Update Bioc@GH #417
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| name: Update Bioc@GH | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '27 1 * * *' | |
| jobs: | |
| gh-update: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/r-hub/biocatgh/biocatgh:latest | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| env: | |
| BIOCATGH_GITHUB_TOKEN: ${{ secrets.BIOCATGH_GITHUB_TOKEN }} | |
| GITHUB_PAT: ${{ secrets.BIOCATGH_GITHUB_TOKEN }} | |
| steps: | |
| - name: Git config | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "BIOC@GH robot" | |
| git config --global credential.helper 'cache --timeout 21600' | |
| - name: Update outdated packages | |
| run: | | |
| gitcreds::gitcreds_approve(list( | |
| url = "https://github.com", | |
| username = "PersonalAccessToken", | |
| password = Sys.getenv("GITHUB_PAT") | |
| )) | |
| biocatgh::update_all() | |
| shell: Rscript {0} |