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Fix test failures

Fix test failures #469

Workflow file for this run

name: CI
on: [push, pull_request]
jobs:
test:
runs-on: ${{ matrix.os }}
continue-on-error: ${{ matrix.experimental }}
strategy:
fail-fast: true
matrix:
os: ["ubuntu-latest"]
python-version: ["3.9", "3.10", "3.11"]
experimental: [false]
include:
- python-version: "3.11"
os: "ubuntu-latest"
experimental: true
env:
PYTHON_VERSION: ${{ matrix.python-version }}
OS: ${{ matrix.os }}
UNSTABLE: ${{ matrix.experimental }}
ACTIONS_ALLOW_UNSECURE_COMMANDS: true
steps:
- name: Checkout source
uses: actions/checkout@v4
- name: Setup Conda Environment
uses: conda-incubator/setup-miniconda@v3
with:
miniforge-variant: Mambaforge
miniforge-version: latest
use-mamba: true
python-version: ${{ matrix.python-version }}
environment-file: continuous_integration/environment.yaml
activate-environment: test-environment
- name: Install unstable dependencies
if: matrix.experimental == true
shell: bash -l {0}
run: |
python -m pip install \
--no-deps --upgrade \
--index-url https://pypi.anaconda.org/scipy-wheels-nightly/simple/ \
--trusted-host pypi.anaconda.org \
--no-deps --pre --upgrade \
numpy; \
python -m pip install \
--no-deps --upgrade \
git+https://github.com/yaml/pyyaml \
git+https://github.com/dpath-maintainers/dpath-python \
git+https://github.com/pytroll/trollsift \
git+https://github.com/pytroll/pyresample \
git+https://github.com/pytroll/satpy \
git+https://github.com/pytroll/posttroll \
git+https://github.com/pytroll/pyorbital
- name: Install trollflow2
shell: bash -l {0}
run: |
pip install --no-deps -e .
- name: Run unit tests
shell: bash -l {0}
run: |
pytest --cov=trollflow2 trollflow2/tests --cov-report=xml
- name: Upload unittest coverage to Codecov
uses: codecov/codecov-action@v3
with:
flags: unittests
file: ./coverage.xml
env_vars: OS,PYTHON_VERSION,UNSTABLE