From ce62d6a999a7b0cb98235203573010108d6fc6be Mon Sep 17 00:00:00 2001
From: Manuel Lera-Ramirez <manulera14@gmail.com>
Date: Tue, 9 Jul 2024 10:18:22 +0100
Subject: [PATCH] fix notebook

---
 tests/format_sequences.ipynb | 51 +++++++-----------------------------
 1 file changed, 9 insertions(+), 42 deletions(-)

diff --git a/tests/format_sequences.ipynb b/tests/format_sequences.ipynb
index ebaeb8b4..f4ec3a4c 100755
--- a/tests/format_sequences.ipynb
+++ b/tests/format_sequences.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 1,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -14,7 +14,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -31,7 +31,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 3,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -41,7 +41,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 4,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -50,7 +50,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [
     {
@@ -85,18 +85,7 @@
     {
      "data": {
       "text/plain": [
-       "LOCUS       .                          3 bp    DNA     linear   UNK 20-DEC-2016\n",
-       "DEFINITION  .\n",
-       "ACCESSION   <unknown id>\n",
-       "VERSION     <unknown id>\n",
-       "KEYWORDS    .\n",
-       "SOURCE      .\n",
-       "  ORGANISM  .\n",
-       "            .\n",
-       "FEATURES             Location/Qualifiers\n",
-       "ORIGIN\n",
-       "        1 aaa\n",
-       "//"
+       "'LOCUS       .                          3 bp    DNA     linear   UNK 20-DEC-2016\\nDEFINITION  .\\nACCESSION   <unknown id>\\nVERSION     <unknown id>\\nKEYWORDS    .\\nSOURCE      .\\n  ORGANISM  .\\n            .\\nFEATURES             Location/Qualifiers\\nORIGIN\\n        1 aaa\\n//'"
       ]
      },
      "execution_count": 6,
@@ -118,18 +107,7 @@
     {
      "data": {
       "text/plain": [
-       "LOCUS       name                       3 bp    DNA     linear   UNK 20-DEC-2016\n",
-       "DEFINITION  description.\n",
-       "ACCESSION   id\n",
-       "VERSION     id\n",
-       "KEYWORDS    .\n",
-       "SOURCE      .\n",
-       "  ORGANISM  .\n",
-       "            .\n",
-       "FEATURES             Location/Qualifiers\n",
-       "ORIGIN\n",
-       "        1 aaa\n",
-       "//"
+       "'LOCUS       name                       3 bp    DNA     linear   UNK 20-DEC-2016\\nDEFINITION  description.\\nACCESSION   id\\nVERSION     id\\nKEYWORDS    .\\nSOURCE      .\\n  ORGANISM  .\\n            .\\nFEATURES             Location/Qualifiers\\nORIGIN\\n        1 aaa\\n//'"
       ]
      },
      "execution_count": 7,
@@ -151,18 +129,7 @@
     {
      "data": {
       "text/plain": [
-       "LOCUS       abc                        3 bp    DNA     linear   UNK 20-DEC-2016\n",
-       "DEFINITION  abc.\n",
-       "ACCESSION   abc\n",
-       "VERSION     abc\n",
-       "KEYWORDS    .\n",
-       "SOURCE      .\n",
-       "  ORGANISM  .\n",
-       "            .\n",
-       "FEATURES             Location/Qualifiers\n",
-       "ORIGIN\n",
-       "        1 aaa\n",
-       "//"
+       "'LOCUS       abc                        3 bp    DNA     linear   UNK 20-DEC-2016\\nDEFINITION  abc.\\nACCESSION   abc\\nVERSION     abc\\nKEYWORDS    .\\nSOURCE      .\\n  ORGANISM  .\\n            .\\nFEATURES             Location/Qualifiers\\nORIGIN\\n        1 aaa\\n//'"
       ]
      },
      "execution_count": 8,
@@ -214,7 +181,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.11.8"
+   "version": "3.12.3"
   }
  },
  "nbformat": 4,