - -Module contents ---------------- - -.. automodule:: pydna - :members: - :undoc-members: - :show-inheritance: - -pydna.dseq module ------------------ - -.. automodule:: pydna.dseq - :members: - :undoc-members: - :show-inheritance: - -pydna.dseqrecord module ------------------------ - -.. automodule:: pydna.dseqrecord - :members: - :undoc-members: - :show-inheritance: - -pydna.amplicon module ---------------------- - -.. automodule:: pydna.amplicon - :members: - :undoc-members: - :show-inheritance: - -pydna.amplify module --------------------- - -.. automodule:: pydna.amplify - :members: - :undoc-members: - :show-inheritance: - -pydna.assembly module ---------------------- - -.. automodule:: pydna.assembly - :members: - :undoc-members: - :show-inheritance: - -pydna.common_sub_strings module -------------------------------- - -.. automodule:: pydna.common_sub_strings - :members: - :undoc-members: - :show-inheritance: - -pydna.contig module -------------------- - -.. automodule:: pydna.contig - :members: - :undoc-members: - :show-inheritance: - -pydna.design module -------------------- - -.. automodule:: pydna.design - :members: - :undoc-members: - :show-inheritance: - -pydna.download module ---------------------- - -.. automodule:: pydna.download - :members: - :undoc-members: - :show-inheritance: - - - -pydna.editor module -------------------- - -.. automodule:: pydna.editor - :members: - :undoc-members: - :show-inheritance: - -pydna.gel module ----------------- - -.. automodule:: pydna.gel - :members: - :undoc-members: - :show-inheritance: - -pydna.genbank module --------------------- - -.. automodule:: pydna.genbank - :members: - :undoc-members: - :show-inheritance: - -pydna.genbankfile module ------------------------- - -.. automodule:: pydna.genbankfile - :members: - :undoc-members: - :show-inheritance: - -pydna.genbankfixer module -------------------------- - -.. automodule:: pydna.genbankfixer - :members: - :undoc-members: - :show-inheritance: - -pydna.genbankrecord module --------------------------- - -.. automodule:: pydna.genbankrecord - :members: - :undoc-members: - :show-inheritance: - -pydna.myprimers module ----------------------- - -.. automodule:: pydna.myprimers - :members: - :undoc-members: - :show-inheritance: - -pydna.parsers module --------------------- - -.. automodule:: pydna.parsers - :members: - :undoc-members: - :show-inheritance: - -pydna.primer module -------------------- - -.. automodule:: pydna.primer - :members: - :undoc-members: - :show-inheritance: - -pydna.readers module --------------------- - -.. automodule:: pydna.readers - :members: - :undoc-members: - :show-inheritance: - -pydna.seqrecord module ----------------------- - -.. automodule:: pydna.seqrecord - :members: - :undoc-members: - :show-inheritance: - -pydna.tm module ---------------- - -.. automodule:: pydna.tm - :members: - :undoc-members: - :show-inheritance: - -pydna.utils module ------------------- - -.. automodule:: pydna.utils - :members: - :undoc-members: - :show-inheritance: - - - - - -Indices and tables -================== - -* :ref:`genindex` -* :ref:`modindex` -* :ref:`search`