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pyranges

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  1. pyranges pyranges Public

    Performant Pythonic GenomicRanges

    Python 444 47

  2. ncls ncls Public

    The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.

    C 215 21

  3. pyrle pyrle Public

    Numerical Run Length Encoding and Arithmetic in Cython

    Python 17 3

  4. bamread bamread Public

    Bam to Pandas DataFrame, quickly

    Cython 13 6

  5. pyranges_1.x pyranges_1.x Public

    PyRanges as a DataFrame subclass.

    Python 13 2

  6. bwread bwread Public

    Read bigwig into pyranges or dataframe

    Cython 5

Repositories

Showing 10 of 12 repositories
  • pyranges_plot Public

    Gene visualization package for dataframe objects generated with PyRanges

    pyranges/pyranges_plot’s past year of commit activity
    Python 2 MIT 2 4 0 Updated Nov 4, 2024
  • bwread Public

    Read bigwig into pyranges or dataframe

    pyranges/bwread’s past year of commit activity
    Cython 5 0 0 1 Updated Sep 3, 2024
  • sorted_nearest Public

    Cython helper library for pyranges. Find nearest interval in linear time at C speed.

    pyranges/sorted_nearest’s past year of commit activity
    Cython 2 BSD-3-Clause 2 1 2 Updated Sep 3, 2024
  • pyrle Public

    Numerical Run Length Encoding and Arithmetic in Cython

    pyranges/pyrle’s past year of commit activity
    Python 17 MIT 3 4 2 Updated Sep 3, 2024
  • bamread Public

    Bam to Pandas DataFrame, quickly

    pyranges/bamread’s past year of commit activity
    Cython 13 6 3 1 Updated Sep 3, 2024
  • ncls Public

    The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.

    pyranges/ncls’s past year of commit activity
    C 215 BSD-3-Clause 21 11 4 Updated Sep 3, 2024
  • pyranges_1.x Public

    PyRanges as a DataFrame subclass.

    pyranges/pyranges_1.x’s past year of commit activity
    Python 13 MIT 2 4 0 Updated Jul 25, 2024
  • pyranges Public

    Performant Pythonic GenomicRanges

    pyranges/pyranges’s past year of commit activity
    Python 444 MIT 47 83 (1 issue needs help) 6 Updated Jun 4, 2024
  • pyranges_example_data Public

    Example data for pyranges

    pyranges/pyranges_example_data’s past year of commit activity
    0 0 0 0 Updated Dec 16, 2023
  • pyranges_db Public

    pyranges add-on to fetch annotation data from UCSC, gencode and ensembl

    pyranges/pyranges_db’s past year of commit activity
    Python 0 0 0 0 Updated Feb 3, 2020
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