From b246b3e8070bbd0d33867a335ed7743d020f1ad7 Mon Sep 17 00:00:00 2001 From: Brent Pedersen Date: Tue, 30 Jan 2024 17:16:45 +0100 Subject: [PATCH] message on variant reading error --- src/bedder_vcf.rs | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/src/bedder_vcf.rs b/src/bedder_vcf.rs index c9d3561..2f03f3d 100644 --- a/src/bedder_vcf.rs +++ b/src/bedder_vcf.rs @@ -174,7 +174,13 @@ where self.record_number += 1; Some(Ok(Position::Vcf(Box::new(v)))) } - Err(e) => Some(Err(e)), + Err(e) => { + eprintln!( + "error reading vcf record: {} at line number: {}", + e, self.record_number + ); + Some(Err(e)) + } } } fn name(&self) -> String {