MANIFEST.in

#
# Use .add_data_files and .add_data_dir methods in a appropriate
# setup.py files to include non-python files such as documentation,
# data, etc files to distribution. Avoid using MANIFEST.in for that.
#
include MANIFEST.in
include COPYING
include NEWS
include INSTALL
include KNOWN_BUGS
include THANKS
include cy_build.py
include requirements.txt
include pysam/libc*.pxd
include pysam/libc*.pyx
include pysam/libc*.c
include pysam/*.c
include pysam/*.h
include win32/*.[ch]

# exclude tests from pypi tar-ball - they
# require additional data
prune tests/

# samtools
include samtools/configure
include samtools/config.mk.in
include samtools/config.h.in
include samtools/*.h
include samtools/*.c
exclude samtools/config.h
include samtools/*/*.h

# bcftools
include bcftools/*.h
include bcftools/*.c
exclude bcftools/config.h

# htslib
include htslib/*.c
include htslib/*.h
include htslib/INSTALL
include htslib/NEWS
exclude htslib/config.h
include htslib/Makefile
include htslib/htslib_vars.mk
include htslib/configure
include htslib/config.mk.in
include htslib/config.h.in
include htslib/htslib.pc.in
include htslib/htslib/*.h
include htslib/cram/*.c
include htslib/cram/*.h
include htslib/os/*.c
include htslib/os/*.h
include cy_build.py
include requirements.txt

# documentation
include doc/*.py doc/*.rst
include doc/Makefile doc/make.bat