From 36dcd0202e1580f232399329efeed02a1a8bc38b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jan=20Jan=C3=9Fen?= <janssen@mpie.de>
Date: Mon, 27 Nov 2023 16:25:38 +0100
Subject: [PATCH 1/5] Update readthedocs environment

---
 .readthedocs.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.readthedocs.yml b/.readthedocs.yml
index b4de3480..3e4be55b 100644
--- a/.readthedocs.yml
+++ b/.readthedocs.yml
@@ -6,9 +6,9 @@
 version: 2
 
 build:
-  os: "ubuntu-20.04"
+  os: "ubuntu-22.04"
   tools:
-    python: "mambaforge-4.10"
+    python: "mambaforge-22.9"
 
 # Build documentation in the docs/ directory with Sphinx
 sphinx:

From e47af239e9214396ede1d42ec781f96a4913da8a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jan=20Jan=C3=9Fen?= <janssen@mpie.de>
Date: Mon, 27 Nov 2023 16:38:19 +0100
Subject: [PATCH 2/5] update docs env

---
 .ci_support/environment-docs.yml | 21 +++++++++++----------
 .github/workflows/dependabot.yml |  1 +
 2 files changed, 12 insertions(+), 10 deletions(-)

diff --git a/.ci_support/environment-docs.yml b/.ci_support/environment-docs.yml
index 1a112178..1df656c6 100644
--- a/.ci_support/environment-docs.yml
+++ b/.ci_support/environment-docs.yml
@@ -1,13 +1,14 @@
 channels:
 - conda-forge
 dependencies:
-  - nbsphinx
-  - sphinx
-  - myst-parser
-  - numpy
-  - mpich
-  - cloudpickle
-  - mpi4py
-  - tqdm
-  - pyzmq
-  - flux-core
\ No newline at end of file
+- nbsphinx
+- sphinx
+- myst-parser
+- numpy
+- openmpi
+- cloudpickle =3.0.0
+- mpi4py =3.1.5
+- tqdm =4.66.1
+- pyzmq =25.1.1
+- flux-core
+- versioneer =0.29
\ No newline at end of file
diff --git a/.github/workflows/dependabot.yml b/.github/workflows/dependabot.yml
index 85028d85..74b47f22 100644
--- a/.github/workflows/dependabot.yml
+++ b/.github/workflows/dependabot.yml
@@ -25,6 +25,7 @@ jobs:
           sed -i "/${package}/s/${from}/${to}/g" .ci_support/environment-mpich.yml
           sed -i "/${package}/s/${from}/${to}/g" .ci_support/environment-openmpi.yml
           sed -i "/${package}/s/${from}/${to}/g" .ci_support/environment-win.yml
+          sed -i "/${package}/s/${from}/${to}/g" .ci_support/environment-docs.yml
       - name: UpdateDependabotPR commit
         run: |
           git config --local user.email "pyiron@mpie.de"

From bc08eb81692ec5bbfb3daa15fe0361a37de9a883 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jan=20Jan=C3=9Fen?= <janssen@mpie.de>
Date: Mon, 27 Nov 2023 17:03:06 +0100
Subject: [PATCH 3/5] Overwrite installation

---
 .readthedocs.yml | 12 +++++-------
 1 file changed, 5 insertions(+), 7 deletions(-)

diff --git a/.readthedocs.yml b/.readthedocs.yml
index 3e4be55b..00d0319d 100644
--- a/.readthedocs.yml
+++ b/.readthedocs.yml
@@ -9,6 +9,10 @@ build:
   os: "ubuntu-22.04"
   tools:
     python: "mambaforge-22.9"
+  commands:
+    - pip install versioneer[toml]==0.29
+    - pip install . --no-deps --no-build-isolation
+    - python -m sphinx -T -E -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html
 
 # Build documentation in the docs/ directory with Sphinx
 sphinx:
@@ -19,10 +23,4 @@ formats: []
 
 # Install pyiron from conda
 conda:
-  environment: .ci_support/environment-docs.yml
-
-# Optionally set the version of Python and requirements required to build your docs
-python:
-  install:
-    - method: pip
-      path: .
\ No newline at end of file
+  environment: .ci_support/environment-docs.yml
\ No newline at end of file

From 4744d3f26faf295ced3633f1c1bb293b7bf6fa7c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jan=20Jan=C3=9Fen?= <janssen@mpie.de>
Date: Mon, 27 Nov 2023 17:05:33 +0100
Subject: [PATCH 4/5] continue debugging

---
 .ci_support/environment-docs.yml | 3 +--
 .readthedocs.yml                 | 2 ++
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/.ci_support/environment-docs.yml b/.ci_support/environment-docs.yml
index 1df656c6..cb755a1e 100644
--- a/.ci_support/environment-docs.yml
+++ b/.ci_support/environment-docs.yml
@@ -10,5 +10,4 @@ dependencies:
 - mpi4py =3.1.5
 - tqdm =4.66.1
 - pyzmq =25.1.1
-- flux-core
-- versioneer =0.29
\ No newline at end of file
+- flux-core
\ No newline at end of file
diff --git a/.readthedocs.yml b/.readthedocs.yml
index 00d0319d..fa7d48e9 100644
--- a/.readthedocs.yml
+++ b/.readthedocs.yml
@@ -10,6 +10,8 @@ build:
   tools:
     python: "mambaforge-22.9"
   commands:
+    - cat .ci_support/environment-docs.yml
+    - mamba env create --quiet --name readthedocs --file .ci_support/environment-docs.yml
     - pip install versioneer[toml]==0.29
     - pip install . --no-deps --no-build-isolation
     - python -m sphinx -T -E -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html

From f7c3ca5bd41d954864ec40ee48046444fa387a80 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jan=20Jan=C3=9Fen?= <janssen@mpie.de>
Date: Mon, 27 Nov 2023 17:10:44 +0100
Subject: [PATCH 5/5] try pre-build

---
 .readthedocs.yml | 10 ++++------
 1 file changed, 4 insertions(+), 6 deletions(-)

diff --git a/.readthedocs.yml b/.readthedocs.yml
index fa7d48e9..38c2541e 100644
--- a/.readthedocs.yml
+++ b/.readthedocs.yml
@@ -9,12 +9,10 @@ build:
   os: "ubuntu-22.04"
   tools:
     python: "mambaforge-22.9"
-  commands:
-    - cat .ci_support/environment-docs.yml
-    - mamba env create --quiet --name readthedocs --file .ci_support/environment-docs.yml
-    - pip install versioneer[toml]==0.29
-    - pip install . --no-deps --no-build-isolation
-    - python -m sphinx -T -E -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html
+  jobs:
+    pre_build:
+      - pip install versioneer[toml]==0.29
+      - pip install . --no-deps --no-build-isolation
 
 # Build documentation in the docs/ directory with Sphinx
 sphinx: