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26 Open 90 Closed
26 Open 90 Closed
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Issues list

ENH: Add file dict Mixin for Kraken2ReportDirectoryFormat
#346 opened Oct 15, 2024 by VinzentRisch
ENH: Adding new type called FeatureTable[Normalized]
#339 opened Jul 19, 2024 by VinzentRisch
identifiers are being parsed as feature labels in various visualizations
#337 opened Jul 11, 2024 by ebolyen
1
MAINT: Implement a validation method for the OrthologFileFmt
#321 opened Apr 18, 2024 by Sann5
2
FEAT: Importing multiplexed paired-end data with separated barcode sequence files
#300 opened Mar 21, 2023 by Keegan-Evans
@gregcaporaso
1
add usage examples to artifact classes good first issue Good for newcomers
#288 opened Dec 2, 2022 by gregcaporaso
1
Conflict with biom-format 2.1.12
#279 opened Jul 18, 2022 by tillea
ENH: new type + format for BLASTDB v5
#275 opened May 17, 2022 by nbokulich
Transformer from Newick to dendropy
#269 opened Mar 10, 2022 by chrysn
1
Change Newick validation from sniff to validate
#247 opened Jun 10, 2020 by ChrisKeefe
1
Importing manifest v1 without sample names produce unclear error
#229 opened Sep 23, 2019 by ChrisKeefe
1
PHRED64 variants of Multiplexed*EndBarcodeInSequence
#225 opened Aug 18, 2019 by colinbrislawn
1
Validate paired-end sets are record-matched good first issue Good for newcomers Hacktoberfest Good fit for the Hacktoberfest challenge
#207 opened Mar 21, 2019 by thermokarst
1
Validate that per-sample-seqs sets aren't empty
#206 opened Mar 21, 2019 by thermokarst
CRLF line endings + fasta (or other text file formats?) = big headache
#205 opened Mar 6, 2019 by nbokulich
BUG: SampleData[AlphaDiversity] -> Metadata doesn't work with tuples bug-sev:3|medium bug-type:3|stops-work It is no longer possible to use QIIME 2 in this way. lang:python Python 3 scope:2|most-projects Most projects are impacted by this change. src:forum From the QIIME 2 Forum. type:bug Something is wrong. type:discussion Targeted discussion on implementations.
#200 opened Nov 14, 2018 by thermokarst
1
DNAFASTAFormat and AlignedDNAFASTAFormat should check for duplicate ids during full validation
#198 opened Nov 6, 2018 by gregcaporaso
Support FASTA files which contain all reads per sample (i.e. not just representative seqs)
#197 opened Nov 5, 2018 by cduvallet
Feature table IDs not guaranteed to work with Metadata IDs
#180 opened May 16, 2018 by thermokarst
Support transforming QIIME1DemuxDirFmt to SingleLanePerSampleSingleEndFastqDirFmt
#176 opened Mar 28, 2018 by thermokarst
1
Support OrdinationFormat -> pd.Dataframe transformation good first issue Good for newcomers Hacktoberfest Good fit for the Hacktoberfest challenge
#175 opened Mar 20, 2018 by thermokarst
CasavaOneEightLanelessPerSampleDirFmt creates an invalid MANIFEST on import type:bug Something is wrong.
#172 opened Mar 7, 2018 by thermokarst
4
scikit-bio based sniffers handle compression transparently type:bug Something is wrong.
#171 opened Feb 27, 2018 by ebolyen
1
have taxonomy format -> Metadata transformers infer column types enhancement metadata
#168 opened Feb 5, 2018 by jairideout
Commas in Sample IDs break the internal manifests for per-sample fastq formats type:bug Something is wrong.
#157 opened Nov 9, 2017 by thermokarst
4
ProTip! Follow long discussions with comments:>50.