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identifiers are being parsed as feature labels in various visualizations #337

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ebolyen opened this issue Jul 11, 2024 · 1 comment
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@ebolyen
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ebolyen commented Jul 11, 2024

Originally by @gregcaporaso:

Various different visualizations, including q2-composition's da-barplot, q2-taxa's barplot, and q2-fmt's feature-peds are parsing feature identifiers as if they have a defined schema to make them more useful in the visualizations. We've had some discussion on this in qiime2/q2-taxa#153 and some improvements to make less assumptions about the schema of identifiers were made in qiime2/q2-composition#122 (aligning composition da-barplot with the approach for taxa barplot). However this is clearly something we need to better support generally.

@ebolyen
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ebolyen commented Jul 11, 2024

This might end up looking like one of the following:

  • A new method on a format which generates a dataframe/series
  • A new object that we transform to which has a dataframe/series
  • A typing.Annotation with some tag or expression indicating the dataframe/series format

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